Animal-Genome cDNA 20110601C-012159

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012159
         (1398 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_548112.2| PREDICTED: similar to type I hair keratin KA27 ...   580   e-166
Alignment   gi|XP_548111.2| PREDICTED: similar to type I hair keratin KA27 ...   571   e-163
Alignment   gi|XP_849817.1| PREDICTED: similar to type I hair keratin KA28 ...   565   e-161
Alignment   gi|XP_548114.2| PREDICTED: similar to type I hair keratin KA27 ...   563   e-160
Alignment   gi|XP_548108.2| PREDICTED: similar to type I hair keratin 2 [Ca...   510   e-144
Alignment   gi|XP_548107.2| PREDICTED: similar to type I hair keratin 6 [Ca...   510   e-144
Alignment   gi|XP_849714.1| PREDICTED: similar to type I hair keratin 5 [Ca...   505   e-143
Alignment   gi|XP_850058.1| PREDICTED: similar to type I hair keratin KA36 ...   461   e-130
Alignment   gi|XP_548109.2| PREDICTED: similar to type I hair keratin 8 [Ca...   444   e-124
Alignment   gi|XP_548110.2| PREDICTED: similar to type I hair keratin 8 [Ca...   437   e-123

>ref|XP_548112.2| PREDICTED: similar to type I hair keratin KA27 [Canis familiaris].
          Length = 393

 Score =  580 bits (1496), Expect = e-166
 Identities = 301/363 (82%), Positives = 318/363 (87%), Gaps = 2/363 (0%)
 Frame = +2

Query: 155  TLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXX 334
            TLPGA NIPA V +  WFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE +NA       
Sbjct: 30   TLPGACNIPANVGNCGWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERENAELESRIR 89

Query: 335  XXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVER 514
                   P VCP+YQSYFRTIEELQQKIL AKSENTRLVVQ+DNAKLA+DDFRTKY+ E 
Sbjct: 90   EWCQQQVPFVCPSYQSYFRTIEELQQKILCAKSENTRLVVQIDNAKLASDDFRTKYQTEL 149

Query: 515  SSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRL 694
            S RQLVESDIN LRRILDELTLCK+DLE QVESLREELL LK+NHEEEVN+LR Q+GDRL
Sbjct: 150  SLRQLVESDINGLRRILDELTLCKSDLEAQVESLREELLSLKRNHEEEVNTLRCQIGDRL 209

Query: 695  NIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQ 874
            N+EVDAAPTVDLN VLNETRSQYEALVETNRRDVEEWF  QTEELNKQVVSSSEQLQS Q
Sbjct: 210  NVEVDAAPTVDLNRVLNETRSQYEALVETNRRDVEEWFTTQTEELNKQVVSSSEQLQSCQ 269

Query: 875  AEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIR 1054
            AEIIELRRTVNALE+ELQAQHNLRDSLENTLTETEARY SQLAQVQ +I NVE+QLAEIR
Sbjct: 270  AEIIELRRTVNALEIELQAQHNLRDSLENTLTETEARYGSQLAQVQYMITNVESQLAEIR 329

Query: 1055 ADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSC--SQ 1228
             DLERQNQEYQVLLDV+ARLECEINTYRGLLESEDCKLP NPCATTNA  NS  SC  SQ
Sbjct: 330  CDLERQNQEYQVLLDVKARLECEINTYRGLLESEDCKLPCNPCATTNACGNSCGSCGNSQ 389

Query: 1229 KRC 1237
             RC
Sbjct: 390  TRC 392


>ref|XP_548111.2| PREDICTED: similar to type I hair keratin KA27 [Canis familiaris].
          Length = 409

 Score =  571 bits (1472), Expect = e-163
 Identities = 295/361 (81%), Positives = 313/361 (86%)
 Frame = +2

Query: 155  TLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXX 334
            TLPGA NIPA V +  WFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE +NA       
Sbjct: 30   TLPGACNIPANVGNCGWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERENAELESRIR 89

Query: 335  XXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVER 514
                   P VCP+YQSYFRTIEELQQKIL  KSEN +LVVQVDNAKLAADDFRTKYE E 
Sbjct: 90   ERCQQQEPFVCPSYQSYFRTIEELQQKILCTKSENAKLVVQVDNAKLAADDFRTKYETEL 149

Query: 515  SSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRL 694
              RQLVESDIN LRRILDELTLCK+DLE QVESL+EELLCLK+NHEEEVN+LR Q+GDRL
Sbjct: 150  GLRQLVESDINGLRRILDELTLCKSDLEAQVESLKEELLCLKRNHEEEVNTLRCQIGDRL 209

