Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012122
(1158 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069941.1| lipid phosphate phosphohydrolase 3 [Bos taur... 373 e-103
Alignment gi|NP_001073798.1| lipid phosphate phosphohydrolase 1 [Bos taur... 175 6e-44
Alignment gi|NP_001039355.1| lipid phosphate phosphohydrolase 2 [Bos taur... 147 2e-35
Alignment gi|XP_002688955.1| PREDICTED: phosphatidic acid phosphatase typ... 140 3e-33
Alignment gi|XP_001789251.2| PREDICTED: phosphatidic acid phosphatase typ... 140 3e-33
Alignment gi|NP_001179332.1| lipid phosphate phosphatase-related protein ... 62 1e-09
Alignment gi|XP_002689915.1| PREDICTED: lipid phosphate phosphatase-relat... 62 1e-09
>ref|NP_001069941.1| lipid phosphate phosphohydrolase 3 [Bos taurus].
Length = 311
Score = 373 bits (957), Expect = e-103
Identities = 182/204 (89%), Positives = 185/204 (90%)
Frame = +2
Query: 503 MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK 682
MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK
Sbjct: 1 MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK 60
Query: 683 PYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ 862
PYHRGFYCNDE+IKYP KTGETIND TGEFYRIYYLKEKSRSTIQ
Sbjct: 61 PYHRGFYCNDESIKYPQKTGETINDAVLTAVGIVIAILAIITGEFYRIYYLKEKSRSTIQ 120
Query: 863 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQNY 1042
NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFL+VCNPDFSQINCS GYIQNY
Sbjct: 121 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLNVCNPDFSQINCSVGYIQNY 180
Query: 1043 KCRGEDSKVQEARKSFFSGHASSS 1114
+CRGEDSKVQEARKSFFSGHAS S
Sbjct: 181 RCRGEDSKVQEARKSFFSGHASFS 204
>ref|NP_001073798.1| lipid phosphate phosphohydrolase 1 [Bos taurus].
Length = 285
Score = 175 bits (444), Expect = 6e-44
Identities = 89/172 (51%), Positives = 113/172 (65%)
Frame = +2
Query: 599 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 778
R+ + LD+ C+ +AGLPF I+ TS P+ RG +CNDE+IKYP K +TI
Sbjct: 6 RLPYVALDVLCVLLAGLPFAIL-TSRHTPFQRGLFCNDESIKYPYKE-DTIPYPLLGGII 63
Query: 779 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSI 958
GE +Y+ S S I+N Y+A +YK +G FLFG A SQS TDIAK SI
Sbjct: 64 IPFSIIVMIVGETLSVYFSLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSI 123
Query: 959 GRLRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHASSS 1114
GRLRPHFL VC+PD+S+INCS+GYI+NY CRG KV+E R SF+SGH+S S
Sbjct: 124 GRLRPHFLDVCDPDWSKINCSDGYIENYICRGNAQKVKEGRLSFYSGHSSFS 175
>ref|NP_001039355.1| lipid phosphate phosphohydrolase 2 [Bos taurus].
Length = 287
Score = 147 bits (371), Expect = 2e-35
Identities = 79/171 (46%), Positives = 107/171 (62%)
Frame = +2
Query: 596 KRVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXX 775
+R + + LD+ C+ +A LP I+ T PY RGFYC D++I+YP + +TI
Sbjct: 3 RRWVFVLLDVLCVLVAALPCAIL-TFVNTPYKRGFYCGDDSIRYPYRP-DTITHGLMAGV 60
Query: 776 XXXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVS 955
GE Y +Y + SRS N Y+AALYK VG FLFG A+SQS TD+AK
Sbjct: 61 IITATVILVSAGEAYLVYTDRLYSRSDFNN-YLAALYKVVGTFLFGAAVSQSLTDLAKYM 119
Query: 956 IGRLRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHAS 1108
GRLRP+FL+VC+PD+S++NCS Y+Q CRG + V E+R SF+SGH+S
Sbjct: 120 TGRLRPNFLAVCDPDWSRVNCS-AYVQVEVCRGSSANVTESRLSFYSGHSS 169
>ref|XP_002688955.1| PREDICTED: phosphatidic acid phosphatase type 2B-like [Bos taurus].
Length = 427
Score = 140 bits (352), Expect = 3e-33
Identities = 69/168 (41%), Positives = 96/168 (57%)
Frame = +2
Query: 605 LLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXXXX 784
LL+ LDL CL + LP ++ ET ++P+ +GF+CND TI+YP I D
Sbjct: 150 LLVALDLICLMLVSLPIVLSETGLLEPHIQGFFCNDTTIQYPRMAHYIIEDSALIKMGFF 209
Query: 785 XXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGR 964
GE R+ L+ S + + + Y+A +YKQ+ F+FG S S T IAK++ G+
Sbjct: 210 ISIFTISLGELIRVRGLQLSSPAFMSSAYMAMIYKQLRAFIFGGLASFSLTSIAKMTTGQ 269
Query: 965 LRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHAS 1108
LRPHFL+ C PD + NC GYI NY C G V +AR SF+S +AS
Sbjct: 270 LRPHFLATCLPDPTSFNCENGYITNYSCTGHPEDVLDARMSFYSENAS 317
>ref|XP_001789251.2| PREDICTED: phosphatidic acid phosphatase type 2B-like [Bos taurus].
Length = 427
Score = 140 bits (352), Expect = 3e-33
Identities = 69/168 (41%), Positives = 96/168 (57%)
Frame = +2
Query: 605 LLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXXXX 784
LL+ LDL CL + LP ++ ET ++P+ +GF+CND TI+YP I D
Sbjct: 150 LLVALDLICLMLVSLPIVLSETGLLEPHIQGFFCNDTTIQYPRMAHYIIEDSALIKMGFF 209
Query: 785 XXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGR 964
GE R+ L+ S + + + Y+A +YKQ+ F+FG S S T IAK++ G+
Sbjct: 210 ISIFTISLGELIRVRGLQLSSPAFMSSAYMAMIYKQLRAFIFGGLASFSLTSIAKMTTGQ 269
Query: 965 LRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHAS 1108
LRPHFL+ C PD + NC GYI NY C G V +AR SF+S +AS
Sbjct: 270 LRPHFLATCLPDPTSFNCENGYITNYSCTGHPEDVLDARMSFYSENAS 317
>ref|NP_001179332.1| lipid phosphate phosphatase-related protein type 1 [Bos taurus].
