Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010022
(999 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075089.1| tRNA-specific adenosine deaminase 1 [Bos tau... 522 e-148
Alignment gi|XP_002685172.1| PREDICTED: adenosine deaminase, RNA-specific... 77 3e-14
Alignment gi|XP_002702377.1| PREDICTED: adenosine deaminase, RNA-specific... 77 3e-14
Alignment gi|NP_001179517.1| double-stranded RNA-specific editase B2 [Bos... 62 8e-10
Alignment gi|XP_002692232.1| PREDICTED: adenosine deaminase, RNA-specific... 62 8e-10
Alignment gi|XP_002686059.1| PREDICTED: RNA adenosine deaminase-like [Bos... 59 5e-09
Alignment gi|XP_581374.4| PREDICTED: adenosine deaminase, RNA-specific [B... 59 5e-09
>ref|NP_001075089.1| tRNA-specific adenosine deaminase 1 [Bos taurus].
Length = 458
Score = 522 bits (1345), Expect = e-148
Identities = 252/301 (83%), Positives = 268/301 (89%)
Frame = +3
Query: 96 MWTADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKE 275
MWTADEIARLCYEHYGS+LPKQGKPEPNREWTLLAAVVKIQP ADQ CD D VQVTKE
Sbjct: 1 MWTADEIARLCYEHYGSKLPKQGKPEPNREWTLLAAVVKIQPTADQACDHSDGRVQVTKE 60
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEGSIFVPGT 455
VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLA LKE SIF+PG+
Sbjct: 61 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAAALKEDSIFLPGS 120
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASIIPMLESEDQPCCPVSRDWANNPSVEANNNLKAP 635
QRGLWKLRPD LFVFFSSHTPCGDASIIPMLE EDQPCCPVSRDWA+NPSVE ++NL+AP
Sbjct: 121 QRGLWKLRPDLLFVFFSSHTPCGDASIIPMLEFEDQPCCPVSRDWASNPSVETSDNLEAP 180
Query: 636 EGKRKCEDPDSPGTKKTRVEPGPPDGMTHHQSFDYQESGPVPPDVNSSHLTAEELATVPG 815
E KRKCEDP+SP TKK R+EP P G H QSF QE GP PPDV+SS+LTAEELA+V G
Sbjct: 181 EDKRKCEDPESPVTKKMRLEPRTPGGTAHRQSFGSQERGPNPPDVSSSNLTAEELASVTG 240
Query: 816 MAHSGAKVVDIYRTGAKCVPGKAGDLGGPGAAYHQVGLLRVKPGRGDRTLLMXCSDKLAR 995
M SGA+VVD+YRTGAKCVPG+AGD G PGAAYH+VGLLRVKPGRGDRT M CSDKLAR
Sbjct: 241 MTPSGAQVVDVYRTGAKCVPGEAGDSGQPGAAYHRVGLLRVKPGRGDRTRSMSCSDKLAR 300
Query: 996 W 998
W
Sbjct: 301 W 301
>ref|XP_002685172.1| PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)
[Bos taurus].
Length = 748
Score = 76.6 bits (187), Expect = 3e-14
Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 26/225 (11%)
Frame = +3
Query: 105 ADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKEVVS 284
AD +ARL + +G P R+ +LA +V V D +V+S
Sbjct: 324 ADAVARLVLDKFGDLTDSFASPHARRK--VLAGIV--MTTGTDVKDA---------KVIS 370
Query: 285 MGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEG---SIFVPGT 455
+ TGTKCI M G LND HAE+IARRS R+L QL + + K+ SIF +
Sbjct: 371 ISTGTKCINGEYMSDRGLALNDCHAEIIARRSLLRFLYTQLEIYLNSKDDQKRSIF-EKS 429
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASII----PMLE-------------SEDQPCC---- 572
+RG +KL+ + F + S +PCGDA I P+LE CC
Sbjct: 430 ERGGFKLKENVQFHLYISTSPCGDARIFSPHEPILEGTMPGSAAAAISQESSXLCCNREK 489
Query: 573 --PVSRDWANNPSVEANNNLKAPEGKRKCEDPDSPGTKKTRVEPG 701
P+ +P+V + E + + + G +T++E G
Sbjct: 490 DKPIPHAVIKDPTVSREPCVSVLEPADRHPNRKARGQLRTKIESG 534
>ref|XP_002702377.1| PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)
[Bos taurus].
Length = 748
Score = 76.6 bits (187), Expect = 3e-14
Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 26/225 (11%)
Frame = +3
Query: 105 ADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKEVVS 284
AD +ARL + +G P R+ +LA +V V D +V+S
Sbjct: 324 ADAVARLVLDKFGDLTDSFASPHARRK--VLAGIV--MTTGTDVKDA---------KVIS 370
Query: 285 MGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEG---SIFVPGT 455
+ TGTKCI M G LND HAE+IARRS R+L QL + + K+ SIF +
Sbjct: 371 ISTGTKCINGEYMSDRGLALNDCHAEIIARRSLLRFLYTQLEIYLNSKDDQKRSIF-EKS 429
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASII----PMLE-------------SEDQPCC---- 572
+RG +KL+ + F + S +PCGDA I P+LE CC
Sbjct: 430 ERGGFKLKENVQFHLYISTSPCGDARIFSPHEPILEGTMPGSAAAAISQESSXLCCNREK 489
Query: 573 --PVSRDWANNPSVEANNNLKAPEGKRKCEDPDSPGTKKTRVEPG 701
P+ +P+V + E + + + G +T++E G
Sbjct: 490 DKPIPHAVIKDPTVSREPCVSVLEPADRHPNRKARGQLRTKIESG 534
>ref|NP_001179517.1| double-stranded RNA-specific editase B2 [Bos taurus].
