Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012119
(1174 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069941.1| lipid phosphate phosphohydrolase 3 [Bos taur... 315 6e-86
Alignment gi|NP_001073798.1| lipid phosphate phosphohydrolase 1 [Bos taur... 133 3e-31
Alignment gi|NP_001039355.1| lipid phosphate phosphohydrolase 2 [Bos taur... 112 6e-25
Alignment gi|XP_002688955.1| PREDICTED: phosphatidic acid phosphatase typ... 107 2e-23
Alignment gi|XP_001789251.2| PREDICTED: phosphatidic acid phosphatase typ... 107 2e-23
>ref|NP_001069941.1| lipid phosphate phosphohydrolase 3 [Bos taurus].
Length = 311
Score = 315 bits (806), Expect = 6e-86
Identities = 155/178 (87%), Positives = 157/178 (88%)
Frame = +2
Query: 617 MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK 796
MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK
Sbjct: 1 MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK 60
Query: 797 PYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ 976
PYHRGFYCNDE+IKYP KTGETIND TGEFYRIYYLKEKSRSTIQ
Sbjct: 61 PYHRGFYCNDESIKYPQKTGETINDAVLTAVGIVIAILAIITGEFYRIYYLKEKSRSTIQ 120
Query: 977 NPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGRLRPHFLNVWHPDFSQINCSEGYIQ 1150
NPYVAALYKQVGCF GCAISQSFTDIAKVSIGRLRPHFLNV +PDFSQINCS GYIQ
Sbjct: 121 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLNVCNPDFSQINCSVGYIQ 178
>ref|NP_001073798.1| lipid phosphate phosphohydrolase 1 [Bos taurus].
Length = 285
Score = 133 bits (335), Expect = 3e-31
Identities = 70/146 (47%), Positives = 91/146 (62%)
Frame = +2
Query: 713 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 892
R+ + LD+ C+ +AGLPF I+ TS P+ RG +CNDE+IKYP K +TI
Sbjct: 6 RLPYVALDVLCVLLAGLPFAIL-TSRHTPFQRGLFCNDESIKYPYKE-DTIPYPLLGGII 63
Query: 893 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSI 1072
GE +Y+ S S I+N Y+A +YK +G F G A SQS TDIAK SI
Sbjct: 64 IPFSIIVMIVGETLSVYFSLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSI 123
Query: 1073 GRLRPHFLNVWHPDFSQINCSEGYIQ 1150
GRLRPHFL+V PD+S+INCS+GYI+
Sbjct: 124 GRLRPHFLDVCDPDWSKINCSDGYIE 149
>ref|NP_001039355.1| lipid phosphate phosphohydrolase 2 [Bos taurus].
Length = 287
Score = 112 bits (280), Expect = 6e-25
Identities = 64/147 (43%), Positives = 86/147 (58%)
Frame = +2
Query: 710 KRVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXX 889
+R + + LD+ C+ +A LP I+ T PY RGFYC D++I+YP + +TI
Sbjct: 3 RRWVFVLLDVLCVLVAALPCAIL-TFVNTPYKRGFYCGDDSIRYPYRP-DTITHGLMAGV 60
Query: 890 XXXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVS 1069
GE Y +Y + SRS N Y+AALYK VG F G A+SQS TD+AK
Sbjct: 61 IITATVILVSAGEAYLVYTDRLYSRSDFNN-YLAALYKVVGTFLFGAAVSQSLTDLAKYM 119
Query: 1070 IGRLRPHFLNVWHPDFSQINCSEGYIQ 1150
GRLRP+FL V PD+S++NCS Y+Q
Sbjct: 120 TGRLRPNFLAVCDPDWSRVNCS-AYVQ 145
>ref|XP_002688955.1| PREDICTED: phosphatidic acid phosphatase type 2B-like [Bos taurus].
