Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010337
(1319 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [... 380 e-105
Alignment gi|NP_001192978.1| cytochrome b reductase 1 [Bos taurus]. 196 5e-50
Alignment gi|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bo... 196 5e-50
Alignment gi|NP_777262.1| cytochrome b561 [Bos taurus]. 139 6e-33
>ref|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [Bos taurus].
Length = 265
Score = 380 bits (976), Expect = e-105
Identities = 183/235 (77%), Positives = 193/235 (82%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLS LAL SLGSMCIL TIYWMRYWH GFAWDG++L FNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSVLALCSLGSMCILFTIYWMRYWHGGFAWDGSMLMFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 789
AASL YRLPQSWVGP+LPWK GHAAMHL+AF+LTVLGL AVF FHNH KIP+LYSLHSWL
Sbjct: 61 AASLVYRLPQSWVGPRLPWKSGHAAMHLLAFLLTVLGLHAVFEFHNHAKIPHLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFSVFLLPWASMWLRSLLKPIHVFFGASILSLAIASVVSGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
FSLKNGT +YSNLP EAVFAN AGM YIL ASSWKRPEPG+QAER+
Sbjct: 181 FSLKNGTKTYSNLPSEAVFANCAGMLVVVFGLLVLYILLASSWKRPEPGMQAERE 235
>ref|NP_001192978.1| cytochrome b reductase 1 [Bos taurus].
Length = 285
Score = 196 bits (497), Expect = 5e-50
Identities = 99/224 (44%), Positives = 134/224 (59%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ + +G WDGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L AVF+FHN +KIPN+YSLHSW+G+T
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 126
Query: 799 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 978
V L+ Q LGF VFLLPWA + LR+LL PIHV+ EKL F+L
Sbjct: 127 AVILYILQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLFIFGTVIATVLMGLTEKLIFAL 186
Query: 979 KNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1110
KN SYS+LP E +F N+ G+ +I+ WKRP+
Sbjct: 187 KN--PSYSSLPPEGIFTNTLGLLILVFGALIFWIVTRPQWKRPK 228
>ref|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bos taurus].
Length = 285
Score = 196 bits (497), Expect = 5e-50
Identities = 99/224 (44%), Positives = 134/224 (59%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ + +G WDGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L AVF+FHN +KIPN+YSLHSW+G+T
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 126
Query: 799 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 978
V L+ Q LGF VFLLPWA + LR+LL PIHV+ EKL F+L
Sbjct: 127 AVILYILQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLFIFGTVIATVLMGLTEKLIFAL 186
Query: 979 KNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1110
KN SYS+LP E +F N+ G+ +I+ WKRP+
Sbjct: 187 KN--PSYSSLPPEGIFTNTLGLLILVFGALIFWIVTRPQWKRPK 228
>ref|NP_777262.1| cytochrome b561 [Bos taurus].
Length = 273
Score = 139 bits (350), Expect = 6e-33
Identities = 85/222 (38%), Positives = 109/222 (49%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + + T W+ + G AW+ L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 45 LGLIVVAMTGAWLGMYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 101
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H+ AF++ ++GL AVF H + +LYSLHSW GI LF QW +G
Sbjct: 102 KRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVG 161
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P HVFF E L F L T YS
Sbjct: 162 FSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFEL---GTKYSMFEP 218
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1140
E V AN G+ YIL + WKRP LQAE Q L
Sbjct: 219 EGVLANVLGLLLATFATVILYILTRADWKRP---LQAEEQAL 257
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,409,296
Number of extensions: 1709938
Number of successful extensions: 8906
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8855
Number of HSP's successfully gapped: 4
Length of query: 439
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 334
Effective length of database: 14,207,134
Effective search space: 4745182756
Effective search space used: 4745182756
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010337
(1319 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate d... 340 2e-93
Alignment gi|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 ... 182 8e-46
Alignment gi|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochro... 137 2e-32
>ref|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate dependent 3 protein
[Canis familiaris].