Length = 734
Score = 62.0 bits (149), Expect = 8e-10
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Frame = +3
Query: 273 EVVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLK----EGSI 440
+VV + +GTKCI + G ++ND HAE++ARR+ +L QL L ++ + E SI
Sbjct: 400 QVVVLSSGTKCISGEHINDQGLVVNDCHAEILARRALVHFLYAQLELHLSKRREDSERSI 459
Query: 441 FVPGTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
F + G ++LR LF + S +PCGDA +
Sbjct: 460 F-ERLKEGGFRLRDGVLFHLYLSASPCGDARL 490
>ref|XP_002692232.1| PREDICTED: adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)
[Bos taurus].
Length = 785
Score = 62.0 bits (149), Expect = 8e-10
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Frame = +3
Query: 273 EVVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLK----EGSI 440
+VV + +GTKCI + G ++ND HAE++ARR+ +L QL L ++ + E SI
Sbjct: 400 QVVVLSSGTKCISGEHINDQGLVVNDCHAEILARRALVHFLYAQLELHLSKRREDSERSI 459
Query: 441 FVPGTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
F + G ++LR LF + S +PCGDA +
Sbjct: 460 F-ERLKEGGFRLRDGVLFHLYLSASPCGDARL 490
>ref|XP_002686059.1| PREDICTED: RNA adenosine deaminase-like [Bos taurus].
Length = 1149
Score = 59.3 bits (142), Expect = 5e-09
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL--HLAVTLKEGSIFVP 449
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L + T K+ SIF P
Sbjct: 807 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNPQTAKD-SIFEP 865
Query: 450 GTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
+++ F + S PCGD ++
Sbjct: 866 AKGGEKLQIKKSVSFHLYISTAPCGDGAL 894
>ref|XP_581374.4| PREDICTED: adenosine deaminase, RNA-specific [Bos taurus].
Length = 1149
Score = 59.3 bits (142), Expect = 5e-09
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL--HLAVTLKEGSIFVP 449
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L + T K+ SIF P
Sbjct: 807 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNPQTAKD-SIFEP 865
Query: 450 GTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
+++ F + S PCGD ++
Sbjct: 866 AKGGEKLQIKKSVSFHLYISTAPCGDGAL 894
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,326,216
Number of extensions: 1356461
Number of successful extensions: 5451
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5363
Number of HSP's successfully gapped: 7
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010022
(999 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546826.2| PREDICTED: similar to adenosine deaminase, tRNA... 521 e-148
Alignment gi|XP_544931.2| PREDICTED: similar to RNA-specific adenosine de... 76 6e-14
Alignment gi|XP_547564.2| PREDICTED: similar to adenosine deaminase, RNA-... 60 2e-09
Alignment gi|XP_544281.2| PREDICTED: similar to Double-stranded RNA-speci... 57 4e-08
>ref|XP_546826.2| PREDICTED: similar to adenosine deaminase, tRNA-specific 1 [Canis
familiaris].
Length = 497
Score = 521 bits (1341), Expect = e-148
Identities = 250/301 (83%), Positives = 267/301 (88%)
Frame = +3
Query: 96 MWTADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKE 275
MWTADEIARLCYEHYG+RLPK+GKPEPNREWTLLAAVVK+Q AD C +RP QVTKE
Sbjct: 1 MWTADEIARLCYEHYGTRLPKKGKPEPNREWTLLAAVVKVQLVADWACGGSNRPTQVTKE 60
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEGSIFVPGT 455
VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYL +QLHLA LKE SIFVPGT
Sbjct: 61 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLHYQLHLAAALKEDSIFVPGT 120
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASIIPMLESEDQPCCPVSRDWANNPSVEANNNLKAP 635
QRGLWKLRPD LFVFFSSHTPCGDASIIPMLE EDQPCCPVSRDWANNPSVEA+ NL+AP
Sbjct: 121 QRGLWKLRPDLLFVFFSSHTPCGDASIIPMLEFEDQPCCPVSRDWANNPSVEADGNLEAP 180
Query: 636 EGKRKCEDPDSPGTKKTRVEPGPPDGMTHHQSFDYQESGPVPPDVNSSHLTAEELATVPG 815
E K+KCED SP TKK R+EPG PDG+ HHQSF QESGP+PP ++ S+LT +ELATV G
Sbjct: 181 ENKKKCEDLGSPVTKKMRLEPGIPDGVGHHQSFGNQESGPIPPSISGSNLTTQELATVTG 240
Query: 816 MAHSGAKVVDIYRTGAKCVPGKAGDLGGPGAAYHQVGLLRVKPGRGDRTLLMXCSDKLAR 995
MA SGAKVVD+YRTGAKCVPG+AGD G PGAAYHQVGLLRVKPGRGDRT M CSDKLAR
Sbjct: 241 MAPSGAKVVDVYRTGAKCVPGEAGDSGKPGAAYHQVGLLRVKPGRGDRTCSMSCSDKLAR 300
Query: 996 W 998
W
Sbjct: 301 W 301
>ref|XP_544931.2| PREDICTED: similar to RNA-specific adenosine deaminase B1 isoform
DRADA2a [Canis familiaris].