Length = 427
Score = 107 bits (268), Expect = 2e-23
Identities = 56/147 (38%), Positives = 78/147 (53%)
Frame = +2
Query: 719 LLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXXXX 898
LL+ LDL CL + LP ++ ET ++P+ +GF+CND TI+YP I D
Sbjct: 150 LLVALDLICLMLVSLPIVLSETGLLEPHIQGFFCNDTTIQYPRMAHYIIEDSALIKMGFF 209
Query: 899 XXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGR 1078
GE R+ L+ S + + + Y+A +YKQ+ F G S S T IAK++ G+
Sbjct: 210 ISIFTISLGELIRVRGLQLSSPAFMSSAYMAMIYKQLRAFIFGGLASFSLTSIAKMTTGQ 269
Query: 1079 LRPHFLNVWHPDFSQINCSEGYIQTTS 1159
LRPHFL PD + NC GYI S
Sbjct: 270 LRPHFLATCLPDPTSFNCENGYITNYS 296
>ref|XP_001789251.2| PREDICTED: phosphatidic acid phosphatase type 2B-like [Bos taurus].
Length = 427
Score = 107 bits (268), Expect = 2e-23
Identities = 56/147 (38%), Positives = 78/147 (53%)
Frame = +2
Query: 719 LLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXXXX 898
LL+ LDL CL + LP ++ ET ++P+ +GF+CND TI+YP I D
Sbjct: 150 LLVALDLICLMLVSLPIVLSETGLLEPHIQGFFCNDTTIQYPRMAHYIIEDSALIKMGFF 209
Query: 899 XXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGR 1078
GE R+ L+ S + + + Y+A +YKQ+ F G S S T IAK++ G+
Sbjct: 210 ISIFTISLGELIRVRGLQLSSPAFMSSAYMAMIYKQLRAFIFGGLASFSLTSIAKMTTGQ 269
Query: 1079 LRPHFLNVWHPDFSQINCSEGYIQTTS 1159
LRPHFL PD + NC GYI S
Sbjct: 270 LRPHFLATCLPDPTSFNCENGYITNYS 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,948,659
Number of extensions: 1144321
Number of successful extensions: 4892
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4870
Number of HSP's successfully gapped: 5
Length of query: 391
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,240,222
Effective search space: 4086943714
Effective search space used: 4086943714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012119
(1174 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536696.2| PREDICTED: similar to phosphatidic acid phospha... 310 2e-84
Alignment gi|XP_855263.1| PREDICTED: similar to phosphatidic acid phospha... 104 2e-22
Alignment gi|XP_849687.1| PREDICTED: similar to phosphatidic acid phospha... 92 1e-18
>ref|XP_536696.2| PREDICTED: similar to phosphatidic acid phosphatase type 2B [Canis
familiaris].
Length = 312
Score = 310 bits (793), Expect = 2e-84
Identities = 151/178 (84%), Positives = 155/178 (87%)
Frame = +2
Query: 617 MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK 796
MQNYKYDKAI ESK GGSPALNNNPRKGGSKR+LLICLDLFCLFMAGLPF+IIETSTIK
Sbjct: 1 MQNYKYDKAIAPESKTGGSPALNNNPRKGGSKRMLLICLDLFCLFMAGLPFLIIETSTIK 60
Query: 797 PYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ 976
PYHRGFYCNDE+IKYPLK GETIND TGEFYRIYYLKEKSRSTIQ
Sbjct: 61 PYHRGFYCNDESIKYPLKIGETINDAVLCAVGIVIAILAIITGEFYRIYYLKEKSRSTIQ 120
Query: 977 NPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGRLRPHFLNVWHPDFSQINCSEGYIQ 1150
NPYVAALYKQVGCF GCAISQSFTDIAKVSIGRLRPHFLNV +PDFSQINCSEGYIQ
Sbjct: 121 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLNVCNPDFSQINCSEGYIQ 178
>ref|XP_855263.1| PREDICTED: similar to phosphatidic acid phosphatase type 2C isoform 3
[Canis familiaris].
