Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010020
(1110 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179173.1| EF-hand domain-containing protein 1 [Bos tau... 703 0.0
Alignment gi|XP_002697329.1| PREDICTED: EF-hand domain (C-terminal) conta... 703 0.0
Alignment gi|XP_002700247.1| PREDICTED: CG11048-like [Bos taurus]. 232 4e-61
Alignment gi|XP_002687202.1| PREDICTED: CG11048-like [Bos taurus]. 134 1e-31
Alignment gi|XP_601891.4| PREDICTED: CG11048-like [Bos taurus]. 134 1e-31
>ref|NP_001179173.1| EF-hand domain-containing protein 1 [Bos taurus].
Length = 640
Score = 703 bits (1815), Expect = 0.0
Identities = 337/370 (91%), Positives = 358/370 (96%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 180
LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR
Sbjct: 201 LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 260
Query: 181 TYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEV 360
TYIIHYYLMDDTVEI EVHERNDGRDPFPLLMNRQRMPKVLVENAKNFP+CVLEISD+EV
Sbjct: 261 TYIIHYYLMDDTVEIREVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPRCVLEISDKEV 320
Query: 361 LEWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE 540
LEWYTAKDFIVGKPLT+LGRTFFIYDCDPFTRQYY+EKFGISDLPRID+SKKEPPP+KQE
Sbjct: 321 LEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQYYQEKFGISDLPRIDMSKKEPPPMKQE 380
Query: 541 LPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAALESPIPEDKGRRFVL 720
LPPYNG+GLIEDSAQNC ALIPKAP+KDVIK+LMN+NKVLRYLA LESP PEDKGRRFVL
Sbjct: 381 LPPYNGFGLIEDSAQNCFALIPKAPQKDVIKMLMNENKVLRYLATLESPFPEDKGRRFVL 440
Query: 721 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFG 900
SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKP SS+ENP+YYGPSDFFIGAVIEVFG
Sbjct: 441 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPGSSVENPVYYGPSDFFIGAVIEVFG 500
Query: 901 HRFVILDSDDYVLKYMESNPAQFSPEALLSIQNHIRRRDTPALELDSQRTEKDPGTQELE 1080
HRFVILD+DDYVLKYMESN AQ+SPEALLSIQNHIR+++ PA ELD Q+ E+DPG ++LE
Sbjct: 501 HRFVILDTDDYVLKYMESNAAQYSPEALLSIQNHIRKQEAPAPELDGQQAEEDPGVRDLE 560
Query: 1081 VLIDTIQKQL 1110
LIDTIQKQL
Sbjct: 561 ALIDTIQKQL 570
Score = 73.2 bits (178), Expect = 4e-13
Identities = 79/302 (26%), Positives = 121/302 (40%), Gaps = 20/302 (6%)
Frame = +1
Query: 106 LTFDKQVLRFYAIWDDTDSMFGE----CRTYIIHYYLMDDTVEILEVHERNDGRDPFPLL 273
+ FDK+VL+F A + + M E R I+YYL DD++ ++E N G P L
Sbjct: 90 VAFDKKVLKFDAYFQEDVPMSIEEHYRIRQVHIYYYLEDDSMSVIEPVVENSGI-PQGKL 148
Query: 274 MNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTMLGRTFFIYDCDPFT 453
+ RQR+ K + + Y KD G +T+ G+TF I DCD FT
Sbjct: 149 IKRQRLSK------------------NDRGDHYHWKDLNRGINITIYGKTFRIVDCDKFT 190
Query: 454 RQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAPKKDVIK 633
Q + E GI + PP K L PY E Q + + +
Sbjct: 191 -QVFLESQGI----------ELNPPEKMALDPYT-----ELRKQPLRKYVTPTDFDQLKQ 234
Query: 634 VLMNDNKVLRYLAAL-ESPIPEDKGRRFVLSYFLATDMISIFEPPVRNSG---------- 780
L D +VLR+ A ++ + R +++ Y+L D + I E RN G
Sbjct: 235 FLTFDKQVLRFYAIWDDTDSMFGECRTYIIHYYLMDDTVEIREVHERNDGRDPFPLLMNR 294
Query: 781 -----IIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKY 945
++ + V S E +Y DF +G + + G F I D D + +Y
Sbjct: 295 QRMPKVLVENAKNFPRCVLEISDKEVLEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQY 354
Query: 946 ME 951
+
Sbjct: 355 YQ 356
Score = 57.8 bits (138), Expect = 2e-08
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Frame = +1
Query: 646 DNKVLRYLAALESPIPED-----KGRRFVLSYFLATDMISIFEPPVRNSGIIGGKYLGRT 810
D KVL++ A + +P + R+ + Y+L D +S+ EP V NSGI GK + R
Sbjct: 93 DKKVLKFDAYFQEDVPMSIEEHYRIRQVHIYYYLEDDSMSVIEPVVENSGIPQGKLIKRQ 152
Query: 811 KVVKPDSSMENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYMESNPAQFSPEALLS 990
++ K D +Y D G I ++G F I+D D + ++ES + +P ++
Sbjct: 153 RLSKNDRG----DHYHWKDLNRGINITIYGKTFRIVDCDKFTQVFLESQGIELNPPEKMA 208
Query: 991 IQNHIRRRDTP 1023
+ + R P
Sbjct: 209 LDPYTELRKQP 219
>ref|XP_002697329.1| PREDICTED: EF-hand domain (C-terminal) containing 1 [Bos taurus].
Length = 640
Score = 703 bits (1815), Expect = 0.0
Identities = 337/370 (91%), Positives = 358/370 (96%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 180
LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR
Sbjct: 201 LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 260
Query: 181 TYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEV 360
TYIIHYYLMDDTVEI EVHERNDGRDPFPLLMNRQRMPKVLVENAKNFP+CVLEISD+EV
Sbjct: 261 TYIIHYYLMDDTVEIREVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPRCVLEISDKEV 320
Query: 361 LEWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE 540
LEWYTAKDFIVGKPLT+LGRTFFIYDCDPFTRQYY+EKFGISDLPRID+SKKEPPP+KQE
Sbjct: 321 LEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQYYQEKFGISDLPRIDMSKKEPPPMKQE 380
Query: 541 LPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAALESPIPEDKGRRFVL 720
LPPYNG+GLIEDSAQNC ALIPKAP+KDVIK+LMN+NKVLRYLA LESP PEDKGRRFVL
Sbjct: 381 LPPYNGFGLIEDSAQNCFALIPKAPQKDVIKMLMNENKVLRYLATLESPFPEDKGRRFVL 440
Query: 721 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFG 900
SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKP SS+ENP+YYGPSDFFIGAVIEVFG
Sbjct: 441 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPGSSVENPVYYGPSDFFIGAVIEVFG 500
Query: 901 HRFVILDSDDYVLKYMESNPAQFSPEALLSIQNHIRRRDTPALELDSQRTEKDPGTQELE 1080
HRFVILD+DDYVLKYMESN AQ+SPEALLSIQNHIR+++ PA ELD Q+ E+DPG ++LE
Sbjct: 501 HRFVILDTDDYVLKYMESNAAQYSPEALLSIQNHIRKQEAPAPELDGQQAEEDPGVRDLE 560
Query: 1081 VLIDTIQKQL 1110
LIDTIQKQL
Sbjct: 561 ALIDTIQKQL 570
Score = 73.2 bits (178), Expect = 4e-13
Identities = 79/302 (26%), Positives = 121/302 (40%), Gaps = 20/302 (6%)
Frame = +1
Query: 106 LTFDKQVLRFYAIWDDTDSMFGE----CRTYIIHYYLMDDTVEILEVHERNDGRDPFPLL 273
+ FDK+VL+F A + + M E R I+YYL DD++ ++E N G P L
Sbjct: 90 VAFDKKVLKFDAYFQEDVPMSIEEHYRIRQVHIYYYLEDDSMSVIEPVVENSGI-PQGKL 148
Query: 274 MNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTMLGRTFFIYDCDPFT 453
+ RQR+ K + + Y KD G +T+ G+TF I DCD FT
Sbjct: 149 IKRQRLSK------------------NDRGDHYHWKDLNRGINITIYGKTFRIVDCDKFT 190
Query: 454 RQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAPKKDVIK 633
Q + E GI + PP K L PY E Q + + +
Sbjct: 191 -QVFLESQGI----------ELNPPEKMALDPYT-----ELRKQPLRKYVTPTDFDQLKQ 234
Query: 634 VLMNDNKVLRYLAAL-ESPIPEDKGRRFVLSYFLATDMISIFEPPVRNSG---------- 780
L D +VLR+ A ++ + R +++ Y+L D + I E RN G
Sbjct: 235 FLTFDKQVLRFYAIWDDTDSMFGECRTYIIHYYLMDDTVEIREVHERNDGRDPFPLLMNR 294
Query: 781 -----IIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKY 945
++ + V S E +Y DF +G + + G F I D D + +Y
Sbjct: 295 QRMPKVLVENAKNFPRCVLEISDKEVLEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQY 354
Query: 946 ME 951
+
Sbjct: 355 YQ 356
Score = 57.8 bits (138), Expect = 2e-08
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Frame = +1
Query: 646 DNKVLRYLAALESPIPED-----KGRRFVLSYFLATDMISIFEPPVRNSGIIGGKYLGRT 810
D KVL++ A + +P + R+ + Y+L D +S+ EP V NSGI GK + R
Sbjct: 93 DKKVLKFDAYFQEDVPMSIEEHYRIRQVHIYYYLEDDSMSVIEPVVENSGIPQGKLIKRQ 152
Query: 811 KVVKPDSSMENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYMESNPAQFSPEALLS 990
++ K D +Y D G I ++G F I+D D + ++ES + +P ++
Sbjct: 153 RLSKNDRG----DHYHWKDLNRGINITIYGKTFRIVDCDKFTQVFLESQGIELNPPEKMA 208
Query: 991 IQNHIRRRDTP 1023
+ + R P
Sbjct: 209 LDPYTELRKQP 219
>ref|XP_002700247.1| PREDICTED: CG11048-like [Bos taurus].
