Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010012
(1118 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019695.2| bifunctional ATP-dependent dihydroxyacetone ... 431 e-121
>ref|NP_001019695.2| bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase
(cyclizing) [Bos taurus].
Length = 578
Score = 431 bits (1108), Expect = e-121
Identities = 227/248 (91%), Positives = 230/248 (92%)
Frame = +2
Query: 374 MTSKKLVNSVAGCADDALAGLVACNPSLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE 553
MTSKKLVNSVAGCADDALAGLVACNPSLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE
Sbjct: 1 MTSKKLVNSVAGCADDALAGLVACNPSLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE 60
Query: 554 PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL 733
PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL
Sbjct: 61 PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL 120
Query: 734 AREQARAEGIPVEMVVVGDDSAFTVLKKAGRRGLCGTVLIHKXXXXXXXXXXXXXXITNR 913
AREQARAEGIPVEMVVVGDDSAFTVLKKAGRRGLCGTVLIHK IT+R
Sbjct: 121 AREQARAEGIPVEMVVVGDDSAFTVLKKAGRRGLCGTVLIHKVAGALAEAGVGLEEITDR 180
Query: 914 VSVVAKAMGTLGVSLSSCSVPGSRPTFELSADEVELGLGIHGEAGVLRIKMGTADEIVAH 1093
VSVVAKAMGTLGVSLSSCSVPGS+PTFELSADEVELGLGIHGEAGV RIKM TADEIVA
Sbjct: 181 VSVVAKAMGTLGVSLSSCSVPGSKPTFELSADEVELGLGIHGEAGVRRIKMATADEIVAL 240
Query: 1094 MLNHMTDS 1117
ML+HMT S
Sbjct: 241 MLDHMTSS 248
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,386,847
Number of extensions: 1297089
Number of successful extensions: 6621
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6548
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010012
(1118 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540921.2| PREDICTED: similar to W02H5.8 [Canis familiaris]. 417 e-117
>ref|XP_540921.2| PREDICTED: similar to W02H5.8 [Canis familiaris].
Length = 578
Score = 417 bits (1073), Expect = e-117
Identities = 218/248 (87%), Positives = 226/248 (91%)
Frame = +2
Query: 374 MTSKKLVNSVAGCADDALAGLVACNPSLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE 553
M SKKLVN+V GCADDALAGLVACNP+LQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE
Sbjct: 1 MNSKKLVNTVEGCADDALAGLVACNPNLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE 60
Query: 554 PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL 733
PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL
Sbjct: 61 PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL 120
Query: 734 AREQARAEGIPVEMVVVGDDSAFTVLKKAGRRGLCGTVLIHKXXXXXXXXXXXXXXITNR 913
AREQA+AEGIPVEMVV+GDDSAFTVLKKAGRRGLCGTVLIHK ITNR
Sbjct: 121 AREQAQAEGIPVEMVVIGDDSAFTVLKKAGRRGLCGTVLIHKVAGALAEAGVGLEEITNR 180
Query: 914 VSVVAKAMGTLGVSLSSCSVPGSRPTFELSADEVELGLGIHGEAGVLRIKMGTADEIVAH 1093
V+VVAKAMGTLGVSLSSCSVPGSRPTFELS DEVELGLGIHGEAGV RIKM +A+EIV
Sbjct: 181 VNVVAKAMGTLGVSLSSCSVPGSRPTFELSQDEVELGLGIHGEAGVCRIKMASANEIVTL 240
Query: 1094 MLNHMTDS 1117
ML+HMT S
Sbjct: 241 MLDHMTAS 248
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,241,696
Number of extensions: 1335966
Number of successful extensions: 6893
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6859
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010012
(1118 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122689.1| PREDICTED: bifunctional ATP-dependent dihydr... 445 e-125
>ref|XP_003122689.1| PREDICTED: bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP
lyase (cyclizing)-like [Sus scrofa].
Length = 578
Score = 445 bits (1144), Expect = e-125
Identities = 233/248 (93%), Positives = 233/248 (93%)
Frame = +2
Query: 374 MTSKKLVNSVAGCADDALAGLVACNPSLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE 553
MTSKKLVNSVAGCADDALAGLVACNPSLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE
Sbjct: 1 MTSKKLVNSVAGCADDALAGLVACNPSLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE 60
Query: 554 PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL 733
PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL
Sbjct: 61 PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL 120
Query: 734 AREQARAEGIPVEMVVVGDDSAFTVLKKAGRRGLCGTVLIHKXXXXXXXXXXXXXXITNR 913
AREQARAEGIPVEMVVVGDDSAFTVLKKAGRRGLCGTVLIHK ITNR
Sbjct: 121 AREQARAEGIPVEMVVVGDDSAFTVLKKAGRRGLCGTVLIHKVAGALAEAGVGLEEITNR 180
Query: 914 VSVVAKAMGTLGVSLSSCSVPGSRPTFELSADEVELGLGIHGEAGVLRIKMGTADEIVAH 1093
VSVVAKAMGTLGVSLSSCSVPGSRPTFELSADEVELGLGIHGEAGVLRIKM TADEIVAH
Sbjct: 181 VSVVAKAMGTLGVSLSSCSVPGSRPTFELSADEVELGLGIHGEAGVLRIKMATADEIVAH 240
Query: 1094 MLNHMTDS 1117
MLNHMTDS
Sbjct: 241 MLNHMTDS 248
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,073,626
Number of extensions: 842082
Number of successful extensions: 4534
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4498
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010012
(1118 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663471.1| bifunctional ATP-dependent dihydroxyacetone kin... 387 e-107
>ref|NP_663471.1| bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase
(cyclizing) [Mus musculus].