Query: 695  NIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQ 874
            N+EVDAAP VDLN VLNETRSQYEALVETNRRDVEEWF  QTEELNKQVVSSSEQLQS Q
Sbjct: 210  NVEVDAAPAVDLNRVLNETRSQYEALVETNRRDVEEWFTTQTEELNKQVVSSSEQLQSCQ 269

Query: 875  AEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIR 1054
            AEIIELRRTVNALE+ELQAQHNLRDSLENTLTETEARYSSQL Q+Q +I NVE+QLAEIR
Sbjct: 270  AEIIELRRTVNALEIELQAQHNLRDSLENTLTETEARYSSQLGQLQCMITNVESQLAEIR 329

Query: 1055 ADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKR 1234
            +DLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLP NPCATTNA  +S  SC    
Sbjct: 330  SDLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPCNPCATTNACGSS-GSCVSNS 388

Query: 1235 C 1237
            C
Sbjct: 389  C 389


>ref|XP_849817.1| PREDICTED: similar to type I hair keratin KA28 [Canis familiaris].
          Length = 407

 Score =  565 bits (1456), Expect = e-161
 Identities = 291/361 (80%), Positives = 310/361 (85%)
 Frame = +2

Query: 155  TLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXX 334
            TLPGA NIPA V +  WFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE +NA       
Sbjct: 30   TLPGACNIPANVGNCGWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERENAELESRIR 89

Query: 335  XXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVER 514
                   P VCP+YQSYFRTIEELQQKIL +KSEN RLVVQ+DNAKLAADDFRTKY+ E 
Sbjct: 90   EWCQQQVPFVCPSYQSYFRTIEELQQKILCSKSENARLVVQIDNAKLAADDFRTKYQTEL 149

Query: 515  SSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRL 694
              RQLVESDIN LRRILDELTLCK+DLE QVESL+EELL LK+NHE+EVN+LR Q+GDRL
Sbjct: 150  GLRQLVESDINGLRRILDELTLCKSDLEAQVESLKEELLSLKQNHEQEVNTLRCQIGDRL 209

Query: 695  NIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQ 874
            N+EVDAAPTVDLN VLNETRSQYEALVETNRRDVEEWF  QTEELNKQVVSSSEQLQS Q
Sbjct: 210  NVEVDAAPTVDLNRVLNETRSQYEALVETNRRDVEEWFTTQTEELNKQVVSSSEQLQSCQ 269

Query: 875  AEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIR 1054
            AEIIELRRTVNALE+ELQAQHNLRDSLENTLTETEARYSSQL QVQ +I NVE+QLAEIR
Sbjct: 270  AEIIELRRTVNALEIELQAQHNLRDSLENTLTETEARYSSQLNQVQCMITNVESQLAEIR 329

Query: 1055 ADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKR 1234
             DLERQNQEYQVLLDV+ARLECEINTYRGLLESEDCKLP NPCATTNA       C    
Sbjct: 330  CDLERQNQEYQVLLDVKARLECEINTYRGLLESEDCKLPCNPCATTNACDKPIGPCVTNP 389

Query: 1235 C 1237
            C
Sbjct: 390  C 390


>ref|XP_548114.2| PREDICTED: similar to type I hair keratin KA27 [Canis familiaris].
          Length = 410

 Score =  563 bits (1450), Expect = e-160
 Identities = 291/361 (80%), Positives = 308/361 (85%)
 Frame = +2

Query: 155  TLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXX 334
            TLPGA NIPA V +  WFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE +NA       
Sbjct: 36   TLPGACNIPANVGNCGWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERENAELESRIR 95

Query: 335  XXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVER 514
                   P VCP+YQSYFRTIEELQQKIL  KSEN RLVVQ+DNAKLA+DDFRTKYE E 
Sbjct: 96   EWCQQQVPFVCPSYQSYFRTIEELQQKILCNKSENARLVVQIDNAKLASDDFRTKYETEV 155

Query: 515  SSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRL 694
              RQLVESDIN LRRILDELTLCK+DLE QVESL+EELL LK+NHE+EVN LR Q+GDRL
Sbjct: 156  GLRQLVESDINGLRRILDELTLCKSDLEAQVESLKEELLSLKQNHEQEVNILRCQIGDRL 215