Length = 733
Score = 232 bits (592), Expect = 4e-61
Identities = 133/386 (34%), Positives = 209/386 (54%), Gaps = 33/386 (8%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQPL--RKYVTPTD-FDQLKQFLTFDKQVLRFYAIWDDTDSMFG 171
LNPP + DPY + R++ L + + P + FD LKQFL +D++VLRF+ +WDD+ S+FG
Sbjct: 171 LNPPGQCPEDPYMKTRREKLDCMEPICPYESFDTLKQFLEYDRKVLRFFCVWDDSGSVFG 230
Query: 172 ECRTYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKV----LVENAKNFPQCVL 339
+ R I+HY+L DDT+EI EV N GRD L + R+++PK + + + Q VL
Sbjct: 231 DRRELILHYFLSDDTIEIKEVLPHNSGRDAMSLFLQRRKLPKYGPPGVYQPGQLTDQTVL 290
Query: 340 EI----SDQEVL--------------EWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYY 465
+ S+ V E+Y D +G + + GR + DCD FT+ YY
Sbjct: 291 NVYGGYSETRVYGFLLDKYQLGKLDQEFYKDTDLSIGTTINVWGRKVLLCDCDDFTKTYY 350
Query: 466 KEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLM- 642
+ K+GI + I PP ++++ PPY G+G EDS ++C+ L+P +++ K +
Sbjct: 351 RTKYGIENFTSIPCKAPSPPKIERKFPPYTGFGSEEDSLRSCIGLMPTPHQRNFKKFIEF 410
Query: 643 ----NDNKVLRYLAALESPIPEDKGRRFVLSYFLATDMISIFEPPVRNSGIIGGKYLGRT 810
N + LR+ A L + D R FV+SYFL+ D IS+FEP RNSG GG +L R
Sbjct: 411 DSYGNISNTLRFFAKLITHKCADVERMFVISYFLSDDTISVFEPIERNSGYTGGMFLKRV 470
Query: 811 KVVKPDSSM---ENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYMESNPAQFSPEA 981
+V KP + E Y + ++GA + V G+ F ++++D+Y L YME N +F +
Sbjct: 471 RVKKPGQEVFKSEFSEYIKAEELYVGAKVNVNGYLFFLVNADEYTLNYMERNSDKFPLSS 530
Query: 982 LLSIQNHIRRRDTPALELDSQRTEKD 1059
+ + ++ + + EL T D
Sbjct: 531 IELVIQKLKEEECKSRELKQVFTAAD 556
Score = 75.5 bits (184), Expect = 8e-14
Identities = 86/329 (26%), Positives = 125/329 (37%), Gaps = 48/329 (14%)
Frame = +1
Query: 103 FLTFDKQVLRFYAIWDDTDSMFGE----CRTYIIHYYLMDDTVEILEVHERNDGRDPFPL 270
++ FDKQVL F A +D + R Y I++YL DDTVE+ E +N G P +
Sbjct: 57 WVAFDKQVLSFDAYLEDEVPDKSQENYRIRRYKIYFYLEDDTVEVNEPVLQNSGL-PQGI 115
Query: 271 LMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTMLGRTFFIYDCDPF 450
+ R R + + ++YT F V + GRTF +YDCD F
Sbjct: 116 FIRRHR----------------ISLPPPNEDQFYTVHHFNVNTDIVFYGRTFKVYDCDAF 159
Query: 451 TRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAPKKDVI 630
T+ + K G+ K PP E P Y +C+ I D +
Sbjct: 160 TKNFL-TKIGV---------KLNPPGQCPEDP----YMKTRREKLDCMEPICPYESFDTL 205
Query: 631 KVLMN-DNKVLRYLAALESPIPEDKG------RRFVLSYFLATDMISIFEPPVRNSGIIG 789
K + D KVLR+ + +D G R +L YFL+ D I I E NSG
Sbjct: 206 KQFLEYDRKVLRFFC-----VWDDSGSVFGDRRELILHYFLSDDTIEIKEVLPHNSGRDA 260
Query: 790 -GKYLGRTK--------VVKPDSSMENPI----------------------------YYG 858
+L R K V +P + + +Y
Sbjct: 261 MSLFLQRRKLPKYGPPGVYQPGQLTDQTVLNVYGGYSETRVYGFLLDKYQLGKLDQEFYK 320
Query: 859 PSDFFIGAVIEVFGHRFVILDSDDYVLKY 945
+D IG I V+G + ++ D DD+ Y
Sbjct: 321 DTDLSIGTTINVWGRKVLLCDCDDFTKTY 349
Score = 50.4 bits (119), Expect = 3e-06
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Frame = +1
Query: 529 VKQELPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAALESPIPED--- 699
V ++ P G L + ++ PK D + D +VL + A LE +P+
Sbjct: 22 VGEDKPGIGGELLFGQKIKPKYSVFPKGMGTDSPSWVAFDKQVLSFDAYLEDEVPDKSQE 81
Query: 700 --KGRRFVLSYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFF 873
+ RR+ + ++L D + + EP ++NSG+ G ++ R ++ P + + +Y F
Sbjct: 82 NYRIRRYKIYFYLEDDTVEVNEPVLQNSGLPQGIFIRRHRISLPPPNEDQ--FYTVHHFN 139
Query: 874 IGAVIEVFGHRFVILDSDDYVLKYMESNPAQFSP 975
+ I +G F + D D + ++ + +P
Sbjct: 140 VNTDIVFYGRTFKVYDCDAFTKNFLTKIGVKLNP 173
>ref|XP_002687202.1| PREDICTED: CG11048-like [Bos taurus].
Length = 451
Score = 134 bits (338), Expect = 1e-31
Identities = 73/216 (33%), Positives = 116/216 (53%), Gaps = 8/216 (3%)
Frame = +1
Query: 436 DCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAP 615
DC+ FT+ YY+ K+GI + I PP ++++ PPY G+G EDS +C+ L+P
Sbjct: 59 DCNDFTKTYYRTKYGIENFTSIPCKAPSPPKIERKFPPYTGFGSEEDSLHSCIGLMPIPH 118
Query: 616 KKDVIKVLM-----NDNKVLRYLAALESPIPEDKGRRFVLSYFLATDMISIFEPPVRNSG 780
+++ K + N + LR+ A L + D R FV+SYFL+ D IS+FEP RNSG
Sbjct: 119 QRNFKKFIEFDSYGNISSTLRFFAKLITHKCADVERMFVISYFLSDDTISVFEPIERNSG 178
Query: 781 IIGGKYLGRTKVVKPDSSM---ENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYME 951
GG +L R +V KP + E Y + ++GA + V G+ F ++++D+Y L YME
Sbjct: 179 YTGGMFLKRVRVKKPGQEVFKSEFAEYIKAEELYVGAKVNVNGYLFFLVNADEYTLNYME 238
Query: 952 SNPAQFSPEALLSIQNHIRRRDTPALELDSQRTEKD 1059
N +F + + ++ + + EL T D
Sbjct: 239 RNSDKFPLSNIELVIQKLKEEECKSRELKQVFTAAD 274
Score = 50.1 bits (118), Expect = 4e-06
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Frame = +1
Query: 97 KQFLTFDK-----QVLRFYAIWDDTDSMFGECRTYIIHYYLMDDTVEILEVHERNDGRDP 261
K+F+ FD LRF+A T R ++I Y+L DDT+ + E ERN G
Sbjct: 123 KKFIEFDSYGNISSTLRFFAKLI-THKCADVERMFVISYFLSDDTISVFEPIERNSGYTG 181
Query: 262 FPLLMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTMLGRTFFIYDC 441
+ + R R+ K E+ E E+ A++ VG + + G FF+ +
Sbjct: 182 -GMFLKRVRVKKP-----------GQEVFKSEFAEYIKAEELYVGAKVNVNGYLFFLVNA 229
Query: 442 DPFTRQYYK---EKFGISDLPRIDVSKKEPPPVKQEL 543
D +T Y + +KF +S++ + KE +EL
Sbjct: 230 DEYTLNYMERNSDKFPLSNIELVIQKLKEEECKSREL 266
>ref|XP_601891.4| PREDICTED: CG11048-like [Bos taurus].