Length = 325
Score = 62.0 bits (149), Expect = 1e-09
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Frame = +2
Query: 563 ALNNNPRKGGSKRVLLICLDLFCLFMAG---LPFIIIETSTIKPYHRGFYCNDETIKYPL 733
A+ NN ++ S I ++L + MAG L + T T + + +GF+C D + P
Sbjct: 2 AVGNNTQRSYSIIPCFIFVEL--VIMAGTVLLAYYFECTDTFQVHIQGFFCQDGDLMKPY 59
Query: 734 KTGET---INDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ-------------N 865
E I GE +Y++K S I N
Sbjct: 60 PGTEEESFITPLLLYCVLAATPTAIIFIGEI-SMYFIKSTRESLIAQEKTILTGECCYLN 118
Query: 866 PYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINC--SEGYIQN 1039
P + + + +G F FG + F + +V G L P+FL+VC P+++ +C +I N
Sbjct: 119 PLLRRIIRFIGVFAFGLFATDIFVNAGQVVTGHLTPYFLTVCKPNYTSTDCRAHHQFINN 178
Query: 1040 YK-CRGEDSKVQEARKSFFSGHASSS 1114
C G+ +++AR+SF S HA+ S
Sbjct: 179 GNICTGDLEVIEKARRSFPSKHAALS 204
>ref|XP_002689915.1| PREDICTED: lipid phosphate phosphatase-related protein type 1-like
[Bos taurus].
Length = 325
Score = 62.0 bits (149), Expect = 1e-09
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Frame = +2
Query: 563 ALNNNPRKGGSKRVLLICLDLFCLFMAG---LPFIIIETSTIKPYHRGFYCNDETIKYPL 733
A+ NN ++ S I ++L + MAG L + T T + + +GF+C D + P
Sbjct: 2 AVGNNTQRSYSIIPCFIFVEL--VIMAGTVLLAYYFECTDTFQVHIQGFFCQDGDLMKPY 59
Query: 734 KTGET---INDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ-------------N 865
E I GE +Y++K S I N
Sbjct: 60 PGTEEESFITPLLLYCVLAATPTAIIFIGEI-SMYFIKSTRESLIAQEKTILTGECCYLN 118
Query: 866 PYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINC--SEGYIQN 1039
P + + + +G F FG + F + +V G L P+FL+VC P+++ +C +I N
Sbjct: 119 PLLRRIIRFIGVFAFGLFATDIFVNAGQVVTGHLTPYFLTVCKPNYTSTDCRAHHQFINN 178
Query: 1040 YK-CRGEDSKVQEARKSFFSGHASSS 1114
C G+ +++AR+SF S HA+ S
Sbjct: 179 GNICTGDLEVIEKARRSFPSKHAALS 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,815,178
Number of extensions: 1115836
Number of successful extensions: 4971
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4938
Number of HSP's successfully gapped: 7
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012122
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012122
(1158 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536696.2| PREDICTED: similar to phosphatidic acid phospha... 368 e-102
Alignment gi|XP_855263.1| PREDICTED: similar to phosphatidic acid phospha... 135 6e-32
Alignment gi|XP_849687.1| PREDICTED: similar to phosphatidic acid phospha... 132 8e-31
Alignment gi|XP_538755.2| PREDICTED: similar to plasticity related gene 3... 63 6e-10
Alignment gi|XP_867229.1| PREDICTED: similar to plasticity related gene 3... 60 5e-09
Alignment gi|XP_547267.2| PREDICTED: similar to plasticity related gene 1... 53 5e-07
Alignment gi|XP_867252.1| PREDICTED: similar to plasticity related gene 3... 53 6e-07
Alignment gi|XP_537060.2| PREDICTED: similar to plasticity-related protei... 52 8e-07
>ref|XP_536696.2| PREDICTED: similar to phosphatidic acid phosphatase type 2B [Canis
familiaris].
Length = 312
Score = 368 bits (944), Expect = e-102
Identities = 178/204 (87%), Positives = 183/204 (89%)
Frame = +2
Query: 503 MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK 682
MQNYKYDKAI ESK GGSPALNNNPRKGGSKR+LLICLDLFCLFMAGLPF+IIETSTIK
Sbjct: 1 MQNYKYDKAIAPESKTGGSPALNNNPRKGGSKRMLLICLDLFCLFMAGLPFLIIETSTIK 60
Query: 683 PYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ 862
PYHRGFYCNDE+IKYPLK GETIND TGEFYRIYYLKEKSRSTIQ
Sbjct: 61 PYHRGFYCNDESIKYPLKIGETINDAVLCAVGIVIAILAIITGEFYRIYYLKEKSRSTIQ 120
Query: 863 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQNY 1042
NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFL+VCNPDFSQINCSEGYIQNY
Sbjct: 121 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLNVCNPDFSQINCSEGYIQNY 180
Query: 1043 KCRGEDSKVQEARKSFFSGHASSS 1114
KCRG+DSKVQEARKSFFSGHAS S
Sbjct: 181 KCRGDDSKVQEARKSFFSGHASFS 204
>ref|XP_855263.1| PREDICTED: similar to phosphatidic acid phosphatase type 2C isoform 3
[Canis familiaris].
Length = 379
Score = 135 bits (341), Expect = 6e-32
Identities = 77/157 (49%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Frame = +2
Query: 641 AGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFY 820
A LPF I+ T PY RGFYC D++I+YP + +TI GE Y
Sbjct: 109 ASLPFAIL-TLVNAPYKRGFYCADDSIRYPYRP-DTITHGLMAGVTITATVVLVSAGEAY 166
Query: 821 RIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPD 1000
+Y + SRS N YVAA+YK +G FLFG A+SQS TD+AK IGRLRP+FL+VC+PD
Sbjct: 167 LVYTDRLYSRSDFNN-YVAAVYKVLGTFLFGAAVSQSLTDLAKYMIGRLRPNFLAVCDPD 225
Query: 1001 FSQINCSEGYIQNYK-CRGEDSKVQEARKSFFSGHAS 1108
+S++NCS Y+Q K CRG + V E+R SF+SGH+S
Sbjct: 226 WSRVNCSL-YVQVEKVCRGSPANVTESRLSFYSGHSS 261
>ref|XP_849687.1| PREDICTED: similar to phosphatidic acid phosphatase type 2A isoform 1
isoform 1 [Canis familiaris].
Length = 215
Score = 132 bits (331), Expect = 8e-31
Identities = 62/102 (60%), Positives = 76/102 (74%)
Frame = +2
Query: 809 GEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSV 988
GE +YY S S I+N Y+A +YK +G FLFG A SQS TDIAK SIGRLRPHFL V
Sbjct: 4 GEALSVYYNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSIGRLRPHFLDV 63
Query: 989 CNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHASSS 1114
C+PD+S+INCS GY++NY C+G KV+E R SF+SGH+S S
Sbjct: 64 CDPDWSKINCSVGYVENYICQGNAQKVREGRLSFYSGHSSFS 105
>ref|XP_538755.2| PREDICTED: similar to plasticity related gene 3 isoform 1 [Canis
familiaris].