Query: 695  NIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQ 874
            N+EVDAAPTVDLN VLNETRSQYEALVETNRRDVEEWF  QTEELNKQVVSSSEQLQS Q
Sbjct: 216  NVEVDAAPTVDLNRVLNETRSQYEALVETNRRDVEEWFTTQTEELNKQVVSSSEQLQSCQ 275

Query: 875  AEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIR 1054
            AEIIELRRTVNALE+ELQAQHNLRDSLENTLTETEARYSSQL QVQ +I NVE+QLAEIR
Sbjct: 276  AEIIELRRTVNALEIELQAQHNLRDSLENTLTETEARYSSQLNQVQCMITNVESQLAEIR 335

Query: 1055 ADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKR 1234
             DLERQNQEYQVLLDV+ARLECEINTYRGLLESEDCKLP NPCATTNA       C    
Sbjct: 336  CDLERQNQEYQVLLDVKARLECEINTYRGLLESEDCKLPCNPCATTNACDKPIGPCVSNP 395

Query: 1235 C 1237
            C
Sbjct: 396  C 396


>ref|XP_548108.2| PREDICTED: similar to type I hair keratin 2 [Canis familiaris].
          Length = 448

 Score =  510 bits (1313), Expect = e-144
 Identities = 259/335 (77%), Positives = 289/335 (86%), Gaps = 2/335 (0%)
 Frame = +2

Query: 191  SSG--NWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLV 364
            SSG  +W+CEG+FNGNEKETMQFLNDRLASYLEKVRQLE +NA              P +
Sbjct: 80   SSGTCSWYCEGSFNGNEKETMQFLNDRLASYLEKVRQLERENAELESKIQEACRSQVPTM 139

Query: 365  CPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDI 544
            CP+YQSYFRTIEELQQK+L  K+EN R+VV +DNAKLAADDFRTKYE E + RQLVE+D 
Sbjct: 140  CPDYQSYFRTIEELQQKVLCTKAENARMVVHIDNAKLAADDFRTKYETEVAMRQLVEADT 199

Query: 545  NSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTV 724
            N LRRILDELTLCKADLE QVESL+EELLCLKKNHEEEV++LR QLGDRLNIEVDAA  V
Sbjct: 200  NGLRRILDELTLCKADLEAQVESLKEELLCLKKNHEEEVSALRCQLGDRLNIEVDAASPV 259

Query: 725  DLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTV 904
            DLN +L E R QYE +VETN RDVEEWF  Q EELN+QV +SSEQLQSYQ++II+LRRTV
Sbjct: 260  DLNRMLEEMRCQYETVVETNLRDVEEWFNTQMEELNQQVATSSEQLQSYQSDIIDLRRTV 319

Query: 905  NALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEY 1084
            N LE+ELQAQH+LRDSLENTL ETEARYSSQLAQ+Q +I NVE+QLAEIR DLERQNQEY
Sbjct: 320  NTLEIELQAQHSLRDSLENTLAETEARYSSQLAQMQCMITNVESQLAEIRCDLERQNQEY 379

Query: 1085 QVLLDVRARLECEINTYRGLLESEDCKLPSNPCAT 1189
            +VLLDV+ARLECEINTYRGLLESEDCKLPSNPC+T
Sbjct: 380  KVLLDVKARLECEINTYRGLLESEDCKLPSNPCST 414


>ref|XP_548107.2| PREDICTED: similar to type I hair keratin 6 [Canis familiaris].
          Length = 467

 Score =  510 bits (1313), Expect = e-144
 Identities = 259/334 (77%), Positives = 287/334 (85%)
 Frame = +2

Query: 188  VSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVC 367
            V SG WFCEG+FNG+EKETMQFLNDRLA+YLEKVRQLE +NA              P +C
Sbjct: 78   VGSGGWFCEGSFNGSEKETMQFLNDRLANYLEKVRQLERENAELERRIREWYESQIPYIC 137

Query: 368  PNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDIN 547
            P+YQSYF+TIEELQQKIL  K+EN RLV+Q+DNAKLAADDFRTKYE E S RQLVE+D N
Sbjct: 138  PDYQSYFKTIEELQQKILLTKAENARLVLQIDNAKLAADDFRTKYETELSMRQLVEADTN 197

Query: 548  SLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVD 727
             LRRILDELTLCKADLE+QVESL+EELLCLKKNHEEEVN+LR QLGDRLN+EVDAAP VD
Sbjct: 198  GLRRILDELTLCKADLESQVESLKEELLCLKKNHEEEVNTLRCQLGDRLNVEVDAAPPVD 257

