Animal-Genome cDNA 20110601C-012141

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012141
         (1105 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776946.1| coronin-1A [Bos taurus].                             545   e-170
Alignment   gi|NP_001075059.1| coronin-1C [Bos taurus].                          427   e-131
Alignment   gi|NP_001106714.1| coronin, actin binding protein, 1B [Bos taur...   428   e-130
Alignment   gi|NP_001095752.1| coronin-6 [Bos taurus].                           332   e-102
Alignment   gi|XP_002690572.1| PREDICTED: coronin, actin binding protein, 2...   264   7e-77
Alignment   gi|NP_001033309.1| coronin-2A [Bos taurus].                          257   3e-72
Alignment   gi|XP_002706553.1| PREDICTED: coronin, actin binding protein, 2...   204   2e-56
Alignment   gi|NP_001069371.1| coronin-7 [Bos taurus].                           145   4e-36
Alignment   gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].       71   1e-12
Alignment   gi|NP_001070481.1| histone-binding protein RBBP4 [Bos taurus].        68   1e-11

>ref|NP_776946.1| coronin-1A [Bos taurus].
          Length = 461

 Score =  545 bits (1405), Expect(3) = e-170
 Identities = 261/272 (95%), Positives = 264/272 (97%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQPAKADQCYEDVRVSQ TWDSGFCAVNPKFVALICEASGGGAFLVLPL KTGR
Sbjct: 10  KFRHVFGQPAKADQCYEDVRVSQNTWDSGFCAVNPKFVALICEASGGGAFLVLPLGKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKN PMVCGHTAPVLDIAWCPHNDNVIASGSEDC+VMVWEIPDGGLTLPLREPVVTLEG
Sbjct: 70  VDKNVPMVCGHTAPVLDIAWCPHNDNVIASGSEDCSVMVWEIPDGGLTLPLREPVVTLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG AVLTLGSDVHPDTIYSVDWSRDGA
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGVAVLTLGSDVHPDTIYSVDWSRDGA 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGK   TGFSRM+ERQVAL
Sbjct: 190 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKILTTGFSRMSERQVAL 249

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WDTKHLEEPLSLQELDTSSGVLLPFFDPDT +
Sbjct: 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI 281



 Score = 50.8 bits (120), Expect(3) = e-170
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  N VYLCGKGDSSIRYF+ITSEAPF
Sbjct: 277  PDTNIVYLCGKGDSSIRYFEITSEAPF 303



 Score = 45.4 bits (106), Expect(3) = e-170
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PFL YLS F S++S RGMGY+P  GLEVN
Sbjct: 302  PFLHYLSMFSSKESQRGMGYMPKRGLEVN 330


>ref|NP_001075059.1| coronin-1C [Bos taurus].
          Length = 474

 Score =  427 bits (1097), Expect(3) = e-131
 Identities = 193/272 (70%), Positives = 237/272 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ  K DQCY+D+RVS+ TWDS FCAVNP+FVA+I EASGGGAFLVLPL KTGR
Sbjct: 9   KFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGR 68

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK+ P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLTL L EPVV LEG
Sbjct: 69  IDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEG 128

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGIVAWHPTA+NVLLSAGCDN I++W+VGTG A++ L  D+H D IY+V W+R+G+
Sbjct: 129 HSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINL-DDMHSDMIYNVSWNRNGS 187

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           LICT+ +DK+VR+I+PRK  IVAEK++ HEG RP+RA+F++DG    TGFSRM+ERQ+AL
Sbjct: 188 LICTASKDKKVRVIDPRKQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLAL 247

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           W+ K++EEP++L E+DTS+GVLLPF+DPDT++
Sbjct: 248 WNPKNMEEPIALHEMDTSNGVLLPFYDPDTSI 279



 Score = 44.7 bits (104), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + +YLCGKGDSSIRYF+IT E+P+
Sbjct: 275  PDTSIIYLCGKGDSSIRYFEITDESPY 301



 Score = 38.9 bits (89), Expect(3) = e-131
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ YL+ F S++  RGMGY+P  GL+VN
Sbjct: 300  PYVHYLNTFSSKEPQRGMGYMPKRGLDVN 328


>ref|NP_001106714.1| coronin, actin binding protein, 1B [Bos taurus].
          Length = 488

 Score =  428 bits (1101), Expect(3) = e-130
 Identities = 193/272 (70%), Positives = 234/272 (86%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQP K DQCYED+RVS+ TWDS FCAVNPKF+A+I EASGGGAFLVLPLSKTGR
Sbjct: 10  KFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFLVLPLSKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK  P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GL  PL EPVV LEG
Sbjct: 70  IDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLVSPLTEPVVVLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGIV WHPTA+NVLLSAGCDN++L+W+VGT   +  L S +HPD IY+V W+R+G+
Sbjct: 130 HTKRVGIVTWHPTARNVLLSAGCDNMVLIWNVGTAEELYRLDS-LHPDLIYNVSWNRNGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L CT+C+DK VR+I+PR+GT+VAE+++ HEG RP+RA+F++DGK   TGFSRM+ERQ+AL
Sbjct: 189 LFCTACKDKSVRVIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSERQLAL 248

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD ++  EP++LQELD+S+G LLPF+DPDT +
Sbjct: 249 WDPENFGEPMALQELDSSNGALLPFYDPDTNV 280



 Score = 45.1 bits (105), Expect(3) = e-130
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  N VY+CGKGDSSIRYF+IT E P+
Sbjct: 276  PDTNVVYVCGKGDSSIRYFEITDEPPY 302



 Score = 33.9 bits (76), Expect(3) = e-130
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ +L+ F S++  RGMG +P  GLEV+
Sbjct: 301  PYIHFLNTFTSKEPQRGMGSMPKRGLEVS 329


>ref|NP_001095752.1| coronin-6 [Bos taurus].
          Length = 431

 Score =  332 bits (850), Expect(3) = e-102
 Identities = 159/272 (58%), Positives = 201/272 (73%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ AKADQ YED+RVS+ TWDS FCAVNPKF+A+I EA GGGAF+VLPL+KTGR
Sbjct: 10  KFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKN P+V GHTAPVLDI WCPHNDNVIAS S+D T+MVW+IPD      + EP++TLEG
Sbjct: 70  VDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPVRSITEPIITLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGI++WHPTA+NVLLSAG DNVI++W+VGTG  +L+L  D+HPD I+SV W+ +G+
Sbjct: 130 HSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSL-DDMHPDVIHSVCWNTNGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L+ T+C+DK +RII+PRKG +VA                                     
Sbjct: 189 LLATTCKDKTLRIIDPRKGQVVA------------------------------------- 211

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
               + EEP++LQE+DTS+GVLLPF+DPD+++
Sbjct: 212 ---NNFEEPVALQEMDTSNGVLLPFYDPDSSI 240



 Score = 45.8 bits (107), Expect(3) = e-102
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VYLCGKGDSSIRYF+IT E PF
Sbjct: 236  PDSSIVYLCGKGDSSIRYFEITEEPPF 262



 Score = 36.6 bits (83), Expect(3) = e-102
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PF+ YL+ F S++  RGMG++P  GL+V+
Sbjct: 261  PFVHYLNTFSSKEPQRGMGFMPKRGLDVS 289


>ref|XP_002690572.1| PREDICTED: coronin, actin binding protein, 2B-like [Bos taurus].
          Length = 442

 Score =  264 bits (675), Expect(3) = 7e-77
 Identities = 125/273 (45%), Positives = 186/273 (68%), Gaps = 1/273 (0%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFR+V+G+ A  + C++ + +++   D+ FCAVN +F+A++ E++GGG+FLV+PL +TGR
Sbjct: 11  KFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNARFLAIVTESAGGGSFLVIPLEQTGR 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           ++ N P VCGH   VLDI W P  DN+IAS SED +V +WEIP+GGL   + E ++ L G
Sbjct: 71  IEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLELHG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H++RVG+V WHPT  N+L SAG D  +L+W++  G  V  +  D H D I  + ++ DG+
Sbjct: 131 HSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDVGEPVKMI--DCHSDVILCMSFNTDGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNERQVA 859
           L+ T+C+DK++R+IEPR G ++ E +  +   R  R VF+ + K+   TG SR N RQ+A
Sbjct: 189 LLTTTCKDKKLRVIEPRSGRVLQEANCKNH--RVNRVVFLGNMKRLLTTGVSRWNTRQIA 246

Query: 860 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           LWD + L  PL  +E+D  SG+L PF+D DT M
Sbjct: 247 LWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHM 279



 Score = 34.3 bits (77), Expect(3) = 7e-77
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAPF 1023
            +YL GKGD +IRY++I++E P+
Sbjct: 280  LYLAGKGDGNIRYYEISTEKPY 301



 Score = 29.6 bits (65), Expect(3) = 7e-77
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P+L+YL  F S    +G+G +P  GL+V+
Sbjct: 300  PYLSYLMEFRSPAPQKGLGVMPKHGLDVS 328


>ref|NP_001033309.1| coronin-2A [Bos taurus].
          Length = 525

 Score =  257 bits (656), Expect(3) = 3e-72
 Identities = 124/276 (44%), Positives = 185/276 (67%), Gaps = 4/276 (1%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFG+PA  + CY+ V ++ +  D+ FCAVNP F+A++ E +GGGAFLV+PL +TG+
Sbjct: 11  KFRHVFGKPASKENCYDSVPITHSVQDNHFCAVNPHFIAVVTECTGGGAFLVIPLHQTGK 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +D + P VCGH   VLD+ W P ND  IAS SED T+ +W+IP   LT  L      L G
Sbjct: 71  LDPHYPKVCGHRGNVLDVKWNPFNDFEIASCSEDATIKIWDIPKQLLTKNLTAFRKELVG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL---TLGSDVHPDTIYSVDWSR 673
           H ++VG+V WHPTA N+L S+G D  ++VW++ +  +V+       + H D I S+ ++ 
Sbjct: 131 HARKVGLVEWHPTAANILFSSGYDYKVMVWNLDSKESVIMSPVKTINCHQDVILSMSFNT 190

Query: 674 DGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNER 850
           +G+L+ T+C+D+++R+++PR GT++ E +  ++G R  + +F+ + KK   TG SR N R
Sbjct: 191 NGSLLATACKDRKIRVLDPRAGTVLQEAN--YKGHRANKVLFLGNLKKLLSTGTSRWNNR 248

Query: 851 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           Q+ALWD   L  P++  +LD SSGVL PF+D DT M
Sbjct: 249 QMALWDQDDLSVPVTEVDLDGSSGVLFPFYDADTNM 284



 Score = 28.9 bits (63), Expect(3) = 3e-72
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 952  NNVYLCGKGDSSIRYFQITSEAP 1020
            N +Y+ GKGD +I Y++I++  P
Sbjct: 283  NMLYVVGKGDRNIHYYEISANKP 305



 Score = 26.9 bits (58), Expect(3) = 3e-72
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P L YL  + S +  +G+G +P  GL+V+
Sbjct: 305  PHLNYLMEYHSYNPQKGIGVMPKRGLDVS 333


>ref|XP_002706553.1| PREDICTED: coronin, actin binding protein, 2B, partial [Bos
           taurus].
          Length = 430

 Score =  204 bits (520), Expect(2) = 2e-56
 Identities = 101/216 (46%), Positives = 142/216 (65%), Gaps = 1/216 (0%)
 Frame = +2

Query: 314 TGRVDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVT 493
           TGR++ N P VCGH   VLDI W P  DN+IAS SED +V +WEIP+GGL   + E ++ 
Sbjct: 1   TGRIEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLE 60

Query: 494 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSR 673
           L GH++RVG+V WHPT  N+L SAG D  +L+W++  G  V  +  D H D I  + ++ 
Sbjct: 61  LHGHSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDVGEPVKMI--DCHSDVILCMSFNT 118

Query: 674 DGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNER 850
           DG+L+ T+C+DK++R+IEPR G ++ E +  +   R  R VF+ + K+   TG SR N R
Sbjct: 119 DGSLLTTTCKDKKLRVIEPRSGRVLQEANCKNH--RVNRVVFLGNMKRLLTTGVSRWNTR 176

Query: 851 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           Q+ALWD + L  PL  +E+D  SG+L PF+D DT M
Sbjct: 177 QIALWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHM 212