Length = 746
Score = 75.9 bits (185), Expect = 6e-14
Identities = 58/156 (37%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Frame = +3
Query: 105 ADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKEVVS 284
AD +ARL + +G P R+ +LA +V V D +V+S
Sbjct: 369 ADAVARLVLDKFGDLTDNFSSPHARRK--VLAGIV--MTTGTDVKDA---------KVIS 415
Query: 285 MGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEG---SIFVPGT 455
+ TGTKCI M G LND HAE+IARRS R+L QL L + K+ SIF +
Sbjct: 416 ISTGTKCINGEYMSDRGLALNDCHAEIIARRSLLRFLYTQLELYLNNKDDQKRSIF-QKS 474
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASII----PMLE 551
+RG +KL+ F + S +PCGDA I P+LE
Sbjct: 475 ERGGFKLKETVQFHLYISTSPCGDARIFSPHEPILE 510
>ref|XP_547564.2| PREDICTED: similar to adenosine deaminase, RNA-specific isoform b
[Canis familiaris].
Length = 1119
Score = 60.5 bits (145), Expect = 2e-09
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL--HLAVTLKEGSIFVP 449
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L + T KE SIF P
Sbjct: 777 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNPQTAKE-SIFEP 835
Query: 450 GTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
+++ F + S PCGD ++
Sbjct: 836 AKGGEKLQIKKSVSFHLYISTAPCGDGAL 864
>ref|XP_544281.2| PREDICTED: similar to Double-stranded RNA-specific editase B2
(dsRNA adenosine deaminase B2) (RNA dependent adenosine
deaminase 3) (RNA editing deaminase 2) (RNA editing
enzyme 2) [Canis familiaris].
Length = 784
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Frame = +3
Query: 273 EVVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLK----EGSI 440
+VV + +GTKCI + G ++ND HAE++ARR+ ++ QL L ++ + E SI
Sbjct: 447 QVVVLSSGTKCISGEYLNDQGLVVNDCHAEIVARRALVHFMYAQLELHLSKRREDSEHSI 506
Query: 441 FVPGTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
F ++ G ++LR + LF + S + C DA +
Sbjct: 507 F-ERSKDGGYRLRDNVLFHLYVSTSSCRDARL 537
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,106,707
Number of extensions: 1386855
Number of successful extensions: 5272
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5217
Number of HSP's successfully gapped: 4
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010022
(999 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126906.1| PREDICTED: tRNA-specific adenosine deaminase... 625 e-179
Alignment gi|XP_003132836.2| PREDICTED: LOW QUALITY PROTEIN: double-stran... 80 2e-15
Alignment gi|XP_003130894.2| PREDICTED: double-stranded RNA-specific edit... 66 3e-11
Alignment gi|XP_003125793.1| PREDICTED: double-stranded RNA-specific aden... 59 5e-09
Alignment gi|XP_003135478.1| PREDICTED: tRNA-specific adenosine deaminase... 58 9e-09
>ref|XP_003126906.1| PREDICTED: tRNA-specific adenosine deaminase 1 [Sus scrofa].
Length = 497
Score = 625 bits (1611), Expect = e-179
Identities = 297/301 (98%), Positives = 298/301 (99%)
Frame = +3
Query: 96 MWTADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKE 275
MWTADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKE
Sbjct: 1 MWTADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKE 60
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEGSIFVPGT 455
VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEGSIFVPGT
Sbjct: 61 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEGSIFVPGT 120
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASIIPMLESEDQPCCPVSRDWANNPSVEANNNLKAP 635
QRGLWKLRPDTLFVFFSSHTPCGDASIIPMLESEDQPCCPVSRDWANNPSVEANNNLKAP
Sbjct: 121 QRGLWKLRPDTLFVFFSSHTPCGDASIIPMLESEDQPCCPVSRDWANNPSVEANNNLKAP 180
Query: 636 EGKRKCEDPDSPGTKKTRVEPGPPDGMTHHQSFDYQESGPVPPDVNSSHLTAEELATVPG 815
EGKRKCEDPDSPGTKKTRVEPGPPDGMTHHQSFDYQESGPVPPDVNSSHLTAEELATVPG
Sbjct: 181 EGKRKCEDPDSPGTKKTRVEPGPPDGMTHHQSFDYQESGPVPPDVNSSHLTAEELATVPG 240
Query: 816 MAHSGAKVVDIYRTGAKCVPGKAGDLGGPGAAYHQVGLLRVKPGRGDRTLLMXCSDKLAR 995
MAHSGAKVVDIYRTGAKCVPG+AGDLGGPGAAYHQVGLLRVKPGRGDRT M CSDKLAR
Sbjct: 241 MAHSGAKVVDIYRTGAKCVPGEAGDLGGPGAAYHQVGLLRVKPGRGDRTCSMSCSDKLAR 300
Query: 996 W 998
W
Sbjct: 301 W 301
>ref|XP_003132836.2| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase 1-like [Sus scrofa].
