Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010070
(1299 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192601.1| cirhin [Bos taurus]. 758 0.0
Alignment gi|XP_002694881.1| PREDICTED: spermatid WD-repeat protein-like ... 758 0.0
Alignment gi|NP_001033186.1| WD repeat-containing protein 61 [Bos taurus]. 57 4e-08
Alignment gi|NP_001039847.1| U5 small nuclear ribonucleoprotein 40 kDa pr... 55 2e-07
Alignment gi|NP_001040084.1| transducin beta-like protein 3 [Bos taurus]. 51 2e-06
Alignment gi|NP_001193505.1| echinoderm microtubule-associated protein-li... 51 3e-06
Alignment gi|XP_874777.3| PREDICTED: zinedin isoform 2 [Bos taurus]. 50 6e-06
Alignment gi|NP_001193033.1| striatin [Bos taurus]. 49 8e-06
Alignment gi|XP_002691328.1| PREDICTED: striatin, calmodulin binding prot... 49 8e-06
>ref|NP_001192601.1| cirhin [Bos taurus].
Length = 686
Score = 758 bits (1957), Expect(2) = 0.0
Identities = 373/390 (95%), Positives = 381/390 (97%)
Frame = +1
Query: 70 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 249
MGEF VHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
Sbjct: 1 MGEFNVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 60
Query: 250 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGC 429
RATEALCWAKGQRLFSAGLNGEIIEYDLQAL +KYAVDAFGGPIWSMAASP+ SQLLVGC
Sbjct: 61 RATEALCWAKGQRLFSAGLNGEIIEYDLQALTIKYAVDAFGGPIWSMAASPNASQLLVGC 120
Query: 430 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAIH 609
EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHP+GTH+AAGSIDYISVFD KSGSAI
Sbjct: 121 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPAGTHVAAGSIDYISVFDSKSGSAIG 180
Query: 610 KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQ 789
KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQ WDSATGTLVKNHL++NADVQ
Sbjct: 181 KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQIWDSATGTLVKNHLVSNADVQ 240
Query: 790 SIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 969
SIA+S QEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTAL
Sbjct: 241 SIAVSPQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 300
Query: 970 ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRL 1149
ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLV CAKKKQLLLFQFAHHLELWRL
Sbjct: 301 ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVSCAKKKQLLLFQFAHHLELWRL 360
Query: 1150 GSTVATGKHGDTLPLSKNADHLLHLKTKAP 1239
GSTVATGK+GDTLPLSKNADHLLHLKTK P
Sbjct: 361 GSTVATGKNGDTLPLSKNADHLLHLKTKGP 390
Score = 47.8 bits (112), Expect(2) = 0.0
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +3
Query: 1230 KGPENIICSCISPCGKWVGYSTA 1298
KGPENIICSCISPCG W+ STA
Sbjct: 388 KGPENIICSCISPCGGWIACSTA 410
>ref|XP_002694881.1| PREDICTED: spermatid WD-repeat protein-like [Bos taurus].
Length = 686
Score = 758 bits (1957), Expect(2) = 0.0
Identities = 373/390 (95%), Positives = 381/390 (97%)
Frame = +1
Query: 70 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 249
MGEF VHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
Sbjct: 1 MGEFNVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 60
Query: 250 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGC 429
RATEALCWAKGQRLFSAGLNGEIIEYDLQAL +KYAVDAFGGPIWSMAASP+ SQLLVGC
Sbjct: 61 RATEALCWAKGQRLFSAGLNGEIIEYDLQALTIKYAVDAFGGPIWSMAASPNASQLLVGC 120
Query: 430 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAIH 609
EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHP+GTH+AAGSIDYISVFD KSGSAI
Sbjct: 121 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPAGTHVAAGSIDYISVFDSKSGSAIG 180
Query: 610 KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQ 789
KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQ WDSATGTLVKNHL++NADVQ
Sbjct: 181 KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQIWDSATGTLVKNHLVSNADVQ 240
Query: 790 SIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 969
SIA+S QEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTAL
Sbjct: 241 SIAVSPQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 300
Query: 970 ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRL 1149
ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLV CAKKKQLLLFQFAHHLELWRL
Sbjct: 301 ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVSCAKKKQLLLFQFAHHLELWRL 360
Query: 1150 GSTVATGKHGDTLPLSKNADHLLHLKTKAP 1239
GSTVATGK+GDTLPLSKNADHLLHLKTK P
Sbjct: 361 GSTVATGKNGDTLPLSKNADHLLHLKTKGP 390
Score = 47.8 bits (112), Expect(2) = 0.0
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +3
Query: 1230 KGPENIICSCISPCGKWVGYSTA 1298
KGPENIICSCISPCG W+ STA
Sbjct: 388 KGPENIICSCISPCGGWIACSTA 410
>ref|NP_001033186.1| WD repeat-containing protein 61 [Bos taurus].
Length = 305
Score = 57.0 bits (136), Expect = 4e-08
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +1
Query: 295 SAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKI 474
S+ L+ I +DL+ ++DA W++A SP L G G V +F + K
Sbjct: 81 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140
Query: 475 QFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
++ + D + ILS+++ P G ++A+G+ID I++FD+ +G +H +
Sbjct: 141 EY--SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 186
>ref|NP_001039847.1| U5 small nuclear ribonucleoprotein 40 kDa protein [Bos taurus].
Length = 358
Score = 54.7 bits (130), Expect = 2e-07
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Frame = +1
Query: 178 DGTVEIYNLSANYFQEKFFPGHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYA 357
DGTV+++++ + F ++ A ++ S G++ +I +DL+ + Y
Sbjct: 174 DGTVKLWDIRKKAAIQTFQNTYQVLAVTFN--DTSDQIISGGIDNDIKVWDLRQNKLTYT 231
Query: 358 VDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQ------FERNFDRQKSRILS 519
+ + ++ S GS LL D +V+++ + P + F+ N + +L
Sbjct: 232 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKNLLR 291
Query: 520 LSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
SW P G+ IAAGS D ++ V+D S ++K+
Sbjct: 292 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKL 324
>ref|NP_001040084.1| transducin beta-like protein 3 [Bos taurus].