Length = 451
Score = 134 bits (338), Expect = 1e-31
Identities = 73/216 (33%), Positives = 116/216 (53%), Gaps = 8/216 (3%)
Frame = +1
Query: 436 DCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAP 615
DC+ FT+ YY+ K+GI + I PP ++++ PPY G+G EDS +C+ L+P
Sbjct: 59 DCNDFTKTYYRTKYGIENFTSIPCKAPSPPKIERKFPPYTGFGSEEDSLHSCIGLMPIPH 118
Query: 616 KKDVIKVLM-----NDNKVLRYLAALESPIPEDKGRRFVLSYFLATDMISIFEPPVRNSG 780
+++ K + N + LR+ A L + D R FV+SYFL+ D IS+FEP RNSG
Sbjct: 119 QRNFKKFIEFDSYGNISSTLRFFAKLITHKCADVERMFVISYFLSDDTISVFEPIERNSG 178
Query: 781 IIGGKYLGRTKVVKPDSSM---ENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYME 951
GG +L R +V KP + E Y + ++GA + V G+ F ++++D+Y L YME
Sbjct: 179 YTGGMFLKRVRVKKPGQEVFKSEFAEYIKAEELYVGAKVNVNGYLFFLVNADEYTLNYME 238
Query: 952 SNPAQFSPEALLSIQNHIRRRDTPALELDSQRTEKD 1059
N +F + + ++ + + EL T D
Sbjct: 239 RNSDKFPLSNIELVIQKLKEEECKSRELKQVFTAAD 274
Score = 50.1 bits (118), Expect = 4e-06
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Frame = +1
Query: 97 KQFLTFDK-----QVLRFYAIWDDTDSMFGECRTYIIHYYLMDDTVEILEVHERNDGRDP 261
K+F+ FD LRF+A T R ++I Y+L DDT+ + E ERN G
Sbjct: 123 KKFIEFDSYGNISSTLRFFAKLI-THKCADVERMFVISYFLSDDTISVFEPIERNSGYTG 181
Query: 262 FPLLMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTMLGRTFFIYDC 441
+ + R R+ K E+ E E+ A++ VG + + G FF+ +
Sbjct: 182 -GMFLKRVRVKKP-----------GQEVFKSEFAEYIKAEELYVGAKVNVNGYLFFLVNA 229
Query: 442 DPFTRQYYK---EKFGISDLPRIDVSKKEPPPVKQEL 543
D +T Y + +KF +S++ + KE +EL
Sbjct: 230 DEYTLNYMERNSDKFPLSNIELVIQKLKEEECKSREL 266
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,701,807
Number of extensions: 1203805
Number of successful extensions: 3915
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3895
Number of HSP's successfully gapped: 13
Length of query: 370
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,240,222
Effective search space: 3787899052
Effective search space used: 3787899052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010020
(1110 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532170.2| PREDICTED: similar to EF-hand domain (C-termina... 683 0.0
Alignment gi|XP_538007.2| PREDICTED: similar to EF-hand domain (C-termina... 243 3e-64
>ref|XP_532170.2| PREDICTED: similar to EF-hand domain (C-terminal) containing 1 [Canis
familiaris].
Length = 810
Score = 683 bits (1762), Expect = 0.0
Identities = 329/371 (88%), Positives = 354/371 (95%), Gaps = 1/371 (0%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 180
LNPPEKMALDPYTELRKQPLRKYVTP+DFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR
Sbjct: 370 LNPPEKMALDPYTELRKQPLRKYVTPSDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 429
Query: 181 TYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEV 360
TYIIHYYLMDDTVEI EVHERN+GRDPFPLLMNRQRMPKVLV+NAKNFPQCVLEISDQEV
Sbjct: 430 TYIIHYYLMDDTVEIREVHERNNGRDPFPLLMNRQRMPKVLVKNAKNFPQCVLEISDQEV 489
Query: 361 LEWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE 540
LEWYTAKDFIVGKPLT+LGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE
Sbjct: 490 LEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE 549
Query: 541 LPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAALESPIPEDKGRRFVL 720
LPPYNG+GLIEDS QNC LIPKAPKKDVIK+L+NDNKVLRYLAALESPIPEDK RRFV
Sbjct: 550 LPPYNGFGLIEDSVQNCFVLIPKAPKKDVIKMLVNDNKVLRYLAALESPIPEDKDRRFVF 609
Query: 721 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFG 900
SYFLA+DMISIFEPPVRNSGIIGGKYLGRTKV KP S+ E+PIYYGP+DFFIGAVIEVFG
Sbjct: 610 SYFLASDMISIFEPPVRNSGIIGGKYLGRTKVAKPSSTAEDPIYYGPTDFFIGAVIEVFG 669
Query: 901 HRFVILDSDDYVLKYMESNPAQFSPEALLSIQNHIRRRDTPALELDSQRTEKD-PGTQEL 1077
HRF+ILD+DDYVLKYME+N AQ+SPEALLSI+N I++++ PA EL++++T +D PG QEL
Sbjct: 670 HRFIILDTDDYVLKYMENNAAQYSPEALLSIRNRIQKQEAPAPELENKQTREDPPGVQEL 729
Query: 1078 EVLIDTIQKQL 1110
E LIDTIQKQL
Sbjct: 730 EALIDTIQKQL 740
Score = 77.8 bits (190), Expect = 2e-14
Identities = 86/314 (27%), Positives = 132/314 (42%), Gaps = 20/314 (6%)
Frame = +1
Query: 64 KYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGE----CRTYIIHYYLMDDTVEILE 231
K P +F + + FDK+VL+F A + + M E R I+YYL DD++ ++E
Sbjct: 247 KQAPPAEF--IPAHVAFDKKVLKFDAYFQEDVPMSTEEHYRIRQVNIYYYLEDDSMSVME 304
Query: 232 VHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTM 411
N G P L+ RQR+ K +DQ + Y KD G LT+
Sbjct: 305 PVVENCGI-PQGKLIKRQRLTK----------------NDQG--DHYHWKDLNRGINLTI 345
Query: 412 LGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNC 591
GRTF + DCD FT Q + E GI + PP K L PY E Q
Sbjct: 346 YGRTFRVVDCDRFT-QVFLESQGI----------ELNPPEKMALDPYT-----ELRKQPL 389
Query: 592 LALIPKAPKKDVIKVLMNDNKVLRYLAAL-ESPIPEDKGRRFVLSYFLATDMISIFEPPV 768
+ + + + L D +VLR+ A ++ + R +++ Y+L D + I E
Sbjct: 390 RKYVTPSDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECRTYIIHYYLMDDTVEIREVHE 449
Query: 769 RNSG------IIGGKYLGRTKV---------VKPDSSMENPIYYGPSDFFIGAVIEVFGH 903
RN+G ++ + + + V V S E +Y DF +G + + G
Sbjct: 450 RNNGRDPFPLLMNRQRMPKVLVKNAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTILGR 509
Query: 904 RFVILDSDDYVLKY 945
F I D D + +Y
Sbjct: 510 TFFIYDCDPFTRQY 523
Score = 55.8 bits (133), Expect = 7e-08
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Frame = +1
Query: 646 DNKVLRYLAALESPIPED-----KGRRFVLSYFLATDMISIFEPPVRNSGIIGGKYLGRT 810
D KVL++ A + +P + R+ + Y+L D +S+ EP V N GI GK + R
Sbjct: 262 DKKVLKFDAYFQEDVPMSTEEHYRIRQVNIYYYLEDDSMSVMEPVVENCGIPQGKLIKRQ 321
Query: 811 KVVKPDSSMENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYMESNPAQFSPEALLS 990
++ K D +Y D G + ++G F ++D D + ++ES + +P ++
Sbjct: 322 RLTKNDQG----DHYHWKDLNRGINLTIYGRTFRVVDCDRFTQVFLESQGIELNPPEKMA 377
Query: 991 IQNHIRRRDTP 1023
+ + R P
Sbjct: 378 LDPYTELRKQP 388
>ref|XP_538007.2| PREDICTED: similar to EF-hand domain (C-terminal) containing 2 [Canis
familiaris].