Length = 650
Score = 80.1 bits (196), Expect = 2e-15
Identities = 60/156 (38%), Positives = 81/156 (51%), Gaps = 7/156 (4%)
Frame = +3
Query: 105 ADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKEVVS 284
AD +ARL + +G P R+ +LA VV V D +V+S
Sbjct: 273 ADAVARLVLDKFGDLTDNFASPHARRK--VLAGVV--MTTGTDVKDA---------KVIS 319
Query: 285 MGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTL---KEGSIFVPGT 455
+ TGTKCI M G LND HAE+IARRS R+L QL L ++ K+ SIF P +
Sbjct: 320 VSTGTKCINGEYMSDRGLALNDCHAEIIARRSLLRFLYTQLELYLSSRDDKKRSIFEP-S 378
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASII----PMLE 551
+RG +KL+ + F + S +PCGDA I P+LE
Sbjct: 379 ERGGFKLKENVQFHLYISTSPCGDARIFSPHEPILE 414
>ref|XP_003130894.2| PREDICTED: double-stranded RNA-specific editase B2-like [Sus
scrofa].
Length = 1000
Score = 65.9 bits (159), Expect = 3e-11
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Frame = +3
Query: 273 EVVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLK----EGSI 440
+VV + +GTKCI + G ++ND HAEV+ARR+ +L QL L ++ + E SI
Sbjct: 666 QVVVLSSGTKCISGEHLNDRGLVVNDGHAEVLARRALLHFLYTQLELHLSKRREDGERSI 725
Query: 441 FVPGTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
FV + G ++LR + LF + S +PCGDA +
Sbjct: 726 FV-RLKEGGYRLRDNVLFHLYVSASPCGDARL 756
>ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase, partial
[Sus scrofa].
Length = 1171
Score = 58.5 bits (140), Expect = 5e-09
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL--HLAVTLKEGSIFVP 449
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L + T K+ SIF P
Sbjct: 829 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNPHTAKD-SIFEP 887
Query: 450 GTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
+++ F + S PCGD ++
Sbjct: 888 ARGGEKLQIKKTVSFHLYISTAPCGDGAL 916
>ref|XP_003135478.1| PREDICTED: tRNA-specific adenosine deaminase 1-like [Sus scrofa].
Length = 105
Score = 57.8 bits (138), Expect = 9e-09
Identities = 27/51 (52%), Positives = 30/51 (58%)
Frame = +3
Query: 96 MWTADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCP 248
MWT A LCYE YGSRLP+ KPEPNREW LLA + + C P
Sbjct: 1 MWTVGATAWLCYEPYGSRLPEHQKPEPNREWMLLAGSREHSSFSSGCCGSP 51
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,940,587
Number of extensions: 873580
Number of successful extensions: 3339
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3311
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010022
(999 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038953.1| tRNA-specific adenosine deaminase 1 [Mus muscul... 451 e-127
Alignment gi|NP_001020008.1| double-stranded RNA-specific editase 1 isofo... 71 1e-12
Alignment gi|NP_570965.2| double-stranded RNA-specific editase 1 isoform ... 70 3e-12
Alignment gi|NP_443209.2| double-stranded RNA-specific editase B2 [Mus mu... 66 5e-11
Alignment gi|NP_001033676.2| double-stranded RNA-specific adenosine deami... 55 1e-07
Alignment gi|NP_062629.3| double-stranded RNA-specific adenosine deaminas... 55 1e-07
Alignment gi|NP_001139768.1| double-stranded RNA-specific adenosine deami... 55 1e-07
>ref|NP_038953.1| tRNA-specific adenosine deaminase 1 [Mus musculus].
Length = 499
Score = 451 bits (1160), Expect = e-127
Identities = 224/306 (73%), Positives = 246/306 (80%), Gaps = 5/306 (1%)
Frame = +3
Query: 96 MWTADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKE 275
MWTADEIA+LCY HY RLPKQGKPEPNREWTLLAAVVKIQ +A+Q CD P++ VQVTKE
Sbjct: 1 MWTADEIAQLCYAHYNVRLPKQGKPEPNREWTLLAAVVKIQASANQACDIPEKEVQVTKE 60
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEGSIFVPGT 455
VVSMGTGTKCIGQSKMR+SGDILNDSHAE+IARRSFQRYLLHQLHLA LKE SIFVPGT
Sbjct: 61 VVSMGTGTKCIGQSKMRESGDILNDSHAEIIARRSFQRYLLHQLHLAAVLKEDSIFVPGT 120
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASIIPMLESEDQPCCPVSRDWANNPSVEANNNLKAP 635
QRGLW+LRPD FVFFSSHTPCGDASIIPMLE E+QPCCPV R WANN V+ NL+
Sbjct: 121 QRGLWRLRPDLSFVFFSSHTPCGDASIIPMLEFEEQPCCPVIRSWANNSPVQETENLEDS 180
Query: 636 EGKRKCEDPDSPGTKKTRVEPGPP-----DGMTHHQSFDYQESGPVPPDVNSSHLTAEEL 800
+ KR CEDP SP KK R+ G P + + HH + QESGPV PDV+SS LT EE
Sbjct: 181 KDKRNCEDPASPVAKKMRL--GTPARSLSNCVAHHGT---QESGPVKPDVSSSDLTKEEP 235
Query: 801 ATVPGMAHSGAKVVDIYRTGAKCVPGKAGDLGGPGAAYHQVGLLRVKPGRGDRTLLMXCS 980
G+A +VVD+YRTGAKCVPG+ GDL PGAAYHQVGLLRVKPGRGDRT M CS
Sbjct: 236 DAANGIASGSFRVVDVYRTGAKCVPGETGDLREPGAAYHQVGLLRVKPGRGDRTCSMSCS 295
Query: 981 DKLARW 998
DK+ARW
Sbjct: 296 DKMARW 301
>ref|NP_001020008.1| double-stranded RNA-specific editase 1 isoform 2 [Mus musculus].
