Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010093
(988 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180188.1| max dimerization protein 3 [Bos taurus]. 159 5e-39
Alignment gi|XP_002689064.1| PREDICTED: MAX dimerization protein 3 [Bos t... 159 5e-39
Alignment gi|NP_001069724.1| max dimerization protein 4 [Bos taurus]. 66 4e-11
Alignment gi|NP_001069799.1| max-interacting protein 1 [Bos taurus]. 58 1e-08
Alignment gi|NP_001179309.1| max dimerization protein 1 [Bos taurus]. 50 4e-06
Alignment gi|XP_002691488.1| PREDICTED: MAX dimerization protein 1-like [... 50 4e-06
>ref|NP_001180188.1| max dimerization protein 3 [Bos taurus].
Length = 206
Score = 159 bits (401), Expect = 5e-39
Identities = 86/133 (64%), Positives = 87/133 (65%)
Frame = +2
Query: 419 KRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXX 598
KRCLEQLKQQMPLGADC RYTTLSLLRRARMHIQKLEEQEQRAR+LKE
Sbjct: 74 KRCLEQLKQQMPLGADCVRYTTLSLLRRARMHIQKLEEQEQRARQLKEKLRSKQQSLRRQ 133
Query: 599 XXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFGGEAELLRGFSAG 778
GERE QEELEVDVESLVFGGEAELLRGFSAG
Sbjct: 134 LEQLRGLGTVGERERLRADSLDSSGLSSERSDSDQEELEVDVESLVFGGEAELLRGFSAG 193
Query: 779 QEHSYSHGGGVWL 817
QEHSYSH G WL
Sbjct: 194 QEHSYSHSGSAWL 206
Score = 59.7 bits (143), Expect = 4e-09
Identities = 35/69 (50%), Positives = 35/69 (50%)
Frame = +1
Query: 70 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXQDPGALDSGRS 249
MEPVASNIQV HGYASL Q PGALDSGRS
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPVHRRRKRSPQAPGALDSGRS 60
Query: 250 VHNELEKRR 276
VHNELEKRR
Sbjct: 61 VHNELEKRR 69
>ref|XP_002689064.1| PREDICTED: MAX dimerization protein 3 [Bos taurus].
Length = 206
Score = 159 bits (401), Expect = 5e-39
Identities = 86/133 (64%), Positives = 87/133 (65%)
Frame = +2
Query: 419 KRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXX 598
KRCLEQLKQQMPLGADC RYTTLSLLRRARMHIQKLEEQEQRAR+LKE
Sbjct: 74 KRCLEQLKQQMPLGADCVRYTTLSLLRRARMHIQKLEEQEQRARQLKEKLRSKQQSLRRQ 133
Query: 599 XXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFGGEAELLRGFSAG 778
GERE QEELEVDVESLVFGGEAELLRGFSAG
Sbjct: 134 LEQLRGLGTVGERERLRADSLDSSGLSSERSDSDQEELEVDVESLVFGGEAELLRGFSAG 193
Query: 779 QEHSYSHGGGVWL 817
QEHSYSH G WL
Sbjct: 194 QEHSYSHSGSAWL 206
Score = 59.7 bits (143), Expect = 4e-09
Identities = 35/69 (50%), Positives = 35/69 (50%)
Frame = +1
Query: 70 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXQDPGALDSGRS 249
MEPVASNIQV HGYASL Q PGALDSGRS
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPVHRRRKRSPQAPGALDSGRS 60
Query: 250 VHNELEKRR 276
VHNELEKRR
Sbjct: 61 VHNELEKRR 69
>ref|NP_001069724.1| max dimerization protein 4 [Bos taurus].
Length = 209
Score = 66.2 bits (160), Expect = 4e-11
Identities = 47/128 (36%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Frame = +2
Query: 428 LEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXXXXX 607
LEQLKQ +PLG D R+TTLSLL+RA+MHI+KLEEQ++RA +KE
Sbjct: 73 LEQLKQLVPLGPDSTRHTTLSLLKRAKMHIKKLEEQDRRALSIKEQLQREHRFLKRRL-- 130
Query: 608 XXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAELLRGFSAGQE 784
E+ E EVDVE + FG GE + + S +
Sbjct: 131 --------EQLSAQSLERVRTDSTGSAVSTDDSEQEVDVEGMEFGPGELDSVGSGSDVDD 182
Query: 785 HSYSHGGG 808
H GGG
Sbjct: 183 HYSLRGGG 190
>ref|NP_001069799.1| max-interacting protein 1 [Bos taurus].