 Score = 34.3 bits (77), Expect(2) = 2e-56
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAPF 1023
            +YL GKGD +IRY++I++E P+
Sbjct: 213  LYLAGKGDGNIRYYEISTEKPY 234


>ref|NP_001069371.1| coronin-7 [Bos taurus].
          Length = 915

 Score =  145 bits (367), Expect(2) = 4e-36
 Identities = 94/275 (34%), Positives = 134/275 (48%), Gaps = 5/275 (1%)
 Frame = +2

Query: 143  KFRHVFGQPAKADQCYEDVRVSQTTW---DSGFCAVNPKFVALICEASGGGAFLVLPLSK 313
            KFRH  G     D    +++    T      GFCA   +    +   S GG   VL L K
Sbjct: 463  KFRHAQGSVLHRDSHITNLKGLNLTTPGESDGFCANQLRVAVPLL--SSGGQVAVLELRK 520

Query: 314  TGRVDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVT 493
             GR+   A     +   V D+AW P + + +A   ED  + +W +P  GL   L  P   
Sbjct: 521  PGRLPDTALPTLQNGVAVTDLAWDPFDPHRLAVAGEDARIRLWRVPPDGLQEVLTMPEAV 580

Query: 494  LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSR 673
            L GHT+++  + +HP A +VL S+  D  + +WD+  GA  L L    H D I+ + WS 
Sbjct: 581  LTGHTEKIYSLRFHPLAADVLASSSYDLTVRIWDLKVGAEQLRLQG--HRDQIFGLAWSP 638

Query: 674  DGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGK-KSDTGFSRMNER 850
            DG  + T C+D R+RI EPR      ++    EG R  R V+V DG     +GF   +ER
Sbjct: 639  DGQQLATVCKDGRLRIYEPRGSPEPLQEGPGPEGARGARVVWVCDGHYLLVSGFDSRSER 698

Query: 851  QVALWDTKHLE-EPLSLQELDTSSGVLLPFFDPDT 952
            Q+ L+  K L   P ++  LD +   LLP +DPDT
Sbjct: 699  QLLLYSAKALAGGPSAVLGLDVAPSTLLPSYDPDT 733



 Score = 24.6 bits (52), Expect(2) = 4e-36
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAPFWPIC 1035
            V L GKGD+ +  +++   APF+  C
Sbjct: 736  VLLTGKGDTRVFLYELLPGAPFFLEC 761



 Score =  135 bits (341), Expect = 5e-32
 Identities = 86/271 (31%), Positives = 132/271 (48%), Gaps = 1/271 (0%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRH   +  + +    D+R             +   +A    +   G   ++PL   G 
Sbjct: 8   KFRHTEARQPRREAWIGDIRAGTAPSCGNHIKASCSLIAF--NSDHPGVLGIVPLESQGE 65

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
             +    +  H+  V D+ + P +D ++A+ S D TV +W +P  G  LP   P + L  
Sbjct: 66  DKRQVTHLGCHSDLVTDLDFSPFDDFLLATASADRTVKLWRLPLSGQALP-SGPGLLLGP 124

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
              +V ++ +HPTA  VLLSA     + VWD      +  L +  H D +    WSRDGA
Sbjct: 125 EDAQVEVLQFHPTADGVLLSAA-GRAVKVWDATKQQPLTELAT--HGDLVQGAAWSRDGA 181

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGK-KSDTGFSRMNERQVA 859
           L+ T+C+DK++RI +PR     A+    HE +R  R V+    +    TGF++M ER+V 
Sbjct: 182 LLGTTCKDKQLRIFDPRAKPEAAQSTPAHENSRDGRLVWTGTQEYLVSTGFNQMREREVK 241

Query: 860 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDT 952
           LWDT+     L+   LDTS   L+P  DPD+
Sbjct: 242 LWDTRLFSAALTSLTLDTSPRSLVPLLDPDS 272


>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
          Length = 334

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 41/132 (31%), Positives = 73/132 (55%)
 Frame = +2

Query: 344 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEGHTKRVGI 523
           + GH   + D+AW   + N++ S S+D T+ +W++  G       + + TL+GH+  V  
Sbjct: 83  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFC 134

Query: 524 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGALICTSCR 703
             ++P + N+++S   D  + +WDV TG  + TL +  H D + +V ++RDG+LI +S  
Sbjct: 135 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPA--HSDPVSAVHFNRDGSLIVSSSY 191

Query: 704 DKRVRIIEPRKG 739
           D   RI +   G
Sbjct: 192 DGLCRIWDTASG 203


>ref|NP_001070481.1| histone-binding protein RBBP4 [Bos taurus].
          Length = 425

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 50/222 (22%), Positives = 104/222 (46%), Gaps = 6/222 (2%)
 Frame = +2

Query: 164 QPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLS---KTGRVDKN 334
           +P  + +C  D+R+     +    + NP     +  AS      +  +S   K G+V   
Sbjct: 160 KPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDA 219

Query: 335 APMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEGHTKR 514
             +  GHTA V D++W   ++++  S ++D  +M+W+      +    +P  +++ HT  
Sbjct: 220 KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTS----KPSHSVDAHTAE 275

Query: 515 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGS-DVHPDTIYSVDWS-RDGALI 688
           V  ++++P ++ +L +   D  + +WD+      L L S + H D I+ V WS  +  ++
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPHNETIL 333

Query: 689 CTSCRDKRVRIIEPRKGTIVAEKDRPHEG-TRPVRAVFVSDG 811
            +S  D+R+ + +  K   + E+  P +    P   +F+  G
Sbjct: 334 ASSGTDRRLNVWDLSK---IGEEQSPEDAEDGPPELLFIHGG 372


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,449,725
Number of extensions: 1508749
Number of successful extensions: 7018
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 6760
Number of HSP's successfully gapped: 86
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012141
         (1105 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_547069.2| PREDICTED: similar to Coronin-1A (Coronin-like ...   531   e-166
Alignment   gi|XP_533215.2| PREDICTED: similar to coronin, actin binding pr...   434   e-131
Alignment   gi|XP_864679.1| PREDICTED: similar to coronin, actin binding pr...   434   e-131
Alignment   gi|XP_864662.1| PREDICTED: similar to coronin, actin binding pr...   434   e-131
Alignment   gi|XP_543444.2| PREDICTED: similar to Coronin-1C (Coronin-3) (h...   426   e-131
Alignment   gi|XP_548302.2| PREDICTED: similar to coronin relative protein ...   393   e-121
Alignment   gi|XP_864648.1| PREDICTED: similar to coronin, actin binding pr...   359   e-109
Alignment   gi|XP_868335.1| PREDICTED: similar to coronin, actin binding pr...   331   e-102
Alignment   gi|XP_544743.2| PREDICTED: similar to Coronin-2B (Coronin-like ...   264   1e-77
Alignment   gi|XP_538747.2| PREDICTED: similar to coronin, actin binding pr...   254   2e-72

>ref|XP_547069.2| PREDICTED: similar to Coronin-1A (Coronin-like protein p57)
           (Coronin-like protein A) (CLIPINA) (Tryptophan
           aspartate-containing coat protein) (TACO) isoform 1
           [Canis familiaris].
          Length = 495

 Score =  531 bits (1367), Expect(3) = e-166
 Identities = 262/306 (85%), Positives = 266/306 (86%), Gaps = 34/306 (11%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSK--- 313
           KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKF+ALICEASGGGAFLVLPL K   
Sbjct: 10  KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKEAG 69

Query: 314 -------------------------------TGRVDKNAPMVCGHTAPVLDIAWCPHNDN 400
                                          TGRVDKNAP VCGHTAPVLDIAWCPHNDN
Sbjct: 70  VGVPALRASARKACPTSQGLHCLPLWASLRGTGRVDKNAPTVCGHTAPVLDIAWCPHNDN 129

Query: 401 VIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 580
           VIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEGHTKRVGIVAWHPTAQNVLLSAGCDNV
Sbjct: 130 VIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 189

Query: 581 ILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGALICTSCRDKRVRIIEPRKGTIVAEKD 760
           ILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGALICTSCRDKRVRIIEPRKGT+VAEKD
Sbjct: 190 ILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGALICTSCRDKRVRIIEPRKGTVVAEKD 249

Query: 761 RPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 940
           RPHEGTRPVRAVFVSDGK   TGFSRM+ERQVALWDTKHLEEPLSLQELDTSSGVLLPFF
Sbjct: 250 RPHEGTRPVRAVFVSDGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 309

Query: 941 DPDTTM 958
           DPDT +
Sbjct: 310 DPDTNI 315



 Score = 50.8 bits (120), Expect(3) = e-166
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  N VYLCGKGDSSIRYF+ITSEAPF
Sbjct: 311  PDTNIVYLCGKGDSSIRYFEITSEAPF 337



 Score = 45.4 bits (106), Expect(3) = e-166
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PFL YLS F S++S RGMGY+P  GLEVN
Sbjct: 336  PFLHYLSMFSSKESQRGMGYMPKRGLEVN 364


>ref|XP_533215.2| PREDICTED: similar to coronin, actin binding protein, 1B isoform 1
           [Canis familiaris].
          Length = 489

 Score =  434 bits (1115), Expect(3) = e-131
 Identities = 196/272 (72%), Positives = 238/272 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQP K DQCYED+RVS+ TWDS FCAVNP+F+A+I EASGGGAFLVLPLSKTGR
Sbjct: 11  KFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPRFLAVIVEASGGGAFLVLPLSKTGR 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK  P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLT PL EPVV LEG
Sbjct: 71  IDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGIV WHPTA+NVLLSAGCDNV+L+W+VGT   +  L S +HPD IY+V W+R+G+
Sbjct: 131 HTKRVGIVTWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDS-LHPDLIYNVSWNRNGS 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L C++C+DK VRII+PR+GT+VAE+++ HEG RP+RA+F++DGK   TGFSRM+ERQ+AL
Sbjct: 190 LFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSERQLAL 249

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD ++LEEP++LQELD+S+G LLPF+DPDT++
Sbjct: 250 WDPENLEEPMALQELDSSNGALLPFYDPDTSV 281



 Score = 43.1 bits (100), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VY+CGKGDSSIRYF+IT E P+
Sbjct: 277  PDTSVVYVCGKGDSSIRYFEITDEPPY 303



 Score = 33.9 bits (76), Expect(3) = e-131
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ +L+ F S++  RGMG +P  GLEV+
Sbjct: 302  PYIHFLNTFTSKEPQRGMGSMPKRGLEVS 330


>ref|XP_864679.1| PREDICTED: similar to coronin, actin binding protein, 1B isoform 4
           [Canis familiaris].
          Length = 478

 Score =  434 bits (1115), Expect(3) = e-131
 Identities = 196/272 (72%), Positives = 238/272 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQP K DQCYED+RVS+ TWDS FCAVNP+F+A+I EASGGGAFLVLPLSKTGR
Sbjct: 11  KFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPRFLAVIVEASGGGAFLVLPLSKTGR 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK  P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLT PL EPVV LEG
Sbjct: 71  IDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGIV WHPTA+NVLLSAGCDNV+L+W+VGT   +  L S +HPD IY+V W+R+G+
Sbjct: 131 HTKRVGIVTWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDS-LHPDLIYNVSWNRNGS 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L C++C+DK VRII+PR+GT+VAE+++ HEG RP+RA+F++DGK   TGFSRM+ERQ+AL
Sbjct: 190 LFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSERQLAL 249

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD ++LEEP++LQELD+S+G LLPF+DPDT++
Sbjct: 250 WDPENLEEPMALQELDSSNGALLPFYDPDTSV 281



 Score = 43.1 bits (100), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VY+CGKGDSSIRYF+IT E P+
Sbjct: 277  PDTSVVYVCGKGDSSIRYFEITDEPPY 303



 Score = 33.9 bits (76), Expect(3) = e-131
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ +L+ F S++  RGMG +P  GLEV+
Sbjct: 302  PYIHFLNTFTSKEPQRGMGSMPKRGLEVS 330


>ref|XP_864662.1| PREDICTED: similar to coronin, actin binding protein, 1B isoform 3
           [Canis familiaris].
          Length = 475