Length = 711
Score = 70.9 bits (172), Expect = 1e-12
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 7/126 (5%)
Frame = +3
Query: 273 EVVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEG---SIF 443
+V+S+ TGTKCI M G LND HAE+I+RRS R+L QL L + KE SIF
Sbjct: 367 KVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYAQLELYLNNKEDQKKSIF 426
Query: 444 VPGTQRGLWKLRPDTLFVFFSSHTPCGDASII----PMLESEDQPCCPVSRDWANNPSVE 611
++RG ++L+ F + S +PCGDA I P+LE ++ +P+ +
Sbjct: 427 -QKSERGGFRLKDTVQFHLYISTSPCGDARIFSPHEPVLEGMTPDSHQLTEPADRHPNRK 485
Query: 612 ANNNLK 629
A L+
Sbjct: 486 ARGQLR 491
>ref|NP_570965.2| double-stranded RNA-specific editase 1 isoform 1 [Mus musculus].
Length = 701
Score = 69.7 bits (169), Expect = 3e-12
Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 7/100 (7%)
Frame = +3
Query: 273 EVVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEG---SIF 443
+V+S+ TGTKCI M G LND HAE+I+RRS R+L QL L + KE SIF
Sbjct: 367 KVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYAQLELYLNNKEDQKKSIF 426
Query: 444 VPGTQRGLWKLRPDTLFVFFSSHTPCGDASII----PMLE 551
++RG ++L+ F + S +PCGDA I P+LE
Sbjct: 427 -QKSERGGFRLKDTVQFHLYISTSPCGDARIFSPHEPVLE 465
>ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus].
Length = 745
Score = 65.9 bits (159), Expect = 5e-11
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Frame = +3
Query: 273 EVVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTL----KEGSI 440
+V+ + +GTKCI + G ++ND HAE++ARR+F +L QL L ++ E SI
Sbjct: 411 QVIVLSSGTKCISGEHISDQGLVVNDCHAEIVARRAFLHFLYSQLELHLSKHQEDPERSI 470
Query: 441 FVPGTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
F+ + G ++LR + LF + S +PCGDA +
Sbjct: 471 FI-RLKEGGYRLRENILFHLYVSTSPCGDARV 501
>ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus
musculus].
Length = 930
Score = 54.7 bits (130), Expect = 1e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL-----HLAVTLKEGSI 440
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L H A + SI
Sbjct: 585 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNHHTA----KNSI 640
Query: 441 FVPGTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
F +++ F + S PCGD ++
Sbjct: 641 FELARGGEKLQIKKTVSFHLYISTAPCGDGAL 672
>ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus
musculus].
Length = 1152
Score = 54.7 bits (130), Expect = 1e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL-----HLAVTLKEGSI 440
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L H A + SI
Sbjct: 807 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNHHTA----KNSI 862
Query: 441 FVPGTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
F +++ F + S PCGD ++
Sbjct: 863 FELARGGEKLQIKKTVSFHLYISTAPCGDGAL 894
>ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus
musculus].
Length = 1178
Score = 54.7 bits (130), Expect = 1e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL-----HLAVTLKEGSI 440
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L H A + SI
Sbjct: 833 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNHHTA----KNSI 888
Query: 441 FVPGTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
F +++ F + S PCGD ++
Sbjct: 889 FELARGGEKLQIKKTVSFHLYISTAPCGDGAL 920
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,531,125
Number of extensions: 1146299
Number of successful extensions: 4327
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4288
Number of HSP's successfully gapped: 7
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010022
(999 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036223.2| tRNA-specific adenosine deaminase 1 [Homo sapie... 488 e-138
Alignment gi|NP_056649.1| double-stranded RNA-specific editase 1 isoform ... 79 8e-15
Alignment gi|NP_056648.1| double-stranded RNA-specific editase 1 isoform ... 79 8e-15
Alignment gi|NP_001153702.1| double-stranded RNA-specific editase 1 isofo... 72 8e-13
Alignment gi|NP_001103.1| double-stranded RNA-specific editase 1 isoform ... 72 8e-13
Alignment gi|NP_061172.1| double-stranded RNA-specific editase B2 [Homo s... 69 7e-12
Alignment gi|NP_001180424.1| double-stranded RNA-specific adenosine deami... 60 4e-09
Alignment gi|NP_001020278.1| double-stranded RNA-specific adenosine deami... 60 4e-09
Alignment gi|NP_056656.2| double-stranded RNA-specific adenosine deaminas... 60 4e-09
Alignment gi|NP_056655.2| double-stranded RNA-specific adenosine deaminas... 60 4e-09
>ref|NP_036223.2| tRNA-specific adenosine deaminase 1 [Homo sapiens].