Length = 242
Score = 340 bits (872), Expect = 2e-93
Identities = 165/242 (68%), Positives = 178/242 (73%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLS +L+ LG MCI+ TIYW++ WH GFAWDGT+L FN+HPV MV G VVLYS
Sbjct: 1 MAVGWFYLSFYSLWFLGLMCIILTIYWVQLWHGGFAWDGTLLMFNYHPVFMVVGSVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 789
AASL YRLPQSWVGPKLPWK+GHA +HL+AFILTVLGL AVF H +I NLYSLHSWL
Sbjct: 61 AASLLYRLPQSWVGPKLPWKIGHAMLHLLAFILTVLGLVAVFQLHRRSRITNLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GI TVFLFACQWFLGFVVFLLPW SV LRSLLKPIHVFF NEKLF
Sbjct: 121 GIVTVFLFACQWFLGFVVFLLPWMSVWLRSLLKPIHVFFGVVILSLSIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1149
FSL N T YSNLP EA+FANS GM YIL SSWKRPEPG+ E Q LL
Sbjct: 181 FSLNNATQPYSNLPSEAIFANSLGMLVVVFGLLVLYILLVSSWKRPEPGILTEGQPLLRD 240
Query: 1150 EE 1155
E
Sbjct: 241 GE 242
>ref|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 [Canis familiaris].
Length = 280
Score = 182 bits (461), Expect = 8e-46
Identities = 86/212 (40%), Positives = 124/212 (58%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ ++ W+ ++ +G WDGT L FNWHPV MVTG V + A + YRLP +W
Sbjct: 17 VGFLAVVFSLVWVLHYREGLGWDGTALEFNWHPVFMVTGFVFIQGIAIIVYRLPWTWKCS 76
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
KL K HA +H +A IL ++ L +VF++HN IPN+YSLHSW+G+T V L+ Q LG
Sbjct: 77 KLLMKSIHAGLHTVAAILVIISLVSVFDYHNAGNIPNMYSLHSWVGLTVVILYILQLLLG 136
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
+VFLLPWA + LR+L+ P+HV+ EKL F G + YS+ P
Sbjct: 137 VLVFLLPWAPLSLRALVMPMHVYSGLLIFGTVIATVLMGVTEKLIF----GVSGYSSFPP 192
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1110
E VFAN+ G+ +I+ W+RP+
Sbjct: 193 EGVFANTLGLLNVVFGALIFWIVTRPQWQRPK 224
>ref|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis
familiaris].
Length = 252
Score = 137 bits (345), Expect = 2e-32
Identities = 83/222 (37%), Positives = 109/222 (49%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G AW+G L FN HP+ MV G++ L A L YR+ ++
Sbjct: 24 LGLTVVAMTGAWLGLYRGGIAWEGA-LQFNVHPLCMVIGLIFLQGDALLVYRVFRNEA-- 80
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H++A I+ ++GL AVF++H + +LYSLHSW GI L+ QW +G
Sbjct: 81 KRTTKVLHGLLHVLALIIALVGLVAVFDYHRQKGYADLYSLHSWCGILVFVLYFMQWLVG 140
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P HVFF E L F L YS
Sbjct: 141 FSFFLFPGASFSLRSRYRPQHVFFGATIFVLSLGTALLGLKEALLFKL---GAKYSTFEA 197
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1140
E V AN G+ YIL + WKRP QAE Q L
Sbjct: 198 EGVLANVLGLLLASFGVTVLYILTRADWKRPP---QAEEQAL 236
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,653,788
Number of extensions: 1751680
Number of successful extensions: 8863
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8796
Number of HSP's successfully gapped: 3
Length of query: 439
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 333
Effective length of database: 15,340,888
Effective search space: 5108515704
Effective search space used: 5108515704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010337
(1319 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent ... 444 e-125
Alignment gi|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent ... 444 e-125
Alignment gi|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa]. 190 2e-48
Alignment gi|NP_001090991.1| cytochrome b561 [Sus scrofa]. 141 9e-34
>ref|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 2
[Sus scrofa].
Length = 242
Score = 444 bits (1141), Expect = e-125
Identities = 216/242 (89%), Positives = 216/242 (89%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 789
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFGASILSLAIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1149
FSLKNGTTSYSNLPDEAVFANSAGM YILQASSWKRPEPGLQAERQTLLHG
Sbjct: 181 FSLKNGTTSYSNLPDEAVFANSAGMLVVVFGLLVLYILQASSWKRPEPGLQAERQTLLHG 240
Query: 1150 EE 1155
EE
Sbjct: 241 EE 242
>ref|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 1
[Sus scrofa].
Length = 242
Score = 444 bits (1141), Expect = e-125
Identities = 216/242 (89%), Positives = 216/242 (89%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 789
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFGASILSLAIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1149
FSLKNGTTSYSNLPDEAVFANSAGM YILQASSWKRPEPGLQAERQTLLHG
Sbjct: 181 FSLKNGTTSYSNLPDEAVFANSAGMLVVVFGLLVLYILQASSWKRPEPGLQAERQTLLHG 240
Query: 1150 EE 1155
EE
Sbjct: 241 EE 242
>ref|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa].
