Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010098
(919 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193059.1| methionine-R-sulfoxide reductase B2, mitocho... 313 2e-85
Alignment gi|XP_002692136.1| PREDICTED: methionine sulfoxide reductase B2... 313 2e-85
Alignment gi|XP_002687590.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_002687589.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_002687588.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_002687587.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_001250169.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_001250113.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_875267.2| PREDICTED: methionine sulfoxide reductase B3 is... 142 5e-34
Alignment gi|XP_001250066.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
>ref|NP_001193059.1| methionine-R-sulfoxide reductase B2, mitochondrial [Bos taurus].
Length = 182
Score = 313 bits (801), Expect = 2e-85
Identities = 150/182 (82%), Positives = 155/182 (85%)
Frame = +2
Query: 17 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 196
MAR RA GL RE AV GRAD GG G+ AG L KR+P LSKSEWQKKLTP
Sbjct: 1 MARLLRALRGLTLREAPGWAVRGRADCGGFRAGAGSPQAGCLIKRQPALSKSEWQKKLTP 60
Query: 197 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 376
EQFHVTREKGTEPPFSG YLNNKE GMYHCVCCDSPLFSSEKK+CSGTGWPSFSEAHGTS
Sbjct: 61 EQFHVTREKGTEPPFSGIYLNNKEPGMYHCVCCDSPLFSSEKKFCSGTGWPSFSEAHGTS 120
Query: 377 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 556
GSDES+TGILRR DTSLG ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVAL+FKPR
Sbjct: 121 GSDESNTGILRRADTSLGPARTEVVCKQCEAHLGHVFPDGPGPAGQRFCINSVALRFKPR 180
Query: 557 KH 562
KH
Sbjct: 181 KH 182
>ref|XP_002692136.1| PREDICTED: methionine sulfoxide reductase B2-like [Bos taurus].
Length = 182
Score = 313 bits (801), Expect = 2e-85
Identities = 150/182 (82%), Positives = 155/182 (85%)
Frame = +2
Query: 17 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 196
MAR RA GL RE AV GRAD GG G+ AG L KR+P LSKSEWQKKLTP
Sbjct: 1 MARLLRALRGLTLREAPGWAVRGRADCGGFRAGAGSPQAGCLIKRQPALSKSEWQKKLTP 60
Query: 197 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 376
EQFHVTREKGTEPPFSG YLNNKE GMYHCVCCDSPLFSSEKK+CSGTGWPSFSEAHGTS
Sbjct: 61 EQFHVTREKGTEPPFSGIYLNNKEPGMYHCVCCDSPLFSSEKKFCSGTGWPSFSEAHGTS 120
Query: 377 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 556
GSDES+TGILRR DTSLG ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVAL+FKPR
Sbjct: 121 GSDESNTGILRRADTSLGPARTEVVCKQCEAHLGHVFPDGPGPAGQRFCINSVALRFKPR 180
Query: 557 KH 562
KH
Sbjct: 181 KH 182
>ref|XP_002687590.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 4 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 524 INSVALKFKP 553
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_002687589.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 3 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 524 INSVALKFKP 553
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_002687588.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 2 [Bos
taurus].
Length = 191
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 46 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 106 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 158
Query: 524 INSVALKFKP 553
INS +L F P
Sbjct: 159 INSASLSFSP 168
>ref|XP_002687587.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 1 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 524 INSVALKFKP 553
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_001250169.1| PREDICTED: methionine sulfoxide reductase B3 isoform 3 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 524 INSVALKFKP 553
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_001250113.1| PREDICTED: methionine sulfoxide reductase B3 isoform 2 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 524 INSVALKFKP 553
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_875267.2| PREDICTED: methionine sulfoxide reductase B3 isoform 4 [Bos
taurus].