Length = 325
Score = 62.8 bits (151), Expect = 6e-10
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Frame = +2
Query: 563 ALNNNPRKGGSKRVLLICLDLFCLFMAG---LPFIIIETSTIKPYHRGFYCNDETIKYPL 733
A+ NN ++ S I ++L + MAG L + T T + + +GF+C D + P
Sbjct: 2 AVGNNTQRSHSIIPCFIFVEL--VIMAGTVLLAYYFECTDTFQVHIQGFFCQDGDLMKPY 59
Query: 734 KTGET---INDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ-------------N 865
E I GE +Y++K S I N
Sbjct: 60 PGTEEESFITPLVLYCVLAATPTAIIFIGEI-SMYFIKSTRESLIAQEKTILTGECCYLN 118
Query: 866 PYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINC--SEGYIQN 1039
P + + + +G F FG + F + +V G L P+FL+VC P+++ +C +I N
Sbjct: 119 PLLRRIIRFIGVFAFGLFATDIFVNAGQVVTGHLTPYFLTVCKPNYTSTDCRAHHQFINN 178
Query: 1040 YK-CRGEDSKVQEARKSFFSGHASSS 1114
C G+ +++AR+SF S HA+ S
Sbjct: 179 GNICTGDMEVIEKARRSFPSKHAALS 204
>ref|XP_867229.1| PREDICTED: similar to plasticity related gene 3 isoform 2 [Canis
familiaris].
Length = 309
Score = 59.7 bits (143), Expect = 5e-09
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Frame = +2
Query: 668 TSTIKPYHRGFYCNDETIKYPLKTGET---INDXXXXXXXXXXXXXXXXTGEFYRIYYLK 838
T T + + +GF+C D + P E I GE +Y++K
Sbjct: 22 TDTFQVHIQGFFCQDGDLMKPYPGTEEESFITPLVLYCVLAATPTAIIFIGEI-SMYFIK 80
Query: 839 EKSRSTIQ-------------NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHF 979
S I NP + + + +G F FG + F + +V G L P+F
Sbjct: 81 STRESLIAQEKTILTGECCYLNPLLRRIIRFIGVFAFGLFATDIFVNAGQVVTGHLTPYF 140
Query: 980 LSVCNPDFSQINC--SEGYIQNYK-CRGEDSKVQEARKSFFSGHASSS 1114
L+VC P+++ +C +I N C G+ +++AR+SF S HA+ S
Sbjct: 141 LTVCKPNYTSTDCRAHHQFINNGNICTGDMEVIEKARRSFPSKHAALS 188
>ref|XP_547267.2| PREDICTED: similar to plasticity related gene 1 [Canis familiaris].
Length = 714
Score = 53.1 bits (126), Expect = 5e-07
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +2
Query: 863 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCS---EGYI 1033
N ++ + VG +FG + TDI ++S G P+FL+VC P+++ +N S YI
Sbjct: 120 NSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFLTVCKPNYTSLNVSCKENSYI 179
Query: 1034 QNYKCRGED-SKVQEARKSFFSGHAS 1108
C G D + + RKSF S HA+
Sbjct: 180 VEDICSGSDLTVINSGRKSFPSQHAT 205
>ref|XP_867252.1| PREDICTED: similar to plasticity related gene 3 isoform 4 [Canis
familiaris].
Length = 333
Score = 52.8 bits (125), Expect = 6e-07
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 26/175 (14%)
Frame = +2
Query: 668 TSTIKPYHRGFYCNDETIKYPLKTGET---INDXXXXXXXXXXXXXXXXTGEFYRIYYLK 838
T T + + +GF+C D + P E I GE +Y++K
Sbjct: 14 TDTFQVHIQGFFCQDGDLMKPYPGTEEESFITPLVLYCVLAATPTAIIFIGEI-SMYFIK 72
Query: 839 EKSRSTIQ-------------NPYVAALYKQVG-------CFLFGCAISQSFTDIAKVSI 958
S I NP + + + +G F FG + F + +V
Sbjct: 73 STRESLIAQEKTILTGECCYLNPLLRRIIRFIGDLEETMRVFAFGLFATDIFVNAGQVVT 132
Query: 959 GRLRPHFLSVCNPDFSQINC--SEGYIQNYK-CRGEDSKVQEARKSFFSGHASSS 1114
G L P+FL+VC P+++ +C +I N C G+ +++AR+SF S HA+ S
Sbjct: 133 GHLTPYFLTVCKPNYTSTDCRAHHQFINNGNICTGDMEVIEKARRSFPSKHAALS 187
>ref|XP_537060.2| PREDICTED: similar to plasticity-related protein 3 [Canis
familiaris].
Length = 252
Score = 52.4 bits (124), Expect = 8e-07
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +2
Query: 863 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQ-- 1036
NP V + +G + FG + F + +V G L PHFL++C P+++ + C + Y Q
Sbjct: 44 NPLVRRTVRFLGIYTFGLFATDIFVNAGQVVTGNLAPHFLALCKPNYTALGCQQ-YTQFI 102
Query: 1037 --NYKCRGEDSKVQEARKSFFSGHASSS 1114
C G + ARK+F S A+ S
Sbjct: 103 SGEEACTGNPDLIMRARKTFPSKEAALS 130
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,208,216
Number of extensions: 1082921
Number of successful extensions: 5507
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5478
Number of HSP's successfully gapped: 8
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012122
(1158 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128019.2| PREDICTED: lipid phosphate phosphohydrolase ... 287 9e-78
Alignment gi|XP_003356494.1| PREDICTED: hypothetical protein LOC100627535... 151 8e-37
Alignment gi|NP_001137195.1| lipid phosphate phosphohydrolase 2 [Sus scro... 147 8e-36
Alignment gi|XP_003133999.2| PREDICTED: lipid phosphate phosphohydrolase ... 127 1e-29
Alignment gi|XP_001928256.1| PREDICTED: lipid phosphate phosphatase-relat... 62 6e-10
Alignment gi|XP_003353643.1| PREDICTED: lipid phosphate phosphatase-relat... 59 4e-09
Alignment gi|XP_003355334.1| PREDICTED: lipid phosphate phosphatase-relat... 53 3e-07
Alignment gi|XP_003125945.2| PREDICTED: lipid phosphate phosphatase-relat... 52 5e-07
>ref|XP_003128019.2| PREDICTED: lipid phosphate phosphohydrolase 3-like [Sus scrofa].
Length = 294
Score = 287 bits (734), Expect = 9e-78
Identities = 140/158 (88%), Positives = 141/158 (89%)
Frame = +2
Query: 641 AGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFY 820
+GLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETIND TGEFY
Sbjct: 89 SGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDAVLCAVGIVIAILAIITGEFY 148
Query: 821 RIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPD 1000
RIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPD
Sbjct: 149 RIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPD 208
Query: 1001 FSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHASSS 1114
FSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHAS S
Sbjct: 209 FSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHASFS 246
>ref|XP_003356494.1| PREDICTED: hypothetical protein LOC100627535 [Sus scrofa].