Length = 285
Score = 190 bits (482), Expect = 2e-48
Identities = 96/224 (42%), Positives = 132/224 (58%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ ++ +G WDGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L AVF+FHN KIPN+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNARKIPNMYSLHSWVGLA 126
Query: 799 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 978
V L+ Q LGF VFLLPWA + LR+LL PIHV+ EKL F+L
Sbjct: 127 AVILYMLQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFAL 186
Query: 979 KNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1110
+ + +YS LP E VF N+ G+ +I+ WKRP+
Sbjct: 187 Q--SPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPK 228
>ref|NP_001090991.1| cytochrome b561 [Sus scrofa].
Length = 252
Score = 141 bits (355), Expect = 9e-34
Identities = 85/222 (38%), Positives = 111/222 (50%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G AW+ L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 24 LGLTVVAVTGAWLGAYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 80
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H++AF++ ++GL AVF++H + I +LYSLHSW GI LF QW +G
Sbjct: 81 KRTTKILHGLLHVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQWLVG 140
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
FL P AS LRS +P HVFF E L F L T YS
Sbjct: 141 LGFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLFQL---GTKYSAFES 197
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1140
E V AN G+ YIL + WKRP LQAE Q L
Sbjct: 198 EGVLANVLGLLLVAFGAVVLYILTRADWKRP---LQAEEQAL 236
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,957,457
Number of extensions: 1122318
Number of successful extensions: 5754
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5707
Number of HSP's successfully gapped: 4
Length of query: 439
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 337
Effective length of database: 8,804,438
Effective search space: 2967095606
Effective search space used: 2967095606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010337
(1319 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus... 342 4e-94
Alignment gi|NP_082869.2| cytochrome b reductase 1 [Mus musculus]. 176 5e-44
Alignment gi|NP_031831.2| cytochrome b561 [Mus musculus]. 137 1e-32
>ref|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus musculus].
Length = 242
Score = 342 bits (877), Expect = 4e-94
Identities = 163/242 (67%), Positives = 179/242 (73%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 609
MA GWFYLS + L SLGSMCIL T YWM+YW GFAWDGT+L FNWHPVLMV GMVVLY
Sbjct: 1 MASGWFYLSCMVLGSLGSMCILFTAYWMQYWRGGFAWDGTVLMFNWHPVLMVAGMVVLYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 789
AASL YRLP SWVGP+LPWK+ HAA+HL+AF TV+GL AVF FHNH +I +LYSLHSWL
Sbjct: 61 AASLVYRLPSSWVGPRLPWKVLHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTV LFACQWFLGF VFLLPWAS LRSLLKP+HVFF NEKLF
Sbjct: 121 GITTVVLFACQWFLGFAVFLLPWASQWLRSLLKPLHVFFGACILSLSITSVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1149
F LKN T YS+LP EAVFANS G+ Y+L ASSWKRP+PG +RQ LLH
Sbjct: 181 FVLKNATKPYSSLPGEAVFANSTGLLVVAFGLLVLYVLLASSWKRPDPGALTDRQPLLHD 240
Query: 1150 EE 1155
E
Sbjct: 241 RE 242
>ref|NP_082869.2| cytochrome b reductase 1 [Mus musculus].
Length = 290
Score = 176 bits (445), Expect = 5e-44
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 1/215 (0%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ + W+ ++ +G W+G+ L FNWHPVL VTG V + A + YRLP +W
Sbjct: 19 VGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCS 78
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
KL K HA ++ +A IL ++ + AVF +HN +K+P++YSLHSW+G+T + L+ Q +G
Sbjct: 79 KLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQLVVG 138
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F VFLLPWA LR+++ PIHV+ EKLFF LK+ SY + P
Sbjct: 139 FFVFLLPWAPPSLRAIVMPIHVYSGLLLFGTVIATVLMGVTEKLFFVLKH--PSYHSFPP 196
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRP-EPG 1116
E VF N+ G+ +I+ WKRP EPG
Sbjct: 197 EGVFTNTLGLLILVFGALIFWIVTRPQWKRPREPG 231
>ref|NP_031831.2| cytochrome b561 [Mus musculus].