 Score =  434 bits (1115), Expect(3) = e-131
 Identities = 196/272 (72%), Positives = 238/272 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQP K DQCYED+RVS+ TWDS FCAVNP+F+A+I EASGGGAFLVLPLSKTGR
Sbjct: 11  KFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPRFLAVIVEASGGGAFLVLPLSKTGR 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK  P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLT PL EPVV LEG
Sbjct: 71  IDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGIV WHPTA+NVLLSAGCDNV+L+W+VGT   +  L S +HPD IY+V W+R+G+
Sbjct: 131 HTKRVGIVTWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDS-LHPDLIYNVSWNRNGS 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L C++C+DK VRII+PR+GT+VAE+++ HEG RP+RA+F++DGK   TGFSRM+ERQ+AL
Sbjct: 190 LFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSERQLAL 249

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD ++LEEP++LQELD+S+G LLPF+DPDT++
Sbjct: 250 WDPENLEEPMALQELDSSNGALLPFYDPDTSV 281



 Score = 43.1 bits (100), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VY+CGKGDSSIRYF+IT E P+
Sbjct: 277  PDTSVVYVCGKGDSSIRYFEITDEPPY 303



 Score = 33.9 bits (76), Expect(3) = e-131
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ +L+ F S++  RGMG +P  GLEV+
Sbjct: 302  PYIHFLNTFTSKEPQRGMGSMPKRGLEVS 330


>ref|XP_543444.2| PREDICTED: similar to Coronin-1C (Coronin-3) (hCRNN4) [Canis
           familiaris].
          Length = 474

 Score =  426 bits (1094), Expect(3) = e-131
 Identities = 192/272 (70%), Positives = 237/272 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ  K DQCY+D+RVS+ TWDS FCAVNP+FVA+I EASGGGAFLVLPL KTGR
Sbjct: 9   KFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGR 68

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK+ P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLTL L EPVV LEG
Sbjct: 69  IDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEG 128

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGIVAWHPTA+NVLLSAGCDN I++W+VGTG A++ L  D+H D IY+V W+R+G+
Sbjct: 129 HSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINL-DDMHSDMIYNVSWNRNGS 187

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           LICT+ +DK+VR+I+PRK  IVAEK++ HEG RP+RA+F++DG    TGFSRM+ERQ+AL
Sbjct: 188 LICTASKDKKVRVIDPRKQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLAL 247

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           W+ K+++EP++L E+DTS+GVLLPF+DPDT++
Sbjct: 248 WNPKNMQEPIALHEMDTSNGVLLPFYDPDTSI 279



 Score = 44.7 bits (104), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + +YLCGKGDSSIRYF+IT E+P+
Sbjct: 275  PDTSIIYLCGKGDSSIRYFEITDESPY 301



 Score = 38.9 bits (89), Expect(3) = e-131
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ YL+ F S++  RGMGY+P  GL+VN
Sbjct: 300  PYVHYLNTFSSKEPQRGMGYMPKRGLDVN 328


>ref|XP_548302.2| PREDICTED: similar to coronin relative protein isoform 1 [Canis
           familiaris].
          Length = 472

 Score =  393 bits (1009), Expect(3) = e-121
 Identities = 180/272 (66%), Positives = 228/272 (83%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ AKADQ YED+RVS+ TWDS FCAVNPKF+A+I EA GGGAF+VLPL+KTGR
Sbjct: 10  KFRHVFGQAAKADQSYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKN P+V GHTAPVLDI WCPHNDNVIAS S+D TVMVW+IPD      + EP++TLEG
Sbjct: 70  VDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTVMVWQIPDYTPVRNITEPIITLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGI++WHPTA+NVLLSAG DNVI++W+VGTG  +L+L  D+HPD I+SV W+ +G+
Sbjct: 130 HSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSL-DDLHPDVIHSVCWNSNGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L+ T+C+DK +RII+PRKG +VAE+   HEG RP+RAVF   G    TGF+RM++R++ L
Sbjct: 189 LLATTCKDKTLRIIDPRKGQVVAERFAAHEGMRPMRAVFTRQGHIFTTGFTRMSQRELGL 248

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD  + EEP++LQE+DTS+GVLLPF+DPD+++
Sbjct: 249 WDPNNFEEPVALQEMDTSNGVLLPFYDPDSSI 280



 Score = 45.8 bits (107), Expect(3) = e-121
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VYLCGKGDSSIRYF+IT E PF
Sbjct: 276  PDSSIVYLCGKGDSSIRYFEITDEPPF 302



 Score = 37.7 bits (86), Expect(3) = e-121
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PF+ YL+ F S++  RGMG++P  GLEV+
Sbjct: 301  PFVHYLNTFSSKEPQRGMGFMPKRGLEVS 329


>ref|XP_864648.1| PREDICTED: similar to coronin, actin binding protein, 1B isoform 2
           [Canis familiaris].
          Length = 434

 Score =  359 bits (922), Expect(3) = e-109
 Identities = 172/272 (63%), Positives = 204/272 (75%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQP K DQCYED+RVS+ TWDS FCAVNP+F+A+I EASGGGAFLVLPLSKTGR
Sbjct: 11  KFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPRFLAVIVEASGGGAFLVLPLSKTGR 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK  P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLT PL EPVV LEG
Sbjct: 71  IDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGIV WHPTA+NVLLSAGCDNV+L+W+VGT   +  L S +HPD IY+V W+R+G+
Sbjct: 131 HTKRVGIVTWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDS-LHPDLIYNVSWNRNGS 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L C++C+DK VRII+PR+GT+VAE                                    
Sbjct: 190 LFCSACKDKSVRIIDPRRGTLVAE------------------------------------ 213

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
               +LEEP++LQELD+S+G LLPF+DPDT++
Sbjct: 214 ----NLEEPMALQELDSSNGALLPFYDPDTSV 241



 Score = 43.1 bits (100), Expect(3) = e-109
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VY+CGKGDSSIRYF+IT E P+
Sbjct: 237  PDTSVVYVCGKGDSSIRYFEITDEPPY 263



 Score = 33.9 bits (76), Expect(3) = e-109
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ +L+ F S++  RGMG +P  GLEV+
Sbjct: 262  PYIHFLNTFTSKEPQRGMGSMPKRGLEVS 290


>ref|XP_868335.1| PREDICTED: similar to coronin, actin binding protein 6 isoform C
           isoform 3 [Canis familiaris].
          Length = 431

 Score =  331 bits (849), Expect(3) = e-102
 Identities = 160/272 (58%), Positives = 201/272 (73%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ AKADQ YED+RVS+ TWDS FCAVNPKF+A+I EA GGGAF+VLPL+KTGR
Sbjct: 10  KFRHVFGQAAKADQSYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKN P+V GHTAPVLDI WCPHNDNVIAS S+D TVMVW+IPD      + EP++TLEG
Sbjct: 70  VDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTVMVWQIPDYTPVRNITEPIITLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGI++WHPTA+NVLLSAG DNVI++W+VGTG  +L+L  D+HPD I+SV W+ +G+
Sbjct: 130 HSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSL-DDLHPDVIHSVCWNSNGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L+ T+C+DK +RII+PRKG +VA                                     
Sbjct: 189 LLATTCKDKTLRIIDPRKGQVVA------------------------------------- 211

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
               + EEP++LQE+DTS+GVLLPF+DPD+++
Sbjct: 212 ---NNFEEPVALQEMDTSNGVLLPFYDPDSSI 240



 Score = 45.8 bits (107), Expect(3) = e-102
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VYLCGKGDSSIRYF+IT E PF
Sbjct: 236  PDSSIVYLCGKGDSSIRYFEITDEPPF 262



 Score = 37.7 bits (86), Expect(3) = e-102
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PF+ YL+ F S++  RGMG++P  GLEV+
Sbjct: 261  PFVHYLNTFSSKEPQRGMGFMPKRGLEVS 289


>ref|XP_544743.2| PREDICTED: similar to Coronin-2B (Coronin-like protein C) (ClipinC)
           (Protein FC96) [Canis familiaris].
          Length = 501

 Score =  264 bits (675), Expect(3) = 1e-77
 Identities = 125/273 (45%), Positives = 186/273 (68%), Gaps = 1/273 (0%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFR+V+G+ A  + C++ + +++   D+ FCAVN +F+A++ E++GGG+FLV+PL +TGR
Sbjct: 37  KFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNARFLAIVTESAGGGSFLVIPLEQTGR 96

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           ++ N P VCGH   VLDI W P  DN+IAS SED +V +WEIP+GGL   + E ++ L G
Sbjct: 97  IEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLELHG 156

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H++RVG+V WHPT  N+L SAG D  +L+W++  G  V  +  D H D I  + ++ DG+
Sbjct: 157 HSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDVGEPVKMI--DCHSDVILCMSFNTDGS 214

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNERQVA 859
           L+ T+C+DK++R+IEPR G ++ E +  +   R  R VF+ + K+   TG SR N RQ+A
Sbjct: 215 LLTTTCKDKKLRVIEPRSGRVLQEANCKNH--RVNRVVFLGNMKRLLTTGVSRWNTRQIA 272

Query: 860 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           LWD + L  PL  +E+D  SG+L PF+D DT M
Sbjct: 273 LWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHM 305



 Score = 35.4 bits (80), Expect(3) = 1e-77
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAPF 1023
            +YL GKGD +IRY++I++E PF
Sbjct: 306  LYLAGKGDGNIRYYEISTEKPF 327



 Score = 30.8 bits (68), Expect(3) = 1e-77
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PFL+YL  F S    +G+G +P  GL+V+
Sbjct: 326  PFLSYLMEFRSPAPQKGLGVMPKHGLDVS 354


>ref|XP_538747.2| PREDICTED: similar to coronin, actin binding protein, 2A [Canis
           familiaris].
          Length = 540

 Score =  254 bits (649), Expect(3) = 2e-72
 Identities = 129/278 (46%), Positives = 182/278 (65%), Gaps = 6/278 (2%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFG+PA  + CY+ V ++ +  D+ FCAVNP F+A++ E S GGAF V+PL +TG+
Sbjct: 32  KFRHVFGKPASKENCYDSVPITHSVQDNHFCAVNPYFIAVVTECSCGGAFFVIPLHQTGK 91

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +D + P VCGH   VLDI W P ND  IAS SED T+ +W+IP   LT  L      L G
Sbjct: 92  LDPHYPKVCGHKGNVLDIKWNPFNDFEIASCSEDTTIKIWDIPKQLLTKNLTACKKELIG 151

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL-----TLGSDVHPDTIYSVDW 667
           HT+RVG+V WHPTA N+L S+G D  ++VW++ T  +V+     T+G   H   I S+ +
Sbjct: 152 HTRRVGLVEWHPTAANILFSSGYDYKVMVWNLDTKESVIMNPVRTIG--CHQGVILSMSF 209

Query: 668 SRDGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSD-GKKSDTGFSRMN 844
           + +G+L+ T+C+D+++RI++PR G ++ E +    G R  + +F+ D  K   TG SR N
Sbjct: 210 NTNGSLLATTCKDRKIRILDPRAGAVLQEAN--CTGHRANKVLFLGDLNKLLSTGTSRWN 267

Query: 845 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
            RQ+A+WD  +L  PLS  +LD SSGVL PF+D DT M
Sbjct: 268 NRQLAVWDQDNLSVPLSEVDLDGSSGVLFPFYDVDTNM 305



 Score = 31.6 bits (70), Expect(3) = 2e-72
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +1

Query: 952  NNVYLCGKGDSSIRYFQITSEAP 1020
            N +Y+ GKGD +IRY++++++ P
Sbjct: 304  NMLYVVGKGDGNIRYYEVSADKP 326



 Score = 27.7 bits (60), Expect(3) = 2e-72
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEV 1100
            P L+YL+ + S    +G+G +P  GL+V
Sbjct: 326  PHLSYLTEYRSLTPQKGIGIMPKRGLDV 353


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,174,405
Number of extensions: 1509894
Number of successful extensions: 7409
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 7001
Number of HSP's successfully gapped: 127
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012141
         (1105 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001929380.1| PREDICTED: coronin-1C [Sus scrofa].               425   e-131
Alignment   gi|XP_003122508.2| PREDICTED: coronin-1B-like [Sus scrofa].          427   e-130
Alignment   gi|XP_003360880.1| PREDICTED: LOW QUALITY PROTEIN: coronin-1A-l...   338   3e-93
Alignment   gi|XP_003361333.1| PREDICTED: coronin-6-like [Sus scrofa].           306   1e-83
Alignment   gi|XP_003121805.1| PREDICTED: coronin-2B [Sus scrofa].               264   4e-77
Alignment   gi|XP_003122082.1| PREDICTED: coronin-2A-like [Sus scrofa].          261   2e-75
Alignment   gi|XP_003362227.1| PREDICTED: coronin-1C-like, partial [Sus scr...   180   8e-58
Alignment   gi|XP_003359180.1| PREDICTED: hypothetical protein LOC100620779...   178   5e-45
Alignment   gi|XP_003124691.2| PREDICTED: coronin-7-like [Sus scrofa].           145   6e-37
Alignment   gi|XP_003131831.2| PREDICTED: coronin-6-like [Sus scrofa].            89   2e-30