Length = 291
Score = 57.8 bits (138), Expect = 1e-08
Identities = 53/174 (30%), Positives = 69/174 (39%), Gaps = 6/174 (3%)
Frame = +2
Query: 251 CITSWKSAGESQPCPDSTRPQELPPSGLPSPAVPHLASKSGXXXXXXXXXXXXXXXKR-- 424
C + S S P P R Q P S A H + S +R
Sbjct: 89 CEHGYASTFPSMPSP---RLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAH 145
Query: 425 ---CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXX 595
CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 146 LRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRF 202
Query: 596 XXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 754
GP E E +EE+EVDVES F GE +
Sbjct: 203 LKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVD 255
>ref|NP_001179309.1| max dimerization protein 1 [Bos taurus].
Length = 222
Score = 49.7 bits (117), Expect = 4e-06
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 547
CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 75 CLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRKA 115
>ref|XP_002691488.1| PREDICTED: MAX dimerization protein 1-like [Bos taurus].
Length = 222
Score = 49.7 bits (117), Expect = 4e-06
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 547
CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 75 CLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRKA 115
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,515,084
Number of extensions: 1184112
Number of successful extensions: 7302
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7196
Number of HSP's successfully gapped: 8
Length of query: 329
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,273,310
Effective search space: 3225768060
Effective search space used: 3225768060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010093
(988 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865633.1| PREDICTED: similar to MAX dimerization protein ... 157 2e-38
Alignment gi|XP_546209.2| PREDICTED: similar to MAX dimerization protein ... 157 2e-38
Alignment gi|XP_545921.2| PREDICTED: similar to Max dimerization protein ... 65 1e-10
Alignment gi|XP_852395.1| PREDICTED: similar to MAX interactor 1 isoform ... 56 5e-08
Alignment gi|XP_855458.1| PREDICTED: similar to MAX dimerization protein ... 51 2e-06
>ref|XP_865633.1| PREDICTED: similar to MAX dimerization protein 3 isoform 2 [Canis
familiaris].
Length = 196
Score = 157 bits (396), Expect = 2e-38
Identities = 85/133 (63%), Positives = 88/133 (66%)
Frame = +2
Query: 419 KRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXX 598
KRCLEQLKQQMPLGADCAR TTLSLLR AR+HIQKLEEQEQ+ARRLKE
Sbjct: 64 KRCLEQLKQQMPLGADCARSTTLSLLRWARVHIQKLEEQEQQARRLKEKLRSKQQSLQRQ 123
Query: 599 XXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFGGEAELLRGFSAG 778
AGPGERE QEE+EVDVESLVFGGEAELLRGFSAG
Sbjct: 124 LEWLRGLAGPGERERPRADSLDSSGLSSERSDSDQEEVEVDVESLVFGGEAELLRGFSAG 183
Query: 779 QEHSYSHGGGVWL 817
QEHSYSH WL
Sbjct: 184 QEHSYSHSSSTWL 196
>ref|XP_546209.2| PREDICTED: similar to MAX dimerization protein 3 isoform 1 [Canis
familiaris].
Length = 206
Score = 157 bits (396), Expect = 2e-38
Identities = 85/133 (63%), Positives = 88/133 (66%)
Frame = +2
Query: 419 KRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXX 598
KRCLEQLKQQMPLGADCAR TTLSLLR AR+HIQKLEEQEQ+ARRLKE
Sbjct: 74 KRCLEQLKQQMPLGADCARSTTLSLLRWARVHIQKLEEQEQQARRLKEKLRSKQQSLQRQ 133
Query: 599 XXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFGGEAELLRGFSAG 778
AGPGERE QEE+EVDVESLVFGGEAELLRGFSAG
Sbjct: 134 LEWLRGLAGPGERERPRADSLDSSGLSSERSDSDQEEVEVDVESLVFGGEAELLRGFSAG 193
Query: 779 QEHSYSHGGGVWL 817
QEHSYSH WL
Sbjct: 194 QEHSYSHSSSTWL 206
Score = 58.5 bits (140), Expect = 9e-09
Identities = 34/69 (49%), Positives = 35/69 (50%)
Frame = +1
Query: 70 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXQDPGALDSGRS 249
MEPVASNIQV HGYASL+ Q GALDSGRS
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLYPHRSPGPVYRRRKRSPQASGALDSGRS 60
Query: 250 VHNELEKRR 276
VHNELEKRR
Sbjct: 61 VHNELEKRR 69
>ref|XP_545921.2| PREDICTED: similar to Max dimerization protein 4 isoform 1 [Canis
familiaris].