Length = 379
Score = 104 bits (259), Expect = 2e-22
Identities = 62/136 (45%), Positives = 79/136 (58%)
Frame = +2
Query: 755 AGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFY 934
A LPF I+ T PY RGFYC D++I+YP + +TI GE Y
Sbjct: 109 ASLPFAIL-TLVNAPYKRGFYCADDSIRYPYRP-DTITHGLMAGVTITATVVLVSAGEAY 166
Query: 935 RIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGRLRPHFLNVWHPD 1114
+Y + SRS N YVAA+YK +G F G A+SQS TD+AK IGRLRP+FL V PD
Sbjct: 167 LVYTDRLYSRSDFNN-YVAAVYKVLGTFLFGAAVSQSLTDLAKYMIGRLRPNFLAVCDPD 225
Query: 1115 FSQINCSEGYIQTTSV 1162
+S++NCS Y+Q V
Sbjct: 226 WSRVNCSL-YVQVEKV 240
>ref|XP_849687.1| PREDICTED: similar to phosphatidic acid phosphatase type 2A isoform 1
isoform 1 [Canis familiaris].
Length = 215
Score = 91.7 bits (226), Expect = 1e-18
Identities = 44/76 (57%), Positives = 54/76 (71%)
Frame = +2
Query: 923 GEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGRLRPHFLNV 1102
GE +YY S S I+N Y+A +YK +G F G A SQS TDIAK SIGRLRPHFL+V
Sbjct: 4 GEALSVYYNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSIGRLRPHFLDV 63
Query: 1103 WHPDFSQINCSEGYIQ 1150
PD+S+INCS GY++
Sbjct: 64 CDPDWSKINCSVGYVE 79
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,464,513
Number of extensions: 1125222
Number of successful extensions: 5215
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5192
Number of HSP's successfully gapped: 3
Length of query: 391
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 286
Effective length of database: 15,374,224
Effective search space: 4397028064
Effective search space used: 4397028064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012119
(1174 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128019.2| PREDICTED: lipid phosphate phosphohydrolase ... 224 2e-59
Alignment gi|XP_003356494.1| PREDICTED: hypothetical protein LOC100627535... 147 1e-35
Alignment gi|NP_001137195.1| lipid phosphate phosphohydrolase 2 [Sus scro... 113 2e-25
Alignment gi|XP_003133999.2| PREDICTED: lipid phosphate phosphohydrolase ... 91 2e-18
>ref|XP_003128019.2| PREDICTED: lipid phosphate phosphohydrolase 3-like [Sus scrofa].
Length = 294
Score = 224 bits (572), Expect(2) = 2e-59
Identities = 110/132 (83%), Positives = 113/132 (85%)
Frame = +2
Query: 755 AGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFY 934
+GLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETIND TGEFY
Sbjct: 89 SGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDAVLCAVGIVIAILAIITGEFY 148
Query: 935 RIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGRLRPHFLNVWHPD 1114
RIYYLKEKSRSTIQNPYVAALYKQVGCF GCAISQSFTDIAKVSIGRLRPHFL+V +PD
Sbjct: 149 RIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPD 208
Query: 1115 FSQINCSEGYIQ 1150
FSQINCSEGYIQ
Sbjct: 209 FSQINCSEGYIQ 220
Score = 23.5 bits (49), Expect(2) = 2e-59
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1150 NYKCRGED 1173
NYKCRGED
Sbjct: 221 NYKCRGED 228
>ref|XP_003356494.1| PREDICTED: hypothetical protein LOC100627535 [Sus scrofa].
Length = 189
Score = 147 bits (371), Expect = 1e-35
Identities = 79/108 (73%), Positives = 79/108 (73%)
Frame = +3
Query: 123 AENKPRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSWGSARRWLGSAQLPFIKQPAAE 302
AENKPRRS SRSWGSA RWLGSAQLPFIKQPAAE
Sbjct: 85 AENKPRRSQRRRRRRQQQQQQQQQQQQQEEEE---SRSWGSAPRWLGSAQLPFIKQPAAE 141
Query: 303 EGGRAPALPPRCSAHGHASSARPEQRSAAEVSARELTLFPLDFRTIRG 446
EGGRAPALPPRC AHGHASSARPEQRSAAEVSARELTLFPLDFRTIRG
Sbjct: 142 EGGRAPALPPRCFAHGHASSARPEQRSAAEVSARELTLFPLDFRTIRG 189
>ref|NP_001137195.1| lipid phosphate phosphohydrolase 2 [Sus scrofa].