Length = 578
Score = 387 bits (993), Expect = e-107
Identities = 201/248 (81%), Positives = 216/248 (87%)
Frame = +2
Query: 374 MTSKKLVNSVAGCADDALAGLVACNPSLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE 553
M+SKK+VNSV GCADDALAGLVA NP LQLLQGHRVALRSDLD+LKGRVALLSGGGSGHE
Sbjct: 1 MSSKKMVNSVEGCADDALAGLVASNPDLQLLQGHRVALRSDLDTLKGRVALLSGGGSGHE 60
Query: 554 PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL 733
PAHAGFIGKGMLTGVIAG+VF SP VGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL
Sbjct: 61 PAHAGFIGKGMLTGVIAGSVFASPPVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL 120
Query: 734 AREQARAEGIPVEMVVVGDDSAFTVLKKAGRRGLCGTVLIHKXXXXXXXXXXXXXXITNR 913
A EQA+AEGI VEMV+V DDSAFTVLKKAGRRGLCGTVLIHK IT R
Sbjct: 121 AMEQAKAEGISVEMVIVEDDSAFTVLKKAGRRGLCGTVLIHKVAGALAEEGMGLEEITKR 180
Query: 914 VSVVAKAMGTLGVSLSSCSVPGSRPTFELSADEVELGLGIHGEAGVLRIKMGTADEIVAH 1093
VSV+AK MGTLGVSLSSCSVPG+ TFEL+ADE+ELGLGIHGEAGV RIK+ D+IV
Sbjct: 181 VSVIAKTMGTLGVSLSSCSVPGATHTFELAADEIELGLGIHGEAGVRRIKIAPVDQIVTL 240
Query: 1094 MLNHMTDS 1117
ML+HMT++
Sbjct: 241 MLDHMTNT 248
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,164,076
Number of extensions: 1069988
Number of successful extensions: 5129
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5073
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010012
(1118 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056348.2| bifunctional ATP-dependent dihydroxyacetone kin... 422 e-118
>ref|NP_056348.2| bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase
(cyclizing) [Homo sapiens].
Length = 575
Score = 422 bits (1084), Expect = e-118
Identities = 220/248 (88%), Positives = 228/248 (91%)
Frame = +2
Query: 374 MTSKKLVNSVAGCADDALAGLVACNPSLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE 553
MTSKKLVNSVAGCADDALAGLVACNP+LQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE
Sbjct: 1 MTSKKLVNSVAGCADDALAGLVACNPNLQLLQGHRVALRSDLDSLKGRVALLSGGGSGHE 60
Query: 554 PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL 733
PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL
Sbjct: 61 PAHAGFIGKGMLTGVIAGAVFTSPAVGSILAAIRAVAQAGTVGTLLIVKNYTGDRLNFGL 120
Query: 734 AREQARAEGIPVEMVVVGDDSAFTVLKKAGRRGLCGTVLIHKXXXXXXXXXXXXXXITNR 913
AREQARAEGIPVEMVV+GDDSAFTVLKKAGRRGLCGTVLIHK I +
Sbjct: 121 AREQARAEGIPVEMVVIGDDSAFTVLKKAGRRGLCGTVLIHKVAGALAEAGVGLEEIAKQ 180
Query: 914 VSVVAKAMGTLGVSLSSCSVPGSRPTFELSADEVELGLGIHGEAGVLRIKMGTADEIVAH 1093
V+VVAKAMGTLGVSLSSCSVPGS+PTFELSADEVELGLGIHGEAGV RIKM TADEIV
Sbjct: 181 VNVVAKAMGTLGVSLSSCSVPGSKPTFELSADEVELGLGIHGEAGVRRIKMATADEIVKL 240
Query: 1094 MLNHMTDS 1117
ML+HMT++
Sbjct: 241 MLDHMTNT 248
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,204,714
Number of extensions: 1296553
Number of successful extensions: 6307
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6270
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010012
(1118 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 381 e-103
>Sscrofa_Chr02
|| Length = 162569375
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 376 gacctccaagaagctggtgaactcagtggcaggctgtgccgacgatgcccttgctggcct 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9714251 gacctccaagaagctggtgaactcagtggcaggctgtgccgacgatgcccttgctggcct 9714192
Query: 436 ggtggcctgcaaccccagcctgcagctcctgcaaggccaccgagtggccctccgttctga 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9714191 ggtggcctgcaaccccagcctgcagctcctgcaaggccaccgagtggccctccgttctga 9714132
Query: 496 cctggacagtctcaagggccgggtggccctactgtcgggtgggggctctggccatgagcc 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9714131 cctggacagtctcaagggccgggtggccctactgtcgggtgggggctctggccatgagcc 9714072
Query: 556 tgcccatgccgg 567
||||||||||||
Sbjct: 9714071 tgcccatgccgg 9714060