Query: 728  LNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVN 907
            LN +L++ R QYEALVE NRRDVE WF  QTEELN+QVVSSSEQLQ  Q EIIELRR VN
Sbjct: 258  LNKILDDMRCQYEALVENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRNVN 317

Query: 908  ALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQ 1087
            ALE+ELQAQH++R+SLE+TL ETEARY SQLAQ+Q LIGNVEAQLAEIR DLERQNQEYQ
Sbjct: 318  ALEIELQAQHSMRNSLESTLAETEARYGSQLAQMQCLIGNVEAQLAEIRCDLERQNQEYQ 377

Query: 1088 VLLDVRARLECEINTYRGLLESEDCKLPSNPCAT 1189
            VLLDV+ARLE EI TYR LLE EDCKLP++PCAT
Sbjct: 378  VLLDVKARLESEIATYRRLLEGEDCKLPAHPCAT 411


>ref|XP_849714.1| PREDICTED: similar to type I hair keratin 5 [Canis familiaris].
          Length = 455

 Score =  505 bits (1300), Expect = e-143
 Identities = 263/348 (75%), Positives = 288/348 (82%)
 Frame = +2

Query: 197  GNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPNY 376
            G WF E    G+EKETMQ LNDRLASYLEKVRQLE +NA              P +CP+Y
Sbjct: 85   GGWFGESVLTGSEKETMQSLNDRLASYLEKVRQLEQENASLESRIREWCEQQVPYLCPDY 144

Query: 377  QSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLR 556
            QSYFRTIEELQ+K L  K+EN RLVVQ+DNAKLAADDFRTKYE E S RQLVESD+N LR
Sbjct: 145  QSYFRTIEELQKKTLCTKAENARLVVQIDNAKLAADDFRTKYETEVSMRQLVESDMNGLR 204

Query: 557  RILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNS 736
            RILD+LTLCK+DLE QVESL+EELLCLKKNHEEEVNSLR QLGDRLN+EVDAAP VDLN 
Sbjct: 205  RILDDLTLCKSDLEAQVESLKEELLCLKKNHEEEVNSLRCQLGDRLNVEVDAAPPVDLNR 264

Query: 737  VLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALE 916
            VL+E R QYE LVE NRRD EEWF  QTEELN+QVVSSSEQLQS QAEIIELRRTVNALE
Sbjct: 265  VLDEMRCQYETLVENNRRDAEEWFNTQTEELNQQVVSSSEQLQSCQAEIIELRRTVNALE 324

Query: 917  VELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLL 1096
            +E+QAQ ++RD+LE+TL ETEARYSSQLAQ+Q LIGNVEAQLAEIRADLERQNQEYQVLL
Sbjct: 325  IEMQAQQSMRDALESTLAETEARYSSQLAQMQCLIGNVEAQLAEIRADLERQNQEYQVLL 384

Query: 1097 DVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRCC 1240
            DVRARLE EINTYRGLLESE+ KLP NPCA  ++ A S + C     C
Sbjct: 385  DVRARLEGEINTYRGLLESEEGKLPGNPCAPDHSPAKSCLPCLPAVSC 432


>ref|XP_850058.1| PREDICTED: similar to type I hair keratin KA36 [Canis familiaris].
          Length = 431

 Score =  461 bits (1186), Expect = e-130
 Identities = 239/359 (66%), Positives = 279/359 (77%)
 Frame = +2

Query: 164  GARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXX 343
            G  NIP  V +  W  +G FN NEKETMQFLNDRLA+YLEKVR LE  NA          
Sbjct: 66   GNYNIPCLVGNCAWCEDGVFNSNEKETMQFLNDRLANYLEKVRGLEEMNAELECRIREQC 125

Query: 344  XXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSR 523
                PLVCP+YQ YF TIEELQQKIL  K+EN+RL VQ+DN KLAADDFR+KYE E S R
Sbjct: 126  EEDIPLVCPDYQCYFDTIEELQQKILCTKAENSRLAVQLDNCKLAADDFRSKYESELSLR 185

Query: 524  QLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIE 703
            QL+E+DI  LR ILDELTLCKADLE  VESL+E+LLCLKKNH+EEV+ LR QLGDRL++E
Sbjct: 186  QLIETDIGGLRGILDELTLCKADLEAHVESLKEDLLCLKKNHKEEVDLLRGQLGDRLSVE 245

Query: 704  VDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEI 883
            +D APT+DLN VL E R QYE ++  NRRDVEEWFA QTEELN+Q + S+EQLQ  Q EI
Sbjct: 246  LDTAPTIDLNRVLEEMRCQYETVLANNRRDVEEWFAVQTEELNQQQLCSAEQLQDCQTEI 305