Length = 779
Score = 243 bits (619), Expect = 3e-64
Identities = 138/389 (35%), Positives = 213/389 (54%), Gaps = 36/389 (9%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQ------PLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDS 162
LNPP + DPY ++R++ PLR Y + FD LKQFL +D++VLRF+ +WDD+ +
Sbjct: 216 LNPPGQCPEDPYMKIRRETLDCMKPLRPYES---FDTLKQFLEYDRKVLRFFCLWDDSAT 272
Query: 163 MFGECRTYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKV----LVENAKNFPQ 330
+FG+ R I+HY+L DDT+E+ EV N GRD L + R+++PK + + + +
Sbjct: 273 LFGDRRELILHYFLSDDTIEVKEVMPHNSGRDAMSLFLQRRKLPKYGPPGVCQPGQVTDR 332
Query: 331 CVLEI--------SDQEVL----------EWYTAKDFIVGKPLTMLGRTFFIYDCDPFTR 456
VL I D +L E+Y D +G + + GR + DCD FT+
Sbjct: 333 TVLNIYGGLKENRVDGYLLDKYKLGKLDQEFYKDSDLFIGATINVWGRKVLLCDCDEFTK 392
Query: 457 QYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAPKKDVIKV 636
YYK K+GI + I P ++++ PPY G+G EDS ++C+ L+P ++D K
Sbjct: 393 TYYKTKYGIENFTSIPCKAPPLPKIERKFPPYTGFGSEEDSLRSCIGLVPTPHQRDFKKF 452
Query: 637 LMND-----NKVLRYLAALESPIPEDKGRRFVLSYFLATDMISIFEPPVRNSGIIGGKYL 801
+ D + LR+ A L + D R FV+SYFL+ D IS+FEP RNSGI GGK+L
Sbjct: 453 MEKDSYGNISNTLRFFAKLITHKCADVDRMFVISYFLSDDTISVFEPIERNSGITGGKFL 512
Query: 802 GRTKVVKPDSSM---ENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYMESNPAQFS 972
R +V KP + E Y + +IGA + V G+ F++L++D+Y L YME+N F
Sbjct: 513 KRIRVKKPGQEVFKSELSEYIKAEELYIGATVNVNGYLFLLLNADEYTLNYMETNSDMFP 572
Query: 973 PEALLSIQNHIRRRDTPALELDSQRTEKD 1059
++ I ++ ++ + E+ T D
Sbjct: 573 MSSIELILQKLKEEESKSREIKQVFTAAD 601
Score = 86.7 bits (213), Expect = 4e-17
Identities = 90/332 (27%), Positives = 132/332 (39%), Gaps = 48/332 (14%)
Frame = +1
Query: 103 FLTFDKQVLRFYAIWDDT--DSMFGE--CRTYIIHYYLMDDTVEILEVHERNDGRDPFPL 270
++ FDKQVL F A +D D G R Y I++YL DDT+++ E +N G P
Sbjct: 102 WVAFDKQVLSFDAYLEDEVPDKSQGNYRIRRYKIYFYLEDDTIQVNEPELKNSGM-PQGT 160
Query: 271 LMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTMLGRTFFIYDCDPF 450
+ RQR+ L D++ ++YT F + + GRTF IYDCD F
Sbjct: 161 SIRRQRIS--------------LPPPDED--QFYTVHHFNINIDIIFYGRTFKIYDCDTF 204
Query: 451 TRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAPKKDVI 630
T+ + K K G+ K PP E P Y I +C+ + D +
Sbjct: 205 TKNFLK-KIGV---------KLNPPGQCPEDP----YMKIRRETLDCMKPLRPYESFDTL 250
Query: 631 KVLMN-DNKVLRYLAALESPIPEDKGRR-FVLSYFLATDMISIFEPPVRNSG-------- 780
K + D KVLR+ + RR +L YFL+ D I + E NSG
Sbjct: 251 KQFLEYDRKVLRFFCLWDDSATLFGDRRELILHYFLSDDTIEVKEVMPHNSGRDAMSLFL 310
Query: 781 ----------------------------------IIGGKYLGRTKVVKPDSSMENPIYYG 858
+ G L + K+ K D +Y
Sbjct: 311 QRRKLPKYGPPGVCQPGQVTDRTVLNIYGGLKENRVDGYLLDKYKLGKLDQE-----FYK 365
Query: 859 PSDFFIGAVIEVFGHRFVILDSDDYVLKYMES 954
SD FIGA I V+G + ++ D D++ Y ++
Sbjct: 366 DSDLFIGATINVWGRKVLLCDCDEFTKTYYKT 397
Score = 53.5 bits (127), Expect = 4e-07
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Frame = +1
Query: 529 VKQELPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAALESPIPEDKG- 705
V ++ P G L+ + + PK D + D +VL + A LE +P+
Sbjct: 67 VSEDKPGIGGELLLGQKTKPKYSAFPKGMGSDAPSWVAFDKQVLSFDAYLEDEVPDKSQG 126
Query: 706 ----RRFVLSYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFF 873
RR+ + ++L D I + EP ++NSG+ G + R ++ P + +Y F
Sbjct: 127 NYRIRRYKIYFYLEDDTIQVNEPELKNSGMPQGTSIRRQRISLPPPDEDQ--FYTVHHFN 184
Query: 874 IGAVIEVFGHRFVILDSDDYVLKYMESNPAQFSP 975
I I +G F I D D + +++ + +P
Sbjct: 185 INIDIIFYGRTFKIYDCDTFTKNFLKKIGVKLNP 218
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,726,754
Number of extensions: 1240166
Number of successful extensions: 3998
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3982
Number of HSP's successfully gapped: 6
Length of query: 370
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 266
Effective length of database: 15,407,560
Effective search space: 4098410960
Effective search space used: 4098410960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010020
(1110 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928795.2| PREDICTED: EF-hand domain-containing protein... 712 0.0
Alignment gi|XP_003360327.1| PREDICTED: EF-hand domain-containing family ... 241 5e-64
Alignment gi|XP_003360328.1| PREDICTED: EF-hand domain-containing family ... 114 1e-25
Alignment gi|XP_003356691.1| PREDICTED: EF-hand domain-containing protein... 52 8e-07
Alignment gi|XP_003356872.1| PREDICTED: hypothetical protein LOC100624132... 51 1e-06
>ref|XP_001928795.2| PREDICTED: EF-hand domain-containing protein 1 [Sus scrofa].
Length = 540
Score = 712 bits (1838), Expect = 0.0
Identities = 347/354 (98%), Positives = 349/354 (98%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 180
LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR
Sbjct: 177 LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 236
Query: 181 TYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEV 360
TYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEV
Sbjct: 237 TYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEV 296
Query: 361 LEWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE 540
LEWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE
Sbjct: 297 LEWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE 356
Query: 541 LPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAALESPIPEDKGRRFVL 720
LPPYNGYGLIEDSAQNCLALIPKAPKKDVIK+LMNDNKVLRYLAALESPIPEDKGRRFVL
Sbjct: 357 LPPYNGYGLIEDSAQNCLALIPKAPKKDVIKMLMNDNKVLRYLAALESPIPEDKGRRFVL 416
Query: 721 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFG 900
SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFG
Sbjct: 417 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFG 476
Query: 901 HRFVILDSDDYVLKYMESNPAQFSPEALLSIQNHIRRRDTPALELDSQRTEKDP 1062
HRFVILDSDDYVLKYMESNPAQFSPEALLSIQNHIRRRDTPALELDS + P
Sbjct: 477 HRFVILDSDDYVLKYMESNPAQFSPEALLSIQNHIRRRDTPALELDSPQGRPKP 530
Score = 67.8 bits (164), Expect = 1e-11
Identities = 71/268 (26%), Positives = 109/268 (40%), Gaps = 16/268 (5%)
Frame = +1
Query: 190 IHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEVLEW 369
I+YYL DD++ ++E N G P L+ RQR+PK + +
Sbjct: 98 IYYYLEDDSMSVIEPVVENSGI-PQGKLIKRQRLPK------------------NDRGDH 138
Query: 370 YTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQELPP 549
Y KD G +T+ GRTF I +CD FT Q + E GI + PP K L P
Sbjct: 139 YHWKDLNRGINITIYGRTFRIVNCDKFT-QVFLESQGI----------ELNPPEKMALDP 187
Query: 550 YNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAAL-ESPIPEDKGRRFVLSY 726
Y E Q + + + L D +VLR+ A ++ + R +++ Y
Sbjct: 188 YT-----ELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECRTYIIHY 242
Query: 727 FLATDMISIFEPPVRNSG------IIGGKYLGRTKV---------VKPDSSMENPIYYGP 861
+L D + I E RN G ++ + + + V V S E +Y
Sbjct: 243 YLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTA 302
Query: 862 SDFFIGAVIEVFGHRFVILDSDDYVLKY 945
DF +G + + G F I D D + +Y
Sbjct: 303 KDFIVGKPLTMLGRTFFIYDCDPFTRQY 330
Score = 52.0 bits (123), Expect = 6e-07
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Frame = +1
Query: 655 VLRYLAALESPIPED-----KGRRFVLSYFLATDMISIFEPPVRNSGIIGGKYLGRTKVV 819
VL++ A + +P + R+ + Y+L D +S+ EP V NSGI GK + R ++
Sbjct: 72 VLKFDAYFQEDVPGSTEEHYRIRQVNIYYYLEDDSMSVIEPVVENSGIPQGKLIKRQRLP 131
Query: 820 KPDSSMENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYMESNPAQFSPEALLSIQN 999
K D +Y D G I ++G F I++ D + ++ES + +P +++
Sbjct: 132 KNDRG----DHYHWKDLNRGINITIYGRTFRIVNCDKFTQVFLESQGIELNPPEKMALDP 187
Query: 1000 HIRRRDTP 1023
+ R P
Sbjct: 188 YTELRKQP 195
>ref|XP_003360327.1| PREDICTED: EF-hand domain-containing family member C2 [Sus scrofa].