Length = 191
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 46 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 106 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 158
Query: 524 INSVALKFKP 553
INS +L F P
Sbjct: 159 INSASLSFSP 168
>ref|XP_001250066.1| PREDICTED: methionine sulfoxide reductase B3 isoform 1 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 524 INSVALKFKP 553
INS +L F P
Sbjct: 152 INSASLSFSP 161
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,451,840
Number of extensions: 998159
Number of successful extensions: 3205
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3194
Number of HSP's successfully gapped: 11
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010098
(919 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850458.1| PREDICTED: similar to Methionine-R-sulfoxide re... 282 4e-76
Alignment gi|XP_850508.1| PREDICTED: similar to methionine-R-sulfoxide re... 141 1e-33
Alignment gi|NP_001108221.1| selenoprotein X, 1 [Canis lupus familiaris]. 60 4e-09
>ref|XP_850458.1| PREDICTED: similar to Methionine-R-sulfoxide reductase B [Canis
familiaris].
Length = 176
Score = 282 bits (721), Expect = 4e-76
Identities = 130/142 (91%), Positives = 135/142 (95%)
Frame = +2
Query: 137 SLTKREPFLSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSS 316
SLTK E L+KSEWQKKLTPEQF+VTREKGTEPPFSG YLNNKE+GMYHCVCCDSPLFSS
Sbjct: 35 SLTKHELPLTKSEWQKKLTPEQFYVTREKGTEPPFSGVYLNNKESGMYHCVCCDSPLFSS 94
Query: 317 EKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDG 496
EKKYCSGTGWP+FSEAHGTSGSDE DTGILRRVDTSLG RTEVVCKQCEAHLGHVFPDG
Sbjct: 95 EKKYCSGTGWPAFSEAHGTSGSDERDTGILRRVDTSLGLTRTEVVCKQCEAHLGHVFPDG 154
Query: 497 PGPTGQRFCINSVALKFKPRKH 562
PGP+GQRFCINSVALKFKPRKH
Sbjct: 155 PGPSGQRFCINSVALKFKPRKH 176
>ref|XP_850508.1| PREDICTED: similar to methionine-R-sulfoxide reductase B3 [Canis
familiaris].
Length = 530
Score = 141 bits (355), Expect = 1e-33
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 386 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFRSESKFDSGSG 445
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 446 WPSF---HDVISSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 498
Query: 524 INSVALKFKP 553
INS +L F P
Sbjct: 499 INSASLAFTP 508
>ref|NP_001108221.1| selenoprotein X, 1 [Canis lupus familiaris].
Length = 116
Score = 59.7 bits (143), Expect = 4e-09
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +2
Query: 251 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 427
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGHELFSSRSKYAHSSPWPAFTETIHADS--------VAKRPERNS 63
Query: 428 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPR 556
A +V C +C LGH F DGP P RF I S +LKF P+
Sbjct: 64 PEA-LKVSCGKCGNGLGHEFLNDGPKPGKSRFUIFSSSLKFIPK 106
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,865,882
Number of extensions: 1018437
Number of successful extensions: 3038
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3036
Number of HSP's successfully gapped: 3
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010098
(919 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130825.1| PREDICTED: methionine-R-sulfoxide reductase ... 389 e-108
Alignment gi|XP_003357809.1| PREDICTED: methionine-R-sulfoxide reductase ... 306 8e-84
Alignment gi|XP_003355557.1| PREDICTED: methionine-R-sulfoxide reductase ... 73 2e-13
Alignment gi|NP_001090929.1| methionine-R-sulfoxide reductase B1 [Sus scr... 57 2e-08
>ref|XP_003130825.1| PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like
[Sus scrofa].
Length = 182
Score = 389 bits (998), Expect = e-108
Identities = 182/182 (100%), Positives = 182/182 (100%)
Frame = +2
Query: 17 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 196
MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP
Sbjct: 1 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 60
Query: 197 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 376
EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS
Sbjct: 61 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 120
Query: 377 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 556
GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR
Sbjct: 121 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 180
Query: 557 KH 562
KH
Sbjct: 181 KH 182
>ref|XP_003357809.1| PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like
[Sus scrofa].