Length = 800
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/145 (23%), Positives = 66/145 (45%)
Frame = +1
Query: 70 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 249
+G F HR G+ CV ++ LA + DGT++++ L ++ K F GH++
Sbjct: 514 LGTFSGHR--------RGLWCVQFSPMDQVLATASADGTIKLWALQ-DFSCLKTFEGHDA 564
Query: 250 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGC 429
+ ++G +L S+G +G + + ++ +DA +W + S + L G
Sbjct: 565 SVLKVAFVSRGTQLLSSGSDGLLKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDRALTGA 624
Query: 430 EDGSVKLFQITPDKIQFERNFDRQK 504
D V L++ + Q E R++
Sbjct: 625 SDSRVVLWKDVTEAEQAEEQAKREE 649
>ref|NP_001193505.1| echinoderm microtubule-associated protein-like 5 [Bos taurus].
Length = 1977
Score = 50.8 bits (120), Expect = 3e-06
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 3/191 (1%)
Frame = +1
Query: 238 GHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAF-GGPIWSMAASPSGSQ 414
G S ++C KG+ L + EIIE + V GP+W +A PS
Sbjct: 1658 GQASDCVRSVCRGKGKILVGTR-SAEIIEVGEKNAVCSVLVSGHVDGPVWGLATHPSRDF 1716
Query: 415 LLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKS 594
L EDG+V+L+ I K+ + N ++ + P G +A G +K+
Sbjct: 1717 FLSAAEDGTVRLWDIADRKMLNKVNLGHAAR---TVCYSPEGDMVAIG---------MKN 1764
Query: 595 GSAIHKMLVDRQYMGVSK-RKCIIWGVAFLSDGTVISVDSA-GKVQFWDSATGTLVKNHL 768
G I ++ + G + R+C I + F D ++V S+ V F+D G + N +
Sbjct: 1765 GEFIILLVSSLKIWGKKRDRRCAIHDIRFSPDSRFLAVGSSENSVDFYDLTLGPTL-NRI 1823
Query: 769 IANADVQSIAI 801
D+ S I
Sbjct: 1824 SYCKDIPSFVI 1834
>ref|XP_874777.3| PREDICTED: zinedin isoform 2 [Bos taurus].
Length = 828
Score = 49.7 bits (117), Expect = 6e-06
Identities = 69/317 (21%), Positives = 125/317 (39%), Gaps = 28/317 (8%)
Frame = +1
Query: 121 GIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEK----------FFPGHESRATEALC 270
GIR +A+++ + L + DGT++++NL +K F H
Sbjct: 515 GIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEPIHAFRAHRGPVLSVAM 574
Query: 271 WAKGQRLFSAGLNGEIIEYDLQALNV-----------KYAVDAFGGPIWSMAASPSGSQL 417
+ + +S G + I + + LN+ + ++ G +W +A SP+ +L
Sbjct: 575 GSHSEYCYSGGADARIHSWKIPDLNMDPYDGYDPSVLSHVLEGHGDAVWGLAFSPASQRL 634
Query: 418 LVGCEDGSVKLFQITPDK----IQFERNFDR-QKSRILSLSWHPSGTHIAAGSIDYISVF 582
DGSV+++ + F D + + S P+ + S D + ++
Sbjct: 635 ASCSADGSVRIWDPSNSSPTCLCTFSTASDHGTPTSVAFTSTEPAHIVASFRSGDTV-LY 693
Query: 583 DVKSGSAIHKMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKN 762
D+++GSA L+ G S I V+ S I+ ++F D+ TG LV +
Sbjct: 694 DLEAGSA----LLTLDSRGNSGPTQINQVVSHPSQPLTITAHDDRGIRFLDNRTGKLV-H 748
Query: 763 HLIANADVQSIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVR 942
++A+ D + D F++ + + + E R K H +
Sbjct: 749 SMVAHLDAVTCLAVDPNGVFLMSGSHDCSLRLWSLDNKTCVQEITAHRKK----HEEAIH 804
Query: 943 AVA-HSPTALI-SGGTD 987
AVA H ALI S G D
Sbjct: 805 AVACHPSKALIASAGAD 821
>ref|NP_001193033.1| striatin [Bos taurus].
Length = 780
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/316 (21%), Positives = 131/316 (41%), Gaps = 27/316 (8%)
Frame = +1
Query: 121 GIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKF----------FPGHESRATEALC 270
GIR +A++ L + D T++++NL +K F H+ +
Sbjct: 465 GIRALAFHPTEPVLITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLCVVM 524
Query: 271 WAKGQRLFSAGLNGEIIEYDLQALNV----KYAVDAFGGP-------IWSMAASPSGSQL 417
+ G++ +S G +G I ++ N+ Y GP +W +A S + +L
Sbjct: 525 SSSGEQCYSGGADGLIQSWNTTNPNIDPYDSYDPSVLRGPLLGHTDAVWGLAYSAAHQRL 584
Query: 418 LVGCEDGSVKLF---QITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDV 588
L DG+++L+ ++ P F N + + L +A+ S Y S+F++
Sbjct: 585 LSCSADGTLRLWNTTEVAPALSVFNDNQELGVPASVDLVSSDPSHMVASFSKGYTSIFNM 644
Query: 589 KSGSAIHKMLVDRQYMGVSKRKCIIWGVAFLSDGTV---ISVDSAGKVQFWDSATGTLVK 759
++ I + ++ + C I V +S T+ I+ ++F+D+ TG L+
Sbjct: 645 ETQQRI--LTLESNLDSTANSSCQINRV--ISHPTLPISITAHEDRHIKFYDNNTGKLIH 700
Query: 760 NHLIANADVQSIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDV 939
+ + V S+A+ + G+ + ++ + L S T ++ K F+ HDV
Sbjct: 701 SMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKT--CIQEFTAHRKKFEESIHDV 758
Query: 940 RAVAHSPTALISGGTD 987
A S + S G D
Sbjct: 759 -AFHPSKCYIASAGAD 773
>ref|XP_002691328.1| PREDICTED: striatin, calmodulin binding protein-like [Bos taurus].