Length = 250
Score = 137 bits (346), Expect = 1e-32
Identities = 83/222 (37%), Positives = 109/222 (49%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G AW+ + L FN HP+ MV GM+ L A L YR+ +
Sbjct: 22 LGLTVVAVTGAWLGLYRGGIAWESS-LQFNVHPLCMVIGMIFLQGDALLVYRVFRREA-- 78
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H+ AFI+ ++GL AVF++H + +LYSLHSW GI L+ QW +G
Sbjct: 79 KRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLVG 138
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P H+FF E L F L + YS
Sbjct: 139 FSFFLFPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLFKL---GSKYSTFEP 195
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1140
E V AN G+ YIL + WKRP QAE Q L
Sbjct: 196 EGVLANVLGLLLVCFGVVVLYILAQADWKRPS---QAEEQAL 234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,439,806
Number of extensions: 1396288
Number of successful extensions: 6831
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6788
Number of HSP's successfully gapped: 3
Length of query: 439
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 335
Effective length of database: 12,493,815
Effective search space: 4185428025
Effective search space used: 4185428025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010337
(1319 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 i... 355 7e-98
Alignment gi|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 i... 345 4e-95
Alignment gi|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isof... 345 4e-95
Alignment gi|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapien... 176 4e-44
Alignment gi|NP_001017916.1| cytochrome b561 [Homo sapiens]. 133 3e-31
Alignment gi|NP_001017917.1| cytochrome b561 [Homo sapiens]. 133 3e-31
Alignment gi|NP_001906.3| cytochrome b561 [Homo sapiens]. 133 3e-31
Alignment gi|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sap... 60 3e-09
>ref|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 isoform 1 [Homo sapiens].
Length = 259
Score = 355 bits (910), Expect = 7e-98
Identities = 173/247 (70%), Positives = 185/247 (74%)
Frame = +1
Query: 415 ECLIRMAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGM 594
EC+IRM G FYLS L L SLGSMCIL TIYWM+YW GFAW+G+I FNWHPVLMV GM
Sbjct: 13 ECVIRMVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGM 72
Query: 595 VVLYSAASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYS 774
VV Y ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF FHNH + NLYS
Sbjct: 73 VVFYGGASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYS 132
Query: 775 LHSWLGITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXX 954
LHSWLGITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF
Sbjct: 133 LHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGI 192
Query: 955 NEKLFFSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQ 1134
NEKLFFSLKN T Y +LP EAVFANS GM YIL ASSWKRPEPG+ +RQ
Sbjct: 193 NEKLFFSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEPGILTDRQ 252
Query: 1135 TLLHGEE 1155
LLH E
Sbjct: 253 PLLHDGE 259
>ref|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo sapiens].
Length = 242
Score = 345 bits (886), Expect = 4e-95
Identities = 169/242 (69%), Positives = 180/242 (74%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 609
M G FYLS L L SLGSMCIL TIYWM+YW GFAW+G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 789
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF FHNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1149
FSLKN T Y +LP EAVFANS GM YIL ASSWKRPEPG+ +RQ LLH
Sbjct: 181 FSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEPGILTDRQPLLHD 240
Query: 1150 EE 1155
E
Sbjct: 241 GE 242
>ref|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo sapiens].
Length = 242
Score = 345 bits (886), Expect = 4e-95
Identities = 169/242 (69%), Positives = 180/242 (74%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 609
M G FYLS L L SLGSMCIL TIYWM+YW GFAW+G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 789
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL AVF FHNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGF VFLLPWAS+ LRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1149
FSLKN T Y +LP EAVFANS GM YIL ASSWKRPEPG+ +RQ LLH
Sbjct: 181 FSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEPGILTDRQPLLHD 240
Query: 1150 EE 1155
E
Sbjct: 241 GE 242
>ref|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapiens].