Length = 209
Score = 65.1 bits (157), Expect = 1e-10
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = +2
Query: 428 LEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKE 562
LEQLKQ +PLG D R+TTLSLL+RA+MHI+KLEEQ++RA +KE
Sbjct: 73 LEQLKQLVPLGPDSTRHTTLSLLKRAKMHIKKLEEQDRRALSIKE 117
>ref|XP_852395.1| PREDICTED: similar to MAX interactor 1 isoform b [Canis
familiaris].
Length = 291
Score = 56.2 bits (134), Expect = 5e-08
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKE 562
CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 149 CLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE 194
>ref|XP_855458.1| PREDICTED: similar to MAX dimerization protein 1 [Canis
familiaris].
Length = 377
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/41 (56%), Positives = 34/41 (82%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 547
CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 75 CLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 115
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,086,497
Number of extensions: 1222645
Number of successful extensions: 7921
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7751
Number of HSP's successfully gapped: 6
Length of query: 329
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 226
Effective length of database: 15,440,896
Effective search space: 3489642496
Effective search space used: 3489642496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010093
(988 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123727.1| PREDICTED: max dimerization protein 3-like [... 176 2e-44
Alignment gi|XP_003133229.2| PREDICTED: hypothetical protein LOC100154269... 57 1e-08
Alignment gi|XP_001925312.2| PREDICTED: hypothetical protein LOC100154269... 57 1e-08
Alignment gi|XP_003125113.2| PREDICTED: max dimerization protein 1-like [... 53 3e-07
Alignment gi|XP_003354831.1| PREDICTED: max dimerization protein 1-like i... 51 1e-06
Alignment gi|XP_003354830.1| PREDICTED: max dimerization protein 1-like i... 51 1e-06
>ref|XP_003123727.1| PREDICTED: max dimerization protein 3-like [Sus scrofa].
Length = 206
Score = 176 bits (446), Expect = 2e-44
Identities = 94/133 (70%), Positives = 94/133 (70%)
Frame = +2
Query: 419 KRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXX 598
KRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKE
Sbjct: 74 KRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEKLRSKQQSLRQQ 133
Query: 599 XXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFGGEAELLRGFSAG 778
AGPGERE QEELEVDVESLVFGGEAELLRGFSAG
Sbjct: 134 LEQLRGLAGPGERERLRADSLDSSGLSSERSDSDQEELEVDVESLVFGGEAELLRGFSAG 193
Query: 779 QEHSYSHGGGVWL 817
QEHSYSHGGGVWL
Sbjct: 194 QEHSYSHGGGVWL 206
Score = 65.9 bits (159), Expect = 3e-11
Identities = 37/69 (53%), Positives = 37/69 (53%)
Frame = +1
Query: 70 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXQDPGALDSGRS 249
MEPVASNIQV HGYASLF QDPGALDSGRS
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLFPHRSPGPVHRRRRRSPQDPGALDSGRS 60
Query: 250 VHNELEKRR 276
VHNELEKRR
Sbjct: 61 VHNELEKRR 69
>ref|XP_003133229.2| PREDICTED: hypothetical protein LOC100154269 isoform 2 [Sus
scrofa].
Length = 182
Score = 57.4 bits (137), Expect = 1e-08
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXXXX 604
CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 40 CLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRFLKR 96
Query: 605 XXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 754
GP E E +EE+EVDVES F GE +
Sbjct: 97 RLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVD 146
>ref|XP_001925312.2| PREDICTED: hypothetical protein LOC100154269 isoform 1 [Sus
scrofa].
Length = 281
Score = 57.4 bits (137), Expect = 1e-08
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXXXX 604
CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 139 CLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRFLKR 195
Query: 605 XXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 754
GP E E +EE+EVDVES F GE +
Sbjct: 196 RLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVD 245
>ref|XP_003125113.2| PREDICTED: max dimerization protein 1-like [Sus scrofa].