>ref|XP_001929380.1| PREDICTED: coronin-1C [Sus scrofa].
          Length = 474

 Score =  425 bits (1093), Expect(3) = e-131
 Identities = 192/272 (70%), Positives = 236/272 (86%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ  K DQCY+D+RVS+ TWDS FCAVNP+FVA+I EASGGGAFLVLPL KTGR
Sbjct: 9   KFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGR 68

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK+ P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLTL L EPVV LEG
Sbjct: 69  IDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEG 128

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGIVAWHPTA+NVLLSAGCDN I++W+VGTG A++ L  D+H D IY+V W+R+G+
Sbjct: 129 HSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINL-DDMHSDMIYNVSWNRNGS 187

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           LICT+ +DK+VR+I+PRK  I+AEK++ HEG RP+RA+F++DG    TGFSRM+ERQ+AL
Sbjct: 188 LICTASKDKKVRVIDPRKQEIIAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLAL 247

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           W+ K +EEP++L E+DTS+GVLLPF+DPDT++
Sbjct: 248 WNPKTMEEPIALHEMDTSNGVLLPFYDPDTSI 279



 Score = 44.7 bits (104), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + +YLCGKGDSSIRYF+IT E+P+
Sbjct: 275  PDTSIIYLCGKGDSSIRYFEITDESPY 301



 Score = 38.9 bits (89), Expect(3) = e-131
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ YL+ F S++  RGMGY+P  GL+VN
Sbjct: 300  PYVHYLNTFSSKEPQRGMGYMPKRGLDVN 328


>ref|XP_003122508.2| PREDICTED: coronin-1B-like [Sus scrofa].
          Length = 469

 Score =  427 bits (1099), Expect(3) = e-130
 Identities = 193/272 (70%), Positives = 234/272 (86%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQP K DQCYED+RVS+ TWDS FCAVNPKF+A+I EASGGGAFLVLPLSKTGR
Sbjct: 10  KFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFLVLPLSKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK  P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLT PL EPVV LEG
Sbjct: 70  IDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPEHGLTSPLTEPVVVLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGI+ WHPTA+NVLLSAGCDNV+L+W+VGT   +  L S +HPD IY++ W+R+G+
Sbjct: 130 HTKRVGIITWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDS-LHPDLIYNISWNRNGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L C++C+DK VRII+PR+GT+VAE+++ HEG RP+RA+F++DGK   TGFSRM+ERQ+AL
Sbjct: 189 LFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSERQLAL 248

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD  +  EP++LQELD+S+G LLPF+DPDT +
Sbjct: 249 WDPVNFGEPMALQELDSSNGALLPFYDPDTNV 280



 Score = 45.8 bits (107), Expect(3) = e-130
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  N VY+CGKGDSSIRYF+IT E+P+
Sbjct: 276  PDTNVVYVCGKGDSSIRYFEITDESPY 302



 Score = 33.9 bits (76), Expect(3) = e-130
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ +L+ F S++  RGMG +P  GLEV+
Sbjct: 301  PYIHFLNTFTSKEPQRGMGSMPKRGLEVS 329


>ref|XP_003360880.1| PREDICTED: LOW QUALITY PROTEIN: coronin-1A-like, partial [Sus
           scrofa].
          Length = 400

 Score =  338 bits (867), Expect = 3e-93
 Identities = 172/207 (83%), Positives = 173/207 (83%), Gaps = 2/207 (0%)
 Frame = +2

Query: 185 CYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGRVDKNAPMVCGHTAP 364
           CYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGRVDKNAPMVCGHTAP
Sbjct: 51  CYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGRVDKNAPMVCGHTAP 110

Query: 365 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEGHTKRVGIVAW--HP 538
           VLDIAWCPHNDNVIASGSEDCTVMV     GG+ L          G  K  G   W  HP
Sbjct: 111 VLDIAWCPHNDNVIASGSEDCTVMV----SGGVVL----------GRGKAQGFXYWGHHP 156

Query: 539 TAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGALICTSCRDKRVR 718
                    GCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGALICTSCRDKRVR
Sbjct: 157 ---------GCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGALICTSCRDKRVR 207

Query: 719 IIEPRKGTIVAEKDRPHEGTRPVRAVF 799
           IIEPRKGTIVAEKDRPHEGTRPVRAVF
Sbjct: 208 IIEPRKGTIVAEKDRPHEGTRPVRAVF 234


>ref|XP_003361333.1| PREDICTED: coronin-6-like [Sus scrofa].
          Length = 570

 Score =  306 bits (785), Expect = 1e-83
 Identities = 148/250 (59%), Positives = 188/250 (75%), Gaps = 8/250 (3%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ AKADQ YED+RVS+ TWDS FCAVNPKF+A+I EA GGGAF+VLPL+KTGR
Sbjct: 10  KFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKN P+V GHTAPVLDI WCPHNDNVIAS S+D T+MVW+IPD      + EP++TLEG
Sbjct: 70  VDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGI++WHPTA+NVLLSAG DNVI++W+VGTG  +L+L  D+HPD I+S       +
Sbjct: 130 HSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSL-DDIHPDVIHSXXXXXXXS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGT--------RPVRAVFVSDGKKSDTGFSR 838
           L+ T+C+DK +RII+PRKG +VA + R              P RAV      +++ G + 
Sbjct: 189 LLATTCKDKTLRIIDPRKGQVVAARPRREHALAPSLGQPGAPSRAVAAPKRAEAEQG-AP 247

Query: 839 MNERQVALWD 868
           + +R++ LWD
Sbjct: 248 VCQRELGLWD 257



 Score = 45.8 bits (107), Expect(3) = 3e-12
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VYLCGKGDSSIRYF+IT E PF
Sbjct: 387  PDSSIVYLCGKGDSSIRYFEITEEPPF 413



 Score = 36.6 bits (83), Expect(3) = 3e-12
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PF+ YL+ F S++  RGMG++P  GL+V+
Sbjct: 412  PFVHYLNTFSSKEPQRGMGFMPKRGLDVS 440



 Score = 26.6 bits (57), Expect(3) = 3e-12
 Identities = 9/14 (64%), Positives = 14/14 (100%)
 Frame = +2

Query: 917 SGVLLPFFDPDTTM 958
           +GVLLPF+DPD+++
Sbjct: 378 NGVLLPFYDPDSSI 391


>ref|XP_003121805.1| PREDICTED: coronin-2B [Sus scrofa].
          Length = 480

 Score =  264 bits (675), Expect(3) = 4e-77
 Identities = 125/273 (45%), Positives = 186/273 (68%), Gaps = 1/273 (0%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFR+V+G+ A  + C++ + +++   D+ FCAVN +F+A++ E++GGG+FLV+PL +TGR
Sbjct: 16  KFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNARFLAIVTESAGGGSFLVIPLEQTGR 75

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           ++ N P VCGH   VLDI W P  DN+IAS SED +V +WEIP+GGL   + E ++ L G
Sbjct: 76  IEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLELHG 135

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H++RVG+V WHPT  N+L SAG D  +L+W++  G  V  +  D H D I  + ++ DG+
Sbjct: 136 HSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDVGEPVKMI--DCHSDVILCMSFNTDGS 193

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNERQVA 859
           L+ T+C+DK++R+IEPR G ++ E +  +   R  R VF+ + K+   TG SR N RQ+A
Sbjct: 194 LLTTTCKDKKLRVIEPRSGRVLQEANCKNH--RVNRVVFLGNMKRLLTTGVSRWNTRQIA 251

Query: 860 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           LWD + L  PL  +E+D  SG+L PF+D DT M
Sbjct: 252 LWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHM 284



 Score = 34.3 bits (77), Expect(3) = 4e-77
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAPF 1023
            +YL GKGD +IRY++I++E P+
Sbjct: 285  LYLAGKGDGNIRYYEISTEKPY 306



 Score = 29.6 bits (65), Expect(3) = 4e-77
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P+L+YL  F S    +G+G +P  GL+V+
Sbjct: 305  PYLSYLMEFRSPAPQKGLGVMPKHGLDVS 333


>ref|XP_003122082.1| PREDICTED: coronin-2A-like [Sus scrofa].
          Length = 525

 Score =  261 bits (666), Expect(3) = 2e-75
 Identities = 125/276 (45%), Positives = 185/276 (67%), Gaps = 4/276 (1%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFG+PA  + CY+ V ++++  D+ FCAVNP F+A++ E +GGGAFLV+PL +TG+
Sbjct: 11  KFRHVFGKPASKENCYDSVPITRSVHDNHFCAVNPHFIAVVTECAGGGAFLVIPLHQTGK 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +D + P VCGH   VLD+ W P +D  IAS SED T+ +W+IP   +T  L      L G
Sbjct: 71  LDPHYPKVCGHRGNVLDVKWNPFDDFEIASCSEDATIKIWDIPKQLMTKNLTACKKELVG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL---TLGSDVHPDTIYSVDWSR 673
           H +RVG+V WHPTA N+L S+G D  ++VW++ T  +V+         H D I S+ ++ 
Sbjct: 131 HARRVGLVEWHPTAANILFSSGYDYKVMVWNLDTKESVIMSPVRTITCHQDVILSMSFNT 190

Query: 674 DGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNER 850
           +G+L+ T+C+D+++R+++PR G ++ E    ++G R  + +F+ + KK   TG SR N R
Sbjct: 191 NGSLLATACKDRKIRVLDPRAGAVLQEAS--YKGHRANKVLFLGNLKKLLSTGTSRWNNR 248

Query: 851 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           Q+ALWD   L  PL+ ++LD SSGVL PF+DPDT M
Sbjct: 249 QMALWDQDDLSVPLTEEDLDGSSGVLFPFYDPDTNM 284



 Score = 32.7 bits (73), Expect(3) = 2e-75
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAP 1020
            P  N +Y+ GKGD +IRY++++++ P
Sbjct: 280  PDTNMLYVVGKGDGNIRYYEVSADKP 305



 Score = 28.9 bits (63), Expect(3) = 2e-75
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P L YL+ + S +  +G+G +P  GLEV+
Sbjct: 305  PHLNYLTEYRSYNPQKGIGVMPKRGLEVS 333


>ref|XP_003362227.1| PREDICTED: coronin-1C-like, partial [Sus scrofa].
          Length = 332

 Score =  180 bits (456), Expect(3) = 8e-58
 Identities = 78/134 (58%), Positives = 112/134 (83%)
 Frame = +2

Query: 557 LSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGALICTSCRDKRVRIIEPRK 736
           L +GCDN I++W+VGTG A++ L  D+H D IY+V W+R+G+LICT+ +DK+VR+I+PRK
Sbjct: 5   LLSGCDNAIIIWNVGTGEALINL-DDMHSDMIYNVSWNRNGSLICTASKDKKVRVIDPRK 63

Query: 737 GTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVALWDTKHLEEPLSLQELDTS 916
             I+ EK++ HEG RP+RA+F++DG    TGFSRM+ERQ+ALW+ K +EEP++L E+DTS
Sbjct: 64  QEIIQEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNPKTMEEPIALHEMDTS 123

Query: 917 SGVLLPFFDPDTTM 958
           +GVLLPF+DPDT++
Sbjct: 124 NGVLLPFYDPDTSI 137



 Score = 44.7 bits (104), Expect(3) = 8e-58
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + +YLCGKGDSSIRYF+IT E+P+
Sbjct: 133  PDTSIIYLCGKGDSSIRYFEITDESPY 159



 Score = 38.9 bits (89), Expect(3) = 8e-58
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ YL+ F S++  RGMGY+P  GL+VN
Sbjct: 158  PYVHYLNTFSSKEPQRGMGYMPKRGLDVN 186