Length = 286
Score = 176 bits (446), Expect = 4e-44
Identities = 92/250 (36%), Positives = 134/250 (53%), Gaps = 1/250 (0%)
Frame = +1
Query: 442 WFYLSAL-ALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 618
W +L+ L + +G + ++ + W+ ++ +G WDG+ L FNWHPVLMVTG V + A
Sbjct: 7 WRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ + AVF HN I N+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLHSWVGLI 126
Query: 799 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 978
V + Q GF VFLLPWA + LR+ L PIHV+ EKL FSL
Sbjct: 127 AVICYLLQLLSGFSVFLLPWAPLSLRAFLMPIHVYSGIVIFGTVIATALMGLTEKLIFSL 186
Query: 979 KNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHGEE* 1158
++ +YS P E VF N+ G+ +I+ WKRP + T+LH
Sbjct: 187 RD--PAYSTFPPEGVFVNTLGLLILVFGALIFWIVTRPQWKRP----KEPNSTILHPNGG 240
Query: 1159 SRKGFQEQLP 1188
+ +G + +P
Sbjct: 241 TEQGARGSMP 250
>ref|NP_001017916.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 133 bits (335), Expect = 3e-31
Identities = 80/222 (36%), Positives = 108/222 (48%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G AW+ L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H+ A ++ ++GL AVF++H + +LYSLHSW GI L+ QW +G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P H+FF E L F+L YS
Sbjct: 140 FSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGG---KYSAFEP 196
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1140
E V AN G+ YIL + WKRP QAE Q L
Sbjct: 197 EGVLANVLGLLLACFGGAVLYILTRADWKRPS---QAEEQAL 235
>ref|NP_001017917.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 133 bits (335), Expect = 3e-31
Identities = 80/222 (36%), Positives = 108/222 (48%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G AW+ L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H+ A ++ ++GL AVF++H + +LYSLHSW GI L+ QW +G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P H+FF E L F+L YS
Sbjct: 140 FSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGG---KYSAFEP 196
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1140
E V AN G+ YIL + WKRP QAE Q L
Sbjct: 197 EGVLANVLGLLLACFGGAVLYILTRADWKRPS---QAEEQAL 235
>ref|NP_001906.3| cytochrome b561 [Homo sapiens].
Length = 251
Score = 133 bits (335), Expect = 3e-31
Identities = 80/222 (36%), Positives = 108/222 (48%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G AW+ L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H+ A ++ ++GL AVF++H + +LYSLHSW GI L+ QW +G
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVG 139
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
F FL P AS LRS +P H+FF E L F+L YS
Sbjct: 140 FSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGG---KYSAFEP 196
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1140
E V AN G+ YIL + WKRP QAE Q L
Sbjct: 197 EGVLANVLGLLLACFGGAVLYILTRADWKRPS---QAEEQAL 235
>ref|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sapiens].
Length = 157
Score = 60.5 bits (145), Expect = 3e-09
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 442 WFYLSAL-ALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 618
W +L+ L + +G + ++ + W+ ++ +G WDG+ L FNWHPVLMVTG V + AS
Sbjct: 7 WRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAS 66
Query: 619 LAYRLPQSWVGPKLPWKLGHA 681
+ + +G + HA
Sbjct: 67 FRFFSLSASMGSAFSPSISHA 87
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,448,149
Number of extensions: 1698736
Number of successful extensions: 8716
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8658
Number of HSP's successfully gapped: 8
Length of query: 439
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 333
Effective length of database: 14,802,980
Effective search space: 4929392340
Effective search space used: 4929392340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-010337
(1319 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 416 e-113
>Sscrofa_Chr02
|| Length = 162569375
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 613 gcgtcgctggcgtaccgcctgccccagtcatgggtagggcccaagctgccctggaagttg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700219 gcgtcgctggcgtaccgcctgccccagtcatgggtagggcccaagctgccctggaagttg 9700278
Query: 673 ggccacgcagccatgcacctgatggccttcatcctgactgtgctggggctggcggccgtc 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700279 ggccacgcagccatgcacctgatggccttcatcctgactgtgctggggctggcggccgtc 9700338
Query: 733 tttaactttcacaaccacgagaagatccccaacctctactccctgcacagctggctgggc 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9700339 tttaactttcacaaccacgagaagatccccaacctctactccctgcacagctggctgggc 9700398
Query: 793 atcaccaccgtcttcctcttcgcctgccag 822
||||||||||||||||||||||||||||||
Sbjct: 9700399 atcaccaccgtcttcctcttcgcctgccag 9700428
Score = 406 bits (205), Expect = e-110