Length = 717
Score = 241 bits (615), Expect = 5e-64
Identities = 138/393 (35%), Positives = 208/393 (52%), Gaps = 40/393 (10%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQ------PLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDS 162
LNPP + DPY + R++ PLR Y + FD LKQFL +D++VLRF+ +WDD+ S
Sbjct: 154 LNPPGQCPEDPYMKTRREKLDCVEPLRPYES---FDTLKQFLEYDRKVLRFFCLWDDSGS 210
Query: 163 MFGECRTYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLE 342
+FG+ R I+HY+L DDT+EI EV N GRD L + R+++PK Q
Sbjct: 211 LFGDRRELILHYFLSDDTIEIKEVMPHNSGRDAMSLFLQRRKLPKYGPPGVYQPGQ---- 266
Query: 343 ISDQEVL--------------------------EWYTAKDFIVGKPLTMLGRTFFIYDCD 444
I+D+ VL E+Y D +G + + GR + DCD
Sbjct: 267 IADRTVLNVYGGLSRRRVYSYLLDKYKLGNLDQEFYKDSDLSIGTTINVWGRKVLLCDCD 326
Query: 445 PFTRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAPKKD 624
FT+ YYK K+GI + I PP ++++ PPY G+G EDS ++C+ L+P +++
Sbjct: 327 EFTKTYYKTKYGIENFTSISCKAPPPPKIERKFPPYTGFGSEEDSLRSCIGLVPTPHRRN 386
Query: 625 VIKVLMND-----NKVLRYLAALESPIPEDKGRRFVLSYFLATDMISIFEPPVRNSGIIG 789
K + D + LR+ A L + D R FV+SYFL+ D IS+FEP RNSG G
Sbjct: 387 FKKFMEKDSYGNISNTLRFFAKLITHKCADVERMFVISYFLSDDTISVFEPIERNSGYTG 446
Query: 790 GKYLGRTKVVKPDSSM---ENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYMESNP 960
G +L RT+V KP + E Y + ++GA ++V G+ F++L++D+Y L YME N
Sbjct: 447 GMFLKRTRVKKPGQEVFKSEFSEYVKAEELYVGAKVDVNGYLFLLLNADEYTLNYMEKNS 506
Query: 961 AQFSPEALLSIQNHIRRRDTPALELDSQRTEKD 1059
+F + ++ ++ + EL T D
Sbjct: 507 DKFPRSNIKLALQKVKEEESKSRELKQVFTAAD 539
Score = 70.5 bits (171), Expect = 2e-12
Identities = 77/303 (25%), Positives = 119/303 (39%), Gaps = 44/303 (14%)
Frame = +1
Query: 178 RTYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQE 357
R Y I++YL DDT+++ E +N G P + + R R+ L D++
Sbjct: 69 RCYKIYFYLEDDTIQVNEPALKNSGL-PKGIFIRRHRIS--------------LPPPDED 113
Query: 358 VLEWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQ 537
++YT F + + + GRTF IYDCD FT+ + K K G+ K PP
Sbjct: 114 --QFYTVYHFNINVDIVLYGRTFKIYDCDTFTKNFLK-KIGV---------KLNPPGQCP 161
Query: 538 ELPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMN-DNKVLRYLAALESPIPEDKG--- 705
E P Y +C+ + D +K + D KVLR+ + +D G
Sbjct: 162 EDP----YMKTRREKLDCVEPLRPYESFDTLKQFLEYDRKVLRFFC-----LWDDSGSLF 212
Query: 706 ---RRFVLSYFLATDMISIFEPPVRNSGIIG-GKYLGRTK--------VVKPDSSMENPI 849
R +L YFL+ D I I E NSG +L R K V +P + +
Sbjct: 213 GDRRELILHYFLSDDTIEIKEVMPHNSGRDAMSLFLQRRKLPKYGPPGVYQPGQIADRTV 272
Query: 850 ----------------------------YYGPSDFFIGAVIEVFGHRFVILDSDDYVLKY 945
+Y SD IG I V+G + ++ D D++ Y
Sbjct: 273 LNVYGGLSRRRVYSYLLDKYKLGNLDQEFYKDSDLSIGTTINVWGRKVLLCDCDEFTKTY 332
Query: 946 MES 954
++
Sbjct: 333 YKT 335
>ref|XP_003360328.1| PREDICTED: EF-hand domain-containing family member C2-like [Sus
scrofa].
Length = 439
Score = 114 bits (284), Expect = 1e-25
Identities = 76/235 (32%), Positives = 114/235 (48%), Gaps = 3/235 (1%)
Frame = +1
Query: 364 EWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQEL 543
E+Y D +G + + GR + DCD FT+ YYK K+GI + K V L
Sbjct: 193 EFYKDSDLSIGTTINVWGRKVLLCDCDEFTKTYYKTKYGIGLECLARLLFKHLQHVSATL 252
Query: 544 PPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAALESPIPEDKGRRFVLS 723
P + + Q L+L K N + LR+ A L + D R FV+S
Sbjct: 253 PRAH-----DSFLQGLLSLQ---------KNYGNISNTLRFFAKLITHKCADVERMFVIS 298
Query: 724 YFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSM---ENPIYYGPSDFFIGAVIEV 894
YFL+ D IS+FEP RNSG GG +L RT+V KP + E Y + ++GA ++V
Sbjct: 299 YFLSDDTISVFEPIERNSGYTGGMFLKRTRVKKPGQEVFKSEFSEYVKAEELYVGAKVDV 358
Query: 895 FGHRFVILDSDDYVLKYMESNPAQFSPEALLSIQNHIRRRDTPALELDSQRTEKD 1059
G+ F++L++D+Y L YME N +F + ++ ++ + EL T D
Sbjct: 359 NGYLFLLLNADEYTLNYMEKNSDKFPRSNIKLALQKVKEEESKSRELKQVFTAAD 413
>ref|XP_003356691.1| PREDICTED: EF-hand domain-containing protein 1-like [Sus scrofa].
Length = 380
Score = 51.6 bits (122), Expect = 8e-07
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Frame = +1
Query: 34 YTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDD-----TDSMFGECRTYIIHY 198
Y +L++ P P +F + + FDK+VL+F A + + T+ + R I+Y
Sbjct: 218 YGQLKRAP------PAEF--IPAHVAFDKKVLKFDAYFQEDVPGSTEEHY-RIRQVNIYY 268
Query: 199 YLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTA 378
YL DD++ ++E N G P L+ RQR+PK + + Y
Sbjct: 269 YLEDDSMSVIEPVVENSGI-PQGKLIKRQRLPK------------------NDRGDHYHW 309
Query: 379 KDFIVGKPLTMLGRTFFIYDCDPFTR 456
KD G +T+ GRTF I +CD FT+
Sbjct: 310 KDLNRGINITIYGRTFRIVNCDKFTQ 335
>ref|XP_003356872.1| PREDICTED: hypothetical protein LOC100624132 [Sus scrofa].
Length = 381
Score = 51.2 bits (121), Expect = 1e-06
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = +1
Query: 1033 LDSQRTEKDPGTQELEVLIDTIQKQL 1110
L SQRTEKDPGTQELEVLIDTIQKQL
Sbjct: 286 LPSQRTEKDPGTQELEVLIDTIQKQL 311
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,067,234
Number of extensions: 765836
Number of successful extensions: 2444
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2431
Number of HSP's successfully gapped: 9
Length of query: 370
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,854,232
Effective search space: 2390642640
Effective search space used: 2390642640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010020
(1110 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082250.1| EF-hand domain-containing protein 1 [Mus muscul... 638 0.0
Alignment gi|NP_083192.2| EF-hand domain-containing family member C2 [Mus... 221 1e-57
>ref|NP_082250.1| EF-hand domain-containing protein 1 [Mus musculus].
Length = 648
Score = 638 bits (1645), Expect = 0.0
Identities = 310/378 (82%), Positives = 343/378 (90%), Gaps = 8/378 (2%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 180
LNP EK+ LDPYT+LRK+P+RKYVTP+DFDQLKQFLTFDKQVLRFYAIWDDTDS+FGECR
Sbjct: 201 LNPSEKIPLDPYTQLRKEPVRKYVTPSDFDQLKQFLTFDKQVLRFYAIWDDTDSLFGECR 260
Query: 181 TYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEV 360
YIIHYYLMDDTVEI EVHERN+GRDPFPLLMNRQRMPKVLVENAKNFP+CVLEISDQEV
Sbjct: 261 HYIIHYYLMDDTVEIREVHERNNGRDPFPLLMNRQRMPKVLVENAKNFPKCVLEISDQEV 320
Query: 361 LEWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE 540
LEWYTAKDFIVGKPLT+LGRTFFIYDCDPFTRQ+YK+KFG+ DLP +DV+KKEPPPVKQE
Sbjct: 321 LEWYTAKDFIVGKPLTILGRTFFIYDCDPFTRQFYKDKFGMPDLPPVDVTKKEPPPVKQE 380
Query: 541 LPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAALESPIPEDKGRRFVL 720
LPPYNGYGLIEDSAQNC ALIPKAP+KDV+K+LMNDNKVLRYLAALESPIPEDK RRFV
Sbjct: 381 LPPYNGYGLIEDSAQNCFALIPKAPRKDVVKMLMNDNKVLRYLAALESPIPEDKDRRFVF 440
Query: 721 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFG 900
SYFLATDMISIFEPPVRNSGIIGGK+LGRTKVVK S ++NPIYY PSDFFIGAVIEVFG
Sbjct: 441 SYFLATDMISIFEPPVRNSGIIGGKFLGRTKVVKSFSPVDNPIYYSPSDFFIGAVIEVFG 500
Query: 901 HRFVILDSDDYVLKYMESNPAQFSPEALLSIQNHIRRRDTPALELDSQRTEKDP---GT- 1068
HRFVILD+D+YVLKYMESN +Q+SPEAL SIQN I++ + PA EL+S++ +P GT
Sbjct: 501 HRFVILDTDEYVLKYMESNASQYSPEALASIQNRIQKPELPAPELESKQATGEPMVQGTE 560
Query: 1069 ----QELEVLIDTIQKQL 1110
Q+L+ LID I L
Sbjct: 561 ESKVQDLDALIDQIHMHL 578
Score = 70.5 bits (171), Expect = 2e-12
Identities = 84/326 (25%), Positives = 132/326 (40%), Gaps = 22/326 (6%)
Frame = +1
Query: 34 YTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGE----CRTYIIHYY 201
Y L++ PL ++V + FDK+VL+F A + + + E R I+YY
Sbjct: 74 YGPLKQAPLAEFVPA--------HVAFDKKVLKFSAYFQEDVPISMEEHYRIRHVNIYYY 125
Query: 202 LMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAK 381
L DD++ ++E N G P L+ RQR K ++ + Y K
Sbjct: 126 LEDDSMSVIEPVVENSGI-PQGKLIKRQRFTK------------------NDMGDHYHWK 166
Query: 382 DFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEP--PPVKQELPPYN 555
D G LT+ G+TF I DCD FT Q + E GI ++ S+K P P + P
Sbjct: 167 DLNRGINLTVYGKTFRIVDCDRFT-QDFLESQGI----ELNPSEKIPLDPYTQLRKEPVR 221
Query: 556 GYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAAL-ESPIPEDKGRRFVLSYFL 732
Y D Q + + L D +VLR+ A ++ + R +++ Y+L
Sbjct: 222 KYVTPSDFDQ-------------LKQFLTFDKQVLRFYAIWDDTDSLFGECRHYIIHYYL 268
Query: 733 ATDMISIFEPPVRNSG---------------IIGGKYLGRTKVVKPDSSMENPIYYGPSD 867
D + I E RN+G ++ K V S E +Y D
Sbjct: 269 MDDTVEIREVHERNNGRDPFPLLMNRQRMPKVLVENAKNFPKCVLEISDQEVLEWYTAKD 328
Query: 868 FFIGAVIEVFGHRFVILDSDDYVLKY 945
F +G + + G F I D D + ++
Sbjct: 329 FIVGKPLTILGRTFFIYDCDPFTRQF 354
Score = 57.4 bits (137), Expect = 2e-08
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Frame = +1
Query: 646 DNKVLRYLAALESPIPED-----KGRRFVLSYFLATDMISIFEPPVRNSGIIGGKYLGRT 810
D KVL++ A + +P + R + Y+L D +S+ EP V NSGI GK + R
Sbjct: 93 DKKVLKFSAYFQEDVPISMEEHYRIRHVNIYYYLEDDSMSVIEPVVENSGIPQGKLIKRQ 152
Query: 811 KVVKPDSSMENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYMESNPAQFSPEALLS 990
+ K D +Y D G + V+G F I+D D + ++ES + +P +
Sbjct: 153 RFTKNDMG----DHYHWKDLNRGINLTVYGKTFRIVDCDRFTQDFLESQGIELNPSEKIP 208
Query: 991 IQNHIRRRDTP 1023
+ + + R P
Sbjct: 209 LDPYTQLRKEP 219
>ref|NP_083192.2| EF-hand domain-containing family member C2 [Mus musculus].