Query: 884  IELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADL 1063
            +EL+RT NALE+ELQAQ +L +SLE T+ ETEA+YS+QLAQ+Q LI NVE QLAEIR DL
Sbjct: 306  LELKRTANALEIELQAQQSLTESLECTVAETEAQYSTQLAQMQCLIDNVENQLAEIRCDL 365

Query: 1064 ERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRCC 1240
            ERQNQEY+VLLD +A LE EINTYRGLLESED +LP NPC+T + S+N+  +CS    C
Sbjct: 366  ERQNQEYEVLLDTKALLEGEINTYRGLLESEDSRLPCNPCSTISTSSNTCEACSAYLIC 424


>ref|XP_548109.2| PREDICTED: similar to type I hair keratin 8 [Canis familiaris].
          Length = 589

 Score =  444 bits (1141), Expect = e-124
 Identities = 226/361 (62%), Positives = 280/361 (77%)
 Frame = +2

Query: 158  LPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXX 337
            LPG RNIP  +     + EGA NG+EK TMQFLNDRLA+YLEKVRQLE DN         
Sbjct: 211  LPGTRNIPGNIGVCENYGEGAPNGHEKVTMQFLNDRLANYLEKVRQLERDNEELETKIRE 270

Query: 338  XXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERS 517
                    VCP+YQSYF+TIEELQQKIL +K+ENTRL++QVDNAKLAADDFR K+E E S
Sbjct: 271  SSKCHESTVCPDYQSYFQTIEELQQKILCSKAENTRLIIQVDNAKLAADDFRIKHESELS 330

Query: 518  SRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLN 697
             RQ+VE+D+  + +++D+L+L KADLE Q ESL+EELLCLK+NHE+EV+ LR QLGD+L 
Sbjct: 331  LRQMVEADMCGMHKLMDDLSLAKADLEAQQESLKEELLCLKRNHEQEVSILRGQLGDKLQ 390

Query: 698  IEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQA 877
            I++D  PTVDL  VL + R  YEA+V+T+R DVEEWF  Q+E +++Q +S SE+L+  Q+
Sbjct: 391  IKLDVEPTVDLGRVLEDMRCHYEAMVQTSRNDVEEWFQDQSESISQQDMSCSEELRCCQS 450

Query: 878  EIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRA 1057
            EI+ELRRTVNALEVELQAQH L+D L+N+L E +AR+ ++LAQ+Q LI NVE QL+EIR 
Sbjct: 451  EILELRRTVNALEVELQAQHTLKDCLQNSLCEADARFGTELAQMQILISNVEEQLSEIRG 510

Query: 1058 DLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRC 1237
            DLERQNQEYQVLLDV+ARLECEINTYR LLESEDCKLP NPC+T  +   S   C+ +  
Sbjct: 511  DLERQNQEYQVLLDVKARLECEINTYRKLLESEDCKLPCNPCSTAASCVTS--PCATRPS 568

Query: 1238 C 1240
            C
Sbjct: 569  C 569


>ref|XP_548110.2| PREDICTED: similar to type I hair keratin 8 [Canis familiaris].
          Length = 440

 Score =  437 bits (1125), Expect = e-123
 Identities = 225/360 (62%), Positives = 279/360 (77%)
 Frame = +2

Query: 158  LPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXX 337
            LPG RNIP  +     + EGA NG+EK TMQFLNDRLA+YLEKVRQLE DN         
Sbjct: 79   LPGTRNIPGNIGVCENYGEGAPNGHEKVTMQFLNDRLANYLEKVRQLERDNEELETKIRE 138

Query: 338  XXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERS 517
                    VCP+YQSYF+TI+ELQQKIL +K+ENTR+V+Q+DNAKLAADDFR K+E E S
Sbjct: 139  SSKCHESTVCPDYQSYFQTIKELQQKILCSKAENTRMVIQIDNAKLAADDFRIKHESELS 198

Query: 518  SRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLN 697
             RQ+VE+D+  + +++D+L+L KADLE Q ESL+EELLCLK+NHE+EV+ LR QLGD+L 
Sbjct: 199  LRQVVEADMCGMHKLMDDLSLAKADLEAQQESLKEELLCLKRNHEQEVSILRGQLGDKLQ 258

Query: 698  IEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQA 877
            I++D  PTVDL  VL + R  YEA+V+T+R DVEEWF  Q+E +++Q +S SE+L+  Q+
Sbjct: 259  IKLDVEPTVDLGRVLEDMRCHYEAMVQTSRNDVEEWFQDQSESISQQDMSCSEELRCCQS 318