Length = 200
Score = 52.8 bits (125), Expect = 3e-07
Identities = 33/85 (38%), Positives = 49/85 (57%)
Frame = +2
Query: 293 PDSTRPQELPPSGLPSPAVPHLASKSGXXXXXXXXXXXXXXXKRCLEQLKQQMPLGADCA 472
P+S+R + PS LP+P A S + CLE+LK +PLG +
Sbjct: 17 PESSRTR---PSPLPAPD----AGLSTTPSESYSLSLGRAHLRLCLEKLKGLVPLGPESN 69
Query: 473 RYTTLSLLRRARMHIQKLEEQEQRA 547
R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 70 RHTTLSLLTKAKLHIKKLEDCDRRA 94
>ref|XP_003354831.1| PREDICTED: max dimerization protein 1-like isoform 2 [Sus scrofa].
Length = 211
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/41 (56%), Positives = 34/41 (82%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 547
CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 65 CLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 105
>ref|XP_003354830.1| PREDICTED: max dimerization protein 1-like isoform 1 [Sus scrofa].
Length = 221
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/41 (56%), Positives = 34/41 (82%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 547
CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 75 CLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 115
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,341,913
Number of extensions: 773050
Number of successful extensions: 4955
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4897
Number of HSP's successfully gapped: 7
Length of query: 329
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,879,129
Effective search space: 2042199670
Effective search space used: 2042199670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010093
(988 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057871.2| max dimerization protein 3 [Mus musculus]. 139 3e-33
Alignment gi|NP_034883.2| max dimerization protein 4 [Mus musculus]. 65 8e-11
Alignment gi|NP_034977.1| max-interacting protein 1 isoform a [Mus muscul... 60 3e-09
Alignment gi|NP_001008542.2| max-interacting protein 1 isoform b [Mus mus... 60 3e-09
Alignment gi|NP_001008543.1| max-interacting protein 1 isoform c [Mus mus... 59 6e-09
Alignment gi|NP_034881.2| max dimerization protein 1 [Mus musculus]. 51 2e-06
>ref|NP_057871.2| max dimerization protein 3 [Mus musculus].
Length = 206
Score = 139 bits (350), Expect = 3e-33
Identities = 76/133 (57%), Positives = 82/133 (61%)
Frame = +2
Query: 419 KRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXX 598
KRCLEQL+QQMPLG DC RYTTLSLLRRAR+HIQKLEEQEQ+ARRLKE
Sbjct: 74 KRCLEQLRQQMPLGVDCTRYTTLSLLRRARVHIQKLEEQEQQARRLKEKLRSKQQSLQQQ 133
Query: 599 XXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFGGEAELLRGFSAG 778
G ERE QE+LEVDVESLVFG E ELL+ FSAG
Sbjct: 134 LEQLQGLPGARERERLRADSLDSSGLSSERSDSDQEDLEVDVESLVFGTETELLQSFSAG 193
Query: 779 QEHSYSHGGGVWL 817
+EHSYSH WL
Sbjct: 194 REHSYSHSTCAWL 206
Score = 57.8 bits (138), Expect = 1e-08
Identities = 34/69 (49%), Positives = 35/69 (50%)
Frame = +1
Query: 70 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXQDPGALDSGRS 249
MEPVASNIQV HGYASL Q PGAL+SGRS
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHHSPGTVCRRRKPPLQAPGALNSGRS 60
Query: 250 VHNELEKRR 276
VHNELEKRR
Sbjct: 61 VHNELEKRR 69
>ref|NP_034883.2| max dimerization protein 4 [Mus musculus].
Length = 209
Score = 65.1 bits (157), Expect = 8e-11
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = +2
Query: 428 LEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKE 562
LEQLKQ +PLG D R+TTLSLL+RA+MHI+KLEEQ++RA +KE
Sbjct: 73 LEQLKQLVPLGPDSTRHTTLSLLKRAKMHIKKLEEQDRRALSIKE 117
>ref|NP_034977.1| max-interacting protein 1 isoform a [Mus musculus].
Length = 228
Score = 59.7 bits (143), Expect = 3e-09
Identities = 54/174 (31%), Positives = 71/174 (40%), Gaps = 6/174 (3%)
Frame = +2
Query: 251 CITSWKSAGESQPCPDSTRPQELPPSGLPSPAVPHLASKSGXXXXXXXXXXXXXXXKR-- 424
C + S+ S P P R Q P S A H + S +R
Sbjct: 26 CEHGYASSFPSMPSP---RLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAH 82
Query: 425 ---CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXX 595
CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 83 LRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRF 139
Query: 596 XXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 754
GP E E +EE+EVDVES F GEA+
Sbjct: 140 LKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEAD 192
>ref|NP_001008542.2| max-interacting protein 1 isoform b [Mus musculus].