>ref|XP_003359180.1| PREDICTED: hypothetical protein LOC100620779 [Sus scrofa].
          Length = 442

 Score =  178 bits (451), Expect = 5e-45
 Identities = 80/99 (80%), Positives = 87/99 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ  K DQCY+D+RVS+ TWDS FCAVNP+FVA+I EASGGGAFLVLPL KTGR
Sbjct: 34  KFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGR 93

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 439
           +DK+ P VCGHT PVLDI WCPHND VIASGSEDCTVMV
Sbjct: 94  IDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMV 132


>ref|XP_003124691.2| PREDICTED: coronin-7-like [Sus scrofa].
          Length = 928

 Score =  145 bits (365), Expect(2) = 6e-37
 Identities = 93/277 (33%), Positives = 137/277 (49%), Gaps = 5/277 (1%)
 Frame = +2

Query: 143  KFRHVFGQPAKADQCYEDVRVSQTTW---DSGFCAVNPKFVALICEASGGGAFLVLPLSK 313
            KFRH  G     D    +++    T      GFCA   +    +   S GG   VL L K
Sbjct: 475  KFRHTQGTVLHRDSHITNLKGLNLTTPGESDGFCANRLRVAVPLL--SSGGQVAVLELRK 532

Query: 314  TGRVDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVT 493
             GR+   A     + A V D+AW P + + +A   ED  + +W +P  GL   L  P   
Sbjct: 533  PGRLPDTALPTLQNGAAVTDLAWDPFDLHRLAVAGEDARIRLWRVPPEGLEEVLTTPEAV 592

Query: 494  LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSR 673
            L GHT+++  + +HP A +VL S+  D  I +WD+  G   L L    H D I+ + WS 
Sbjct: 593  LTGHTEKIYSLRFHPLAADVLASSSYDLTIRIWDLQAGVERLRLQG--HRDQIFGLAWSP 650

Query: 674  DGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGK-KSDTGFSRMNER 850
            +G  + T C+D R+R+ EPR      ++    EG R  R V+V DG     +GF   +ER
Sbjct: 651  NGQQLATVCKDGRLRVYEPRSSPEPLQEGPGPEGARGARVVWVCDGHCLLVSGFDSRSER 710

Query: 851  QVALWDTKHLEE-PLSLQELDTSSGVLLPFFDPDTTM 958
            Q+ L+  + L   PL++  LD +   LLP +DPDT++
Sbjct: 711  QLLLFSAEALASGPLAVLGLDVAPSTLLPSYDPDTSL 747



 Score = 27.7 bits (60), Expect(2) = 6e-37
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPFWPIC 1035
            P  + V L GKGD+ +  +++  EAPF+  C
Sbjct: 743  PDTSLVLLTGKGDTRVFLYELLPEAPFFLEC 773



 Score =  131 bits (330), Expect = 6e-31
 Identities = 85/276 (30%), Positives = 135/276 (48%), Gaps = 6/276 (2%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRH   +P + +    D+R             +   +A I +  G     ++PL   G 
Sbjct: 8   KFRHTEARPPRREAWISDIRAGTAPSCGNHIKSSCSLIAFISDRPG--VLGIVPLEGQGE 65

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
             ++   +  H+  V D+ + P +D ++A+ S D TV +W +P  G  LP   P + L  
Sbjct: 66  DKRHVTHLGCHSDLVTDLDFSPFDDFLLATASADRTVKLWRLPAPGQALP-SGPGLVLGP 124

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
               V ++ +HP+A  VLLSA     + VWD      +  L +  H D + S  WS+DGA
Sbjct: 125 EDVPVEVLQFHPSADGVLLSAA-GKALKVWDAARQQPLTELAA--HGDLVQSAIWSQDGA 181

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNERQVA 859
           L+ T+C+DK++RI +PR     ++  + HE +R  R V+    +    TGF++M ER+V 
Sbjct: 182 LVGTTCKDKQLRIFDPRAKPEASQSTQAHENSRDGRLVWTGTREHLVSTGFNQMREREVK 241

Query: 860 LWDTKHLEEPLSLQELDTSS-----GVLLPFFDPDT 952
           LWD +     L+   LD S      G L+P  DPD+
Sbjct: 242 LWDIRLFSGALASLTLDASPRYERLGSLMPLLDPDS 277


>ref|XP_003131831.2| PREDICTED: coronin-6-like [Sus scrofa].
          Length = 381

 Score = 89.0 bits (219), Expect(3) = 2e-30
 Identities = 38/69 (55%), Positives = 55/69 (79%)
 Frame = +2

Query: 752 EKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVALWDTKHLEEPLSLQELDTSSGVLL 931
           E+   HEG RP+RAVF   G+   TGF+RM++R++ LWD  + EEP++LQE+DTS+GVLL
Sbjct: 121 ERFAAHEGMRPMRAVFTRQGQIFTTGFTRMSQRELGLWDPNNFEEPVALQEMDTSNGVLL 180

Query: 932 PFFDPDTTM 958
           PF+DPD+++
Sbjct: 181 PFYDPDSSI 189



 Score = 45.8 bits (107), Expect(3) = 2e-30
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VYLCGKGDSSIRYF+IT E PF
Sbjct: 185  PDSSIVYLCGKGDSSIRYFEITEEPPF 211



 Score = 36.6 bits (83), Expect(3) = 2e-30
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PF+ YL+ F S++  RGMG++P  GL+V+
Sbjct: 210  PFVHYLNTFSSKEPQRGMGFMPKRGLDVS 238


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,707,427
Number of extensions: 1034582
Number of successful extensions: 4657
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 4464
Number of HSP's successfully gapped: 77
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012141
         (1105 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034028.1| coronin-1A [Mus musculus].                           540   e-169
Alignment   gi|NP_035909.2| coronin-1C [Mus musculus].                           427   e-131
Alignment   gi|NP_035908.1| coronin-1B [Mus musculus].                           431   e-130
Alignment   gi|NP_624354.1| coronin-6 isoform A [Mus musculus].                  408   e-125
Alignment   gi|NP_624356.1| coronin-6 isoform B [Mus musculus].                  389   e-120
Alignment   gi|NP_624355.1| coronin-6 isoform C [Mus musculus].                  329   e-102
Alignment   gi|NP_780693.2| coronin-2B [Mus musculus].                           265   3e-77
Alignment   gi|NP_001158276.1| coronin-2A [Mus musculus].                        261   1e-74
Alignment   gi|NP_849224.1| coronin-2A [Mus musculus].                           261   1e-74
Alignment   gi|NP_084481.3| coronin-7 [Mus musculus].                            151   1e-38

>ref|NP_034028.1| coronin-1A [Mus musculus].
          Length = 461

 Score =  540 bits (1390), Expect(3) = e-169
 Identities = 255/272 (93%), Positives = 263/272 (96%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKF+ALICEASGGGAFLVLPL KTGR
Sbjct: 10  KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKN P+VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL LPLREPV+TLEG
Sbjct: 70  VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG DVHPDTIYSVDWSRDGA
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           LICTSCRDKRVR+IEPRKGT+VAEKDRPHEGTRPV AVFVS+GK   TGFSRM+ERQVAL
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL 249

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WDTKHLEEPLSLQELDTSSGVLLPFFDPDT +
Sbjct: 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI 281



 Score = 50.8 bits (120), Expect(3) = e-169
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  N VYLCGKGDSSIRYF+ITSEAPF
Sbjct: 277  PDTNIVYLCGKGDSSIRYFEITSEAPF 303



 Score = 45.4 bits (106), Expect(3) = e-169
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PFL YLS F S++S RGMGY+P  GLEVN
Sbjct: 302  PFLHYLSMFSSKESQRGMGYMPKRGLEVN 330


>ref|NP_035909.2| coronin-1C [Mus musculus].
          Length = 474

 Score =  427 bits (1097), Expect(3) = e-131
 Identities = 193/272 (70%), Positives = 237/272 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ  K DQCY+D+RVS+ TWDS FCAVNP+FVA+I EASGGGAFLVLPL KTGR
Sbjct: 9   KFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGR 68

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK+ P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLTL L EPVV LEG
Sbjct: 69  IDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEG 128

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGIVAWHPTA+NVLLSAGCDN I++W+VGTG A++ L  D+H D IY+V WSR+G+
Sbjct: 129 HSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINL-DDMHSDMIYNVSWSRNGS 187

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           LICT+ +DK+VR+I+PRK  IVAEK++ HEG RP+RA+F++DG    TGFSRM+ERQ+AL
Sbjct: 188 LICTASKDKKVRVIDPRKQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLAL 247

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           W+ K+++EP++L E+DTS+GVLLPF+DPDT++
Sbjct: 248 WNPKNMQEPIALHEMDTSNGVLLPFYDPDTSI 279



 Score = 44.7 bits (104), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + +YLCGKGDSSIRYF+IT E+P+
Sbjct: 275  PDTSIIYLCGKGDSSIRYFEITDESPY 301



 Score = 38.9 bits (89), Expect(3) = e-131
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ YL+ F S++  RGMGY+P  GL+VN
Sbjct: 300  PYVHYLNTFSSKEPQRGMGYMPKRGLDVN 328


>ref|NP_035908.1| coronin-1B [Mus musculus].
          Length = 484

 Score =  431 bits (1107), Expect(3) = e-130
 Identities = 193/272 (70%), Positives = 237/272 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQP K DQCYED+RVS+ TWDS FCAVNPKF+A+I EASGGGAF+VLPL+KTGR
Sbjct: 11  KFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFMVLPLNKTGR 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK  P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLT PL EPVV LEG
Sbjct: 71  IDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGI+ WHPTA+NVLLSAGCDNV+L+W+VGT   +  L S +HPD IY+V W+ +G+
Sbjct: 131 HTKRVGIITWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDS-LHPDLIYNVSWNHNGS 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L C++C+DK VRII+PR+GT+VAE+++ HEG RP+RA+F++DGK   TGFSRM+ERQ+AL
Sbjct: 190 LFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSERQLAL 249

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD ++LEEP++LQELD+S+G LLPF+DPDT++
Sbjct: 250 WDPENLEEPMALQELDSSNGALLPFYDPDTSV 281



 Score = 43.1 bits (100), Expect(3) = e-130
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VY+CGKGDSSIRYF+IT E P+
Sbjct: 277  PDTSVVYVCGKGDSSIRYFEITDEPPY 303



 Score = 33.9 bits (76), Expect(3) = e-130
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ +L+ F S++  RGMG +P  GLEV+
Sbjct: 302  PYIHFLNTFTSKEPQRGMGSMPKRGLEVS 330


>ref|NP_624354.1| coronin-6 isoform A [Mus musculus].
          Length = 471

 Score =  408 bits (1048), Expect(3) = e-125
 Identities = 187/272 (68%), Positives = 232/272 (85%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ AKADQ YED+RVS+ TWDS FCAVNPKF+A+I EA GGGAF+VLPL+KTGR
Sbjct: 10  KFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKN P+V GHT PVLDI WCPHNDNVIAS S+D TVMVW+IPD      + EPV+TLEG
Sbjct: 70  VDKNYPLVTGHTGPVLDIDWCPHNDNVIASASDDTTVMVWQIPDYTPVRNITEPVITLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGI++WHPTA+NVLLSAG DNVI++W+VGTG  +L+L  D+HPD I+SV W+ +G+
Sbjct: 130 HSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSL-DDIHPDVIHSVCWNSNGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L+ T+C+DK +RII+PRK  +VAE+ RPHEG RP+RAVF +DGK   TGFSRM+ERQ+AL
Sbjct: 189 LLATTCKDKTLRIIDPRKSQVVAERARPHEGARPLRAVFTADGKLLSTGFSRMSERQLAL 248

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD  + EEP++LQE+DTS+GVLLPF+DPD+++
Sbjct: 249 WDPNNFEEPVALQEMDTSNGVLLPFYDPDSSI 280



 Score = 45.8 bits (107), Expect(3) = e-125
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VYLCGKGDSSIRYF+IT E PF
Sbjct: 276  PDSSIVYLCGKGDSSIRYFEITEEPPF 302



 Score = 36.6 bits (83), Expect(3) = e-125
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PF+ YL+ F S++  RGMG++P  GL+V+
Sbjct: 301  PFVHYLNTFSSKEPQRGMGFMPKRGLDVS 329