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 409 aggagcgagtgcctgatcagaatggctgtgggatggttttacctgtcggccctggcgctg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9694957 aggagcgagtgcctgatcagaatggctgtgggatggttttacctgtcggccctggcgctg 9695016
Query: 469 ttctccctgggctccatgtgcatcctctccaccatctattggatgcggtactggcacaaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9695017 ttctccctgggctccatgtgcatcctctccaccatctattggatgcggtactggcacaaa 9695076
Query: 529 ggctttgcctgggatggcaccatactcacgttcaactggcacccggtgctcatggtgact 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9695077 ggctttgcctgggatggcaccatactcacgttcaactggcacccggtgctcatggtgact 9695136
Query: 589 ggcatggtggtgctctacagtgctg 613
|||||||||||||||||||||||||
Sbjct: 9695137 ggcatggtggtgctctacagtgctg 9695161
Score = 311 bits (157), Expect = 5e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 978 gaaaaatggcaccacttcatactccaacctgcccgatgaggccgtcttcgcgaacagtgc 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9702230 gaaaaatggcaccacttcatactccaacctgcccgatgaggccgtcttcgcgaacagtgc 9702289
Query: 1038 ggggatgctggtggtggtctttgggctgctggtgctctatatcttacaggcctcgtcttg 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9702290 ggggatgctggtggtggtctttgggctgctggtgctctatatcttacaggcctcgtcttg 9702349
Query: 1098 gaaacgcccagagccagggctccaggccgaaagacag 1134
|||||||||||||||||||||||||||||||||||||
Sbjct: 9702350 gaaacgcccagagccagggctccaggccgaaagacag 9702386
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 820 cagtggttcttgggctttgtggtctttctgctgccctgggcgtctgtgcggctgcgcagc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9701373 cagtggttcttgggctttgtggtctttctgctgccctgggcgtctgtgcggctgcgcagc 9701432
Query: 880 ctccttaaacccatccacgtcttctttggagcctccattctctctctggccattgcgtct 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9701433 ctccttaaacccatccacgtcttctttggagcctccattctctctctggccattgcgtct 9701492
Query: 940 gtcatttccggcatcaatgagaagctcttcttcagt 975
||||||||||||||||||||||||||||||||||||
Sbjct: 9701493 gtcatttccggcatcaatgagaagctcttcttcagt 9701528
Score = 274 bits (138), Expect = 1e-70
Identities = 179/190 (94%), Gaps = 2/190 (1%)
Strand = Plus / Plus
Query: 1132 cagaccctgttgcacggggaggagtgaagcaggaaggggttccaggagcagttgccaggc 1191
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 9703010 cagaccctgttgcacggggaggagtgaagcaggagggggttccaggagcagtcgccaggc 9703069
Query: 1192 ggtcttcagaagctctgcttttccgggggctcccgtctggtt-tgggccccagtccccct 1250
|||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct: 9703070 ggtcttcagaggctctgctttcccgggggctcccatctggttcggggccccagtccccct 9703129
Query: 1251 cgcctctgtgctgggcctgctct-cccacagcctgctgccaaccccctctccatggtggc 1309
||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 9703130 cgcctctgtgctgggcctgctctccccacagcctgctgctcaccccctctgcatggtggc 9703189
Query: 1310 tttggctgct 1319
||||||||||
Sbjct: 9703190 tttggctgct 9703199
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 161 ggtggtggtttttaagtacggaagggcccttggttccaccggaggaatctgccgtgggtc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690278 ggtggtggtttttaagtacggaagggcccttggttccaccggaggaatctgccgtgggtc 9690337
Query: 221 cccgagttcctggagctgtcttccgtatacctgagtcagaccagagcacagtccgaaggg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690338 cccgagttcctggagctgtcttccgtatacctgagtcagaccagagcacagtccgaaggg 9690397
Query: 281 cggg 284
||||
Sbjct: 9690398 cggg 9690401
Score = 224 bits (113), Expect = 1e-55
Identities = 125/129 (96%)
Strand = Plus / Plus
Query: 283 ggcaggagggctcatctgtgtactgtgtgcagtaaaacattccaaccatctgtcaggaaa 342
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9691614 ggcaggagggctcatctgtgtactgtgtgcagtaaaacattccagccatctgtcaggaaa 9691673
Query: 343 gtgttcccactatggatttcaagtctgtctcaaagcagcagtccaggaccaggacctctt 402
|||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct: 9691674 gtgttcccactatggatttcaagtctgtctcagagcaacagtccaagaccaggacctctt 9691733
Query: 403 ctagggagg 411
|||||||||
Sbjct: 9691734 ctagggagg 9691742
Score = 174 bits (88), Expect = 8e-41
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 69 tctgggactctcgggagctgcggctccggcgccaggtggcaagacgcgggtctcggagac 128
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9690032 tctgggaccctcgggagcggcggctccggcgccaggtggcaagacgcgggtctcggagac 9690091
Query: 129 gccagcctccgtgcatcccactgtggttcgggggtg 164
||||||||||||||||||||||||||||||||||||
Sbjct: 9690092 gccagcctccgtgcatcccactgtggttcgggggtg 9690127
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,413,409
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 9
Length of query: 1319
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1298
Effective length of database: 2,808,413,156
Effective search space: 3645320276488
Effective search space used: 3645320276488
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)