Length = 295
Score = 59.7 bits (143), Expect = 3e-09
Identities = 54/174 (31%), Positives = 71/174 (40%), Gaps = 6/174 (3%)
Frame = +2
Query: 251 CITSWKSAGESQPCPDSTRPQELPPSGLPSPAVPHLASKSGXXXXXXXXXXXXXXXKR-- 424
C + S+ S P P R Q P S A H + S +R
Sbjct: 93 CEHGYASSFPSMPSP---RLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAH 149
Query: 425 ---CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXX 595
CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 150 LRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRF 206
Query: 596 XXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 754
GP E E +EE+EVDVES F GEA+
Sbjct: 207 LKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEAD 259
>ref|NP_001008543.1| max-interacting protein 1 isoform c [Mus musculus].
Length = 192
Score = 58.9 bits (141), Expect = 6e-09
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXXXX 604
CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 50 CLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRFLKR 106
Query: 605 XXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 754
GP E E +EE+EVDVES F GEA+
Sbjct: 107 RLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEAD 156
>ref|NP_034881.2| max dimerization protein 1 [Mus musculus].
Length = 227
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/41 (53%), Positives = 35/41 (85%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 547
CLE+LK +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 74 CLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 114
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,833,884
Number of extensions: 957124
Number of successful extensions: 5426
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5340
Number of HSP's successfully gapped: 7
Length of query: 329
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 227
Effective length of database: 12,553,887
Effective search space: 2849732349
Effective search space used: 2849732349
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010093
(988 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112590.1| max dimerization protein 3 isoform a [Homo sapi... 162 3e-40
Alignment gi|NP_001136407.1| max dimerization protein 3 isoform b [Homo s... 96 5e-20
Alignment gi|NP_006445.1| max dimerization protein 4 [Homo sapiens]. 64 3e-10
Alignment gi|NP_005953.4| max-interacting protein 1 isoform a [Homo sapie... 58 1e-08
Alignment gi|NP_569157.2| max-interacting protein 1 isoform b [Homo sapie... 58 1e-08
Alignment gi|NP_001008541.1| max-interacting protein 1 isoform c [Homo sa... 57 2e-08
Alignment gi|NP_001189443.1| max dimerization protein 1 isoform 3 [Homo s... 51 2e-06
Alignment gi|NP_001189442.1| max dimerization protein 1 isoform 2 [Homo s... 51 2e-06
Alignment gi|NP_002348.1| max dimerization protein 1 isoform 1 [Homo sapi... 51 2e-06
>ref|NP_112590.1| max dimerization protein 3 isoform a [Homo sapiens].
Length = 206
Score = 162 bits (411), Expect = 3e-40
Identities = 87/133 (65%), Positives = 90/133 (67%)
Frame = +2
Query: 419 KRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXX 598
KRCLE+LKQQMPLGADCARYTTLSLLRRARMHIQKLE+QEQRAR+LKE
Sbjct: 74 KRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLKERLRSKQQSLQRQ 133
Query: 599 XXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFGGEAELLRGFSAG 778
AG ERE QEELEVDVESLVFGGEAELLRGF AG
Sbjct: 134 LEQLRGLAGAAERERLRADSLDSSGLSSERSDSDQEELEVDVESLVFGGEAELLRGFVAG 193
Query: 779 QEHSYSHGGGVWL 817
QEHSYSHGGG WL
Sbjct: 194 QEHSYSHGGGAWL 206
Score = 56.2 bits (134), Expect = 4e-08
Identities = 33/69 (47%), Positives = 34/69 (49%)
Frame = +1
Query: 70 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXQDPGALDSGRS 249
MEP+ASNIQV HGYASL Q PGA DSGRS
Sbjct: 1 MEPLASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRS 60
Query: 250 VHNELEKRR 276
VHNELEKRR
Sbjct: 61 VHNELEKRR 69
>ref|NP_001136407.1| max dimerization protein 3 isoform b [Homo sapiens].