Length = 253
Score = 306 bits (785), Expect = 8e-84
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +2
Query: 137 SLTKREPFLSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSS 316
SLTKREPFLSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSS
Sbjct: 112 SLTKREPFLSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSS 171
Query: 317 EKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDG 496
EKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDG
Sbjct: 172 EKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDG 231
Query: 497 PGPTGQRFCINSVALKFKPRKH 562
PGPTGQRFCINSVALKFKPRKH
Sbjct: 232 PGPTGQRFCINSVALKFKPRKH 253
>ref|XP_003355557.1| PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like
[Sus scrofa].
Length = 111
Score = 73.2 bits (178), Expect = 2e-13
Identities = 34/72 (47%), Positives = 42/72 (58%)
Frame = +2
Query: 338 TGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQR 517
+GWPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R
Sbjct: 25 SGWPSFHDVISSEAVTFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKR 77
Query: 518 FCINSVALKFKP 553
+CINS +L F P
Sbjct: 78 YCINSASLSFTP 89
>ref|NP_001090929.1| methionine-R-sulfoxide reductase B1 [Sus scrofa].
Length = 116
Score = 56.6 bits (135), Expect = 2e-08
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Frame = +2
Query: 251 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 427
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGYELFSSHSKYAHSSPWPAFTETIHADS--------VAKRPEHNR 63
Query: 428 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPRKH*PSP 574
A +V C +C LGH F DGP RF I S +LKF P+ SP
Sbjct: 64 PGA-LKVSCGRCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFIPKGQESSP 112
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,459,349
Number of extensions: 639560
Number of successful extensions: 2015
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2012
Number of HSP's successfully gapped: 4
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010098
(919 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083895.1| methionine-R-sulfoxide reductase B2, mitochondr... 273 1e-73
Alignment gi|NP_796066.1| methionine-R-sulfoxide reductase B3, mitochondr... 141 6e-34
Alignment gi|NP_038787.1| methionine-R-sulfoxide reductase B1 [Mus muscul... 54 2e-07
>ref|NP_083895.1| methionine-R-sulfoxide reductase B2, mitochondrial precursor [Mus
musculus].
Length = 175
Score = 273 bits (699), Expect = 1e-73
Identities = 134/181 (74%), Positives = 145/181 (80%)
Frame = +2
Query: 17 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 196
MAR RA GLP + R G A +G + D GSLTK + LS+++WQKKLTP
Sbjct: 1 MARLLRALRGLPLLQAPGRLARGCAGSG-------SKDTGSLTKSKRSLSEADWQKKLTP 53
Query: 197 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 376
EQF+VTREKGTE PFSG YLNNKE GMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA+G+
Sbjct: 54 EQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSK 113
Query: 377 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 556
GSDES TGILRR+DTSLG R EVVCKQCEAHLGHVFPDGP PTGQRFCINSVALKFKP
Sbjct: 114 GSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPS 173
Query: 557 K 559
K
Sbjct: 174 K 174
>ref|NP_796066.1| methionine-R-sulfoxide reductase B3, mitochondrial precursor [Mus
musculus].
Length = 186
Score = 141 bits (356), Expect = 6e-34
Identities = 65/130 (50%), Positives = 86/130 (66%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WP+F + + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPAFHDVISSEAIEFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 524 INSVALKFKP 553
INS +L F P
Sbjct: 152 INSASLSFTP 161
>ref|NP_038787.1| methionine-R-sulfoxide reductase B1 [Mus musculus].