Length = 780
Score = 49.3 bits (116), Expect = 8e-06
Identities = 67/316 (21%), Positives = 131/316 (41%), Gaps = 27/316 (8%)
Frame = +1
Query: 121 GIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKF----------FPGHESRATEALC 270
GIR +A++ L + D T++++NL +K F H+ +
Sbjct: 465 GIRALAFHPTEPVLITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLCVVM 524
Query: 271 WAKGQRLFSAGLNGEIIEYDLQALNV----KYAVDAFGGP-------IWSMAASPSGSQL 417
+ G++ +S G +G I ++ N+ Y GP +W +A S + +L
Sbjct: 525 SSSGEQCYSGGADGLIQSWNTTNPNIDPYDSYDPSVLRGPLLGHTDAVWGLAYSAAHQRL 584
Query: 418 LVGCEDGSVKLF---QITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDV 588
L DG+++L+ ++ P F N + + L +A+ S Y S+F++
Sbjct: 585 LSCSADGTLRLWNTTEVAPALSVFNDNQELGVPASVDLVSSDPSHMVASFSKGYTSIFNM 644
Query: 589 KSGSAIHKMLVDRQYMGVSKRKCIIWGVAFLSDGTV---ISVDSAGKVQFWDSATGTLVK 759
++ I + ++ + C I V +S T+ I+ ++F+D+ TG L+
Sbjct: 645 ETQQRI--LTLESNLDSTANSSCQINRV--ISHPTLPISITAHEDRHIKFYDNNTGKLIH 700
Query: 760 NHLIANADVQSIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDV 939
+ + V S+A+ + G+ + ++ + L S T ++ K F+ HDV
Sbjct: 701 SMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKT--CIQEFTAHRKKFEESIHDV 758
Query: 940 RAVAHSPTALISGGTD 987
A S + S G D
Sbjct: 759 -AFHPSKCYIASAGAD 773
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,872,753
Number of extensions: 1464553
Number of successful extensions: 4114
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4065
Number of HSP's successfully gapped: 11
Length of query: 433
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,207,134
Effective search space: 4659939952
Effective search space used: 4659939952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010070
(1299 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546858.2| PREDICTED: similar to Cirhin isoform 2 [Canis f... 763 0.0
Alignment gi|XP_863508.1| PREDICTED: similar to Cirhin isoform 3 [Canis f... 763 0.0
Alignment gi|XP_536215.2| PREDICTED: similar to WD repeat domain 61 isofo... 56 7e-08
Alignment gi|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Can... 55 2e-07
Alignment gi|XP_853762.1| PREDICTED: similar to WD repeat domain 61 [Cani... 52 1e-06
Alignment gi|XP_547184.2| PREDICTED: similar to transducin beta-like 3 [C... 52 2e-06
Alignment gi|XP_547946.2| PREDICTED: similar to echinoderm microtubule as... 51 2e-06
Alignment gi|XP_868412.1| PREDICTED: similar to echinoderm microtubule as... 51 2e-06
Alignment gi|XP_868406.1| PREDICTED: similar to echinoderm microtubule as... 51 2e-06
>ref|XP_546858.2| PREDICTED: similar to Cirhin isoform 2 [Canis familiaris].
Length = 699
Score = 763 bits (1971), Expect(2) = 0.0
Identities = 373/390 (95%), Positives = 382/390 (97%)
Frame = +1
Query: 70 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 249
MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
Sbjct: 1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 60
Query: 250 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGC 429
RATEALCWAKGQRLFSAGLNGEIIEYDLQALN+KY +DAFGGPIWSMA SP GSQLLVGC
Sbjct: 61 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNIKYTMDAFGGPIWSMAVSPHGSQLLVGC 120
Query: 430 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAIH 609
EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGS +
Sbjct: 121 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSTVQ 180
Query: 610 KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQ 789
KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQ
Sbjct: 181 KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQ 240
Query: 790 SIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 969
SIA+SDQEDSFVVGTAEGTVFHFQLVSVTS+SSEKQWVRTKPFQHHTHDVRAVAHSPTAL
Sbjct: 241 SIAVSDQEDSFVVGTAEGTVFHFQLVSVTSNSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 300
Query: 970 ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRL 1149
ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRL+ C+KK+QLLLFQF HHLELWRL
Sbjct: 301 ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLISCSKKRQLLLFQFTHHLELWRL 360
Query: 1150 GSTVATGKHGDTLPLSKNADHLLHLKTKAP 1239
GSTVATGK+GDTLPLSKNADHLLHLKTK P
Sbjct: 361 GSTVATGKNGDTLPLSKNADHLLHLKTKGP 390
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3
Query: 1230 KGPENIICSCISPCGKWVGYST 1295
KGPENIICSCISPCG W+ YST
Sbjct: 388 KGPENIICSCISPCGSWIAYST 409
>ref|XP_863508.1| PREDICTED: similar to Cirhin isoform 3 [Canis familiaris].
Length = 655
Score = 763 bits (1971), Expect(2) = 0.0
Identities = 373/390 (95%), Positives = 382/390 (97%)
Frame = +1
Query: 70 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 249
MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
Sbjct: 1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 60
Query: 250 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGC 429
RATEALCWAKGQRLFSAGLNGEIIEYDLQALN+KY +DAFGGPIWSMA SP GSQLLVGC
Sbjct: 61 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNIKYTMDAFGGPIWSMAVSPHGSQLLVGC 120
Query: 430 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAIH 609
EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGS +
Sbjct: 121 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSTVQ 180
Query: 610 KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQ 789
KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQ
Sbjct: 181 KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQ 240
Query: 790 SIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 969
SIA+SDQEDSFVVGTAEGTVFHFQLVSVTS+SSEKQWVRTKPFQHHTHDVRAVAHSPTAL
Sbjct: 241 SIAVSDQEDSFVVGTAEGTVFHFQLVSVTSNSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 300
Query: 970 ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRL 1149
ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRL+ C+KK+QLLLFQF HHLELWRL
Sbjct: 301 ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLISCSKKRQLLLFQFTHHLELWRL 360
Query: 1150 GSTVATGKHGDTLPLSKNADHLLHLKTKAP 1239
GSTVATGK+GDTLPLSKNADHLLHLKTK P
Sbjct: 361 GSTVATGKNGDTLPLSKNADHLLHLKTKGP 390
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3
Query: 1230 KGPENIICSCISPCGKWVGYST 1295
KGPENIICSCISPCG W+ YST
Sbjct: 388 KGPENIICSCISPCGSWIAYST 409
>ref|XP_536215.2| PREDICTED: similar to WD repeat domain 61 isoform 1 [Canis
familiaris].