Query: 878  EIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRA 1057
            EI+ELRRTVNALEVELQAQH L+D L+N+L E +AR+ ++LAQ+Q LI NVE QL+EIR 
Sbjct: 319  EILELRRTVNALEVELQAQHTLKDCLQNSLCEADARFGTELAQMQILISNVEEQLSEIRG 378

Query: 1058 DLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRC 1237
            DLERQNQEYQVLLDV+ARLECEI TYR LLESEDCKLP NPC+T  AS     SC+   C
Sbjct: 379  DLERQNQEYQVLLDVKARLECEIATYRKLLESEDCKLPINPCSTA-ASRVLGPSCAPATC 437


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,242,573
Number of extensions: 911950
Number of successful extensions: 6395
Number of sequences better than 1.0e-05: 156
Number of HSP's gapped: 5956
Number of HSP's successfully gapped: 172
Length of query: 466
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 360
Effective length of database: 15,340,888
Effective search space: 5522719680
Effective search space used: 5522719680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012159
         (1398 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069419.1| keratin, type I cuticular Ha4 [Bos taurus].       611   e-175
Alignment   gi|NP_001069974.1| keratin 31 [Bos taurus].                          593   e-169
Alignment   gi|NP_001092569.1| keratin 31 [Bos taurus].                          591   e-169
Alignment   gi|NP_001076993.1| keratin, type I cuticular Ha3-I [Bos taurus].     551   e-157
Alignment   gi|NP_001069541.1| keratin, type I cuticular Ha5 [Bos taurus].       529   e-150
Alignment   gi|NP_001179454.1| keratin, type I cuticular Ha6 [Bos taurus].       507   e-144
Alignment   gi|XP_002696035.1| PREDICTED: keratin 36 [Bos taurus].               507   e-144
Alignment   gi|NP_001094772.1| keratin, type I cuticular Ha2 [Bos taurus].       478   e-135
Alignment   gi|NP_001098888.1| keratin, type I cytoskeletal 40 [Bos taurus].     457   e-129
Alignment   gi|XP_002696066.1| PREDICTED: keratin 38-like [Bos taurus].          453   e-127

>ref|NP_001069419.1| keratin, type I cuticular Ha4 [Bos taurus].
          Length = 391

 Score =  611 bits (1576), Expect = e-175
 Identities = 314/365 (86%), Positives = 329/365 (90%)
 Frame = +2

Query: 146  QGITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXX 325
            +G TLPGA NIPA V S NWFCEG+FNGNEKETMQFLNDRLASYLEKVRQLE DNA    
Sbjct: 27   RGTTLPGACNIPANVGSCNWFCEGSFNGNEKETMQFLNDRLASYLEKVRQLERDNAELES 86

Query: 326  XXXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYE 505
                      PL+CPNYQSYFRTIEELQQKIL AKSEN+RLV+Q+DNAKLAADDFRTKYE
Sbjct: 87   RILERSQQQEPLLCPNYQSYFRTIEELQQKILCAKSENSRLVIQIDNAKLAADDFRTKYE 146

Query: 506  VERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLG 685
             ERS RQLVESDINSLRRILDELTLCKADLE QVESL+EELLCLKKNHEEE NSLRSQLG
Sbjct: 147  TERSLRQLVESDINSLRRILDELTLCKADLEAQVESLKEELLCLKKNHEEEANSLRSQLG 206

Query: 686  DRLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQ 865
            DRLN+EVDAAPTVDLN VLNETR+QYEALVETNRRDVEEW+ RQTEELNKQVVSSSEQLQ
Sbjct: 207  DRLNVEVDAAPTVDLNRVLNETRAQYEALVETNRRDVEEWYIRQTEELNKQVVSSSEQLQ 266

Query: 866  SYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLA 1045
            SYQAEIIELRR VNALEVELQAQHNLRDSLENTLTETEARYS QLAQVQGLIGNVE+QLA
Sbjct: 267  SYQAEIIELRRMVNALEVELQAQHNLRDSLENTLTETEARYSCQLAQVQGLIGNVESQLA 326

Query: 1046 EIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCS 1225
            EIR+DLERQNQEYQVLLDVRARLECEINTYRGLL+SED KLP NPCATTNAS+ S  S +
Sbjct: 327  EIRSDLERQNQEYQVLLDVRARLECEINTYRGLLDSEDSKLPCNPCATTNASSISCRSSA 386