>ref|NP_624356.1| coronin-6 isoform B [Mus musculus].
          Length = 471

 Score =  389 bits (999), Expect(3) = e-120
 Identities = 179/272 (65%), Positives = 226/272 (83%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ AKADQ YED+RVS+ TWDS FCAVNPKF+A+I EA GGGAF+VLPL+KTGR
Sbjct: 10  KFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKN P+V GHT PVLDI WCPHNDNVIAS S+D TVMVW+IPD      + EPV+TLEG
Sbjct: 70  VDKNYPLVTGHTGPVLDIDWCPHNDNVIASASDDTTVMVWQIPDYTPVRNITEPVITLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGI++WHPTA+NVLLSAG DNVI++W+VGTG  +L+L  D+HPD I+SV W+ +G+
Sbjct: 130 HSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSL-DDIHPDVIHSVCWNSNGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L+ T+C+DK +RII+PRK  +VAE+   HEG RP+RAVF   G    TGF+RM++R++ L
Sbjct: 189 LLATTCKDKTLRIIDPRKSQVVAERFAAHEGMRPMRAVFTRLGHIFTTGFTRMSQRELGL 248

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD  + EEP++LQE+DTS+GVLLPF+DPD+++
Sbjct: 249 WDPNNFEEPVALQEMDTSNGVLLPFYDPDSSI 280



 Score = 45.8 bits (107), Expect(3) = e-120
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VYLCGKGDSSIRYF+IT E PF
Sbjct: 276  PDSSIVYLCGKGDSSIRYFEITEEPPF 302



 Score = 36.6 bits (83), Expect(3) = e-120
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PF+ YL+ F S++  RGMG++P  GL+V+
Sbjct: 301  PFVHYLNTFSSKEPQRGMGFMPKRGLDVS 329


>ref|NP_624355.1| coronin-6 isoform C [Mus musculus].
          Length = 431

 Score =  329 bits (843), Expect(3) = e-102
 Identities = 159/272 (58%), Positives = 199/272 (73%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ AKADQ YED+RVS+ TWDS FCAVNPKF+A+I EA GGGAF+VLPL+KTGR
Sbjct: 10  KFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKN P+V GHT PVLDI WCPHNDNVIAS S+D TVMVW+IPD      + EPV+TLEG
Sbjct: 70  VDKNYPLVTGHTGPVLDIDWCPHNDNVIASASDDTTVMVWQIPDYTPVRNITEPVITLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGI++WHPTA+NVLLSAG DNVI++W+VGTG  +L+L  D+HPD I+SV W+ +G+
Sbjct: 130 HSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSL-DDIHPDVIHSVCWNSNGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L+ T+C+DK +RII+PRK  +VA                                     
Sbjct: 189 LLATTCKDKTLRIIDPRKSQVVA------------------------------------- 211

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
               + EEP++LQE+DTS+GVLLPF+DPD+++
Sbjct: 212 ---NNFEEPVALQEMDTSNGVLLPFYDPDSSI 240



 Score = 45.8 bits (107), Expect(3) = e-102
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VYLCGKGDSSIRYF+IT E PF
Sbjct: 236  PDSSIVYLCGKGDSSIRYFEITEEPPF 262



 Score = 36.6 bits (83), Expect(3) = e-102
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PF+ YL+ F S++  RGMG++P  GL+V+
Sbjct: 261  PFVHYLNTFSSKEPQRGMGFMPKRGLDVS 289


>ref|NP_780693.2| coronin-2B [Mus musculus].
          Length = 480

 Score =  265 bits (677), Expect(3) = 3e-77
 Identities = 125/273 (45%), Positives = 186/273 (68%), Gaps = 1/273 (0%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFR+V+G+ A  + C++ + +++   D+ FCAVN +F+A++ E++GGG+FLV+PL +TGR
Sbjct: 16  KFRNVYGKAANREHCFDGIPITKNVHDNHFCAVNARFLAIVTESAGGGSFLVIPLEQTGR 75

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           ++ N P VCGH   VLDI W P  DN+IAS SED +V +WEIPDGGL   + E ++ L G
Sbjct: 76  IEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPDGGLKRNMTEALLELHG 135

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H++RVG+V WHPT  N+L SAG D  +L+W++  G  V  +  D H D I  + ++ DG+
Sbjct: 136 HSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDIGEPVKMI--DCHTDVILCMSFNTDGS 193

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNERQVA 859
           L+ T+C+DK++R+IEPR G ++ E +  +   R  R VF+ + K+   TG SR N RQ+A
Sbjct: 194 LLTTTCKDKKLRVIEPRSGRVLQEANCKNH--RVNRVVFLGNMKRLLTTGVSRWNTRQIA 251

Query: 860 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           LWD + L  P+  +E+D  SG+L PF+D DT M
Sbjct: 252 LWDQEDLSMPMIEEEIDGLSGLLFPFYDADTHM 284



 Score = 34.3 bits (77), Expect(3) = 3e-77
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAPF 1023
            +YL GKGD +IRY++I++E P+
Sbjct: 285  LYLAGKGDGNIRYYEISTEKPY 306



 Score = 29.6 bits (65), Expect(3) = 3e-77
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P+L+YL  F S    +G+G +P  GL+V+
Sbjct: 305  PYLSYLMEFRSPAPQKGLGVMPKHGLDVS 333


>ref|NP_001158276.1| coronin-2A [Mus musculus].
          Length = 524

 Score =  261 bits (666), Expect(3) = 1e-74
 Identities = 128/276 (46%), Positives = 185/276 (67%), Gaps = 4/276 (1%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHV+G+PA  + CY+ V ++++  D+ FCAVNP F+A++ E +GGGAFLV+PL +TG+
Sbjct: 11  KFRHVYGKPASKENCYDSVPITRSVHDNHFCAVNPHFIAVVTECAGGGAFLVIPLHQTGK 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +D + P VCGH   VLDI W P ND  IAS SED T+ +W IP   LT  L      L G
Sbjct: 71  LDPHYPKVCGHRGNVLDIKWNPFNDFEIASCSEDATIKIWNIPKQLLTRNLTTYRKELIG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL---TLGSDVHPDTIYSVDWSR 673
           H +RVG+V WHPT  N+L SAG D  ++VW++ T  +V+       + H D I S+ ++ 
Sbjct: 131 HARRVGLVEWHPTTANILFSAGYDYKVMVWNLDTKDSVIAGPVKTINCHQDVILSMSFNT 190

Query: 674 DGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNER 850
           +G+L+ T+C+D+++RI++PR G ++ E    ++G R  + +F+   KK   TG SR N R
Sbjct: 191 NGSLLATTCKDRKIRIVDPRLGIVLQEAS--YKGHRANKVLFLGSLKKLLSTGTSRWNNR 248

Query: 851 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           Q+ALWD ++L  PL+ ++LD SSGVL PFFD DT+M
Sbjct: 249 QMALWDQENLSVPLTEEDLDGSSGVLFPFFDSDTSM 284



 Score = 30.8 bits (68), Expect(3) = 1e-74
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAP 1020
            +Y+ GKGD +IRY++++ E P
Sbjct: 285  LYIVGKGDGNIRYYEVSMEKP 305



 Score = 28.5 bits (62), Expect(3) = 1e-74
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P L YL+ + S +  +G+G +P  GL+V+
Sbjct: 305  PHLTYLTEYRSYNPQKGIGIMPKRGLDVS 333


>ref|NP_849224.1| coronin-2A [Mus musculus].
          Length = 524

 Score =  261 bits (666), Expect(3) = 1e-74
 Identities = 128/276 (46%), Positives = 185/276 (67%), Gaps = 4/276 (1%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHV+G+PA  + CY+ V ++++  D+ FCAVNP F+A++ E +GGGAFLV+PL +TG+
Sbjct: 11  KFRHVYGKPASKENCYDSVPITRSVHDNHFCAVNPHFIAVVTECAGGGAFLVIPLHQTGK 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +D + P VCGH   VLDI W P ND  IAS SED T+ +W IP   LT  L      L G
Sbjct: 71  LDPHYPKVCGHRGNVLDIKWNPFNDFEIASCSEDATIKIWNIPKQLLTRNLTTYRKELIG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL---TLGSDVHPDTIYSVDWSR 673
           H +RVG+V WHPT  N+L SAG D  ++VW++ T  +V+       + H D I S+ ++ 
Sbjct: 131 HARRVGLVEWHPTTANILFSAGYDYKVMVWNLDTKDSVIAGPVKTINCHQDVILSMSFNT 190

Query: 674 DGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNER 850
           +G+L+ T+C+D+++RI++PR G ++ E    ++G R  + +F+   KK   TG SR N R
Sbjct: 191 NGSLLATTCKDRKIRIVDPRLGIVLQEAS--YKGHRANKVLFLGSLKKLLSTGTSRWNNR 248

Query: 851 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           Q+ALWD ++L  PL+ ++LD SSGVL PFFD DT+M
Sbjct: 249 QMALWDQENLSVPLTEEDLDGSSGVLFPFFDSDTSM 284



 Score = 30.8 bits (68), Expect(3) = 1e-74
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAP 1020
            +Y+ GKGD +IRY++++ E P
Sbjct: 285  LYIVGKGDGNIRYYEVSMEKP 305



 Score = 28.5 bits (62), Expect(3) = 1e-74
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P L YL+ + S +  +G+G +P  GL+V+
Sbjct: 305  PHLTYLTEYRSYNPQKGIGIMPKRGLDVS 333


>ref|NP_084481.3| coronin-7 [Mus musculus].
          Length = 922

 Score =  151 bits (381), Expect(2) = 1e-38
 Identities = 95/275 (34%), Positives = 137/275 (49%), Gaps = 5/275 (1%)
 Frame = +2

Query: 143  KFRHVFGQPAKADQCYEDVRVSQTTW---DSGFCAVNPKFVALICEASGGGAFLVLPLSK 313
            KFRH  G     D    +++    T      GFCA   +    +   S GG   VL L K
Sbjct: 469  KFRHTQGSLLHRDSHITNLKGLNLTTPGESDGFCANRLRVAVPLL--SSGGQVAVLELQK 526

Query: 314  TGRVDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVT 493
             GR+   A     +   V+D+ W P + + +A   ED  + +W +P GGL   L  P   
Sbjct: 527  PGRLPDTALPTLQNGTAVMDLVWDPFDPHRLAVAGEDARIRLWRVPPGGLENVLTTPETV 586

Query: 494  LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSR 673
            L GHT+++  + +HP A +VL S+  D  + +WD+ TGA  L L    H D I+S+ WS 
Sbjct: 587  LTGHTEKIYSLRFHPLAADVLASSSYDLTVRIWDLQTGAERLKLQG--HQDQIFSLAWSP 644

Query: 674  DGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGK-KSDTGFSRMNER 850
            DG  + T C+D  VR+ EPR   +  ++    EG R  R V+V DG     +GF   +ER
Sbjct: 645  DGKQLATVCKDGHVRVYEPRSSPLPLQEGPGPEGGRGARIVWVCDGGCLLVSGFDSRSER 704

Query: 851  QVALWDTKHLEE-PLSLQELDTSSGVLLPFFDPDT 952
            Q+ L+    L + P +L  LD +   LLP +DPDT
Sbjct: 705  QLQLYIADALAQGPSALLGLDVAPSTLLPSYDPDT 739



 Score = 27.7 bits (60), Expect(2) = 1e-38
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAPFWPIC 1035
            V L GKGD+ +  +++  EAPF+  C
Sbjct: 742  VLLTGKGDTRVFLYEVLPEAPFFLEC 767



 Score =  140 bits (352), Expect = 2e-33
 Identities = 85/271 (31%), Positives = 134/271 (49%), Gaps = 1/271 (0%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRH+  +P++ +    D+R   T         +   +A    +   G   V+ L     
Sbjct: 8   KFRHMEARPSRREAWISDIRAVTTPTCGNHIKSSCSLIAF--NSDRPGVLGVISLEGHEE 65

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
             ++   +  H+  V D+ + P +D ++ASGS D T+ +W +   G  LP   P V L  
Sbjct: 66  NKRHVTYLGCHSDLVTDLDFSPFDDFLLASGSADRTIKLWRLSGTGEALP-SVPGVVLGP 124

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
               V ++ +HPT   VL+S      + VWDV     +  L  + H D + S  WSRDGA
Sbjct: 125 EELPVEVLQFHPTVDGVLVSTA-GKTVKVWDVAKQQPLTEL--EAHKDLVQSAVWSRDGA 181