Length = 305
Score = 56.2 bits (134), Expect = 7e-08
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Frame = +1
Query: 295 SAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKI 474
S+ L+ I +DL ++DA W++A SP L G G V +F + K
Sbjct: 81 SSSLDAHIRLWDLDNGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140
Query: 475 QFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
++ + D + ILS+++ P G ++A+G+ID I++FD+ +G +H +
Sbjct: 141 EY--SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 186
>ref|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Canis familiaris].
Length = 358
Score = 54.7 bits (130), Expect = 2e-07
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Frame = +1
Query: 178 DGTVEIYNLSANYFQEKFFPGHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYA 357
DGTV+++++ + F ++ A ++ S G++ +I +DL+ + Y
Sbjct: 174 DGTVKLWDIRKKAAIQTFQNTYQVLAVTFN--DTSDQIISGGIDNDIKVWDLRQNKLTYT 231
Query: 358 VDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQ------FERNFDRQKSRILS 519
+ + ++ S GS LL D +V+++ + P + F+ N + +L
Sbjct: 232 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 291
Query: 520 LSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
SW P G+ IAAGS D ++ V+D S ++K+
Sbjct: 292 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKL 324
>ref|XP_853762.1| PREDICTED: similar to WD repeat domain 61 [Canis familiaris].
Length = 221
Score = 52.4 bits (124), Expect = 1e-06
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +1
Query: 295 SAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKI 474
S+ L+ I +DL ++DA W++ SP L G G V +F + K
Sbjct: 48 SSSLDAHIRLWDLDNSKQIKSIDAGPVDAWTLVFSPDPQYLATGTHVGKVNIFGVESGKK 107
Query: 475 QFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
++ + D + ILS+++ P G ++ +G+ID I++FD+ +G +H +
Sbjct: 108 KY--SLDTRGKFILSITYSPDGMYLTSGAIDGAINIFDIATGKLLHTL 153
>ref|XP_547184.2| PREDICTED: similar to transducin beta-like 3 [Canis familiaris].
Length = 801
Score = 51.6 bits (122), Expect = 2e-06
Identities = 34/145 (23%), Positives = 68/145 (46%)
Frame = +1
Query: 70 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 249
+G F HR G+ CV ++ LA + DGT++++ L ++ K F GH++
Sbjct: 511 LGIFSGHR--------RGLWCVQFSPMDQVLATASADGTIKLWALQ-DFSCLKTFEGHDA 561
Query: 250 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGC 429
+ + ++G +L S+G +G + + ++ +DA +W + S + L G
Sbjct: 562 SVLKVVFVSRGTQLLSSGSDGLVKLWTIKNNECVKTLDAHEDKVWGLHCSRLDDRALTGA 621
Query: 430 EDGSVKLFQITPDKIQFERNFDRQK 504
D V L++ ++ Q E R++
Sbjct: 622 SDSCVILWKDVTEEEQSEEQARREE 646
>ref|XP_547946.2| PREDICTED: similar to echinoderm microtubule associated protein like
5 isoform 1 [Canis familiaris].
Length = 1969
Score = 51.2 bits (121), Expect = 2e-06
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 3/191 (1%)
Frame = +1
Query: 238 GHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAF-GGPIWSMAASPSGSQ 414
G + ++C KG+ L N EIIE + V+ GPIW + PS
Sbjct: 1650 GQVTDCVRSVCRGKGKILVGTR-NAEIIEVGEKNAACNILVNGHVDGPIWGLVTHPSRDF 1708
Query: 415 LLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKS 594
L EDG+V+L+ I K+ + N ++ + P G +A G +K+
Sbjct: 1709 FLSAAEDGTVRLWDIADKKMLNKVNLGHAAR---TVCYSPEGDMVAIG---------MKN 1756
Query: 595 GSAIHKMLVDRQYMGVSK-RKCIIWGVAFLSDGTVISVDSA-GKVQFWDSATGTLVKNHL 768
G I ++ + G + R+C I + F D ++V S+ V F+D G + N +
Sbjct: 1757 GEFIILLVSSLKIWGKKRDRRCAIHDIRFSPDSRFLAVGSSENSVDFYDLTLGPTL-NRI 1815
Query: 769 IANADVQSIAI 801
D+ S I
Sbjct: 1816 SYCRDIPSFVI 1826
>ref|XP_868412.1| PREDICTED: similar to echinoderm microtubule associated protein like
5 isoform 3 [Canis familiaris].
Length = 1977
Score = 51.2 bits (121), Expect = 2e-06
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 3/191 (1%)
Frame = +1
Query: 238 GHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAF-GGPIWSMAASPSGSQ 414
G + ++C KG+ L N EIIE + V+ GPIW + PS
Sbjct: 1658 GQVTDCVRSVCRGKGKILVGTR-NAEIIEVGEKNAACNILVNGHVDGPIWGLVTHPSRDF 1716
Query: 415 LLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKS 594
L EDG+V+L+ I K+ + N ++ + P G +A G +K+
Sbjct: 1717 FLSAAEDGTVRLWDIADKKMLNKVNLGHAAR---TVCYSPEGDMVAIG---------MKN 1764
Query: 595 GSAIHKMLVDRQYMGVSK-RKCIIWGVAFLSDGTVISVDSA-GKVQFWDSATGTLVKNHL 768
G I ++ + G + R+C I + F D ++V S+ V F+D G + N +
Sbjct: 1765 GEFIILLVSSLKIWGKKRDRRCAIHDIRFSPDSRFLAVGSSENSVDFYDLTLGPTL-NRI 1823
Query: 769 IANADVQSIAI 801
D+ S I
Sbjct: 1824 SYCRDIPSFVI 1834
>ref|XP_868406.1| PREDICTED: similar to echinoderm microtubule associated protein like
5 isoform 2 [Canis familiaris].