Length = 287
Score = 113 bits (283), Expect = 2e-25
Identities = 64/147 (43%), Positives = 87/147 (59%)
Frame = +2
Query: 710 KRVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXX 889
+R + + LD+ C+ +A LPF I+ T PY RGFYC D++I+YP + +TI
Sbjct: 3 RRWVFVLLDVLCVLVASLPFTIL-TFVNAPYKRGFYCGDDSIRYPYRP-DTITHGLMAGV 60
Query: 890 XXXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVS 1069
GE Y +Y + SRS N Y+AALYK +G F G A+SQS TD+AK
Sbjct: 61 IITATVILVSAGEAYLVYTDRLYSRSDFNN-YLAALYKVLGTFLFGAAVSQSLTDLAKYM 119
Query: 1070 IGRLRPHFLNVWHPDFSQINCSEGYIQ 1150
GRLRP+FL V PD+S++NCS Y+Q
Sbjct: 120 TGRLRPNFLAVCDPDWSRVNCSV-YVQ 145
>ref|XP_003133999.2| PREDICTED: lipid phosphate phosphohydrolase 1-like [Sus scrofa].
Length = 252
Score = 90.5 bits (223), Expect = 2e-18
Identities = 55/146 (37%), Positives = 72/146 (49%)
Frame = +2
Query: 713 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 892
R+ + LD+ C+ +AGLPF I+ TS P+ RG +CNDE+IKYP K +TI
Sbjct: 6 RLPYVALDVLCVLLAGLPFAIL-TSRHTPFQRGLFCNDESIKYPYKE-DTIPYPLLGGII 63
Query: 893 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSI 1072
GE +Y+ TDIAK SI
Sbjct: 64 IPFSIIVMIVGETLSVYFX---------------------------------TDIAKYSI 90
Query: 1073 GRLRPHFLNVWHPDFSQINCSEGYIQ 1150
GRLRPHFL+V PD+S+INCS+GYI+
Sbjct: 91 GRLRPHFLDVCDPDWSKINCSDGYIE 116
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,974,811
Number of extensions: 827504
Number of successful extensions: 3231
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3214
Number of HSP's successfully gapped: 6
Length of query: 391
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,829,335
Effective search space: 2560507150
Effective search space used: 2560507150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012119
(1174 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542122.1| lipid phosphate phosphohydrolase 3 [Mus musculu... 301 8e-82
Alignment gi|NP_032929.1| lipid phosphate phosphohydrolase 1 isoform 2 [M... 128 8e-30
Alignment gi|NP_032273.1| lipid phosphate phosphohydrolase 1 isoform 1 [M... 123 3e-28
Alignment gi|NP_056632.2| lipid phosphate phosphohydrolase 2 [Mus musculu... 121 9e-28
>ref|NP_542122.1| lipid phosphate phosphohydrolase 3 [Mus musculus].
Length = 312
Score = 301 bits (770), Expect(2) = 8e-82
Identities = 148/178 (83%), Positives = 152/178 (85%)
Frame = +2
Query: 617 MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK 796
MQ+YKYDKAIV ESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMA LPF+IIETSTIK
Sbjct: 1 MQSYKYDKAIVPESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAALPFLIIETSTIK 60
Query: 797 PYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ 976
PY RGFYCNDE+IKYPLK ETIND TGEFYRIYYLKEKSRST Q
Sbjct: 61 PYRRGFYCNDESIKYPLKVSETINDAVLCAVGIVIAILAIITGEFYRIYYLKEKSRSTTQ 120
Query: 977 NPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGRLRPHFLNVWHPDFSQINCSEGYIQ 1150
NPYVAALYKQVGCF GCAISQSFTDIAKVSIGRLRPHFL+V PDFSQINCSEGYIQ
Sbjct: 121 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCDPDFSQINCSEGYIQ 178
Score = 22.3 bits (46), Expect(2) = 8e-82
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 1150 NYKCRGED 1173
NY+CRGED
Sbjct: 179 NYRCRGED 186
>ref|NP_032929.1| lipid phosphate phosphohydrolase 1 isoform 2 [Mus musculus].