Length = 502
Score = 488 bits (1256), Expect = e-138
Identities = 235/306 (76%), Positives = 261/306 (85%), Gaps = 5/306 (1%)
Frame = +3
Query: 96 MWTADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKE 275
MWTADEIA+LCYEHYG RLPK+GKPEPN EWTLLAAVVKIQ AD+ CD PD+PVQVTKE
Sbjct: 1 MWTADEIAQLCYEHYGIRLPKKGKPEPNHEWTLLAAVVKIQSPADKACDTPDKPVQVTKE 60
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEGSIFVPGT 455
VVSMGTGTKCIGQSKMRK+GDILNDSHAEVIARRSFQRYLLHQL LA TLKE SIFVPGT
Sbjct: 61 VVSMGTGTKCIGQSKMRKNGDILNDSHAEVIARRSFQRYLLHQLQLAATLKEDSIFVPGT 120
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASIIPMLESEDQPCCPVSRDWANNPSVEANNNLKAP 635
Q+G+WKLR D +FVFFSSHTPCGDASIIPMLE EDQPCCPV R+WA+N SVEA++NL+AP
Sbjct: 121 QKGVWKLRRDLIFVFFSSHTPCGDASIIPMLEFEDQPCCPVFRNWAHNSSVEASSNLEAP 180
Query: 636 EGKRKCEDPDSPGTKKTRVEPGP-----PDGMTHHQSFDYQESGPVPPDVNSSHLTAEEL 800
+RKCEDPDSP TKK R+EPG +G HHQSF Q+SGP+ P ++S LT E L
Sbjct: 181 GNERKCEDPDSPVTKKMRLEPGTAAREVTNGAAHHQSFGKQKSGPISPGIHSCDLTVEGL 240
Query: 801 ATVPGMAHSGAKVVDIYRTGAKCVPGKAGDLGGPGAAYHQVGLLRVKPGRGDRTLLMXCS 980
ATV +A AKV+D+YRTGAKCVPG+AGD G PGAA+HQVGLLRVKPGRGDRT M CS
Sbjct: 241 ATVTRIAPGSAKVIDVYRTGAKCVPGEAGDSGKPGAAFHQVGLLRVKPGRGDRTRSMSCS 300
Query: 981 DKLARW 998
DK+ARW
Sbjct: 301 DKMARW 306
>ref|NP_056649.1| double-stranded RNA-specific editase 1 isoform 3 [Homo sapiens].
Length = 714
Score = 78.6 bits (192), Expect = 8e-15
Identities = 84/301 (27%), Positives = 122/301 (40%), Gaps = 3/301 (0%)
Frame = +3
Query: 105 ADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKEVVS 284
AD ++RL +G P R+ +LA VV V D +V+S
Sbjct: 324 ADAVSRLVLGKFGDLTDNFSSPHARRK--VLAGVV--MTTGTDVKDA---------KVIS 370
Query: 285 MGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEG---SIFVPGT 455
+ TGTKCI M G LND HAE+I+RRS R+L QL L + K+ SIF +
Sbjct: 371 VSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIF-QKS 429
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASIIPMLESEDQPCCPVSRDWANNPSVEANNNLKAP 635
+RG ++L+ + F + S +PCGDA I S +P SR +
Sbjct: 430 ERGGFRLKENVQFHLYISTSPCGDARIF----SPHEPILEGSRSYTQ------------- 472
Query: 636 EGKRKCEDPDSPGTKKTRVEPGPPDGMTHHQSFDYQESGPVPPDVNSSHLTAEELATVPG 815
G + C ++P PP ++ + +Q +G T P
Sbjct: 473 AGVQWCNHGS--------LQPRPPGLLSDPSTSTFQGAG----------------TTEPA 508
Query: 816 MAHSGAKVVDIYRTGAKCVPGKAGDLGGPGAAYHQVGLLRVKPGRGDRTLLMXCSDKLAR 995
H K RT + G + + G+L +G+R L M CSDK+AR
Sbjct: 509 DRHPNRKARGQLRTKIESGEGTI-PVRSNASIQTWDGVL-----QGERLLTMSCSDKIAR 562
Query: 996 W 998
W
Sbjct: 563 W 563
>ref|NP_056648.1| double-stranded RNA-specific editase 1 isoform 2 [Homo sapiens].
Length = 741
Score = 78.6 bits (192), Expect = 8e-15
Identities = 84/301 (27%), Positives = 122/301 (40%), Gaps = 3/301 (0%)
Frame = +3
Query: 105 ADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKEVVS 284
AD ++RL +G P R+ +LA VV V D +V+S
Sbjct: 324 ADAVSRLVLGKFGDLTDNFSSPHARRK--VLAGVV--MTTGTDVKDA---------KVIS 370
Query: 285 MGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEG---SIFVPGT 455
+ TGTKCI M G LND HAE+I+RRS R+L QL L + K+ SIF +
Sbjct: 371 VSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIF-QKS 429
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASIIPMLESEDQPCCPVSRDWANNPSVEANNNLKAP 635
+RG ++L+ + F + S +PCGDA I S +P SR +
Sbjct: 430 ERGGFRLKENVQFHLYISTSPCGDARIF----SPHEPILEGSRSYTQ------------- 472
Query: 636 EGKRKCEDPDSPGTKKTRVEPGPPDGMTHHQSFDYQESGPVPPDVNSSHLTAEELATVPG 815
G + C ++P PP ++ + +Q +G T P
Sbjct: 473 AGVQWCNHGS--------LQPRPPGLLSDPSTSTFQGAG----------------TTEPA 508
Query: 816 MAHSGAKVVDIYRTGAKCVPGKAGDLGGPGAAYHQVGLLRVKPGRGDRTLLMXCSDKLAR 995
H K RT + G + + G+L +G+R L M CSDK+AR
Sbjct: 509 DRHPNRKARGQLRTKIESGEGTI-PVRSNASIQTWDGVL-----QGERLLTMSCSDKIAR 562
Query: 996 W 998
W
Sbjct: 563 W 563
>ref|NP_001153702.1| double-stranded RNA-specific editase 1 isoform 7 [Homo sapiens].