Length = 750
Score = 221 bits (562), Expect = 1e-57
Identities = 122/357 (34%), Positives = 200/357 (56%), Gaps = 34/357 (9%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQPLRKYVTP----TDFDQLKQFLTFDKQVLRFYAIWDDTDSMF 168
LNPP + LDPY ++R++ L ++V P FD LK+F+ +D +VLRF+ +WDD+ S+F
Sbjct: 185 LNPPGQCPLDPYMKMRRETL-EFVDPFRPYQSFDTLKRFIQYDGKVLRFFCLWDDSTSLF 243
Query: 169 GECRTYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKV----LVENAKNFPQCV 336
G+ R +++HY+L D TVEI EV N GRD + R ++PK + + + + V
Sbjct: 244 GDRREFVLHYFLCDGTVEIREVLPSNSGRDAMSSFLRRGKLPKYGPPGIYQPGQITDRAV 303
Query: 337 LEI--------SDQEVL----------EWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQY 462
L + +D +L ++YT +D +G + + GR + DCD FT+ Y
Sbjct: 304 LNVYGGLSEWRADGYLLDKYQLGKVEQDFYTDQDLSIGATINVWGRKVLLCDCDEFTKTY 363
Query: 463 YKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLM 642
Y+ K+G+ + I P ++++ PPY G+G EDS ++C+ L P +K+ K +
Sbjct: 364 YRTKYGVDNFTPISCKPPHLPKIERKYPPYTGFGSEEDSFRSCVGLKPTPHRKNFKKFME 423
Query: 643 -----NDNKVLRYLAALESPIPEDKGRRFVLSYFLATDMISIFEPPVRNSGIIGGKYLGR 807
N + +LRY L + D R FV++++L+ D IS+FEP NSG GG +L R
Sbjct: 424 LDSFGNISNILRYFGKLITHKCADVDRIFVIAFYLSDDTISVFEPIENNSGNAGGMFLKR 483
Query: 808 TKVVKPDSSM---ENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYMESNPAQF 969
++V KP + E Y + +IGA + + G+ F++L++D+Y L YME+N +F
Sbjct: 484 SRVKKPGQEVFKSEFSEYIKAEELYIGATVNINGYLFILLNADEYTLNYMENNTDKF 540
Score = 80.9 bits (198), Expect = 2e-15
Identities = 90/323 (27%), Positives = 128/323 (39%), Gaps = 42/323 (13%)
Frame = +1
Query: 103 FLTFDKQVLRFYAIWDDTDS----MFGECRTYIIHYYLMDDTVEILEVHERNDGRDPFPL 270
++ FDKQVL F A +D S R Y I++YL DDT+++ E N G P
Sbjct: 71 WVAFDKQVLSFDAYLEDEISDKRQEIFRIRYYKIYFYLEDDTIQVNEPEVINSGL-PQGT 129
Query: 271 LMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTMLGRTFFIYDCDPF 450
+ RQR+P +P DQ +YT DF + + GRTF IYDCDPF
Sbjct: 130 SIRRQRIP---------YPP---PNDDQ----FYTVYDFNINISVVFYGRTFKIYDCDPF 173
Query: 451 TRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPKAPKKDVI 630
T+ + K K GI K PP + L PY + ++ + P +
Sbjct: 174 TKNFLK-KIGI----------KLNPPGQCPLDPY--MKMRRETLEFVDPFRPYQSFDTLK 220
Query: 631 KVLMNDNKVLRYLAALESPIPEDKGRR-FVLSYFLATDMISIFEPPVRNSGIIG-GKYLG 804
+ + D KVLR+ + RR FVL YFL + I E NSG +L
Sbjct: 221 RFIQYDGKVLRFFCLWDDSTSLFGDRREFVLHYFLCDGTVEIREVLPSNSGRDAMSSFLR 280
Query: 805 RTKVVK--------PDSSMENPI----------------------------YYGPSDFFI 876
R K+ K P + + +Y D I
Sbjct: 281 RGKLPKYGPPGIYQPGQITDRAVLNVYGGLSEWRADGYLLDKYQLGKVEQDFYTDQDLSI 340
Query: 877 GAVIEVFGHRFVILDSDDYVLKY 945
GA I V+G + ++ D D++ Y
Sbjct: 341 GATINVWGRKVLLCDCDEFTKTY 363
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,262,186
Number of extensions: 1051097
Number of successful extensions: 3416
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3405
Number of HSP's successfully gapped: 5
Length of query: 370
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 267
Effective length of database: 12,523,851
Effective search space: 3343868217
Effective search space used: 3343868217
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010020
(1110 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060570.2| EF-hand domain-containing protein 1 isoform 1 [... 694 0.0
Alignment gi|NP_001165891.1| EF-hand domain-containing protein 1 isoform ... 694 0.0
Alignment gi|NP_079460.2| EF-hand domain-containing family member C2 [Hom... 226 2e-59
>ref|NP_060570.2| EF-hand domain-containing protein 1 isoform 1 [Homo sapiens].