Query: 1226 QKRCC 1240
            Q RCC
Sbjct: 387  QNRCC 391


>ref|NP_001069974.1| keratin 31 [Bos taurus].
          Length = 416

 Score =  593 bits (1529), Expect = e-169
 Identities = 303/363 (83%), Positives = 318/363 (87%)
 Frame = +2

Query: 149  GITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXX 328
            G TLPGA NIPA V S NWFCEG+FNGNEKETMQFLNDRLASYLEKVRQLE +NA     
Sbjct: 28   GTTLPGACNIPANVGSCNWFCEGSFNGNEKETMQFLNDRLASYLEKVRQLERENAELESR 87

Query: 329  XXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEV 508
                     PL+CPNYQSYFRTIEELQQKIL AKSEN RLVVQ+DNAKLAADDFRTKYE 
Sbjct: 88   ILERSQQQEPLLCPNYQSYFRTIEELQQKILCAKSENARLVVQIDNAKLAADDFRTKYET 147

Query: 509  ERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGD 688
            E   RQLVESDIN LRRILDELTLCK+DLE QVESL+EEL+CLK NHEEEVN+LRSQLGD
Sbjct: 148  ELGLRQLVESDINGLRRILDELTLCKSDLEAQVESLKEELICLKSNHEEEVNTLRSQLGD 207

Query: 689  RLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQS 868
            RLN+EVDAAPTVDLN VLNETR+QYEALVETNRRDVEEW+ RQTEELNKQVVSSSEQLQS
Sbjct: 208  RLNVEVDAAPTVDLNRVLNETRAQYEALVETNRRDVEEWYIRQTEELNKQVVSSSEQLQS 267

Query: 869  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAE 1048
             Q EIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYS QLAQVQGLIGNVE+QLAE
Sbjct: 268  CQTEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSCQLAQVQGLIGNVESQLAE 327

Query: 1049 IRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQ 1228
            IR+DLERQNQEYQVLLDVRARLECEINTYRGLL+SEDCKLP NPCATTNA   +   C  
Sbjct: 328  IRSDLERQNQEYQVLLDVRARLECEINTYRGLLDSEDCKLPCNPCATTNACGKTITPCIS 387

Query: 1229 KRC 1237
              C
Sbjct: 388  SPC 390


>ref|NP_001092569.1| keratin 31 [Bos taurus].
          Length = 401

 Score =  591 bits (1523), Expect = e-169
 Identities = 303/366 (82%), Positives = 325/366 (88%), Gaps = 3/366 (0%)
 Frame = +2

Query: 149  GITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXX 328
            G TLPGA NIPA V S NWFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE DNA     
Sbjct: 28   GTTLPGACNIPANVGSCNWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERDNAELESR 87

Query: 329  XXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEV 508
                     PLVCPNYQSYFRTIEELQQKIL +KSEN RLVVQ+DNAKLA+DDFRTKYE 
Sbjct: 88   ILERSQQQEPLVCPNYQSYFRTIEELQQKILCSKSENARLVVQIDNAKLASDDFRTKYET 147

Query: 509  ERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGD 688
            E S RQLVE+D+N LRRILDELTLCK+DLE +VESL+EEL+CLK+NHE+EVN+LRSQLGD
Sbjct: 148  EVSLRQLVEADLNGLRRILDELTLCKSDLEARVESLKEELICLKQNHEQEVNTLRSQLGD 207

Query: 689  RLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQS 868
            RLN+EVDAAPTVDLN VLNETR+QYEALVETNRRDVEEW+ RQTEELNKQVVSSSEQLQS
Sbjct: 208  RLNVEVDAAPTVDLNRVLNETRAQYEALVETNRRDVEEWYIRQTEELNKQVVSSSEQLQS 267

Query: 869  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAE 1048
            YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYS QLAQVQGLIGNVE+QLAE
Sbjct: 268  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSCQLAQVQGLIGNVESQLAE 327

Query: 1049 IRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVS--- 1219
            IR+DLERQNQEYQVLLDVRARLECEINTYRGLL+SEDCKLP NPCATTNA     +S   
Sbjct: 328  IRSDLERQNQEYQVLLDVRARLECEINTYRGLLDSEDCKLPCNPCATTNACERPCISNPC 387

Query: 1220 CSQKRC 1237
             S+ RC
Sbjct: 388  VSRARC 393


>ref|NP_001076993.1| keratin, type I cuticular Ha3-I [Bos taurus].
          Length = 384