Length = 674
Score = 72.0 bits (175), Expect = 8e-13
Identities = 56/156 (35%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Frame = +3
Query: 105 ADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKEVVS 284
AD ++RL +G P R+ +LA VV V D +V+S
Sbjct: 324 ADAVSRLVLGKFGDLTDNFSSPHARRK--VLAGVV--MTTGTDVKDA---------KVIS 370
Query: 285 MGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEG---SIFVPGT 455
+ TGTKCI M G LND HAE+I+RRS R+L QL L + K+ SIF +
Sbjct: 371 VSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIF-QKS 429
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASII----PMLE 551
+RG ++L+ + F + S +PCGDA I P+LE
Sbjct: 430 ERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILE 465
>ref|NP_001103.1| double-stranded RNA-specific editase 1 isoform 1 [Homo sapiens].
Length = 701
Score = 72.0 bits (175), Expect = 8e-13
Identities = 56/156 (35%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Frame = +3
Query: 105 ADEIARLCYEHYGSRLPKQGKPEPNREWTLLAAVVKIQPAADQVCDCPDRPVQVTKEVVS 284
AD ++RL +G P R+ +LA VV V D +V+S
Sbjct: 324 ADAVSRLVLGKFGDLTDNFSSPHARRK--VLAGVV--MTTGTDVKDA---------KVIS 370
Query: 285 MGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLKEG---SIFVPGT 455
+ TGTKCI M G LND HAE+I+RRS R+L QL L + K+ SIF +
Sbjct: 371 VSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIF-QKS 429
Query: 456 QRGLWKLRPDTLFVFFSSHTPCGDASII----PMLE 551
+RG ++L+ + F + S +PCGDA I P+LE
Sbjct: 430 ERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILE 465
>ref|NP_061172.1| double-stranded RNA-specific editase B2 [Homo sapiens].
Length = 739
Score = 68.9 bits (167), Expect = 7e-12
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Frame = +3
Query: 273 EVVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQLHLAVTLK----EGSI 440
+VV++ +GTKCI + G ++ND HAEV+ARR+F +L QL L ++ + E SI
Sbjct: 405 QVVALSSGTKCISGEHLSDQGLVVNDCHAEVVARRAFLHFLYTQLELHLSKRREDSERSI 464
Query: 441 FVPGTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
FV + G ++LR + LF + S +PCGDA +
Sbjct: 465 FV-RLKEGGYRLRENILFHLYVSTSPCGDARL 495
>ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens].
Length = 931
Score = 59.7 bits (143), Expect = 4e-09
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL--HLAVTLKEGSIFVP 449
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L + + T K+ SIF P
Sbjct: 589 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNSQTAKD-SIFEP 647
Query: 450 GTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
+++ F + S PCGD ++
Sbjct: 648 AKGGEKLQIKKTVSFHLYISTAPCGDGAL 676
>ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens].
Length = 931
Score = 59.7 bits (143), Expect = 4e-09
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL--HLAVTLKEGSIFVP 449
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L + + T K+ SIF P
Sbjct: 589 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNSQTAKD-SIFEP 647
Query: 450 GTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
+++ F + S PCGD ++
Sbjct: 648 AKGGEKLQIKKTVSFHLYISTAPCGDGAL 676
>ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo
sapiens].
Length = 1181
Score = 59.7 bits (143), Expect = 4e-09
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL--HLAVTLKEGSIFVP 449
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L + + T K+ SIF P
Sbjct: 839 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNSQTAKD-SIFEP 897
Query: 450 GTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
+++ F + S PCGD ++
Sbjct: 898 AKGGEKLQIKKTVSFHLYISTAPCGDGAL 926
>ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo
sapiens].