Length = 1962
Score = 51.2 bits (121), Expect = 2e-06
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 3/191 (1%)
Frame = +1
Query: 238 GHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAF-GGPIWSMAASPSGSQ 414
G + ++C KG+ L N EIIE + V+ GPIW + PS
Sbjct: 1643 GQVTDCVRSVCRGKGKILVGTR-NAEIIEVGEKNAACNILVNGHVDGPIWGLVTHPSRDF 1701
Query: 415 LLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKS 594
L EDG+V+L+ I K+ + N ++ + P G +A G +K+
Sbjct: 1702 FLSAAEDGTVRLWDIADKKMLNKVNLGHAAR---TVCYSPEGDMVAIG---------MKN 1749
Query: 595 GSAIHKMLVDRQYMGVSK-RKCIIWGVAFLSDGTVISVDSA-GKVQFWDSATGTLVKNHL 768
G I ++ + G + R+C I + F D ++V S+ V F+D G + N +
Sbjct: 1750 GEFIILLVSSLKIWGKKRDRRCAIHDIRFSPDSRFLAVGSSENSVDFYDLTLGPTL-NRI 1808
Query: 769 IANADVQSIAI 801
D+ S I
Sbjct: 1809 SYCRDIPSFVI 1819
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,065,054
Number of extensions: 1499427
Number of successful extensions: 4382
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4324
Number of HSP's successfully gapped: 11
Length of query: 433
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 327
Effective length of database: 15,340,888
Effective search space: 5016470376
Effective search space used: 5016470376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010070
(1299 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355821.1| PREDICTED: cirhin, partial [Sus scrofa]. 295 4e-89
Alignment gi|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [... 57 2e-08
Alignment gi|XP_003356819.1| PREDICTED: echinoderm microtubule-associated... 57 3e-08
Alignment gi|XP_003356314.1| PREDICTED: u5 small nuclear ribonucleoprotei... 55 1e-07
>ref|XP_003355821.1| PREDICTED: cirhin, partial [Sus scrofa].
Length = 442
Score = 295 bits (755), Expect(2) = 4e-89
Identities = 144/146 (98%), Positives = 144/146 (98%)
Frame = +1
Query: 802 SDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTALISGG 981
S QEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTALISGG
Sbjct: 1 SQQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTALISGG 60
Query: 982 TDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRLGSTV 1161
TDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRLGSTV
Sbjct: 61 TDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRLGSTV 120
Query: 1162 ATGKHGDTLPLSKNADHLLHLKTKAP 1239
ATGKHGDTLPLSKNADHLLHLKTK P
Sbjct: 121 ATGKHGDTLPLSKNADHLLHLKTKGP 146
Score = 52.4 bits (124), Expect(2) = 4e-89
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = +3
Query: 1230 KGPENIICSCISPCGKWVGYSTA 1298
KGPENIICSCISPCG WV YSTA
Sbjct: 144 KGPENIICSCISPCGSWVAYSTA 166
>ref|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [Sus scrofa].
Length = 305
Score = 57.0 bits (136), Expect = 2e-08
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +1
Query: 295 SAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKI 474
S+ L+ I +DL+ ++DA W++A SP L G G V +F + K
Sbjct: 81 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140
Query: 475 QFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
++ + D + ILS+++ P G ++A+G+ID I++FD+ +G +H +
Sbjct: 141 EY--SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 186
>ref|XP_003356819.1| PREDICTED: echinoderm microtubule-associated protein-like 5 [Sus
scrofa].
Length = 1957
Score = 56.6 bits (135), Expect = 3e-08
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 4/215 (1%)
Frame = +1
Query: 169 SRTDGTVEIYNLSANYFQE-KFFPGHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALN 345
S+ G V++++ + K G + ++C KG+ L N EIIE +
Sbjct: 1614 SKEGGAVKLWDQELRRCRAFKLETGQVTDCVRSVCRGKGKILVGTR-NAEIIEVGEKNAA 1672
Query: 346 VKYAVDAF-GGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSL 522
V+A GPIW +AA PS L EDG+V+L+ I K+ + N ++
Sbjct: 1673 CNILVNAHVDGPIWGLAAHPSRDFFLSAAEDGTVRLWDIADKKMLNKVNLGHAAR---TV 1729
Query: 523 SWHPSGTHIAAGSIDYISVFDVKSGSAIHKMLVDRQYMGVSK-RKCIIWGVAFLSDGTVI 699
+ P G +A G +K+G I ++ + G + R+C I + F D +
Sbjct: 1730 CYSPEGDMVAIG---------MKNGEFIILLVSSLKIWGKKRDRRCAIHDIRFSPDSRFL 1780
Query: 700 SVDSA-GKVQFWDSATGTLVKNHLIANADVQSIAI 801
+V S+ V F+D G + N + D+ S I
Sbjct: 1781 AVGSSENSVDFYDLTLGPTL-NRISYCKDIPSFVI 1814
>ref|XP_003356314.1| PREDICTED: u5 small nuclear ribonucleoprotein 40 kDa protein-like
[Sus scrofa].
Length = 358
Score = 54.7 bits (130), Expect = 1e-07
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Frame = +1
Query: 178 DGTVEIYNLSANYFQEKFFPGHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYA 357
DGTV+++++ + F ++ A ++ S G++ +I +DL+ + Y
Sbjct: 174 DGTVKLWDIRKKAAIQTFQNTYQVLAVTFN--DTSDQIISGGIDNDIKVWDLRQNKLTYT 231
Query: 358 VDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQ------FERNFDRQKSRILS 519
+ + ++ S GS LL D +V+++ + P + F+ N + +L
Sbjct: 232 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 291
Query: 520 LSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
SW P G+ IAAGS D ++ V+D S ++K+
Sbjct: 292 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKL 324
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,967,502
Number of extensions: 932295
Number of successful extensions: 2659
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2629
Number of HSP's successfully gapped: 5
Length of query: 433
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 331
Effective length of database: 8,804,438
Effective search space: 2914268978
Effective search space used: 2914268978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010070
(1299 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035704.2| cirhin [Mus musculus]. 729 0.0
Alignment gi|NP_001020546.1| WD repeat-containing protein 61 isoform a [M... 58 2e-08
Alignment gi|NP_075680.1| WD repeat-containing protein 61 isoform a [Mus ... 58 2e-08
Alignment gi|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 55 9e-08
Alignment gi|NP_001020547.1| WD repeat-containing protein 61 isoform b [M... 54 4e-07
Alignment gi|NP_001074660.1| echinoderm microtubule-associated protein-li... 53 6e-07
Alignment gi|NP_035630.2| striatin [Mus musculus]. 50 5e-06
Alignment gi|NP_076086.1| WD repeat-containing protein 31 [Mus musculus]. 49 9e-06
>ref|NP_035704.2| cirhin [Mus musculus].