Length = 189
Score = 151 bits (381), Expect = 8e-37
Identities = 72/73 (98%), Positives = 73/73 (100%)
Frame = +3
Query: 114 SRSWGSAPRWLGSAQLPFIKQPAAEEGGRAPALPPRCFAHGHASSARPKQRSAAEVSARE 293
SRSWGSAPRWLGSAQLPFIKQPAAEEGGRAPALPPRCFAHGHASSARP+QRSAAEVSARE
Sbjct: 117 SRSWGSAPRWLGSAQLPFIKQPAAEEGGRAPALPPRCFAHGHASSARPEQRSAAEVSARE 176
Query: 294 LTLFPLDFRTIRG 332
LTLFPLDFRTIRG
Sbjct: 177 LTLFPLDFRTIRG 189
>ref|NP_001137195.1| lipid phosphate phosphohydrolase 2 [Sus scrofa].
Length = 287
Score = 147 bits (372), Expect = 8e-36
Identities = 79/171 (46%), Positives = 108/171 (63%)
Frame = +2
Query: 596 KRVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXX 775
+R + + LD+ C+ +A LPF I+ T PY RGFYC D++I+YP + +TI
Sbjct: 3 RRWVFVLLDVLCVLVASLPFTIL-TFVNAPYKRGFYCGDDSIRYPYRP-DTITHGLMAGV 60
Query: 776 XXXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVS 955
GE Y +Y + SRS N Y+AALYK +G FLFG A+SQS TD+AK
Sbjct: 61 IITATVILVSAGEAYLVYTDRLYSRSDFNN-YLAALYKVLGTFLFGAAVSQSLTDLAKYM 119
Query: 956 IGRLRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHAS 1108
GRLRP+FL+VC+PD+S++NCS Y+Q CRG + V E+R SF+SGH+S
Sbjct: 120 TGRLRPNFLAVCDPDWSRVNCSV-YVQVDVCRGSPANVTESRLSFYSGHSS 169
>ref|XP_003133999.2| PREDICTED: lipid phosphate phosphohydrolase 1-like [Sus scrofa].
Length = 252
Score = 127 bits (319), Expect = 1e-29
Identities = 72/172 (41%), Positives = 92/172 (53%)
Frame = +2
Query: 599 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 778
R+ + LD+ C+ +AGLPF I+ TS P+ RG +CNDE+IKYP K +TI
Sbjct: 6 RLPYVALDVLCVLLAGLPFAIL-TSRHTPFQRGLFCNDESIKYPYKE-DTIPYPLLGGII 63
Query: 779 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSI 958
GE +Y+ TDIAK SI
Sbjct: 64 IPFSIIVMIVGETLSVYFX---------------------------------TDIAKYSI 90
Query: 959 GRLRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHASSS 1114
GRLRPHFL VC+PD+S+INCS+GYI+NY CRG KV+E R SF+SGH+S S
Sbjct: 91 GRLRPHFLDVCDPDWSKINCSDGYIENYICRGNAQKVKEGRLSFYSGHSSFS 142
>ref|XP_001928256.1| PREDICTED: lipid phosphate phosphatase-related protein type 1-like
isoform 1 [Sus scrofa].
Length = 325
Score = 62.0 bits (149), Expect = 6e-10
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Frame = +2
Query: 563 ALNNNPRKGGSKRVLLICLDLFCLFMAG---LPFIIIETSTIKPYHRGFYCNDETIKYPL 733
A+ NN ++ S I ++L + MAG L + T T + + +GF+C D + P
Sbjct: 2 AVGNNTQRSYSIIPCFIFVEL--VIMAGTVLLAYYFECTDTFQVHIQGFFCQDGDLMKPY 59
Query: 734 KTGET---INDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ-------------N 865
E I GE +Y++K S I N
Sbjct: 60 PGTEEESFITPLVLYCVLAATPTAIIFIGEI-SMYFIKSTRESLIAQEKTILTGECCYLN 118
Query: 866 PYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINC--SEGYIQN 1039
P + + + +G F FG + F + +V G L P+FL+VC P+++ +C +I N
Sbjct: 119 PLLRRIIRFIGVFAFGLFATDIFVNAGQVVTGHLTPYFLTVCKPNYTSADCRAHHQFINN 178
Query: 1040 YK-CRGEDSKVQEARKSFFSGHASSS 1114
C G+ +++AR+SF S HA+ S
Sbjct: 179 GNICTGDLEVIEKARRSFPSKHAALS 204
>ref|XP_003353643.1| PREDICTED: lipid phosphate phosphatase-related protein type 1-like
isoform 2 [Sus scrofa].
Length = 301
Score = 59.3 bits (142), Expect = 4e-09
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Frame = +2
Query: 668 TSTIKPYHRGFYCNDETIKYPLKTGET---INDXXXXXXXXXXXXXXXXTGEFYRIYYLK 838
T T + + +GF+C D + P E I GE +Y++K
Sbjct: 14 TDTFQVHIQGFFCQDGDLMKPYPGTEEESFITPLVLYCVLAATPTAIIFIGEI-SMYFIK 72
Query: 839 EKSRSTIQ-------------NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHF 979
S I NP + + + +G F FG + F + +V G L P+F
Sbjct: 73 STRESLIAQEKTILTGECCYLNPLLRRIIRFIGVFAFGLFATDIFVNAGQVVTGHLTPYF 132
Query: 980 LSVCNPDFSQINC--SEGYIQNYK-CRGEDSKVQEARKSFFSGHASSS 1114
L+VC P+++ +C +I N C G+ +++AR+SF S HA+ S
Sbjct: 133 LTVCKPNYTSADCRAHHQFINNGNICTGDLEVIEKARRSFPSKHAALS 180
>ref|XP_003355334.1| PREDICTED: lipid phosphate phosphatase-related protein type 4-like
[Sus scrofa].
Length = 639
Score = 53.1 bits (126), Expect = 3e-07
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +2
Query: 863 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCS---EGYI 1033
N ++ + VG +FG + TDI ++S G P+FL+VC P+++ +N S YI
Sbjct: 45 NSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFLTVCKPNYTSLNVSCKENSYI 104
Query: 1034 QNYKCRGED-SKVQEARKSFFSGHAS 1108
C G D + + RKSF S HA+
Sbjct: 105 VEDICSGSDLTVINSGRKSFPSQHAT 130
>ref|XP_003125945.2| PREDICTED: lipid phosphate phosphatase-related protein type 5-like
[Sus scrofa].