Length = 283
Score = 128 bits (322), Expect = 8e-30
Identities = 66/146 (45%), Positives = 90/146 (61%)
Frame = +2
Query: 713 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 892
R+ + LD+ C+ +AGLPF I+ TS P+ RG +CND++IKYP K +TI
Sbjct: 6 RLPYVALDVICVLLAGLPFAIL-TSRHTPFQRGIFCNDDSIKYPYKE-DTIPYALLGGIV 63
Query: 893 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSI 1072
GE +Y+ S S + NPY+A +YK VG F G + SQS TDIAK +I
Sbjct: 64 IPFCIIVMSIGESLSVYFNVLHSNSFVGNPYIATIYKAVGAFLFGVSASQSLTDIAKYTI 123
Query: 1073 GRLRPHFLNVWHPDFSQINCSEGYIQ 1150
G LRPHFL + +PD+S+INCS+GYI+
Sbjct: 124 GSLRPHFLAICNPDWSKINCSDGYIE 149
>ref|NP_032273.1| lipid phosphate phosphohydrolase 1 isoform 1 [Mus musculus].
Length = 284
Score = 123 bits (308), Expect = 3e-28
Identities = 59/146 (40%), Positives = 85/146 (58%)
Frame = +2
Query: 713 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 892
R+ + LD+ C+ +A +P I++ + P+ RGF+C D ++KYP TI
Sbjct: 6 RLPYVALDVICVLLAAMPMTILKLGKVYPFQRGFFCTDNSVKYPYHDS-TIPSRILAILG 64
Query: 893 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSI 1072
GE +Y+ S S + NPY+A +YK VG F G + SQS TDIAK +I
Sbjct: 65 LGLPIFSMSIGESLSVYFNVLHSNSFVGNPYIATIYKAVGAFLFGVSASQSLTDIAKYTI 124
Query: 1073 GRLRPHFLNVWHPDFSQINCSEGYIQ 1150
G LRPHFL + +PD+S+INCS+GYI+
Sbjct: 125 GSLRPHFLAICNPDWSKINCSDGYIE 150
>ref|NP_056632.2| lipid phosphate phosphohydrolase 2 [Mus musculus].
Length = 276
Score = 121 bits (304), Expect = 9e-28
Identities = 68/147 (46%), Positives = 89/147 (60%)
Frame = +2
Query: 710 KRVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXX 889
+R + + LD+ C+ +A LPFII+ T PY RGFYC D++I+YP + +TI
Sbjct: 3 RRWVFVLLDVLCVLVASLPFIIL-TLVNAPYKRGFYCGDDSIRYPYRP-DTITHGLMAGV 60
Query: 890 XXXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVS 1069
GE Y +Y + SRS N YVAA+YK +G F G A+SQS TD+AK
Sbjct: 61 IITATVILVSLGEAYLVYTDRLYSRSNFNN-YVAAIYKVLGTFLFGAAVSQSLTDLAKYM 119
Query: 1070 IGRLRPHFLNVWHPDFSQINCSEGYIQ 1150
IGRLRP FL V PD+SQ+NCS GY+Q
Sbjct: 120 IGRLRPSFLAVCDPDWSQVNCS-GYVQ 145
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,062,651
Number of extensions: 903990
Number of successful extensions: 3866
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3857
Number of HSP's successfully gapped: 5
Length of query: 391
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 288
Effective length of database: 12,523,851
Effective search space: 3606869088
Effective search space used: 3606869088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012119
(1174 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003704.3| lipid phosphate phosphohydrolase 3 [Homo sapien... 305 5e-83
Alignment gi|NP_003702.2| lipid phosphate phosphohydrolase 1 isoform 1 [H... 130 2e-30
Alignment gi|NP_795714.1| lipid phosphate phosphohydrolase 1 isoform 2 [H... 123 4e-28
Alignment gi|NP_003703.1| lipid phosphate phosphohydrolase 2 isoform 1 [H... 117 2e-26
Alignment gi|NP_808211.1| lipid phosphate phosphohydrolase 2 isoform 3 [H... 105 1e-22
Alignment gi|NP_803545.1| lipid phosphate phosphohydrolase 2 isoform 2 [H... 78 1e-14
>ref|NP_003704.3| lipid phosphate phosphohydrolase 3 [Homo sapiens].