Length = 193
Score = 95.9 bits (237), Expect = 5e-20
Identities = 50/74 (67%), Positives = 53/74 (71%)
Frame = +2
Query: 419 KRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXX 598
KRCLE+LKQQMPLGADCARYTTLSLLRRARMHIQKLE+QEQRAR+LKE
Sbjct: 74 KRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLKERLRSKQQSLQRQ 133
Query: 599 XXXXXXXAGPGERE 640
AG ERE
Sbjct: 134 LEQLRGLAGAAERE 147
Score = 56.2 bits (134), Expect = 4e-08
Identities = 33/69 (47%), Positives = 34/69 (49%)
Frame = +1
Query: 70 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXQDPGALDSGRS 249
MEP+ASNIQV HGYASL Q PGA DSGRS
Sbjct: 1 MEPLASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRS 60
Query: 250 VHNELEKRR 276
VHNELEKRR
Sbjct: 61 VHNELEKRR 69
>ref|NP_006445.1| max dimerization protein 4 [Homo sapiens].
Length = 209
Score = 63.5 bits (153), Expect = 3e-10
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +2
Query: 428 LEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKE 562
LEQLKQ +PLG D R+TTLSLL+RA++HI+KLEEQ++RA +KE
Sbjct: 73 LEQLKQLVPLGPDSTRHTTLSLLKRAKVHIKKLEEQDRRALSIKE 117
>ref|NP_005953.4| max-interacting protein 1 isoform a [Homo sapiens].
Length = 228
Score = 58.2 bits (139), Expect = 1e-08
Identities = 53/174 (30%), Positives = 70/174 (40%), Gaps = 6/174 (3%)
Frame = +2
Query: 251 CITSWKSAGESQPCPDSTRPQELPPSGLPSPAVPHLASKSGXXXXXXXXXXXXXXXKR-- 424
C + S+ S P P R Q P S A H + S +R
Sbjct: 26 CEHGYASSFPSMPSP---RLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAH 82
Query: 425 ---CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXX 595
CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 83 LRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRF 139
Query: 596 XXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 754
GP E E +EE+EVDVES F GE +
Sbjct: 140 LKWRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVD 192
>ref|NP_569157.2| max-interacting protein 1 isoform b [Homo sapiens].
Length = 295
Score = 58.2 bits (139), Expect = 1e-08
Identities = 53/174 (30%), Positives = 70/174 (40%), Gaps = 6/174 (3%)
Frame = +2
Query: 251 CITSWKSAGESQPCPDSTRPQELPPSGLPSPAVPHLASKSGXXXXXXXXXXXXXXXKR-- 424
C + S+ S P P R Q P S A H + S +R
Sbjct: 93 CEHGYASSFPSMPSP---RLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAH 149
Query: 425 ---CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXX 595
CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 150 LRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRF 206
Query: 596 XXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 754
GP E E +EE+EVDVES F GE +
Sbjct: 207 LKWRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVD 259
>ref|NP_001008541.1| max-interacting protein 1 isoform c [Homo sapiens].
Length = 182
Score = 57.4 bits (137), Expect = 2e-08
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXXXX 604
CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 40 CLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRFLKW 96
Query: 605 XXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 754
GP E E +EE+EVDVES F GE +
Sbjct: 97 RLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVD 146
>ref|NP_001189443.1| max dimerization protein 1 isoform 3 [Homo sapiens].
Length = 211
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/41 (53%), Positives = 35/41 (85%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 547
CLE+LK +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 65 CLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 105
>ref|NP_001189442.1| max dimerization protein 1 isoform 2 [Homo sapiens].
Length = 220
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/41 (53%), Positives = 35/41 (85%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 547
CLE+LK +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 75 CLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 115
>ref|NP_002348.1| max dimerization protein 1 isoform 1 [Homo sapiens].