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 675 cagtggggaccctcctcatcgtgaagaactacactggggatcggctcaacttcggcctgg 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9712382 cagtggggaccctcctcatcgtgaagaactacactggggatcggctcaacttcggcctgg 9712323
Query: 735 cccgggagcaggcccgggcagagggcatccccgtggagatggtggtcgttggggacgaca 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9712322 cccgggagcaggcccgggcagagggcatccccgtggagatggtggtcgttggggacgaca 9712263
Query: 795 gcgccttcaccgtcctgaagaaggcgggccggcgggggctctgtggcacggtgctcatac 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9712262 gcgccttcaccgtcctgaagaaggcgggccggcgggggctctgtggcacggtgctcatac 9712203
Query: 855 acaaggtg 862
||||||||
Sbjct: 9712202 acaaggtg 9712195
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 566 gggttcatagggaagggcatgctcacaggggtcatcgcaggagccgtgttcacctccccg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9712564 gggttcatagggaagggcatgctcacaggggtcatcgcaggagccgtgttcacctccccg 9712505
Query: 626 gcagtgggcagcatcctggcggccatcagggcagtggcccaggcgggcacag 677
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9712504 gcagtgggcagcatcctggcggccatcagggcagtggcccaggcgggcacag 9712453
Score = 200 bits (101), Expect = 1e-48
Identities = 139/149 (93%), Gaps = 2/149 (1%)
Strand = Plus / Minus
Query: 1 gttggggcgtctttgagaagcggtggtgggtgctgaggtggtggatgcgggcgtgagcgg 60
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 9718602 gttggggcgtctttgaaaagcggtggcgggtgctgaggtggtggatgcgggcgtgaacgg 9718543
Query: 61 gtagcggaagtgtgcggacgtcccctcctcccccgaagctgatctgcggatctcatcccc 120
||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||| |||
Sbjct: 9718542 gtaacggaaatgtgcggaagtcccctcctcccccgaa-ctgatctgcggatctcat-ccc 9718485
Query: 121 gggcctcgcccctcgccttccccaaaccc 149
||| |||||||||||| ||||||||||||
Sbjct: 9718484 ggggctcgcccctcgctttccccaaaccc 9718456
Score = 186 bits (94), Expect = 2e-44
Identities = 97/98 (98%)
Strand = Plus / Minus
Query: 279 aggcactgcttgccgctcaggccccgtcggattgcctgtcctccggcagctcagcgcgaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9717302 aggcactgcttgccgctcaggccccgtcggattgcctgtcctccggcagctcagcgcgaa 9717243
Query: 339 ggtgtgaactcagcttccttcagagcctccccgccatg 376
||||||||||||||||||||||||||||||||| ||||
Sbjct: 9717242 ggtgtgaactcagcttccttcagagcctccccgtcatg 9717205
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 938 ggaaccctgggagtgagcctgtcctcctgcagcgtccccggttccagacccacctttgag 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9710675 ggaaccctgggagtgagcctgtcctcctgcagcgtccccggttccagacccacctttgag 9710616
Query: 998 ctctcagccgatgaggtggagctgggcctggg 1029
||||||||||||||||||||||||||||||||
Sbjct: 9710615 ctctcagccgatgaggtggagctgggcctggg 9710584
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 858 aggtggcaggtgccctggctgaggcaggtgtggggctggaggagatcacgaatcgggtga 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9711030 aggtggcaggtgccctggctgaggcaggtgtggggctggaggagatcacgaatcgggtga 9710971
Query: 918 gcgtggtcgccaaggccatggg 939
||||||||||||||||||||||
Sbjct: 9710970 gcgtggtcgccaaggccatggg 9710949
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 1070 accgccgacgagattgtggcgcacatgctgaaccacatgacagactcct 1118
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9709873 accgccgacgagattgtggcgcacatgctgaaccacatgacagactcct 9709825
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 1028 gggatccacggggaggctggcgtgctccggataaag 1063
||||||||||||||||||||||||||||||||||||
Sbjct: 9709990 gggatccacggggaggctggcgtgctccggataaag 9709955
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,034,384
Number of extensions: 187
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 9
Length of query: 1118
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1097
Effective length of database: 2,808,413,156
Effective search space: 3080829232132
Effective search space used: 3080829232132
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)