Length = 686
Score = 729 bits (1881), Expect(2) = 0.0
Identities = 348/390 (89%), Positives = 376/390 (96%)
Frame = +1
Query: 70 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 249
MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
Sbjct: 1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 60
Query: 250 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGC 429
R TEALCWA GQRLFSAGLNGEI+EYDLQALN+KY +DAFGGPIWSM ASPSGSQLLVGC
Sbjct: 61 RGTEALCWAGGQRLFSAGLNGEILEYDLQALNIKYTLDAFGGPIWSMTASPSGSQLLVGC 120
Query: 430 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAIH 609
EDGSVKLF++TP+KIQF RNFDRQKSRILSL WHP+GTH+AAGS+DYISVFDVKSGS I
Sbjct: 121 EDGSVKLFEVTPEKIQFARNFDRQKSRILSLCWHPAGTHVAAGSLDYISVFDVKSGSIIR 180
Query: 610 KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQ 789
KM++DRQ++GV+K +CI+WGVAFLSDGTVISVDS GKVQ WDSATGTLVK+HL+ANADVQ
Sbjct: 181 KMVLDRQHLGVTKSRCIVWGVAFLSDGTVISVDSVGKVQLWDSATGTLVKSHLVANADVQ 240
Query: 790 SIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 969
SIA++DQEDSFVVGTAEGTVFHFQLVS+TS+SSEKQWVRTKPFQHHTHDVRAVAHSPTAL
Sbjct: 241 SIAVADQEDSFVVGTAEGTVFHFQLVSMTSNSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 300
Query: 970 ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRL 1149
ISGGTDTHLVIRPLME+VEVKNYDAALRKITFPHRRL+ C+K++QLLLFQFAHHLELWRL
Sbjct: 301 ISGGTDTHLVIRPLMERVEVKNYDAALRKITFPHRRLISCSKRRQLLLFQFAHHLELWRL 360
Query: 1150 GSTVATGKHGDTLPLSKNADHLLHLKTKAP 1239
GST ATGK+GDTLPLSKNADHLLHLKTK P
Sbjct: 361 GSTSATGKNGDTLPLSKNADHLLHLKTKGP 390
Score = 51.6 bits (122), Expect(2) = 0.0
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +3
Query: 1230 KGPENIICSCISPCGKWVGYSTA 1298
KGPENIICSC+SPCG W+ YSTA
Sbjct: 388 KGPENIICSCVSPCGSWIAYSTA 410
>ref|NP_001020546.1| WD repeat-containing protein 61 isoform a [Mus musculus].
Length = 305
Score = 57.8 bits (138), Expect = 2e-08
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +1
Query: 295 SAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKI 474
S+ L+ I +DL+ ++DA W++A SP L G G V +F + K
Sbjct: 81 SSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVESGKK 140
Query: 475 QFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
++ + D + ILS+++ P G ++A+G+ID I++FD+ +G +H +
Sbjct: 141 EY--SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 186
>ref|NP_075680.1| WD repeat-containing protein 61 isoform a [Mus musculus].
Length = 305
Score = 57.8 bits (138), Expect = 2e-08
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +1
Query: 295 SAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKI 474
S+ L+ I +DL+ ++DA W++A SP L G G V +F + K
Sbjct: 81 SSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVESGKK 140
Query: 475 QFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
++ + D + ILS+++ P G ++A+G+ID I++FD+ +G +H +
Sbjct: 141 EY--SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 186
>ref|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Mus musculus].
Length = 358
Score = 55.5 bits (132), Expect = 9e-08
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Frame = +1
Query: 178 DGTVEIYNLSANYFQEKFFPGHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYA 357
DGTV+++++ + F ++ A ++ S G++ +I +DL+ + Y
Sbjct: 174 DGTVKLWDIRKKAAVQTFQNTYQVLAVTFN--DTSDQIISGGIDNDIKVWDLRQNKLTYT 231
Query: 358 VDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQ------FERNFDRQKSRILS 519
+ + ++ S GS LL D +V+++ + P + F+ N + +L
Sbjct: 232 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 291
Query: 520 LSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
SW P G+ IAAGS D ++ V+D S ++K+
Sbjct: 292 CSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKL 324
>ref|NP_001020547.1| WD repeat-containing protein 61 isoform b [Mus musculus].
Length = 207
Score = 53.5 bits (127), Expect = 4e-07
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +1
Query: 355 AVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHP 534
++DA W++A SP L G G V +F + K ++ + D + ILS+++ P
Sbjct: 3 SIDAGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVESGKKEY--SLDTRGKFILSIAYSP 60
Query: 535 SGTHIAAGSID-YISVFDVKSGSAIHKM 615
G ++A+G+ID I++FD+ +G +H +
Sbjct: 61 DGKYLASGAIDGIINIFDIATGKLLHTL 88
>ref|NP_001074660.1| echinoderm microtubule-associated protein-like 5 [Mus musculus].
Length = 1977
Score = 52.8 bits (125), Expect = 6e-07
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 3/191 (1%)
Frame = +1
Query: 238 GHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAF-GGPIWSMAASPSGSQ 414
G + ++C KG+ L N EIIE + V+ GPIW +A PS
Sbjct: 1658 GQVTDCVRSVCRGKGKILVGTR-NSEIIEVGEKNAACNILVNGHVDGPIWGLATHPSRDF 1716
Query: 415 LLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKS 594
L EDG+V+L+ I K+ + N ++ + P G +A G +K+
Sbjct: 1717 FLSAAEDGTVRLWDIADKKMLNKVNLGHAAR---TVCYSPEGDMVAIG---------MKN 1764
Query: 595 GSAIHKMLVDRQYMGVSK-RKCIIWGVAFLSDGTVISVDSA-GKVQFWDSATGTLVKNHL 768
G I ++ + G + R+C I + F D ++V S+ V F+D G + N +
Sbjct: 1765 GEFIILLVSSLKIWGKKRDRRCAIHDIRFSPDSRYLAVGSSENSVDFYDLTLGPTL-NRI 1823
Query: 769 IANADVQSIAI 801
D+ S I
Sbjct: 1824 SYCKDIPSFVI 1834
>ref|NP_035630.2| striatin [Mus musculus].