Length = 311
Score = 305 bits (781), Expect = 5e-83
Identities = 151/178 (84%), Positives = 156/178 (87%)
Frame = +2
Query: 617 MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK 796
MQNYKYDKAIV ESKNGGSPALNNNPR+ GSKRVLLICLDLFCLFMAGLPF+IIETSTIK
Sbjct: 1 MQNYKYDKAIVPESKNGGSPALNNNPRRSGSKRVLLICLDLFCLFMAGLPFLIIETSTIK 60
Query: 797 PYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ 976
PYHRGFYCNDE+IKYPLKTGETIND TGEFYRIYYLK KSRSTIQ
Sbjct: 61 PYHRGFYCNDESIKYPLKTGETINDAVLCAVGIVIAILAIITGEFYRIYYLK-KSRSTIQ 119
Query: 977 NPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGRLRPHFLNVWHPDFSQINCSEGYIQ 1150
NPYVAALYKQVGCF GCAISQSFTDIAKVSIGRLRPHFL+V +PDFSQINCSEGYIQ
Sbjct: 120 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQ 177
>ref|NP_003702.2| lipid phosphate phosphohydrolase 1 isoform 1 [Homo sapiens].
Length = 284
Score = 130 bits (327), Expect = 2e-30
Identities = 70/146 (47%), Positives = 90/146 (61%)
Frame = +2
Query: 713 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 892
R+ + LD+ C+ +AGLPF I+ TS P+ RG +CNDE+IKYP K +TI
Sbjct: 6 RLPYVALDVLCVLLAGLPFAIL-TSRHTPFQRGVFCNDESIKYPYKE-DTIPYALLGGII 63
Query: 893 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSI 1072
GE +Y S S I+N Y+A +YK +G F G A SQS TDIAK SI
Sbjct: 64 IPFSIIVIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSI 123
Query: 1073 GRLRPHFLNVWHPDFSQINCSEGYIQ 1150
GRLRPHFL+V PD+S+INCS+GYI+
Sbjct: 124 GRLRPHFLDVCDPDWSKINCSDGYIE 149
>ref|NP_795714.1| lipid phosphate phosphohydrolase 1 isoform 2 [Homo sapiens].
Length = 285
Score = 123 bits (308), Expect = 4e-28
Identities = 61/146 (41%), Positives = 84/146 (57%)
Frame = +2
Query: 713 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 892
R+ + LD+ C+ +A +P +++ I P+ RGF+C D +I YP T+
Sbjct: 6 RLPYVALDVLCVLLASMPMAVLKLGQIYPFQRGFFCKDNSINYPYHDS-TVTSTVLILVG 64
Query: 893 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSI 1072
GE +Y S S I+N Y+A +YK +G F G A SQS TDIAK SI
Sbjct: 65 VGLPISSIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSI 124
Query: 1073 GRLRPHFLNVWHPDFSQINCSEGYIQ 1150
GRLRPHFL+V PD+S+INCS+GYI+
Sbjct: 125 GRLRPHFLDVCDPDWSKINCSDGYIE 150
>ref|NP_003703.1| lipid phosphate phosphohydrolase 2 isoform 1 [Homo sapiens].