Length = 256
Score = 52.4 bits (124), Expect = 5e-07
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +2
Query: 863 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQ-- 1036
NP V + +G + FG + F + +V G L PHFL++C P+++ + C + Y Q
Sbjct: 53 NPLVRRTVRFLGIYTFGLFATDIFVNAGQVVTGNLAPHFLALCKPNYTALGCQQ-YTQFI 111
Query: 1037 --NYKCRGEDSKVQEARKSFFSGHASSS 1114
C G + ARK+F S A+ S
Sbjct: 112 SGEEACTGNPDLIMRARKTFPSKEAALS 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,404,511
Number of extensions: 832504
Number of successful extensions: 3305
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3283
Number of HSP's successfully gapped: 9
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012122
(1158 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542122.1| lipid phosphate phosphohydrolase 3 [Mus musculu... 361 e-100
Alignment gi|NP_032929.1| lipid phosphate phosphohydrolase 1 isoform 2 [M... 171 1e-42
Alignment gi|NP_032273.1| lipid phosphate phosphohydrolase 1 isoform 1 [M... 166 4e-41
Alignment gi|NP_056632.2| lipid phosphate phosphohydrolase 2 [Mus musculu... 157 1e-38
Alignment gi|NP_848871.1| lipid phosphate phosphatase-related protein typ... 61 1e-09
Alignment gi|NP_808332.3| lipid phosphate phosphatase-related protein typ... 58 2e-08
Alignment gi|NP_083701.2| lipid phosphate phosphatase-related protein typ... 52 7e-07
>ref|NP_542122.1| lipid phosphate phosphohydrolase 3 [Mus musculus].
Length = 312
Score = 361 bits (926), Expect = e-100
Identities = 176/204 (86%), Positives = 181/204 (88%)
Frame = +2
Query: 503 MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK 682
MQ+YKYDKAIV ESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMA LPF+IIETSTIK
Sbjct: 1 MQSYKYDKAIVPESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAALPFLIIETSTIK 60
Query: 683 PYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ 862
PY RGFYCNDE+IKYPLK ETIND TGEFYRIYYLKEKSRST Q
Sbjct: 61 PYRRGFYCNDESIKYPLKVSETINDAVLCAVGIVIAILAIITGEFYRIYYLKEKSRSTTQ 120
Query: 863 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQNY 1042
NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVC+PDFSQINCSEGYIQNY
Sbjct: 121 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCDPDFSQINCSEGYIQNY 180
Query: 1043 KCRGEDSKVQEARKSFFSGHASSS 1114
+CRGEDSKVQEARKSFFSGHAS S
Sbjct: 181 RCRGEDSKVQEARKSFFSGHASFS 204
>ref|NP_032929.1| lipid phosphate phosphohydrolase 1 isoform 2 [Mus musculus].
Length = 283
Score = 171 bits (433), Expect = 1e-42
Identities = 84/172 (48%), Positives = 114/172 (66%)
Frame = +2
Query: 599 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 778
R+ + LD+ C+ +AGLPF I+ TS P+ RG +CND++IKYP K +TI
Sbjct: 6 RLPYVALDVICVLLAGLPFAIL-TSRHTPFQRGIFCNDDSIKYPYKE-DTIPYALLGGIV 63
Query: 779 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSI 958
GE +Y+ S S + NPY+A +YK VG FLFG + SQS TDIAK +I
Sbjct: 64 IPFCIIVMSIGESLSVYFNVLHSNSFVGNPYIATIYKAVGAFLFGVSASQSLTDIAKYTI 123
Query: 959 GRLRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHASSS 1114
G LRPHFL++CNPD+S+INCS+GYI++Y C+G + KV+E R SF+SGH+S S
Sbjct: 124 GSLRPHFLAICNPDWSKINCSDGYIEDYICQGNEEKVKEGRLSFYSGHSSFS 175
>ref|NP_032273.1| lipid phosphate phosphohydrolase 1 isoform 1 [Mus musculus].
Length = 284
Score = 166 bits (419), Expect = 4e-41
Identities = 77/172 (44%), Positives = 109/172 (63%)
Frame = +2
Query: 599 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 778
R+ + LD+ C+ +A +P I++ + P+ RGF+C D ++KYP TI
Sbjct: 6 RLPYVALDVICVLLAAMPMTILKLGKVYPFQRGFFCTDNSVKYPYHDS-TIPSRILAILG 64
Query: 779 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSI 958
GE +Y+ S S + NPY+A +YK VG FLFG + SQS TDIAK +I
Sbjct: 65 LGLPIFSMSIGESLSVYFNVLHSNSFVGNPYIATIYKAVGAFLFGVSASQSLTDIAKYTI 124
Query: 959 GRLRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHASSS 1114
G LRPHFL++CNPD+S+INCS+GYI++Y C+G + KV+E R SF+SGH+S S
Sbjct: 125 GSLRPHFLAICNPDWSKINCSDGYIEDYICQGNEEKVKEGRLSFYSGHSSFS 176
>ref|NP_056632.2| lipid phosphate phosphohydrolase 2 [Mus musculus].
Length = 276
Score = 157 bits (397), Expect = 1e-38
Identities = 84/171 (49%), Positives = 110/171 (64%)
Frame = +2
Query: 596 KRVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXX 775
+R + + LD+ C+ +A LPFII+ T PY RGFYC D++I+YP + +TI
Sbjct: 3 RRWVFVLLDVLCVLVASLPFIIL-TLVNAPYKRGFYCGDDSIRYPYRP-DTITHGLMAGV 60
Query: 776 XXXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVS 955
GE Y +Y + SRS N YVAA+YK +G FLFG A+SQS TD+AK
Sbjct: 61 IITATVILVSLGEAYLVYTDRLYSRSNFNN-YVAAIYKVLGTFLFGAAVSQSLTDLAKYM 119
Query: 956 IGRLRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHAS 1108
IGRLRP FL+VC+PD+SQ+NCS GY+Q CRG + V EAR SF+SGH+S
Sbjct: 120 IGRLRPSFLAVCDPDWSQVNCS-GYVQLEVCRGSPANVTEARLSFYSGHSS 169
>ref|NP_848871.1| lipid phosphate phosphatase-related protein type 1 [Mus musculus].
Length = 325
Score = 61.2 bits (147), Expect = 1e-09
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 22/206 (10%)
Frame = +2
Query: 563 ALNNNPRKGGSKRVLLICLDLFCLFMAG---LPFIIIETSTIKPYHRGFYCNDETIKYPL 733
A+ NN ++ S I ++L + MAG L + T T + + +GF+C D + P
Sbjct: 2 AVENNTQRSYSIIPCFIFVEL--VIMAGTVLLAYYFECTDTFQVHIQGFFCQDGDLMKPY 59
Query: 734 KTGET---INDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ-------------N 865
E I+ GE +Y++K S I +
Sbjct: 60 PGTEEESFISPLVLYCVLAATPTAIIFIGEI-SMYFIKSTRESLIAEEKMILTGDCCYLS 118
Query: 866 PYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINC--SEGYIQN 1039
P + + + +G F FG + F + +V G L P+FL+VC P+++ +C + +I N
Sbjct: 119 PLLRRIIRFIGVFAFGLFATDIFVNAGQVVTGHLTPYFLTVCQPNYTSTDCRAHQQFINN 178
Query: 1040 YK-CRGEDSKVQEARKSFFSGHASSS 1114
C G+ +++AR+SF S HA+ S
Sbjct: 179 GNICTGDLEVIEKARRSFPSKHAALS 204
>ref|NP_808332.3| lipid phosphate phosphatase-related protein type 4 [Mus musculus].