Length = 780
Score = 49.7 bits (117), Expect = 5e-06
Identities = 68/316 (21%), Positives = 130/316 (41%), Gaps = 27/316 (8%)
Frame = +1
Query: 121 GIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKF----------FPGHESRATEALC 270
GIR +A++ L + D T++++NL +K F H+ +
Sbjct: 465 GIRALAFHPIEPVLITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLCVVM 524
Query: 271 WAKGQRLFSAGLNGEIIEYDLQALNVK----YAVDAFGGP-------IWSMAASPSGSQL 417
+ G++ +S G +G I + NV Y GP +W +A S + +L
Sbjct: 525 SSNGEQCYSGGTDGRIQSWSTTNPNVDPYDAYDPSVLRGPLLGHTDAVWGLAYSAAHQRL 584
Query: 418 LVGCEDGSVKLF---QITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDV 588
L DG+++L+ ++ P F N + + L +A+ S Y S+F++
Sbjct: 585 LSCSADGTLRLWNTTEVAPALSVFNDNQELGIPASVDLVSSDPSHMVASFSKGYTSIFNM 644
Query: 589 KSGSAIHKMLVDRQYMGVSKRKCIIWGVAFLSDGTV---ISVDSAGKVQFWDSATGTLVK 759
++ + + ++ S C I V +S T+ I+ ++F+D+ TG L+
Sbjct: 645 ETQQRV--LTLESNVDSTSSSSCQINRV--ISHPTLPISITAHEDRHIKFYDNNTGKLIH 700
Query: 760 NHLIANADVQSIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDV 939
+ + V S+A+ + G+ + ++ + L S T ++ K F+ HDV
Sbjct: 701 SMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKT--CIQEFTAHRKKFEESIHDV 758
Query: 940 RAVAHSPTALISGGTD 987
A S + S G D
Sbjct: 759 -AFHPSKCYIASAGAD 773
>ref|NP_076086.1| WD repeat-containing protein 31 [Mus musculus].
Length = 367
Score = 48.9 bits (115), Expect = 9e-06
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Frame = +1
Query: 178 DGTVEIYNLSANYFQEKFFPGHESRATEALCWAKGQRLFSAGLNGEIIEYDLQ-ALNVKY 354
D T YN ++F GHE T+ C K + FSA + ++ +DLQ + + +
Sbjct: 82 DKTAVAYNWKTGRMVKRF-TGHEREITKIACIPKANQFFSASRDKTVLMWDLQGSSHPRQ 140
Query: 355 AVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHP 534
+ + +A SP SQL G D S+ L+ + + + R + + L W P
Sbjct: 141 QLSGHAMVVTGLAVSPDSSQLCTGSRDNSLLLWDVGTGQCVERASVSR--NLVTHLCWVP 198
Query: 535 SGTHIAAGSID 567
S +I S D
Sbjct: 199 SEPYIVQTSED 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,379,660
Number of extensions: 1278592
Number of successful extensions: 3677
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3619
Number of HSP's successfully gapped: 9
Length of query: 433
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 329
Effective length of database: 12,493,815
Effective search space: 4110465135
Effective search space used: 4110465135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010070
(1299 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_116219.2| cirhin [Homo sapiens]. 759 0.0
Alignment gi|NP_079510.1| WD repeat-containing protein 61 [Homo sapiens]. 57 4e-08
Alignment gi|NP_004805.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 55 2e-07
Alignment gi|NP_899243.1| echinoderm microtubule-associated protein-like ... 53 5e-07
Alignment gi|NP_006444.2| transducin beta-like protein 3 [Homo sapiens]. 49 8e-06
>ref|NP_116219.2| cirhin [Homo sapiens].
Length = 686
Score = 759 bits (1960), Expect(2) = 0.0
Identities = 368/390 (94%), Positives = 384/390 (98%)
Frame = +1
Query: 70 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 249
MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
Sbjct: 1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 60
Query: 250 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGC 429
RATEALCWA+GQRLFSAGLNGEI+EYDLQALN+KYA+DAFGGPIWSMAASPSGSQLLVGC
Sbjct: 61 RATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGC 120
Query: 430 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAIH 609
EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSA+H
Sbjct: 121 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVH 180
Query: 610 KMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQ 789
KM+VDRQYMGVSKRKCI+WGVAFLSDGT+ISVDSAGKVQFWDSATGTLVK+HLIANADVQ
Sbjct: 181 KMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQ 240
Query: 790 SIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTAL 969
SIA++DQEDSFVVGTAEGTVFHFQLV VTS+SSEKQWVRTKPFQHHTHDVR VAHSPTAL
Sbjct: 241 SIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTAL 300
Query: 970 ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRL 1149
ISGGTDTHLV RPLMEKVEVKNYDAALRKITFPHR L+ C+KK+QLLLFQFAHHLELWRL
Sbjct: 301 ISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRL 360
Query: 1150 GSTVATGKHGDTLPLSKNADHLLHLKTKAP 1239
GSTVATGK+GDTLPLSKNADHLLHLKTK P
Sbjct: 361 GSTVATGKNGDTLPLSKNADHLLHLKTKGP 390
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3
Query: 1230 KGPENIICSCISPCGKWVGYST 1295
KGPENIICSCISPCG W+ YST
Sbjct: 388 KGPENIICSCISPCGSWIAYST 409
>ref|NP_079510.1| WD repeat-containing protein 61 [Homo sapiens].