Length = 1200
Score = 59.7 bits (143), Expect = 4e-09
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +3
Query: 276 VVSMGTGTKCIGQSKMRKSGDILNDSHAEVIARRSFQRYLLHQL--HLAVTLKEGSIFVP 449
VVS+GTG +C+ + G+ +ND HAE+I+RR F R+L +L + + T K+ SIF P
Sbjct: 858 VVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNSQTAKD-SIFEP 916
Query: 450 GTQRGLWKLRPDTLFVFFSSHTPCGDASI 536
+++ F + S PCGD ++
Sbjct: 917 AKGGEKLQIKKTVSFHLYISTAPCGDGAL 945
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,351,683
Number of extensions: 1369193
Number of successful extensions: 5403
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5337
Number of HSP's successfully gapped: 11
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010022
(999 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 900 0.0
Sscrofa_ChrX 111 7e-22
>Sscrofa_Chr06
|| Length = 157765593
Score = 900 bits (454), Expect = 0.0
Identities = 476/481 (98%), Gaps = 2/481 (0%)
Strand = Plus / Plus
Query: 520 gtggcgatgcctccatcattccaatgcttgagtctgaagatcagccttgctgtcctgtca 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11926255 gtggcgatgcctccatcattccaatgcttgagtctgaagatcagccttgctgtcctgtca 11926314
Query: 580 gcagagattgggccaataacccatcagtggaagccaataataacctaaaagcccccgaag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11926315 gcagagattgggccaataacccatcagtggaagccaataataacctaaaagcccccgaag 11926374
Query: 640 gtaaaaggaaatgtgaagacccagatagtcctgggaccaaaaagacgagggttgagccgg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11926375 gtaaaaggaaatgtgaagacccagatagtcctgggaccaaaaagacgagggttgagccgg 11926434
Query: 700 ggcctcctgatggtatgactcaccatcagagttttgactatcaggaaagtggcccagtcc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11926435 ggcctcctgatggtatgactcaccatcagagttttgactatcaggaaagtggcccagtcc 11926494
Query: 760 caccagatgtcaacagctctcatctcactgcagaggaactggctaccgtccctggaatgg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11926495 caccagatgtcaacagctctcatctcactgcagaggaactggctaccgtccctggaatgg 11926554
Query: 820 cccacagtggtgccaaagtggtggacatttatagaactggagctaagtgtgtgcctggaa 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11926555 cccacagtggtgccaaagtggtggacatttatagaactggagctaagtgtgtgcctggag 11926614
Query: 880 aagctggtgacttgggagggcctggtgctgcgtatcaccaagtaggactgctccgcgtga 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11926615 aagctggtgacttgggagggcctggtgctgcgtatcaccaagtaggactgctccgcgtga 11926674
Query: 940 agccaggccgaggggacaggactttgct-catgntctgcagtgacaagttggcacggtgg 998
|||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct: 11926675 agccaggccgaggggacaggac-ttgctccatgtcctgcagtgacaagttggcacggtgg 11926733
Query: 999 a 999
|
Sbjct: 11926734 a 11926734
Score = 375 bits (189), Expect = e-101
Identities = 192/193 (99%)
Strand = Plus / Plus
Query: 72 agggcctcaacactagctcacaccatgtggacggcggatgagattgcacggctgtgttac 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11920342 agggcctcaacactagctcacaccatgtggacggcggatgagattgcacggctgtgttac 11920401
Query: 132 gagcactatgggagcaggctgcccaagcaagggaagcctgagcccaaccgtgagtggacg 191
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11920402 gagcactatgggagcaggctgcccaagcaagggaagcctgagcccaaccgcgagtggacg 11920461
Query: 192 ctgctcgcagccgtggtgaagatacaacctgcagctgaccaggtctgcgactgccctgac 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11920462 ctgctcgcagccgtggtgaagatacaacctgcagctgaccaggtctgcgactgccctgac 11920521
Query: 252 agacccgtgcaag 264
|||||||||||||
Sbjct: 11920522 agacccgtgcaag 11920534
Score = 268 bits (135), Expect = 5e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 387 aggtacctcctccatcagctgcacttggcggtcactctgaaggagggtagcatctttgtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11922507 aggtacctcctccatcagctgcacttggcggtcactctgaaggagggtagcatctttgtc 11922566
Query: 447 ccaggaactcagagaggactgtggaaactcagaccagacaccttgtttgtgtttttctcc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11922567 ccaggaactcagagaggactgtggaaactcagaccagacaccttgtttgtgtttttctcc 11922626
Query: 507 agccatacaccctgt 521
|||||||||||||||
Sbjct: 11922627 agccatacaccctgt 11922641
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 263 agtgacaaaagaagttgtctcaatgggaacaggaaccaaatgcataggccagtccaaaat 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11920805 agtgacaaaagaagttgtctcaatgggaacaggaaccaaatgcataggccagtccaaaat 11920864
Query: 323 gaggaagagcgg 334
||||||||||||
Sbjct: 11920865 gaggaagagcgg 11920876
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 333 ggagacatcctcaatgatagccatgccgaggtcatagccagaagaagtttccagaggta 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11921832 ggagacatcctcaatgatagccatgccgaggtcatagccagaagaagtttccagaggta 11921890
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 42 tcttcctcccttcgagagcgcgtgtcgaggagg 74
|||||||||||||||||||||||||||||||||
Sbjct: 11917283 tcttcctcccttcgagagcgcgtgtcgaggagg 11917315
>Sscrofa_ChrX
|| Length = 144288218
Score = 111 bits (56), Expect = 7e-22
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 82 cactagctcacaccatgtggacggcggatgagattgcacggctgtgttacgagcactatg 141
|||||||||||||||||||||| | || || || ||| |||||||||| |||| ||| |
Sbjct: 131431138 cactagctcacaccatgtggactgtgggtgcgactgcgtggctgtgttatgagccctacg 131431197
Query: 142 ggagcaggctgcccaagcaagggaagcctgagcccaaccgtgagtggacgctgctcgcag 201
|||||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||
Sbjct: 131431198 ggagcaggctgcccgagcaccagaagcctgagcccaaccgcgagtggatgctgctcgcag 131431257
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,420,490
Number of extensions: 150
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 7
Length of query: 999
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 978
Effective length of database: 2,808,413,156
Effective search space: 2746628066568
Effective search space used: 2746628066568
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)