Length = 288
Score = 117 bits (293), Expect = 2e-26
Identities = 67/151 (44%), Positives = 89/151 (58%)
Frame = +2
Query: 710 KRVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXX 889
+R + + LD+ CL +A LPF I+ T PY RGFYC D++I+YP + +TI
Sbjct: 3 RRWVFVLLDVLCLLVASLPFAIL-TLVNAPYKRGFYCGDDSIRYPYRP-DTITHGLMAGV 60
Query: 890 XXXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVS 1069
GE Y +Y + SRS N YVAA+YK +G F G A+SQS TD+AK
Sbjct: 61 TITATVILVSAGEAYLVYTDRLYSRSDFNN-YVAAVYKVLGTFLFGAAVSQSLTDLAKYM 119
Query: 1070 IGRLRPHFLNVWHPDFSQINCSEGYIQTTSV 1162
IGRLRP+FL V PD+S++NCS Y+Q V
Sbjct: 120 IGRLRPNFLAVCDPDWSRVNCSV-YVQLEKV 149
>ref|NP_808211.1| lipid phosphate phosphohydrolase 2 isoform 3 [Homo sapiens].
Length = 309
Score = 105 bits (261), Expect = 1e-22
Identities = 62/136 (45%), Positives = 79/136 (58%)
Frame = +2
Query: 755 AGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFY 934
A LPF I+ T PY RGFYC D++I+YP + +TI GE Y
Sbjct: 39 ASLPFAIL-TLVNAPYKRGFYCGDDSIRYPYRP-DTITHGLMAGVTITATVILVSAGEAY 96
Query: 935 RIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGRLRPHFLNVWHPD 1114
+Y + SRS N YVAA+YK +G F G A+SQS TD+AK IGRLRP+FL V PD
Sbjct: 97 LVYTDRLYSRSDFNN-YVAAVYKVLGTFLFGAAVSQSLTDLAKYMIGRLRPNFLAVCDPD 155
Query: 1115 FSQINCSEGYIQTTSV 1162
+S++NCS Y+Q V
Sbjct: 156 WSRVNCSV-YVQLEKV 170
>ref|NP_803545.1| lipid phosphate phosphohydrolase 2 isoform 2 [Homo sapiens].
Length = 232
Score = 78.2 bits (191), Expect = 1e-14
Identities = 43/80 (53%), Positives = 54/80 (67%)
Frame = +2
Query: 923 GEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFPLGCAISQSFTDIAKVSIGRLRPHFLNV 1102
GE Y +Y + SRS N YVAA+YK +G F G A+SQS TD+AK IGRLRP+FL V
Sbjct: 16 GEAYLVYTDRLYSRSDFNN-YVAAVYKVLGTFLFGAAVSQSLTDLAKYMIGRLRPNFLAV 74
Query: 1103 WHPDFSQINCSEGYIQTTSV 1162
PD+S++NCS Y+Q V
Sbjct: 75 CDPDWSRVNCSV-YVQLEKV 93
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,490,256
Number of extensions: 1083254
Number of successful extensions: 4669
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4638
Number of HSP's successfully gapped: 6
Length of query: 391
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 286
Effective length of database: 14,835,944
Effective search space: 4243079984
Effective search space used: 4243079984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012119
(1174 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1053 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1053 bits (531), Expect = 0.0
Identities = 537/539 (99%)
Strand = Plus / Plus
Query: 217 aggaggaggaaagtaggagttggggcagcgctcggaggtggctgggctccgcgcagctcc 276
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 143642325 aggaggaggaaagtaggagttggggcagcgctccgaggtggctgggctccgcgcagctcc 143642384
Query: 277 cattcattaagcaaccagctgcggaggaaggtggccgagcgcccgcgctgccccctcgct 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642385 cattcattaagcaaccagctgcggaggaaggtggccgagcgcccgcgctgccccctcgct 143642444
Query: 337 gctctgcgcacggacacgccagctccgcgcgtccggagcaacgcagcgctgcagaagttt 396
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642445 gctttgcgcacggacacgccagctccgcgcgtccggagcaacgcagcgctgcagaagttt 143642504
Query: 397 ctgctcgggagttgactctcttccccttggactttcgaacgattcggggttgagacagga 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642505 ctgctcgggagttgactctcttccccttggactttcgaacgattcggggttgagacagga 143642564
Query: 457 aaagcggaggagcaccagggagcagaaagcaccaccgcctgcccttggaagcggggcagc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642565 aaagcggaggagcaccagggagcagaaagcaccaccgcctgcccttggaagcggggcagc 143642624