Length = 305
Score = 57.0 bits (136), Expect = 4e-08
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +1
Query: 295 SAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKI 474
S+ L+ I +DL+ ++DA W++A SP L G G V +F + K
Sbjct: 81 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 140
Query: 475 QFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
++ + D + ILS+++ P G ++A+G+ID I++FD+ +G +H +
Sbjct: 141 EY--SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 186
>ref|NP_004805.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Homo sapiens].
Length = 357
Score = 54.7 bits (130), Expect = 2e-07
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Frame = +1
Query: 178 DGTVEIYNLSANYFQEKFFPGHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYA 357
DGTV+++++ + F ++ A ++ S G++ +I +DL+ + Y
Sbjct: 173 DGTVKLWDIRKKAAIQTFQNTYQVLAVTFN--DTSDQIISGGIDNDIKVWDLRQNKLTYT 230
Query: 358 VDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQ------FERNFDRQKSRILS 519
+ + ++ S GS LL D +V+++ + P + F+ N + +L
Sbjct: 231 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 290
Query: 520 LSWHPSGTHIAAGSID-YISVFDVKSGSAIHKM 615
SW P G+ IAAGS D ++ V+D S ++K+
Sbjct: 291 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKL 323
>ref|NP_899243.1| echinoderm microtubule-associated protein-like 5 [Homo sapiens].
Length = 1977
Score = 53.1 bits (126), Expect = 5e-07
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 3/191 (1%)
Frame = +1
Query: 238 GHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAF-GGPIWSMAASPSGSQ 414
G + ++C KG+ L N EIIE + V+ GPIW +A PS
Sbjct: 1658 GQATDCVRSVCRGKGKILVGTR-NAEIIEVGEKNAACNILVNGHVDGPIWGLATHPSRDF 1716
Query: 415 LLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKS 594
L EDG+V+L+ I K+ + N ++ + P G +A G +K+
Sbjct: 1717 FLSAAEDGTVRLWDIADKKMLNKVNLGHAAR---TVCYSPEGDMVAIG---------MKN 1764
Query: 595 GSAIHKMLVDRQYMGVSK-RKCIIWGVAFLSDGTVISVDSA-GKVQFWDSATGTLVKNHL 768
G I ++ + G + R+C I + F D ++V S+ V F+D G + N +
Sbjct: 1765 GEFIILLVSSLKIWGKKRDRRCAIHDIRFSPDSRYLAVGSSENSVDFYDLTLGPTL-NRI 1823
Query: 769 IANADVQSIAI 801
D+ S I
Sbjct: 1824 SYCKDIPSFVI 1834
>ref|NP_006444.2| transducin beta-like protein 3 [Homo sapiens].
Length = 808
Score = 49.3 bits (116), Expect = 8e-06
Identities = 35/149 (23%), Positives = 68/149 (45%)
Frame = +1
Query: 70 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 249
+G F HR G+ CV ++ LA + DGT++++ L ++ K F GH++
Sbjct: 514 LGVFSGHR--------RGLWCVQFSPMDQVLATASADGTIKLWALQ-DFSCLKTFEGHDA 564
Query: 250 RATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGC 429
+ ++G +L S+G +G + + ++ +DA +W + S L G
Sbjct: 565 SVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDHALTGA 624
Query: 430 EDGSVKLFQITPDKIQFERNFDRQKSRIL 516
D V L++ + Q E RQ+ +++
Sbjct: 625 SDSRVILWKDVTEAEQAEEQ-ARQEEQVV 652
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,372,618
Number of extensions: 1499595
Number of successful extensions: 4202
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4151
Number of HSP's successfully gapped: 6
Length of query: 433
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,835,944
Effective search space: 4866189632
Effective search space used: 4866189632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010070
(1299 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 343 1e-91
>Sscrofa_Chr06
|| Length = 157765593
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 808 caagaagacagtttcgtggtgggcacggccgaggggacagtgttccattttcagctggtc 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16748582 caagaagacagtttcgtggtgggcacggccgaggggacagtgttccattttcagctggtc 16748523
Query: 868 tctgtgacttccagcagcagtgaaaagcagtgggtgcggacgaagccatttcagcatcac 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16748522 tctgtgacttccagcagcagtgaaaagcagtgggtgcggacgaagccatttcagcatcac 16748463
Query: 928 actcatgatgtgcgagctgtggcccacagccccacagcactgatctctggagg 980
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16748462 actcatgatgtgcgagctgtggcccacagccccacagcactgatctctggagg 16748410
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 1072 cgacgtcttgttttctgtgcaaaaaagaagcagcttctcctcttccagtttgctcatcat 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16746424 cgacgtcttgttttctgtgcaaaaaagaagcagcttctcctcttccagtttgctcatcat 16746365
Query: 1132 ttggaactttggcgactgggatccacagttgcaacagg 1169
||||||||||||||||||||||||||||||||||||||
Sbjct: 16746364 ttggaactttggcgactgggatccacagttgcaacagg 16746327
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 978 aggcaccgacacccacttagtcattcgccctctcatggagaaggtggaagtgaagaatta 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16748036 aggcaccgacacccacttagtcattcgccctctcatggagaaggtggaagtgaagaatta 16747977
Query: 1038 tgatgctgctctccgaaaaatcacttttccccat 1071
||||||||||||||||||||||||||||||||||
Sbjct: 16747976 tgatgctgctctccgaaaaatcacttttccccat 16747943
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 1166 caggaaagcatggggatacccttccactctctaaaaatgcagatcatctacttcacctca 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16745606 caggaaagcatggggatacccttccactctctaaaaatgcagatcatctacttcacctca 16745547
Query: 1226 agacaaagg 1234
|||||||||
Sbjct: 16745546 agacaaagg 16745538
Score = 101 bits (51), Expect = 9e-19
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 1233 ggccccgagaacatcatttgcagctgtatctctccatgtggaaagtgggtgggctattct 1292
||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 16743370 ggccccgagaacatcatttgcagctgtatctctccatgtggaagttgggtagcctattct 16743311
Query: 1293 acagctt 1299
|||||||
Sbjct: 16743310 acagctt 16743304
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,565,987
Number of extensions: 190
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 5
Length of query: 1299
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1278
Effective length of database: 2,808,413,156
Effective search space: 3589152013368
Effective search space used: 3589152013368
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)