Length = 221
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/41 (53%), Positives = 35/41 (85%)
Frame = +2
Query: 425 CLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 547
CLE+LK +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 75 CLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 115
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,100,574
Number of extensions: 1177173
Number of successful extensions: 7133
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 7044
Number of HSP's successfully gapped: 11
Length of query: 329
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,901,872
Effective search space: 3367823072
Effective search space used: 3367823072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010093
(988 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 547 e-153
>Sscrofa_Chr02
|| Length = 162569375
Score = 547 bits (276), Expect = e-153
Identities = 276/276 (100%)
Strand = Plus / Minus
Query: 245 ggtctgtgcataacgagttggaaaagcgcaggtgagtcccaaccctgccctgacagcacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82230343 ggtctgtgcataacgagttggaaaagcgcaggtgagtcccaaccctgccctgacagcacc 82230284
Query: 305 aggccccaggaactgcctccctctggccttccctcccctgctgtccctcatctggccagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82230283 aggccccaggaactgcctccctctggccttccctcccctgctgtccctcatctggccagc 82230224
Query: 365 aagtctgggctggcactgccctctagaccccttccccgcaggagggcccagctgaagcgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82230223 aagtctgggctggcactgccctctagaccccttccccgcaggagggcccagctgaagcgg 82230164
Query: 425 tgcctggagcagctgaagcagcagatgcccctgggggctgactgtgcccgatacaccaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82230163 tgcctggagcagctgaagcagcagatgcccctgggggctgactgtgcccgatacaccaca 82230104
Query: 485 ctgagccttctgcgcagggccaggatgcacatccag 520
||||||||||||||||||||||||||||||||||||
Sbjct: 82230103 ctgagccttctgcgcagggccaggatgcacatccag 82230068
Score = 521 bits (263), Expect = e-145
Identities = 281/286 (98%), Gaps = 1/286 (0%)
Strand = Plus / Minus
Query: 703 agaggagctggaggtggatgtggagagcctggtgttcgggggcgaggctgagctgctacg 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227986 agaggagctggaggtggatgtggagagcctggtgttcgggggcgaggctgagctgctacg 82227927
Query: 763 gggcttcagcgccggccaggagcacagctattcacacggtggtggcgtctggctatgacc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227926 gggcttcagcgccggccaggagcacagctattcacacggtggtggcgtctggctatgacc 82227867
Query: 823 ttcgttgccggaggggcctctatgctcagaccacccttggctctgcccaactggagtcct 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227866 ttcgttgccggaggggcctctatgctcagaccacccttggctctgcccaactggagtcct 82227807
Query: 883 cgccgagccttcagggctgctgagagtcgcctcccggttggaatggactaaatggnactt 942
|||||||||| ||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct: 82227806 cgccgagcctccagggctgctgagagtcgcct-cctgttggaatggactaaatggacctt 82227748
Query: 943 gtgtggaaacaggtgctccccctaccctgctgctggctgccggcag 988
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227747 gtgtggaaacaggtgctccccctaccctgctgctggctgccggcag 82227702
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 518 cagaaactggaggagcaggagcagcgggcccggcggctcaaggagaagcttcgaagtaag 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82228246 cagaaactggaggagcaggagcagcgggcccggcggctcaaggagaagcttcgaagtaag 82228187
Query: 578 cagcagagcctgcggcagcagctggagcagctcagggggcttgcggggcctggtgagcgt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82228186 cagcagagcctgcggcagcagctggagcagctcagggggcttgcggggcctggtgagcgt 82228127
Query: 638 gagcggctgcgggcagacagcctggactcctcaggcctctcctccgagcgttctgactca 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82228126 gagcggctgcgggcagacagcctggactcctcaggcctctcctccgagcgttctgactca 82228067
Query: 698 gaccaag 704
|||||||
Sbjct: 82228066 gaccaag 82228060
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 1 gtaacaaaagtggtgcagccgctcctccggccagcaccgtaggccagcccgccgccagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82231519 gtaacaaaagtggtgcagccgctcctccggccagcaccgtaggccagcccgccgccagct 82231460
Query: 61 gtcgcggacatggaacccgtggccagcaatatccaagttctgctgcaggcggccgagttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82231459 gtcgcggacatggaacccgtggccagcaatatccaagttctgctgcaggcggccgagttc 82231400
Query: 121 ctggagcgccgcgagagag 139
|||||||||||||||||||
Sbjct: 82231399 ctggagcgccgcgagagag 82231381
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 138 agaggcggagcatggctatgcgtccctgtttccgcaccgaagtcctggcccggtccacag 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82231117 agaggcggagcatggctatgcgtccctgtttccgcaccgaagtcctggcccggtccacag 82231058
Query: 198 gaggaggcggcggtccccccaagatcctggcgcgctggacagtgggcggt 247
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82231057 gaggaggcggcggtccccccaagatcctggcgcgctggacagtgggcggt 82231008
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,063,490
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 5
Length of query: 988
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 967
Effective length of database: 2,808,413,156
Effective search space: 2715735521852
Effective search space used: 2715735521852
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)