Length = 640
Score = 694 bits (1792), Expect = 0.0
Identities = 331/370 (89%), Positives = 356/370 (96%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 180
LNPPEKMALDPYTELRKQPLRKYVTP+DFDQLKQFLTFDKQVLRFYAIWDDTDSM+GECR
Sbjct: 201 LNPPEKMALDPYTELRKQPLRKYVTPSDFDQLKQFLTFDKQVLRFYAIWDDTDSMYGECR 260
Query: 181 TYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEV 360
TYIIHYYLMDDTVEI EVHERNDGRDPFPLLMNRQR+PKVLVENAKNFPQCVLEISDQEV
Sbjct: 261 TYIIHYYLMDDTVEIREVHERNDGRDPFPLLMNRQRVPKVLVENAKNFPQCVLEISDQEV 320
Query: 361 LEWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE 540
LEWYTAKDFIVGK LT+LGRTFFIYDCDPFTR+YYKEKFGI+DLPRIDVSK+EPPPVKQE
Sbjct: 321 LEWYTAKDFIVGKSLTILGRTFFIYDCDPFTRRYYKEKFGITDLPRIDVSKREPPPVKQE 380
Query: 541 LPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAALESPIPEDKGRRFVL 720
LPPYNG+GL+EDSAQNC ALIPKAPKKDVIK+L+NDNKVLRYLA LESPIPEDK RRFV
Sbjct: 381 LPPYNGFGLVEDSAQNCFALIPKAPKKDVIKMLVNDNKVLRYLAVLESPIPEDKDRRFVF 440
Query: 721 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFG 900
SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKP S+++NP+YYGPSDFFIGAVIEVFG
Sbjct: 441 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPYSTVDNPVYYGPSDFFIGAVIEVFG 500
Query: 901 HRFVILDSDDYVLKYMESNPAQFSPEALLSIQNHIRRRDTPALELDSQRTEKDPGTQELE 1080
HRF+ILD+D+YVLKYMESN AQ+SPEAL SIQNH+R+R+ PA E +S++TEKDPG QELE
Sbjct: 501 HRFIILDTDEYVLKYMESNAAQYSPEALASIQNHVRKREAPAPEAESKQTEKDPGVQELE 560
Query: 1081 VLIDTIQKQL 1110
LIDTIQKQL
Sbjct: 561 ALIDTIQKQL 570
Score = 74.3 bits (181), Expect = 2e-13
Identities = 81/314 (25%), Positives = 125/314 (39%), Gaps = 20/314 (6%)
Frame = +1
Query: 64 KYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGE----CRTYIIHYYLMDDTVEILE 231
K P DF + + FDK+VL+F A + + M E R I+YYL DD++ ++E
Sbjct: 78 KQAPPADF--IPAHVAFDKKVLKFDAYFQEDVPMSTEEQYRIRQVNIYYYLEDDSMSVIE 135
Query: 232 VHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTM 411
N G L+ RQR+ K + + Y KD G +T+
Sbjct: 136 PVVENSGILQGKLI-KRQRLAK------------------NDRGDHYHWKDLNRGINITI 176
Query: 412 LGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNC 591
G+TF + DCD FT Q + E GI + PP K L PY E Q
Sbjct: 177 YGKTFRVVDCDQFT-QVFLESQGI----------ELNPPEKMALDPYT-----ELRKQPL 220
Query: 592 LALIPKAPKKDVIKVLMNDNKVLRYLAAL-ESPIPEDKGRRFVLSYFLATDMISIFEPPV 768
+ + + + L D +VLR+ A ++ + R +++ Y+L D + I E
Sbjct: 221 RKYVTPSDFDQLKQFLTFDKQVLRFYAIWDDTDSMYGECRTYIIHYYLMDDTVEIREVHE 280
Query: 769 RNSG---------------IIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFGH 903
RN G ++ + V S E +Y DF +G + + G
Sbjct: 281 RNDGRDPFPLLMNRQRVPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKSLTILGR 340
Query: 904 RFVILDSDDYVLKY 945
F I D D + +Y
Sbjct: 341 TFFIYDCDPFTRRY 354
Score = 62.0 bits (149), Expect = 1e-09
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Frame = +1
Query: 607 KAPKKDVIKV-LMNDNKVLRYLAALESPIP-----EDKGRRFVLSYFLATDMISIFEPPV 768
+AP D I + D KVL++ A + +P + + R+ + Y+L D +S+ EP V
Sbjct: 79 QAPPADFIPAHVAFDKKVLKFDAYFQEDVPMSTEEQYRIRQVNIYYYLEDDSMSVIEPVV 138
Query: 769 RNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYM 948
NSGI+ GK + R ++ K D +Y D G I ++G F ++D D + ++
Sbjct: 139 ENSGILQGKLIKRQRLAKNDRG----DHYHWKDLNRGINITIYGKTFRVVDCDQFTQVFL 194
Query: 949 ESNPAQFSPEALLSIQNHIRRRDTP 1023
ES + +P +++ + R P
Sbjct: 195 ESQGIELNPPEKMALDPYTELRKQP 219
>ref|NP_001165891.1| EF-hand domain-containing protein 1 isoform 2 [Homo sapiens].
Length = 621
Score = 694 bits (1792), Expect = 0.0
Identities = 331/370 (89%), Positives = 356/370 (96%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQPLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGECR 180
LNPPEKMALDPYTELRKQPLRKYVTP+DFDQLKQFLTFDKQVLRFYAIWDDTDSM+GECR
Sbjct: 182 LNPPEKMALDPYTELRKQPLRKYVTPSDFDQLKQFLTFDKQVLRFYAIWDDTDSMYGECR 241
Query: 181 TYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEV 360
TYIIHYYLMDDTVEI EVHERNDGRDPFPLLMNRQR+PKVLVENAKNFPQCVLEISDQEV
Sbjct: 242 TYIIHYYLMDDTVEIREVHERNDGRDPFPLLMNRQRVPKVLVENAKNFPQCVLEISDQEV 301
Query: 361 LEWYTAKDFIVGKPLTMLGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQE 540
LEWYTAKDFIVGK LT+LGRTFFIYDCDPFTR+YYKEKFGI+DLPRIDVSK+EPPPVKQE
Sbjct: 302 LEWYTAKDFIVGKSLTILGRTFFIYDCDPFTRRYYKEKFGITDLPRIDVSKREPPPVKQE 361
Query: 541 LPPYNGYGLIEDSAQNCLALIPKAPKKDVIKVLMNDNKVLRYLAALESPIPEDKGRRFVL 720
LPPYNG+GL+EDSAQNC ALIPKAPKKDVIK+L+NDNKVLRYLA LESPIPEDK RRFV
Sbjct: 362 LPPYNGFGLVEDSAQNCFALIPKAPKKDVIKMLVNDNKVLRYLAVLESPIPEDKDRRFVF 421
Query: 721 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFG 900
SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKP S+++NP+YYGPSDFFIGAVIEVFG
Sbjct: 422 SYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPYSTVDNPVYYGPSDFFIGAVIEVFG 481
Query: 901 HRFVILDSDDYVLKYMESNPAQFSPEALLSIQNHIRRRDTPALELDSQRTEKDPGTQELE 1080
HRF+ILD+D+YVLKYMESN AQ+SPEAL SIQNH+R+R+ PA E +S++TEKDPG QELE
Sbjct: 482 HRFIILDTDEYVLKYMESNAAQYSPEALASIQNHVRKREAPAPEAESKQTEKDPGVQELE 541
Query: 1081 VLIDTIQKQL 1110
LIDTIQKQL
Sbjct: 542 ALIDTIQKQL 551
Score = 74.3 bits (181), Expect = 2e-13
Identities = 81/314 (25%), Positives = 125/314 (39%), Gaps = 20/314 (6%)
Frame = +1
Query: 64 KYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDSMFGE----CRTYIIHYYLMDDTVEILE 231
K P DF + + FDK+VL+F A + + M E R I+YYL DD++ ++E
Sbjct: 59 KQAPPADF--IPAHVAFDKKVLKFDAYFQEDVPMSTEEQYRIRQVNIYYYLEDDSMSVIE 116
Query: 232 VHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTM 411
N G L+ RQR+ K + + Y KD G +T+
Sbjct: 117 PVVENSGILQGKLI-KRQRLAK------------------NDRGDHYHWKDLNRGINITI 157
Query: 412 LGRTFFIYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNC 591
G+TF + DCD FT Q + E GI + PP K L PY E Q
Sbjct: 158 YGKTFRVVDCDQFT-QVFLESQGI----------ELNPPEKMALDPYT-----ELRKQPL 201
Query: 592 LALIPKAPKKDVIKVLMNDNKVLRYLAAL-ESPIPEDKGRRFVLSYFLATDMISIFEPPV 768
+ + + + L D +VLR+ A ++ + R +++ Y+L D + I E
Sbjct: 202 RKYVTPSDFDQLKQFLTFDKQVLRFYAIWDDTDSMYGECRTYIIHYYLMDDTVEIREVHE 261
Query: 769 RNSG---------------IIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFGH 903
RN G ++ + V S E +Y DF +G + + G
Sbjct: 262 RNDGRDPFPLLMNRQRVPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKSLTILGR 321
Query: 904 RFVILDSDDYVLKY 945
F I D D + +Y
Sbjct: 322 TFFIYDCDPFTRRY 335
Score = 62.0 bits (149), Expect = 1e-09
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Frame = +1
Query: 607 KAPKKDVIKV-LMNDNKVLRYLAALESPIP-----EDKGRRFVLSYFLATDMISIFEPPV 768
+AP D I + D KVL++ A + +P + + R+ + Y+L D +S+ EP V
Sbjct: 60 QAPPADFIPAHVAFDKKVLKFDAYFQEDVPMSTEEQYRIRQVNIYYYLEDDSMSVIEPVV 119
Query: 769 RNSGIIGGKYLGRTKVVKPDSSMENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYM 948
NSGI+ GK + R ++ K D +Y D G I ++G F ++D D + ++
Sbjct: 120 ENSGILQGKLIKRQRLAKNDRG----DHYHWKDLNRGINITIYGKTFRVVDCDQFTQVFL 175
Query: 949 ESNPAQFSPEALLSIQNHIRRRDTP 1023
ES + +P +++ + R P
Sbjct: 176 ESQGIELNPPEKMALDPYTELRKQP 200
>ref|NP_079460.2| EF-hand domain-containing family member C2 [Homo sapiens].