Query: 517 ggggccgcactctcccgccgcgccccgagaagcctcggtcgggaggcgaccccggcgtct 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642625 ggggccgcactctcccgccgcgccccgagaagcctcggtcgggaggcgaccccggcgtct 143642684
Query: 577 gggtgtgtggctgcagtcgtggggcgtcttggccagcgccatgcaaaactacaagtacga 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642685 gggtgtgtggctgcagtcgtggggcgtcttggccagcgccatgcaaaactacaagtacga 143642744
Query: 637 caaggctatcgtcgcggagagcaagaacggcggcagcccggcgctcaataacaacccgag 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642745 caaggctatcgtcgcggagagcaagaacggcggcagcccggcgctcaataacaacccgag 143642804
Query: 697 gaagggcggcagcaagcgggtgctgctcatctgcctggacctcttctgcctcttcatgg 755
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642805 gaagggcggcagcaagcgggtgctgctcatctgcctggacctcttctgcctcttcatgg 143642863
Score = 442 bits (223), Expect = e-121
Identities = 254/263 (96%), Gaps = 1/263 (0%)
Strand = Plus / Plus
Query: 913 gatcatcacgggggaattctaccgcatctattacctgaaggagaagtcccggtcgacaat 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143706338 gatcatcacgggggaattctaccgcatctattacctgaaggagaagtcccggtcgacaat 143706397
Query: 973 ccagaatccctatgtggcagccctctataagcaagtgggctgcttccctctcggctgtgc 1032
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 143706398 ccagaatccctatgtggcagccctctataagcaagtgggctgcttcctcttcggctgtgc 143706457
Query: 1033 catcagccagtccttcacggacattgcaaaggtctccatagggcgcctgcgtcctcactt 1092
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 143706458 catcagccagtccttcacggacattgccaaggtctccatagggcgcctgcgtcctcactt 143706517
Query: 1093 cttgaacgtctggcaccccgatttcagccaaatcaactgctccgaaggctacatcc-aaa 1151
||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 143706518 cttgagcgtctgcaaccccgatttcagccagatcaactgctccgaaggctacatccaaaa 143706577
Query: 1152 ctacaagtgtagaggcgaggaca 1174
|||||||||||||||||||||||
Sbjct: 143706578 ctacaagtgtagaggcgaggaca 143706600
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 755 gcgggcctgcccttcatcatcatcgagacaagcaccatcaagccttaccaccggggtttt 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143689202 gcgggcctgcccttcatcatcatcgagacaagcaccatcaagccttaccaccggggtttt 143689261
Query: 815 tattgcaatgacgagaccatcaagtacccgctgaaaaccggggagacaatcaatgatgct 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143689262 tattgcaatgacgagaccatcaagtacccgctgaaaaccggggagacaatcaatgatgct 143689321
Query: 875 gtgctctgcgctgtgggcattgtgatcgccatcctcgcg 913
|||||||||||||||||||||||||||||||||||||||
Sbjct: 143689322 gtgctctgcgctgtgggcattgtgatcgccatcctcgcg 143689360
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 1 ttatcctacgtcttaggctgcttaaggaaggggctgtgctttcggaatcccttctgagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642118 ttatcctacgtcttaggctgcttaaggaaggggctgtgctttcggaatcccttctgagcc 143642177
Query: 61 aagtaaggaggtccctctctttgcctctctctcttttttaaaggacctcatgaaataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642178 aagtaaggaggtccctctctttgcctctctctcttttttaaaggacctcatgaaataaaa 143642237
Query: 121 gtgccgaaaacaaacccaggcgatca 146
||||||||||||||||||||||||||
Sbjct: 143642238 gtgccgaaaacaaacccaggcgatca 143642263
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,681,126
Number of extensions: 416
Number of successful extensions: 416
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 4
Length of query: 1174
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1153
Effective length of database: 2,808,413,156
Effective search space: 3238100368868
Effective search space used: 3238100368868
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)