Length = 116
Score = 53.5 bits (127), Expect = 2e-07
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +2
Query: 251 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 427
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +
Sbjct: 12 FQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDS---------VTKCPEKN 62
Query: 428 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPR 556
+V C +C LGH F DGP RF I S +LKF P+
Sbjct: 63 RPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPK 106
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,697,736
Number of extensions: 856273
Number of successful extensions: 2608
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2605
Number of HSP's successfully gapped: 3
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010098
(919 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036360.3| methionine-R-sulfoxide reductase B2, mitochondr... 299 3e-81
Alignment gi|NP_932346.1| methionine-R-sulfoxide reductase B3 isoform 1 [... 144 9e-35
Alignment gi|NP_001180390.1| methionine-R-sulfoxide reductase B3 isoform ... 142 3e-34
Alignment gi|NP_001180389.1| methionine-R-sulfoxide reductase B3 isoform ... 142 3e-34
Alignment gi|NP_001026849.1| methionine-R-sulfoxide reductase B3 isoform ... 142 3e-34
Alignment gi|NP_057416.1| methionine-R-sulfoxide reductase B1 [Homo sapie... 60 3e-09
>ref|NP_036360.3| methionine-R-sulfoxide reductase B2, mitochondrial precursor [Homo
sapiens].
Length = 182
Score = 299 bits (765), Expect = 3e-81
Identities = 146/182 (80%), Positives = 152/182 (83%)
Frame = +2
Query: 17 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 196
MAR GL RAV G+A GG G G+AGSL E L+KSEWQKKLTP
Sbjct: 1 MARLLWLLRGLTLGTAPRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLTP 60
Query: 197 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 376
EQF+VTREKGTEPPFSG YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS
Sbjct: 61 EQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 120
Query: 377 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 556
GSDES TGILRR+DTSLG+ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVALKFKPR
Sbjct: 121 GSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPR 180
Query: 557 KH 562
KH
Sbjct: 181 KH 182
>ref|NP_932346.1| methionine-R-sulfoxide reductase B3 isoform 1 [Homo sapiens].
Length = 192
Score = 144 bits (364), Expect = 9e-35
Identities = 71/153 (46%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Frame = +2
Query: 104 LSPKVGTGDAGSLTKREP---FLSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAG 274
L+ +G+ +GS ++ S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G
Sbjct: 23 LAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPG 82
Query: 275 MYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVC 454
+Y CV C +PLF SE K+ SG+GWPSF + + +D D S G R E C
Sbjct: 83 IYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTD-------DFSYGMHRVETSC 135
Query: 455 KQCEAHLGHVFPDGPGPTGQRFCINSVALKFKP 553
QC AHLGH+F DGP PTG+R+CINS AL F P
Sbjct: 136 SQCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 168
>ref|NP_001180390.1| methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].
Length = 185
Score = 142 bits (359), Expect = 3e-34
Identities = 67/130 (51%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSFHDVINSEAITFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 524 INSVALKFKP 553
INS AL F P
Sbjct: 152 INSAALSFTP 161
>ref|NP_001180389.1| methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].
Length = 185
Score = 142 bits (359), Expect = 3e-34
Identities = 67/130 (51%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSFHDVINSEAITFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 524 INSVALKFKP 553
INS AL F P
Sbjct: 152 INSAALSFTP 161
>ref|NP_001026849.1| methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].
Length = 185
Score = 142 bits (359), Expect = 3e-34
Identities = 67/130 (51%), Positives = 85/130 (65%)
Frame = +2
Query: 164 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 343
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 344 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 523
WPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSFHDVINSEAITFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 524 INSVALKFKP 553
INS AL F P
Sbjct: 152 INSAALSFTP 161
>ref|NP_057416.1| methionine-R-sulfoxide reductase B1 [Homo sapiens].