Length = 749
Score = 226 bits (577), Expect = 2e-59
Identities = 133/389 (34%), Positives = 205/389 (52%), Gaps = 44/389 (11%)
Frame = +1
Query: 1 LNPPEKMALDPYTELRKQ------PLRKYVTPTDFDQLKQFLTFDKQVLRFYAIWDDTDS 162
+NPP + DPY ++R++ PLR Y + D LKQFL + ++L F+ +WDD+ S
Sbjct: 185 VNPPVQCPEDPYMKIRREVVEHVEPLRPYES---LDTLKQFLQYHGKILCFFCLWDDSVS 241
Query: 163 MFGECRTYIIHYYLMDDTVEILEVHERNDGRDPFPLLMNRQRMPKVLVENAKNFPQCVL- 339
MFG+ R I+HY+L DDT+EI E+ + GRD + + R ++P KN P V
Sbjct: 242 MFGDRRELILHYFLCDDTIEIKELLPHSSGRDALKMFLRRSKLP-------KNCPPRVYQ 294
Query: 340 --EISDQEVL--------------------------EWYTAKDFIVGKPLTMLGRTFFIY 435
+I+D+ VL E+Y D +G + + GR +Y
Sbjct: 295 PGQITDRAVLNSYGDFIKNQADGYLFDRYKLGKVDQEFYKDSDLSLGVTINVWGRKVLLY 354
Query: 436 DCDPFTRQYYKEKFGISDLPRIDVSKKEPPP-VKQELPPYNGYGLIEDSAQNCLALIPKA 612
DCD FT+ YYK K+GI + + PPP ++++ PPYNG+G EDS +NC+ L P
Sbjct: 355 DCDEFTKSYYKSKYGIENFTSVSCKPPSPPPKIERKFPPYNGFGSEEDSLRNCIDLKPTP 414
Query: 613 PKKDVIKVLMND-----NKVLRYLAALESPIPEDKGRRFVLSYFLATDMISIFEPPVRNS 777
+++ K + D + +LR+ A L + D R FV+SY+L D IS+FEP RNS
Sbjct: 415 HRRNFKKFMEKDSYGSKSNILRFFAKLVTDKCVDLDRMFVISYYLGDDTISVFEPIERNS 474
Query: 778 GIIGGKYLGRTKVVKPDSSM---ENPIYYGPSDFFIGAVIEVFGHRFVILDSDDYVLKYM 948
GI GG +L R++V KP + E Y + +IG + V G+ F +L++D+Y L YM
Sbjct: 475 GIAGGMFLKRSRVKKPGQEVFKSELSEYIKAEELYIGVTVNVNGYLFRLLNADEYTLNYM 534
Query: 949 ESNPAQFSPEALLSIQNHIRRRDTPALEL 1035
E N ++ L +++ + + EL
Sbjct: 535 EQNTDKYPFSNLKLALQKLKQEEGKSREL 563
Score = 74.3 bits (181), Expect = 2e-13
Identities = 82/333 (24%), Positives = 130/333 (39%), Gaps = 42/333 (12%)
Frame = +1
Query: 82 DFDQLKQFLTFDKQVLRFYAIWD----DTDSMFGECRTYIIHYYLMDDTVEILEVHERND 249
D + ++ FDKQVL F A + D R Y I++Y DDT+++ E +N
Sbjct: 64 DGSDVPSWVAFDKQVLSFDAYLEEEVLDKSQTNYRIRYYKIYFYPEDDTIQVNEPEVKNS 123
Query: 250 GRDPFPLLMNRQRMPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKPLTMLGRTFF 429
G +L + + L D++ ++YT F VG + GRTF
Sbjct: 124 G---------------LLQGTSIRRHRITLPPPDED--QFYTVYHFNVGTEVVFYGRTFK 166
Query: 430 IYDCDPFTRQYYKEKFGISDLPRIDVSKKEPPPVKQELPPYNGYGLIEDSAQNCLALIPK 609
IYDCD FTR + + K G+ K PPV+ PY + + ++ L P
Sbjct: 167 IYDCDAFTRNFLR-KIGV----------KVNPPVQCPEDPY--MKIRREVVEHVEPLRPY 213
Query: 610 APKKDVIKVLMNDNKVLRYLAALESPIPEDKGRR-FVLSYFLATDMISIFEPPVRNSGII 786
+ + L K+L + + + RR +L YFL D I I E +SG
Sbjct: 214 ESLDTLKQFLQYHGKILCFFCLWDDSVSMFGDRRELILHYFLCDDTIEIKELLPHSSGRD 273
Query: 787 GGK-YLGRTK--------VVKPDSSMENPI----------------------------YY 855
K +L R+K V +P + + +Y
Sbjct: 274 ALKMFLRRSKLPKNCPPRVYQPGQITDRAVLNSYGDFIKNQADGYLFDRYKLGKVDQEFY 333
Query: 856 GPSDFFIGAVIEVFGHRFVILDSDDYVLKYMES 954
SD +G I V+G + ++ D D++ Y +S
Sbjct: 334 KDSDLSLGVTINVWGRKVLLYDCDEFTKSYYKS 366
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,959,730
Number of extensions: 1233097
Number of successful extensions: 3909
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3889
Number of HSP's successfully gapped: 8
Length of query: 370
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,868,908
Effective search space: 3955129528
Effective search space used: 3955129528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010020
(1110 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 432 e-118
>Sscrofa_Chr07
|| Length = 134764511
Score = 432 bits (218), Expect = e-118
Identities = 221/222 (99%)
Strand = Plus / Plus
Query: 317 agaacttccctcagtgtgtgctggaaatctctgatcaggaggtgctggaatggtacaccg 376
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 134013493 agaacttccctcagtgtgtgctggaaatctctgatcaggaggttctggaatggtacaccg 134013552
Query: 377 ccaaggacttcatcgtcggaaagccactcactatgctggggagaaccttcttcatttatg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134013553 ccaaggacttcatcgtcggaaagccactcactatgctggggagaaccttcttcatttatg 134013612
Query: 437 actgtgatccatttactcggcagtattacaaagagaagtttggcatctccgatctaccac 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134013613 actgtgatccatttactcggcagtattacaaagagaagtttggcatctccgatctaccac 134013672
Query: 497 gcattgacgtgagcaagaaggagccgcctcctgtgaaacagg 538
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134013673 gcattgacgtgagcaagaaggagccgcctcctgtgaaacagg 134013714
Score = 410 bits (207), Expect = e-112
Identities = 213/215 (99%)
Strand = Plus / Plus
Query: 678 ggaatcccccatcccggaagacaagggccgccggtttgtcttatcttattttctagccac 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134022548 ggaatcccccatcccggaagacaagggccgccggtttgtcttatcttattttctagccac 134022607
Query: 738 tgacatgatcagtatctttgagcctcctgttcgaaattcagggatcattgggggcaagta 797
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 134022608 tgacatgatcagtatctttgagcctcctgttcgaaattcggggatcattgggggcaagta 134022667
Query: 798 ccttggcagaactaaagttgtcaagcccgactcctccatggaaaaccccatctactatgg 857
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134022668 cctcggcagaactaaagttgtcaagcccgactcctccatggaaaaccccatctactatgg 134022727
Query: 858 ccccagtgacttcttcattggtgccgtgattgaag 892
|||||||||||||||||||||||||||||||||||
Sbjct: 134022728 ccccagtgacttcttcattggtgccgtgattgaag 134022762
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 122 aggtccttcgattctatgcaatctgggatgatacagacagcatgtttggtgaatgtcgga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134002129 aggtccttcgattctatgcaatctgggatgatacagacagcatgtttggtgaatgtcgga 134002188
Query: 182 cctacatcattcactattatctgatggacgacacagtggaaattctggaggtccacgaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134002189 cctacatcattcactattatctgatggacgacacagtggaaattctggaggtccacgaac 134002248
Query: 242 ggaatgacgggagagaccccttccccctcctgatgaaccgccagcgcatgcccaaggttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134002249 ggaatgacgggagagaccccttccccctcctgatgaaccgccagcgcatgcccaaggttt 134002308
Query: 302 tggtggagaatgcaa 316
|||||||||||||||
Sbjct: 134002309 tggtggagaatgcaa 134002323
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 891 agtgtttggccaccggtttgtcatcctcgattccgatgactatgttttgaaatacatgga 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134023319 agtgtttggccaccggtttgtcatcctcgattccgatgactatgttttgaaatacatgga 134023378
Query: 951 gagcaaccctgcccagttttccccagaagctctcctgtcaattcagaaccacattcgaag 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134023379 gagcaaccctgcccagttttccccagaagctctcctgtcaattcagaaccacattcgaag 134023438
Query: 1011 gcgagacactcctgcactggaactggacag 1040
||||||||||||||||||||||||||||||
Sbjct: 134023439 gcgagacactcctgcactggaactggacag 134023468
Score = 280 bits (141), Expect = 2e-72
Identities = 144/145 (99%)
Strand = Plus / Plus
Query: 535 caggaattgcctccctataatggttatggactcatcgaagactctgctcagaattgcttg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134015472 caggaattgcctccctataatggttatggactcatcgaagactctgctcagaattgcttg 134015531
Query: 595 gctctcattccaaaagctcccaaaaaagatgtcattaaagtgctgatgaatgacaacaag 654
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 134015532 gctctcattccaaaagctcccaaaaaagatgtcattaaaatgctgatgaatgacaacaag 134015591
Query: 655 gtgcttcgttatttggctgcactgg 679
|||||||||||||||||||||||||
Sbjct: 134015592 gtgcttcgttatttggctgcactgg 134015616
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 1 ttaaatccaccagagaagatggctcttgatccttacactgaactccggaagcagcctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133999788 ttaaatccaccagagaagatggctcttgatccttacactgaactccggaagcagcctctt 133999847
Query: 61 cgtaagtatgtgactccaacggactttgatcaactgaagcagtttctcacctttgacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133999848 cgtaagtatgtgactccaacggactttgatcaactgaagcagtttctcacctttgacaaa 133999907
Query: 121 caggt 125
|||||
Sbjct: 133999908 caggt 133999912
Score = 139 bits (70), Expect = 4e-30
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 1037 acagccagcggacagaaaaagacccaggcacacaggaactagaggtgctgattgacacga 1096
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 134039900 acagccagcggacagaaaaggacccaggcacacaggaactagaggtgctgattgacacga 134039959
Query: 1097 tccagaagcagctg 1110
||||||||||||||
Sbjct: 134039960 tccagaagcagctg 134039973
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,996,927
Number of extensions: 144
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 7
Length of query: 1110
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1089
Effective length of database: 2,808,413,156
Effective search space: 3058361926884
Effective search space used: 3058361926884
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)