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVS-DGKKSDTGFSRMNERQVA 859
           ++ T+C+DK++RI +PR  T  ++  + HE  R +R  +         TGF++M ER+  
Sbjct: 182 IVGTACKDKQLRIFDPRARTQASQSTQAHENNRDIRLAWTGIQEHLVSTGFNQMREREAK 241

Query: 860 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDT 952
           LWDT+     L+   LDTS G L+P  DPD+
Sbjct: 242 LWDTRLFSSALASVTLDTSPGPLIPLLDPDS 272


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,403,220
Number of extensions: 1217423
Number of successful extensions: 5608
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 5351
Number of HSP's successfully gapped: 87
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012141
         (1105 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001180262.1| coronin-1A [Homo sapiens].                        535   e-167
Alignment   gi|NP_009005.1| coronin-1A [Homo sapiens].                           535   e-167
Alignment   gi|NP_001018080.1| coronin-1B [Homo sapiens].                        434   e-131
Alignment   gi|NP_065174.1| coronin-1B [Homo sapiens].                           434   e-131
Alignment   gi|NP_055140.1| coronin-1C isoform 1 [Homo sapiens].                 426   e-131
Alignment   gi|NP_116243.2| coronin-6 [Homo sapiens].                            392   e-120
Alignment   gi|NP_006082.3| coronin-2B isoform 1 [Homo sapiens].                 264   7e-77
Alignment   gi|NP_001177386.1| coronin-2B isoform 2 [Homo sapiens].              264   7e-77
Alignment   gi|NP_001177385.1| coronin-2B isoform 2 [Homo sapiens].              264   7e-77
Alignment   gi|NP_003380.3| coronin-2A [Homo sapiens].                           266   6e-76

>ref|NP_001180262.1| coronin-1A [Homo sapiens].
          Length = 461

 Score =  535 bits (1379), Expect(3) = e-167
 Identities = 255/272 (93%), Positives = 262/272 (96%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPL KTGR
Sbjct: 10  KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLGKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKNAP VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL LPLREPVVTLEG
Sbjct: 70  VDKNAPTVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLMLPLREPVVTLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGIVAWH TAQNVLLSAGCDNVI+VWDVGTGAA+LTLG +VHPDTIYSVDWSRDG 
Sbjct: 130 HTKRVGIVAWHTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDTIYSVDWSRDGG 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           LICTSCRDKRVRIIEPRKGT+VAEKDRPHEGTRPVRAVFVS+GK   TGFSRM+ERQVAL
Sbjct: 190 LICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGFSRMSERQVAL 249

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WDTKHLEEPLSLQELDTSSGVLLPFFDPDT +
Sbjct: 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI 281



 Score = 50.8 bits (120), Expect(3) = e-167
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  N VYLCGKGDSSIRYF+ITSEAPF
Sbjct: 277  PDTNIVYLCGKGDSSIRYFEITSEAPF 303



 Score = 45.4 bits (106), Expect(3) = e-167
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PFL YLS F S++S RGMGY+P  GLEVN
Sbjct: 302  PFLHYLSMFSSKESQRGMGYMPKRGLEVN 330


>ref|NP_009005.1| coronin-1A [Homo sapiens].
          Length = 461

 Score =  535 bits (1379), Expect(3) = e-167
 Identities = 255/272 (93%), Positives = 262/272 (96%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPL KTGR
Sbjct: 10  KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLGKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKNAP VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL LPLREPVVTLEG
Sbjct: 70  VDKNAPTVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLMLPLREPVVTLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGIVAWH TAQNVLLSAGCDNVI+VWDVGTGAA+LTLG +VHPDTIYSVDWSRDG 
Sbjct: 130 HTKRVGIVAWHTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDTIYSVDWSRDGG 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           LICTSCRDKRVRIIEPRKGT+VAEKDRPHEGTRPVRAVFVS+GK   TGFSRM+ERQVAL
Sbjct: 190 LICTSCRDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGFSRMSERQVAL 249

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WDTKHLEEPLSLQELDTSSGVLLPFFDPDT +
Sbjct: 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNI 281



 Score = 50.8 bits (120), Expect(3) = e-167
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  N VYLCGKGDSSIRYF+ITSEAPF
Sbjct: 277  PDTNIVYLCGKGDSSIRYFEITSEAPF 303



 Score = 45.4 bits (106), Expect(3) = e-167
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PFL YLS F S++S RGMGY+P  GLEVN
Sbjct: 302  PFLHYLSMFSSKESQRGMGYMPKRGLEVN 330


>ref|NP_001018080.1| coronin-1B [Homo sapiens].
          Length = 489

 Score =  434 bits (1116), Expect(3) = e-131
 Identities = 196/272 (72%), Positives = 238/272 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQP K DQCYED+RVS+ TWDS FCAVNPKF+A+I EASGGGAFLVLPLSKTGR
Sbjct: 11  KFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFLVLPLSKTGR 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK  P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLT PL EPVV LEG
Sbjct: 71  IDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGI+AWHPTA+NVLLSAGCDNV+L+W+VGT   +  L S +HPD IY+V W+ +G+
Sbjct: 131 HTKRVGIIAWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDS-LHPDLIYNVSWNHNGS 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L C++C+DK VRII+PR+GT+VAE+++ HEG RP+RA+F++DGK   TGFSRM+ERQ+AL
Sbjct: 190 LFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSERQLAL 249

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD ++LEEP++LQELD+S+G LLPF+DPDT++
Sbjct: 250 WDPENLEEPMALQELDSSNGALLPFYDPDTSV 281



 Score = 43.1 bits (100), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VY+CGKGDSSIRYF+IT E P+
Sbjct: 277  PDTSVVYVCGKGDSSIRYFEITEEPPY 303



 Score = 33.9 bits (76), Expect(3) = e-131
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ +L+ F S++  RGMG +P  GLEV+
Sbjct: 302  PYIHFLNTFTSKEPQRGMGSMPKRGLEVS 330


>ref|NP_065174.1| coronin-1B [Homo sapiens].
          Length = 489

 Score =  434 bits (1116), Expect(3) = e-131
 Identities = 196/272 (72%), Positives = 238/272 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQP K DQCYED+RVS+ TWDS FCAVNPKF+A+I EASGGGAFLVLPLSKTGR
Sbjct: 11  KFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFLVLPLSKTGR 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK  P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLT PL EPVV LEG
Sbjct: 71  IDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           HTKRVGI+AWHPTA+NVLLSAGCDNV+L+W+VGT   +  L S +HPD IY+V W+ +G+
Sbjct: 131 HTKRVGIIAWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDS-LHPDLIYNVSWNHNGS 189

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L C++C+DK VRII+PR+GT+VAE+++ HEG RP+RA+F++DGK   TGFSRM+ERQ+AL
Sbjct: 190 LFCSACKDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSERQLAL 249

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD ++LEEP++LQELD+S+G LLPF+DPDT++
Sbjct: 250 WDPENLEEPMALQELDSSNGALLPFYDPDTSV 281



 Score = 43.1 bits (100), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VY+CGKGDSSIRYF+IT E P+
Sbjct: 277  PDTSVVYVCGKGDSSIRYFEITEEPPY 303



 Score = 33.9 bits (76), Expect(3) = e-131
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ +L+ F S++  RGMG +P  GLEV+
Sbjct: 302  PYIHFLNTFTSKEPQRGMGSMPKRGLEVS 330


>ref|NP_055140.1| coronin-1C isoform 1 [Homo sapiens].
          Length = 474

 Score =  426 bits (1094), Expect(3) = e-131
 Identities = 192/272 (70%), Positives = 237/272 (87%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ  K DQCY+D+RVS+ TWDS FCAVNP+FVA+I EASGGGAFLVLPL KTGR
Sbjct: 9   KFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGR 68

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +DK+ P VCGHT PVLDI WCPHND VIASGSEDCTVMVW+IP+ GLTL L EPVV LEG
Sbjct: 69  IDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEG 128

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGIVAWHPTA+NVLLSAGCDN I++W+VGTG A++ L  D+H D IY+V W+R+G+
Sbjct: 129 HSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINL-DDMHSDMIYNVSWNRNGS 187

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           LICT+ +DK+VR+I+PRK  IVAEK++ HEG RP+RA+F++DG    TGFSRM+ERQ+AL
Sbjct: 188 LICTASKDKKVRVIDPRKQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLAL 247

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           W+ K+++EP++L E+DTS+GVLLPF+DPDT++
Sbjct: 248 WNPKNMQEPIALHEMDTSNGVLLPFYDPDTSI 279



 Score = 44.7 bits (104), Expect(3) = e-131
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + +YLCGKGDSSIRYF+IT E+P+
Sbjct: 275  PDTSIIYLCGKGDSSIRYFEITDESPY 301



 Score = 38.9 bits (89), Expect(3) = e-131
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P++ YL+ F S++  RGMGY+P  GL+VN
Sbjct: 300  PYVHYLNTFSSKEPQRGMGYMPKRGLDVN 328


>ref|NP_116243.2| coronin-6 [Homo sapiens].
          Length = 472

 Score =  392 bits (1008), Expect(3) = e-120
 Identities = 179/272 (65%), Positives = 228/272 (83%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFGQ AKADQ YED+RVS+ TWDS FCAVNPKF+A+I EA GGGAF+VLPL+KTGR
Sbjct: 10  KFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGR 69

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           VDKN P+V GHTAPVLDI WCPHNDNVIAS S+D T+MVW+IPD      + EP++TLEG
Sbjct: 70  VDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEG 129

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H+KRVGI++WHPTA+NVLLSAG DNVI++W+VGTG  +L+L  D+HPD I+SV W+ +G+
Sbjct: 130 HSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSL-DDMHPDVIHSVCWNSNGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKKSDTGFSRMNERQVAL 862
           L+ T+C+DK +RII+PRKG +VAE+   HEG RP+RAVF   G    TGF+RM++R++ L
Sbjct: 189 LLATTCKDKTLRIIDPRKGQVVAERFAAHEGMRPMRAVFTRQGHIFTTGFTRMSQRELGL 248

Query: 863 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           WD  + EEP++LQE+DTS+GVLLPF+DPD+++
Sbjct: 249 WDPNNFEEPVALQEMDTSNGVLLPFYDPDSSI 280



 Score = 45.8 bits (107), Expect(3) = e-120
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 943  PRHNNVYLCGKGDSSIRYFQITSEAPF 1023
            P  + VYLCGKGDSSIRYF+IT E PF
Sbjct: 276  PDSSIVYLCGKGDSSIRYFEITDEPPF 302



 Score = 36.6 bits (83), Expect(3) = e-120
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            PF+ YL+ F S++  RGMG++P  GL+V+
Sbjct: 301  PFVHYLNTFSSKEPQRGMGFMPKRGLDVS 329


>ref|NP_006082.3| coronin-2B isoform 1 [Homo sapiens].
          Length = 480

 Score =  264 bits (675), Expect(3) = 7e-77
 Identities = 125/273 (45%), Positives = 186/273 (68%), Gaps = 1/273 (0%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFR+V+G+ A  + C++ + +++   D+ FCAVN +F+A++ E++GGG+FLV+PL +TGR
Sbjct: 16  KFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNTRFLAIVTESAGGGSFLVIPLEQTGR 75

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           ++ N P VCGH   VLDI W P  DN+IAS SED +V +WEIP+GGL   + E ++ L G
Sbjct: 76  IEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLELHG 135

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H++RVG+V WHPT  N+L SAG D  +L+W++  G  V  +  D H D I  + ++ DG+
Sbjct: 136 HSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDVGEPVKMI--DCHTDVILCMSFNTDGS 193

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNERQVA 859
           L+ T+C+DK++R+IEPR G ++ E +  +   R  R VF+ + K+   TG SR N RQ+A
Sbjct: 194 LLTTTCKDKKLRVIEPRSGRVLQEANCKNH--RVNRVVFLGNMKRLLTTGVSRWNTRQIA 251

Query: 860 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           LWD + L  PL  +E+D  SG+L PF+D DT M
Sbjct: 252 LWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHM 284



 Score = 34.3 bits (77), Expect(3) = 7e-77
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAPF 1023
            +YL GKGD +IRY++I++E P+
Sbjct: 285  LYLAGKGDGNIRYYEISTEKPY 306