Length = 116
Score = 60.1 bits (144), Expect = 3e-09
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +2
Query: 251 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 427
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADS--------VAKRPEHNR 63
Query: 428 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPR 556
A +V C +C LGH F DGP P RF I S +LKF P+
Sbjct: 64 SEA-LKVSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFVPK 106
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,333,417
Number of extensions: 1012849
Number of successful extensions: 3037
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3032
Number of HSP's successfully gapped: 6
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010098
(919 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 900 0.0
>Sscrofa_Chr10
|| Length = 79102373
Score = 900 bits (454), Expect = 0.0
Identities = 461/462 (99%), Gaps = 1/462 (0%)
Strand = Plus / Minus
Query: 459 agtgcgaagctcaccttggccatgtgtttcctgatggacctgggcctacaggtcagaggt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544891 agtgcgaagctcaccttggccatgtgtttcctgatggacctgggcctacaggtcagaggt 57544832
Query: 519 tttgcatcaacagtgtggcactcaagttcaaaccaaggaaacactgaccatcgccaggag 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544831 tttgcatcaacagtgtggcactcaagttcaaaccaaggaaacactgaccatcgccaggag 57544772
Query: 579 tccctttctcttccaccctctcatttccaaactcgattttcataatttatgcaaatgact 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544771 tccctttctcttccaccctctcatttccaaactcgattttcataatttatgcaaatgact 57544712
Query: 639 agttttattaatgaccaaactaggctaagcttgctggcataccttctctaattcattacc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544711 agttttattaatgaccaaactaggctaagcttgctggcataccttctctaattcattacc 57544652
Query: 699 tggagtcagctccaccctggctctggctctgactagaatttcacggaatgacagaggggc 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544651 tggagtcagctccaccctggctctggctctgactagaatttcacggaatgacagaggggc 57544592
Query: 759 agtcctttcccttaaatcaacatctgtgggctttgccaggaccagagggcatgactcttt 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544591 agtcctttcccttaaatcaacatctgtgggctttgccaggaccagagggcatgactcttt 57544532
Query: 819 ggggacattaggaggctgatggataagccaaagaactcctataaaactatgctgaatttt 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544531 ggggacattaggaggctgatggataagccaaagaactcctataaaactatgctgaatttt 57544472
Query: 879 -cattgcagtcaagtgtttcacagacatgtataggtgagagg 919
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 57544471 ccattgcagtcaagtgtttcacagacatgtataggtgagagg 57544430
Score = 615 bits (310), Expect = e-173
Identities = 661/776 (85%), Gaps = 24/776 (3%)
Strand = Plus / Plus
Query: 120 gaaccggagacgcagggtcccttacaaagcgtgagccgttcctctccaagagtgag--tg 177
|||| |||||| |||| || |||||||||||||||||||| ||||||||||||||| ||
Sbjct: 14945546 gaacaggagacacaggatctcttacaaagcgtgagccgtttctctccaagagtgagagtg 14945605
Query: 178 gcaaaagaagctgactccagagcaattccacgtcacgagagaaaaagggacagaaccgcc 237
|||| |||||||||||| | ||||||||| ||||| |||||||||||||| |||| ||
Sbjct: 14945606 gcaagagaagctgactcgacagcaattccccgtcaggagagaaaaagggatggaacagct 14945665
Query: 238 tttcagtgggacctacctgaataacaaggaagcaggaatgtatcactgtgtgtgctgtga 297
||||||||||||||||||| ||||||||||||||| |||| || |||||| ||||||
Sbjct: 14945666 tttcagtgggacctacctgcctaacaaggaagcagggatgtgtcgctgtgtacactgtga 14945725
Query: 298 cagcccactcttcagctctgagaaaaagtactgctctggcactggatggccttcattttc 357
||| | |||||||| | ||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct: 14945726 cagtc-actcttcaccgctgaggaaaagtacttctcgggcactggatggccttcattttc 14945784
Query: 358 tgaggctcacggcacatctggctctgatgagagtgacacagggatcctgagacgtgtgga 417
||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 14945785 tgaggctcacggcacatctggctctgatgagggtgacccaggaatcctgagacgtgtgga 14945844
Query: 418 cacctcgctgggaacagctcgcacggaggttgtctgcaagcagtgcgaagctcaccttgg 477
|||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 14945845 cacctcactgggaccagctggcccggaggttgtctgcaagcagtgcgaagctcaccttgg 14945904