Length = 766
Score = 57.8 bits (138), Expect = 2e-08
Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Frame = +2
Query: 668 TSTIKPYHRGFYCNDETIKYPL--KTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKE 841
T KP H GF C D ++ P T E I GE +Y
Sbjct: 92 TDVFKPVHSGFSCYDRSLSMPYIEPTQEAIPFLMLLSLAFAGPAITIMVGEGI-LYCCLS 150
Query: 842 KSRSTIQ------------NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLS 985
K R+ N ++ + VG +FG + TDI ++S G P+FL+
Sbjct: 151 KRRNGAGLEPNINAGGCNFNSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFLT 210
Query: 986 VCNPDFSQINCS---EGYIQNYKCRGED-SKVQEARKSFFSGHAS 1108
VC P+++ +N S YI C G D + + RKSF S HA+
Sbjct: 211 VCKPNYTSLNVSCKENSYIVEDICSGSDLTVINSGRKSFPSQHAT 255
>ref|NP_083701.2| lipid phosphate phosphatase-related protein type 5 [Mus musculus].
Length = 316
Score = 52.4 bits (124), Expect = 7e-07
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +2
Query: 863 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQ-- 1036
NP V + +G + FG + F + +V G L PHFL++C P+++ + C + Y Q
Sbjct: 113 NPLVRRTVRFLGIYAFGLFATDIFVNAGQVVTGNLAPHFLALCKPNYTALGCQQ-YTQFI 171
Query: 1037 --NYKCRGEDSKVQEARKSFFSGHASSS 1114
C G + ARK+F S A+ S
Sbjct: 172 SGEEACTGNPDLIMRARKTFPSKEAALS 199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,935,860
Number of extensions: 866380
Number of successful extensions: 3997
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3980
Number of HSP's successfully gapped: 7
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012122
(1158 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003704.3| lipid phosphate phosphohydrolase 3 [Homo sapien... 365 e-101
Alignment gi|NP_003702.2| lipid phosphate phosphohydrolase 1 isoform 1 [H... 168 1e-41
Alignment gi|NP_795714.1| lipid phosphate phosphohydrolase 1 isoform 2 [H... 160 2e-39
Alignment gi|NP_003703.1| lipid phosphate phosphohydrolase 2 isoform 1 [H... 150 3e-36
Alignment gi|NP_808211.1| lipid phosphate phosphohydrolase 2 isoform 3 [H... 137 1e-32
Alignment gi|NP_803545.1| lipid phosphate phosphohydrolase 2 isoform 2 [H... 110 2e-24
Alignment gi|NP_997182.1| lipid phosphate phosphatase-related protein typ... 61 2e-09
Alignment gi|NP_060223.2| lipid phosphate phosphatase-related protein typ... 61 2e-09
Alignment gi|NP_001159724.1| lipid phosphate phosphatase-related protein ... 59 7e-09
Alignment gi|NP_055654.2| lipid phosphate phosphatase-related protein typ... 59 7e-09
>ref|NP_003704.3| lipid phosphate phosphohydrolase 3 [Homo sapiens].
Length = 311
Score = 365 bits (937), Expect = e-101
Identities = 179/204 (87%), Positives = 184/204 (90%)
Frame = +2
Query: 503 MQNYKYDKAIVAESKNGGSPALNNNPRKGGSKRVLLICLDLFCLFMAGLPFIIIETSTIK 682
MQNYKYDKAIV ESKNGGSPALNNNPR+ GSKRVLLICLDLFCLFMAGLPF+IIETSTIK
Sbjct: 1 MQNYKYDKAIVPESKNGGSPALNNNPRRSGSKRVLLICLDLFCLFMAGLPFLIIETSTIK 60
Query: 683 PYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ 862
PYHRGFYCNDE+IKYPLKTGETIND TGEFYRIYYLK KSRSTIQ
Sbjct: 61 PYHRGFYCNDESIKYPLKTGETINDAVLCAVGIVIAILAIITGEFYRIYYLK-KSRSTIQ 119
Query: 863 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQNY 1042
NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQNY
Sbjct: 120 NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQNY 179
Query: 1043 KCRGEDSKVQEARKSFFSGHASSS 1114
+CRG+DSKVQEARKSFFSGHAS S
Sbjct: 180 RCRGDDSKVQEARKSFFSGHASFS 203
>ref|NP_003702.2| lipid phosphate phosphohydrolase 1 isoform 1 [Homo sapiens].
Length = 284
Score = 168 bits (425), Expect = 1e-41
Identities = 87/172 (50%), Positives = 111/172 (64%)
Frame = +2
Query: 599 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 778
R+ + LD+ C+ +AGLPF I+ TS P+ RG +CNDE+IKYP K +TI
Sbjct: 6 RLPYVALDVLCVLLAGLPFAIL-TSRHTPFQRGVFCNDESIKYPYKE-DTIPYALLGGII 63
Query: 779 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSI 958
GE +Y S S I+N Y+A +YK +G FLFG A SQS TDIAK SI
Sbjct: 64 IPFSIIVIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSI 123
Query: 959 GRLRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHASSS 1114
GRLRPHFL VC+PD+S+INCS+GYI+ Y CRG +V+E R SF+SGH+S S
Sbjct: 124 GRLRPHFLDVCDPDWSKINCSDGYIEYYICRGNAERVKEGRLSFYSGHSSFS 175
>ref|NP_795714.1| lipid phosphate phosphohydrolase 1 isoform 2 [Homo sapiens].
Length = 285
Score = 160 bits (406), Expect = 2e-39
Identities = 78/172 (45%), Positives = 105/172 (61%)
Frame = +2
Query: 599 RVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXX 778
R+ + LD+ C+ +A +P +++ I P+ RGF+C D +I YP T+
Sbjct: 6 RLPYVALDVLCVLLASMPMAVLKLGQIYPFQRGFFCKDNSINYPYHDS-TVTSTVLILVG 64
Query: 779 XXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSI 958
GE +Y S S I+N Y+A +YK +G FLFG A SQS TDIAK SI
Sbjct: 65 VGLPISSIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSI 124
Query: 959 GRLRPHFLSVCNPDFSQINCSEGYIQNYKCRGEDSKVQEARKSFFSGHASSS 1114
GRLRPHFL VC+PD+S+INCS+GYI+ Y CRG +V+E R SF+SGH+S S
Sbjct: 125 GRLRPHFLDVCDPDWSKINCSDGYIEYYICRGNAERVKEGRLSFYSGHSSFS 176
>ref|NP_003703.1| lipid phosphate phosphohydrolase 2 isoform 1 [Homo sapiens].