 Score = 29.6 bits (65), Expect(3) = 7e-77
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P+L+YL  F S    +G+G +P  GL+V+
Sbjct: 305  PYLSYLMEFRSPAPQKGLGVMPKHGLDVS 333


>ref|NP_001177386.1| coronin-2B isoform 2 [Homo sapiens].
          Length = 475

 Score =  264 bits (675), Expect(3) = 7e-77
 Identities = 125/273 (45%), Positives = 186/273 (68%), Gaps = 1/273 (0%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFR+V+G+ A  + C++ + +++   D+ FCAVN +F+A++ E++GGG+FLV+PL +TGR
Sbjct: 11  KFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNTRFLAIVTESAGGGSFLVIPLEQTGR 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           ++ N P VCGH   VLDI W P  DN+IAS SED +V +WEIP+GGL   + E ++ L G
Sbjct: 71  IEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLELHG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H++RVG+V WHPT  N+L SAG D  +L+W++  G  V  +  D H D I  + ++ DG+
Sbjct: 131 HSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDVGEPVKMI--DCHTDVILCMSFNTDGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNERQVA 859
           L+ T+C+DK++R+IEPR G ++ E +  +   R  R VF+ + K+   TG SR N RQ+A
Sbjct: 189 LLTTTCKDKKLRVIEPRSGRVLQEANCKNH--RVNRVVFLGNMKRLLTTGVSRWNTRQIA 246

Query: 860 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           LWD + L  PL  +E+D  SG+L PF+D DT M
Sbjct: 247 LWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHM 279



 Score = 34.3 bits (77), Expect(3) = 7e-77
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAPF 1023
            +YL GKGD +IRY++I++E P+
Sbjct: 280  LYLAGKGDGNIRYYEISTEKPY 301



 Score = 29.6 bits (65), Expect(3) = 7e-77
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P+L+YL  F S    +G+G +P  GL+V+
Sbjct: 300  PYLSYLMEFRSPAPQKGLGVMPKHGLDVS 328


>ref|NP_001177385.1| coronin-2B isoform 2 [Homo sapiens].
          Length = 475

 Score =  264 bits (675), Expect(3) = 7e-77
 Identities = 125/273 (45%), Positives = 186/273 (68%), Gaps = 1/273 (0%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFR+V+G+ A  + C++ + +++   D+ FCAVN +F+A++ E++GGG+FLV+PL +TGR
Sbjct: 11  KFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNTRFLAIVTESAGGGSFLVIPLEQTGR 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           ++ N P VCGH   VLDI W P  DN+IAS SED +V +WEIP+GGL   + E ++ L G
Sbjct: 71  IEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLELHG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDTIYSVDWSRDGA 682
           H++RVG+V WHPT  N+L SAG D  +L+W++  G  V  +  D H D I  + ++ DG+
Sbjct: 131 HSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDVGEPVKMI--DCHTDVILCMSFNTDGS 188

Query: 683 LICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNERQVA 859
           L+ T+C+DK++R+IEPR G ++ E +  +   R  R VF+ + K+   TG SR N RQ+A
Sbjct: 189 LLTTTCKDKKLRVIEPRSGRVLQEANCKNH--RVNRVVFLGNMKRLLTTGVSRWNTRQIA 246

Query: 860 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           LWD + L  PL  +E+D  SG+L PF+D DT M
Sbjct: 247 LWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHM 279



 Score = 34.3 bits (77), Expect(3) = 7e-77
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAPF 1023
            +YL GKGD +IRY++I++E P+
Sbjct: 280  LYLAGKGDGNIRYYEISTEKPY 301



 Score = 29.6 bits (65), Expect(3) = 7e-77
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P+L+YL  F S    +G+G +P  GL+V+
Sbjct: 300  PYLSYLMEFRSPAPQKGLGVMPKHGLDVS 328


>ref|NP_003380.3| coronin-2A [Homo sapiens].
          Length = 525

 Score =  266 bits (680), Expect(3) = 6e-76
 Identities = 129/276 (46%), Positives = 186/276 (67%), Gaps = 4/276 (1%)
 Frame = +2

Query: 143 KFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLSKTGR 322
           KFRHVFG+PA  + CY+ V ++++  D+ FCAVNP F+A++ E +GGGAFLV+PL +TG+
Sbjct: 11  KFRHVFGKPASKENCYDSVPITRSVHDNHFCAVNPHFIAVVTECAGGGAFLVIPLHQTGK 70

Query: 323 VDKNAPMVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEG 502
           +D + P VCGH   VLD+ W P +D  IAS SED T+ +W IP   LT  L      L G
Sbjct: 71  LDPHYPKVCGHRGNVLDVKWNPFDDFEIASCSEDATIKIWSIPKQLLTRNLTAYRKELVG 130

Query: 503 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGSDV---HPDTIYSVDWSR 673
           H +RVG+V WHPTA N+L SAG D  +++W++ T  +V+T        H D I S+ ++ 
Sbjct: 131 HARRVGLVEWHPTAANILFSAGYDYKVMIWNLDTKESVITSPMSTISCHQDVILSMSFNT 190

Query: 674 DGALICTSCRDKRVRIIEPRKGTIVAEKDRPHEGTRPVRAVFVSDGKK-SDTGFSRMNER 850
           +G+L+ T+C+D+++R+I+PR GT++ E    ++G R  + +F+ + KK   TG SR N R
Sbjct: 191 NGSLLATTCKDRKIRVIDPRAGTVLQEAS--YKGHRASKVLFLGNLKKLMSTGTSRWNNR 248

Query: 851 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTTM 958
           QVALWD  +L  PL  ++LD SSGVL PF+D DT+M
Sbjct: 249 QVALWDQDNLSVPLMEEDLDGSSGVLFPFYDADTSM 284



 Score = 30.0 bits (66), Expect(3) = 6e-76
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +1

Query: 958  VYLCGKGDSSIRYFQITSEAP 1020
            +Y+ GKGD +IRY++++++ P
Sbjct: 285  LYVVGKGDGNIRYYEVSADKP 305



 Score = 28.9 bits (63), Expect(3) = 6e-76
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 1017 PFLAYLSRFISRDSNRGMGYLPNLGLEVN 1103
            P L+YL+ + S +  +G+G +P  GL+V+
Sbjct: 305  PHLSYLTEYRSYNPQKGIGVMPKRGLDVS 333


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,158,425
Number of extensions: 1466917
Number of successful extensions: 7074
Number of sequences better than 1.0e-05: 63
Number of HSP's gapped: 6751
Number of HSP's successfully gapped: 112
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012141
         (1105 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL892962.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   375   e-101
Sscrofa_Chr02                                                          78   1e-11
gb|GL892945.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...    70   3e-09
gb|GL894036.2| Sus scrofa unplaced genomic scaffold ChrUScaf1920       66   4e-08

>gb|GL892962.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1775
          Length = 17377

 Score =  375 bits (189), Expect = e-101
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                        
Query: 564  caggttgtgacaacgtgatcctggtgtgggacgtgggcactggggcggccgtgctgacgc 623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3392 caggttgtgacaacgtgatcctggtgtgggacgtgggcactggggcggccgtgctgacgc 3451

                                                                        
Query: 624  tgggctcggacgtgcacccggacacaatctacagcgtggactggagccgagacggcgccc 683
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3452 tgggctcggacgtgcacccggacacaatctacagcgtggactggagccgagacggcgccc 3511

                                                                        
Query: 684  tcatctgcacctcctgccgggacaagcgagttcgcatcattgagccccgcaaaggcacca 743
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3512 tcatctgcacctcctgccgggacaagcgagttcgcatcattgagccccgcaaaggcacca 3571

                     
Query: 744  ttgtagcgg 752
            |||||||||
Sbjct: 3572 ttgtagcgg 3580



 Score =  264 bits (133), Expect = 9e-68
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                        
Query: 181  ccagtgctatgaggacgtgcgcgtctcacagaccacctgggacagtggcttctgtgctgt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 ccagtgctatgaggacgtgcgcgtctcacagaccacctgggacagtggcttctgtgctgt 1640

                                                                        
Query: 241  caaccccaagttcgtggccttgatctgtgaggccagcgggggcggggccttcctggtact 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 caaccccaagttcgtggccttgatctgtgaggccagcgggggcggggccttcctggtact 1700

                         
Query: 301  gcccctgagcaag 313
            |||||||||||||
Sbjct: 1701 gcccctgagcaag 1713



 Score =  254 bits (128), Expect = 9e-65
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                        
Query: 312  agactggccgtgtggacaagaatgcgcctatggtctgtggccacacggcgcccgtgctgg 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3096 agactggccgtgtggacaagaatgcgcctatggtctgtggccacacggcgcccgtgctgg 3155

                                                                        
Query: 372  acatcgcctggtgcccgcacaatgataacgtcattgccagtggctccgaagattgcacgg 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3156 acatcgcctggtgcccgcacaatgataacgtcattgccagtggctccgaagattgcacgg 3215

                    
Query: 432  tcatggtg 439
            ||||||||
Sbjct: 3216 tcatggtg 3223



 Score =  109 bits (55), Expect = 3e-21
 Identities = 58/59 (98%)
 Strand = Plus / Plus

                                                                       
Query: 751  ggagaaggaccgtccccacgaggggacccggcccgtgcgagctgtgtttgtgtccgatg 809
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3736 ggagaaggaccgtccccacgaggggacccggcccgtgcgagctgtgtttgtgtctgatg 3794



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 66/72 (91%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                        
Query: 974  agggtgacagctctatccggtacttccagatcacttccgaggcccc-tttctggcctatc 1032
            |||||||||||||||||||||||||| ||||||||||||||||||| || |||  |||||
Sbjct: 4085 agggtgacagctctatccggtacttcgagatcacttccgaggccccgttcctgcactatc 4144

                        
Query: 1033 tgtccaggttca 1044
            |||||| |||||
Sbjct: 4145 tgtccatgttca 4156



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                              
Query: 112  caggatgagccggcaggtggtccgttccagcaag 145
            ||||||||||||||||||||||||||||||||||
Sbjct: 1447 caggatgagccggcaggtggtccgttccagcaag 1480


>Sscrofa_Chr02 
||          Length = 162569375

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                           
Query: 494     ctggagggccacaccaagcgcgtgggcatcgtggcctggcaccccacggcccagaacgtg 553
               |||||||| ||||||||||||||||||||| |  | |||||||| |||||||  ||||||
Sbjct: 3800900 ctggagggtcacaccaagcgcgtgggcatcatcacgtggcacccgacggcccgcaacgtg 3800959

                              
Query: 554     ctgctcagtgcaggt 568
               |||||||| ||||||
Sbjct: 3800960 ctgctcagcgcaggt 3800974



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                           
Query: 347     tgtggccacacggcgcccgtgctggacatcgcctggtgcccgcacaatgataacgtcatt 406
               ||||| |||||||  ||||| |||||||||| |||||| || ||||||||  | ||||| 
Sbjct: 3800663 tgtggacacacgggacccgtcctggacatcgactggtgtccccacaatgacgaagtcatc 3800722

                                                
Query: 407     gccagtggctccgaagattgcacggtcatggtg 439
               ||||| ||||| || || |||||||||||||||
Sbjct: 3800723 gccagcggctcggaggactgcacggtcatggtg 3800755


>gb|GL892945.1| Sus scrofa unplaced genomic scaffold chrU_scaffold176
          Length = 215

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 2  tcattgtcttgacgagagcatcctcagcgggcagt 36
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  tcattgtcttgacgagagcatcctcagcgggcagt 35


>gb|GL894036.2| Sus scrofa unplaced genomic scaffold ChrUScaf1920
          Length = 87809

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                         
Query: 500   ggccacaccaagcgcgtgggcatcgtggcctggcaccccacggcccagaacgtgctgctc 559
             |||||| |||| || ||||||||| |  ||||||||||||| |||| |||||| ||||||
Sbjct: 85265 ggccactccaaacgtgtgggcatcctctcctggcaccccacagcccggaacgttctgctc 85206

                      
Query: 560   agtgcaggt 568
             |||||||||
Sbjct: 85205 agtgcaggt 85197


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,024,057
Number of extensions: 108
Number of successful extensions: 108
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 10
Length of query: 1105
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1084
Effective length of database: 2,808,413,156
Effective search space: 3044319861104
Effective search space used: 3044319861104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)