Query: 478 ccatgtgtttcctgatggacctgggcctacaggtcagaggttttgcatcaacagtgtggc 537
||| |||||||||||||||||||||| || ||||| ||| || ||||||||||||||||
Sbjct: 14945905 ccacgtgtttcctgatggacctgggcatagtggtcacagggttcgcatcaacagtgtggc 14945964
Query: 538 actcaagttcaaaccaaggaaacactgaccatcgccaggagtccctttctctt--ccacc 595
|||| | ||| || ||||| |||| | || ||| ||||||| ||| ||| ||||
Sbjct: 14945965 gctcacggtcagttcagggaaatactgtctgtctccaagagtccc-ttcccttcaccacg 14946023
Query: 596 ctctcatttccaaactcgattttcataatttatgcaaatgactagttttattaatgacca 655
||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||
Sbjct: 14946024 ctcacatttccaaactcggttttcataatttatgcaaatgactggttttattaactacca 14946083
Query: 656 aactaggctaagcttgctgg------------cataccttctctaattcattacctggag 703
||||||||| || ||||||| || ||||||||| ||||||| ||| |
Sbjct: 14946084 aactaggctgagtttgctggcaccaagcaagtcacaccttctctcattcattgcctaagg 14946143
Query: 704 tcagctccaccctggctctggctctgactagaatttcacggaatgacagaggggcagtcc 763
|||||| ||| || |||||||||||||| ||||| |||||||| |||||||| |
Sbjct: 14946144 tcagctgcactctagctctggctctgac------ttcacagaatgacaaaggggcagcca 14946197
Query: 764 tttcccttaaatcaacatctgtgggctttgccaggaccagagggcatgactctttgggga 823
||||||| |||||||| |||||||||||| | |||| ||||||| ||||||||||||||
Sbjct: 14946198 tttccctaaaatcaactcctgtgggctttgactggacaagagggcgtgactctttgggga 14946257
Query: 824 cattaggaggctgatggataagccaaagaactcctataaaactatgctgaattttc 879
|||||||||||||||||||||||||| | ||||| ||| |||| ||||||||||
Sbjct: 14946258 tattaggaggctgatggataagccaaaacattcctacaaacctatcctgaattttc 14946313
Score = 299 bits (151), Expect = 1e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 310 cagctctgagaaaaagtactgctctggcactggatggccttcattttctgaggctcacgg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57545896 cagctctgagaaaaagtactgctctggcactggatggccttcattttctgaggctcacgg 57545837
Query: 370 cacatctggctctgatgagagtgacacagggatcctgagacgtgtggacacctcgctggg 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57545836 cacatctggctctgatgagagtgacacagggatcctgagacgtgtggacacctcgctggg 57545777
Query: 430 aacagctcgcacggaggttgtctgcaagcag 460
|||||||||||||||||||||||||||||||
Sbjct: 57545776 aacagctcgcacggaggttgtctgcaagcag 57545746
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 2 gtgcgcagcagcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57565691 gtgcgcagcagcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagag 57565632
Query: 62 gtgctctcgcgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcgga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57565631 gtgctctcgcgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcgga 57565572
Query: 122 accggagacgcagg 135
||||||||||||||
Sbjct: 57565571 accggagacgcagg 57565558
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 132 cagggtcccttacaaagcgtgagccgttcctctccaagagtgagtggcaaaagaagctga 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57557991 cagggtcccttacaaagcgtgagccgttcctctccaagagtgagtggcaaaagaagctga 57557932
Query: 192 ctccagagcaattccacgtcacgagagaaaaagggacagaaccg 235
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57557931 ctccagagcaattccacgtcacgagagaaaaagggacagaaccg 57557888
Score = 155 bits (78), Expect = 5e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 235 gcctttcagtgggacctacctgaataacaaggaagcaggaatgtatcactgtgtgtgctg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57552014 gcctttcagtgggacctacctgaataacaaggaagcaggaatgtatcactgtgtgtgctg 57551955
Query: 295 tgacagcccactcttcag 312
||||||||||||||||||
Sbjct: 57551954 tgacagcccactcttcag 57551937
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,000,446
Number of extensions: 182
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 8
Length of query: 919
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 898
Effective length of database: 2,808,413,156
Effective search space: 2521955014088
Effective search space used: 2521955014088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)