Length = 288
Score = 150 bits (378), Expect = 3e-36
Identities = 83/172 (48%), Positives = 110/172 (63%), Gaps = 1/172 (0%)
Frame = +2
Query: 596 KRVLLICLDLFCLFMAGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXX 775
+R + + LD+ CL +A LPF I+ T PY RGFYC D++I+YP + +TI
Sbjct: 3 RRWVFVLLDVLCLLVASLPFAIL-TLVNAPYKRGFYCGDDSIRYPYRP-DTITHGLMAGV 60
Query: 776 XXXXXXXXXXTGEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVS 955
GE Y +Y + SRS N YVAA+YK +G FLFG A+SQS TD+AK
Sbjct: 61 TITATVILVSAGEAYLVYTDRLYSRSDFNN-YVAAVYKVLGTFLFGAAVSQSLTDLAKYM 119
Query: 956 IGRLRPHFLSVCNPDFSQINCSEGYIQNYK-CRGEDSKVQEARKSFFSGHAS 1108
IGRLRP+FL+VC+PD+S++NCS Y+Q K CRG + V EAR SF+SGH+S
Sbjct: 120 IGRLRPNFLAVCDPDWSRVNCSV-YVQLEKVCRGNPADVTEARLSFYSGHSS 170
>ref|NP_808211.1| lipid phosphate phosphohydrolase 2 isoform 3 [Homo sapiens].
Length = 309
Score = 137 bits (346), Expect = 1e-32
Identities = 78/157 (49%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Frame = +2
Query: 641 AGLPFIIIETSTIKPYHRGFYCNDETIKYPLKTGETINDXXXXXXXXXXXXXXXXTGEFY 820
A LPF I+ T PY RGFYC D++I+YP + +TI GE Y
Sbjct: 39 ASLPFAIL-TLVNAPYKRGFYCGDDSIRYPYRP-DTITHGLMAGVTITATVILVSAGEAY 96
Query: 821 RIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPD 1000
+Y + SRS N YVAA+YK +G FLFG A+SQS TD+AK IGRLRP+FL+VC+PD
Sbjct: 97 LVYTDRLYSRSDFNN-YVAAVYKVLGTFLFGAAVSQSLTDLAKYMIGRLRPNFLAVCDPD 155
Query: 1001 FSQINCSEGYIQNYK-CRGEDSKVQEARKSFFSGHAS 1108
+S++NCS Y+Q K CRG + V EAR SF+SGH+S
Sbjct: 156 WSRVNCSV-YVQLEKVCRGNPADVTEARLSFYSGHSS 191
>ref|NP_803545.1| lipid phosphate phosphohydrolase 2 isoform 2 [Homo sapiens].
Length = 232
Score = 110 bits (276), Expect = 2e-24
Identities = 59/101 (58%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Frame = +2
Query: 809 GEFYRIYYLKEKSRSTIQNPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSV 988
GE Y +Y + SRS N YVAA+YK +G FLFG A+SQS TD+AK IGRLRP+FL+V
Sbjct: 16 GEAYLVYTDRLYSRSDFNN-YVAAVYKVLGTFLFGAAVSQSLTDLAKYMIGRLRPNFLAV 74
Query: 989 CNPDFSQINCSEGYIQNYK-CRGEDSKVQEARKSFFSGHAS 1108
C+PD+S++NCS Y+Q K CRG + V EAR SF+SGH+S
Sbjct: 75 CDPDWSRVNCSV-YVQLEKVCRGNPADVTEARLSFYSGHSS 114
>ref|NP_997182.1| lipid phosphate phosphatase-related protein type 1 [Homo sapiens].
Length = 325
Score = 61.2 bits (147), Expect = 2e-09
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 22/206 (10%)
Frame = +2
Query: 563 ALNNNPRKGGSKRVLLICLDLFCLFMAG---LPFIIIETSTIKPYHRGFYCNDETIKYPL 733
A+ NN ++ S I ++L + MAG L + T T + + +GF+C D + P
Sbjct: 2 AVGNNTQRSYSIIPCFIFVEL--VIMAGTVLLAYYFECTDTFQVHIQGFFCQDGDLMKPY 59
Query: 734 KTGET---INDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ-------------N 865
E I GE +Y++K S I N
Sbjct: 60 PGTEEESFITPLVLYCVLAATPTAIIFIGEI-SMYFIKSTRESLIAQEKTILTGECCYLN 118
Query: 866 PYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCS--EGYIQN 1039
P + + + G F FG + F + +V G L P+FL+VC P+++ +C +I N
Sbjct: 119 PLLRRIIRFTGVFAFGLFATDIFVNAGQVVTGHLTPYFLTVCKPNYTSADCQAHHQFINN 178
Query: 1040 YK-CRGEDSKVQEARKSFFSGHASSS 1114
C G+ +++AR+SF S HA+ S
Sbjct: 179 GNICTGDLEVIEKARRSFPSKHAALS 204
>ref|NP_060223.2| lipid phosphate phosphatase-related protein type 1 [Homo sapiens].
Length = 325
Score = 61.2 bits (147), Expect = 2e-09
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 22/206 (10%)
Frame = +2
Query: 563 ALNNNPRKGGSKRVLLICLDLFCLFMAG---LPFIIIETSTIKPYHRGFYCNDETIKYPL 733
A+ NN ++ S I ++L + MAG L + T T + + +GF+C D + P
Sbjct: 2 AVGNNTQRSYSIIPCFIFVEL--VIMAGTVLLAYYFECTDTFQVHIQGFFCQDGDLMKPY 59
Query: 734 KTGET---INDXXXXXXXXXXXXXXXXTGEFYRIYYLKEKSRSTIQ-------------N 865
E I GE +Y++K S I N
Sbjct: 60 PGTEEESFITPLVLYCVLAATPTAIIFIGEI-SMYFIKSTRESLIAQEKTILTGECCYLN 118
Query: 866 PYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLSVCNPDFSQINCS--EGYIQN 1039
P + + + G F FG + F + +V G L P+FL+VC P+++ +C +I N
Sbjct: 119 PLLRRIIRFTGVFAFGLFATDIFVNAGQVVTGHLTPYFLTVCKPNYTSADCQAHHQFINN 178
Query: 1040 YK-CRGEDSKVQEARKSFFSGHASSS 1114
C G+ +++AR+SF S HA+ S
Sbjct: 179 GNICTGDLEVIEKARRSFPSKHAALS 204
>ref|NP_001159724.1| lipid phosphate phosphatase-related protein type 4 isoform 2 [Homo
sapiens].
Length = 705
Score = 59.3 bits (142), Expect = 7e-09
Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Frame = +2
Query: 668 TSTIKPYHRGFYCNDETIKYPL--KTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKE 841
T KP H GF C D ++ P T E I GE +Y
Sbjct: 91 TDVFKPVHSGFSCYDRSLSMPYIEPTQEAIPFLMLLSLAFAGPAITIMVGEGI-LYCCLS 149
Query: 842 KSRSTIQ------------NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLS 985
K R+ + N ++ + VG +FG + TDI ++S G P+FL+
Sbjct: 150 KRRNGVGLEPNINAGGCNFNSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFLT 209
Query: 986 VCNPDFSQINCS---EGYIQNYKCRGED-SKVQEARKSFFSGHAS 1108
VC P+++ +N S YI C G D + + RKSF S HA+
Sbjct: 210 VCKPNYTSLNVSCKENSYIVEDICSGSDLTVINSGRKSFPSQHAT 254
>ref|NP_055654.2| lipid phosphate phosphatase-related protein type 4 isoform 1 [Homo
sapiens].
Length = 763
Score = 59.3 bits (142), Expect = 7e-09
Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Frame = +2
Query: 668 TSTIKPYHRGFYCNDETIKYPL--KTGETINDXXXXXXXXXXXXXXXXTGEFYRIYYLKE 841
T KP H GF C D ++ P T E I GE +Y
Sbjct: 91 TDVFKPVHSGFSCYDRSLSMPYIEPTQEAIPFLMLLSLAFAGPAITIMVGEGI-LYCCLS 149
Query: 842 KSRSTIQ------------NPYVAALYKQVGCFLFGCAISQSFTDIAKVSIGRLRPHFLS 985
K R+ + N ++ + VG +FG + TDI ++S G P+FL+
Sbjct: 150 KRRNGVGLEPNINAGGCNFNSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFLT 209
Query: 986 VCNPDFSQINCS---EGYIQNYKCRGED-SKVQEARKSFFSGHAS 1108
VC P+++ +N S YI C G D + + RKSF S HA+
Sbjct: 210 VCKPNYTSLNVSCKENSYIVEDICSGSDLTVINSGRKSFPSQHAT 254
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,225,425
Number of extensions: 1038839
Number of successful extensions: 5022
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4982
Number of HSP's successfully gapped: 12
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012122
(1158 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1053 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1053 bits (531), Expect = 0.0
Identities = 537/539 (99%)
Strand = Plus / Plus
Query: 103 aggaggaggaaagtaggagttggggcagcgctccgaggtggctgggctccgcgcagctcc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642325 aggaggaggaaagtaggagttggggcagcgctccgaggtggctgggctccgcgcagctcc 143642384
Query: 163 cattcattaagcaaccagctgcggaggaaggtggccgagcgcccgcgctgccccctcgct 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642385 cattcattaagcaaccagctgcggaggaaggtggccgagcgcccgcgctgccccctcgct 143642444
Query: 223 gctttgcgcacggacacgccagctccgcgcgtccgaagcagcgcagcgctgcagaagttt 282
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 143642445 gctttgcgcacggacacgccagctccgcgcgtccggagcaacgcagcgctgcagaagttt 143642504
Query: 283 ctgctcgggagttgactctcttccccttggactttcgaacgattcggggttgagacagga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642505 ctgctcgggagttgactctcttccccttggactttcgaacgattcggggttgagacagga 143642564
Query: 343 aaagcggaggagcaccagggagcagaaagcaccaccgcctgcccttggaagcggggcagc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642565 aaagcggaggagcaccagggagcagaaagcaccaccgcctgcccttggaagcggggcagc 143642624
Query: 403 ggggccgcactctcccgccgcgccccgagaagcctcggtcgggaggcgaccccggcgtct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642625 ggggccgcactctcccgccgcgccccgagaagcctcggtcgggaggcgaccccggcgtct 143642684
Query: 463 gggtgtgtggctgcagtcgtggggcgtcttggccagcgccatgcaaaactacaagtacga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642685 gggtgtgtggctgcagtcgtggggcgtcttggccagcgccatgcaaaactacaagtacga 143642744
Query: 523 caaggctatcgtcgcggagagcaagaacggcggcagcccggcgctcaataacaacccgag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642745 caaggctatcgtcgcggagagcaagaacggcggcagcccggcgctcaataacaacccgag 143642804
Query: 583 gaagggcggcagcaagcgggtgctgctcatctgcctggacctcttctgcctcttcatgg 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143642805 gaagggcggcagcaagcgggtgctgctcatctgcctggacctcttctgcctcttcatgg 143642863
Score = 561 bits (283), Expect = e-157
Identities = 283/283 (100%)
Strand = Plus / Plus
Query: 799 gatcatcacgggggaattctaccgcatctattacctgaaggagaagtcccggtcgacaat 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143706338 gatcatcacgggggaattctaccgcatctattacctgaaggagaagtcccggtcgacaat 143706397
Query: 859 ccagaatccctatgtggcagccctctataagcaagtgggctgcttcctcttcggctgtgc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143706398 ccagaatccctatgtggcagccctctataagcaagtgggctgcttcctcttcggctgtgc 143706457
Query: 919 catcagccagtccttcacggacattgccaaggtctccatagggcgcctgcgtcctcactt 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143706458 catcagccagtccttcacggacattgccaaggtctccatagggcgcctgcgtcctcactt 143706517
Query: 979 cttgagcgtctgcaaccccgatttcagccagatcaactgctccgaaggctacatccaaaa 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143706518 cttgagcgtctgcaaccccgatttcagccagatcaactgctccgaaggctacatccaaaa 143706577
Query: 1039 ctacaagtgtagaggcgaggacagcaaagtccaggaagccagg 1081
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143706578 ctacaagtgtagaggcgaggacagcaaagtccaggaagccagg 143706620
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 641 gcgggcctgcccttcatcatcatcgagacaagcaccatcaagccttaccaccggggtttt 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143689202 gcgggcctgcccttcatcatcatcgagacaagcaccatcaagccttaccaccggggtttt 143689261
Query: 701 tattgcaatgacgagaccatcaagtacccgctgaaaaccggggagacaatcaatgatgct 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143689262 tattgcaatgacgagaccatcaagtacccgctgaaaaccggggagacaatcaatgatgct 143689321
Query: 761 gtgctctgcgctgtgggcattgtgatcgccatcctcgcg 799
|||||||||||||||||||||||||||||||||||||||
Sbjct: 143689322 gtgctctgcgctgtgggcattgtgatcgccatcctcgcg 143689360
Score = 73.8 bits (37), Expect = 2e-10
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1078 caggaagtccttcttctctggccatgcct-cttcctcatgtaccctaggctgtatctgat 1136
||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||
Sbjct: 143707033 caggaagtccttcttctctggccatgcctccttctccatgtacactatgctgtatctgat 143707092
Query: 1137 g 1137
|
Sbjct: 143707093 g 143707093
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,731,206
Number of extensions: 113
Number of successful extensions: 113
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 4
Length of query: 1158
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1137
Effective length of database: 2,808,413,156
Effective search space: 3193165758372
Effective search space used: 3193165758372
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)