 Score =  551 bits (1421), Expect = e-157
 Identities = 290/363 (79%), Positives = 309/363 (85%)
 Frame = +2

Query: 149  GITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXX 328
            G TLPGA NIPA V S NWFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE DNA     
Sbjct: 28   GTTLPGACNIPANVGSCNWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERDNAELES- 86

Query: 329  XXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEV 508
                                R +E  QQKIL+ K+EN RLVVQ+DNAKLAADDFRTKY+ 
Sbjct: 87   --------------------RILERSQQKILANKAENARLVVQIDNAKLAADDFRTKYQT 126

Query: 509  ERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGD 688
            E   RQLVESDIN LRRILDELTLCK+DLE QVESL+EEL+CLK+NHE+EVN+LRSQLGD
Sbjct: 127  ELGLRQLVESDINGLRRILDELTLCKSDLEAQVESLKEELICLKQNHEQEVNTLRSQLGD 186

Query: 689  RLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQS 868
            RLN+EVDAAPTVDLN VLNETR+QYEALVETNRRDVEEW+ RQTEELNKQVVSSSEQLQS
Sbjct: 187  RLNVEVDAAPTVDLNRVLNETRAQYEALVETNRRDVEEWYIRQTEELNKQVVSSSEQLQS 246

Query: 869  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAE 1048
            YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYS QLAQVQGLIGNVE+QLAE
Sbjct: 247  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSCQLAQVQGLIGNVESQLAE 306

Query: 1049 IRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQ 1228
            IR+DLERQNQEYQVLLDVRARLECEINTYRGLL+SEDCKLP NPCATTNAS  S  SC  
Sbjct: 307  IRSDLERQNQEYQVLLDVRARLECEINTYRGLLDSEDCKLPCNPCATTNAS--SVGSCVT 364

Query: 1229 KRC 1237
              C
Sbjct: 365  NPC 367


>ref|NP_001069541.1| keratin, type I cuticular Ha5 [Bos taurus].
          Length = 455

 Score =  529 bits (1362), Expect = e-150
 Identities = 269/349 (77%), Positives = 295/349 (84%)
 Frame = +2

Query: 194  SGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPN 373
            +G WF EG   GNEKETMQFLNDRLASYLEKVRQLE +NA              P +CP+
Sbjct: 84   AGGWFGEGILTGNEKETMQFLNDRLASYLEKVRQLERENAELESRIHEWCEQQVPYLCPD 143

Query: 374  YQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSL 553
            YQSYF+TIEELQ+K L  KSEN RLVVQ+DNAKLAADDFRTKYE E S RQLVESD+N L
Sbjct: 144  YQSYFQTIEELQKKTLCTKSENARLVVQIDNAKLAADDFRTKYETEVSMRQLVESDMNGL 203

Query: 554  RRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLN 733
            RRILD+LTLCKADLE QVESL+EELLCLKKNHEEEVNSLR QLGDRLN+EVDAAP VDLN
Sbjct: 204  RRILDDLTLCKADLEAQVESLKEELLCLKKNHEEEVNSLRCQLGDRLNVEVDAAPPVDLN 263

Query: 734  SVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNAL 913
             VLNE R QYE LVE NRR+ E+WF  QTEELN+QVVSSSEQLQSYQAEIIELRRTVNAL
Sbjct: 264  RVLNEMRCQYETLVENNRREAEDWFNTQTEELNQQVVSSSEQLQSYQAEIIELRRTVNAL 323

Query: 914  EVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVL 1093
            E+ELQAQH++RD+LE+TL ETEARYSSQLAQ+QGLIGNVE+QLAEIR DLERQNQEYQVL
Sbjct: 324  EIELQAQHSMRDALESTLAETEARYSSQLAQMQGLIGNVESQLAEIRCDLERQNQEYQVL 383

Query: 1094 LDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRCC 1240
            LDVRARLECEINTYRGLL+SEDCKLP NPCA  ++ + S + C     C
Sbjct: 384  LDVRARLECEINTYRGLLDSEDCKLPCNPCAPDHSPSKSCLPCLPAASC 432


>ref|NP_001179454.1| keratin, type I cuticular Ha6 [Bos taurus].
          Length = 456

 Score =  507 bits (1306), Expect = e-144
 Identities = 256/332 (77%), Positives = 284/332 (85%)
 Frame = +2

Query: 194  SGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPN 373
            +G WFCEG+FNGNEKETMQFLNDRLASYLEKVRQLE +NA              P +CP+
Sbjct: 77   AGGWFCEGSFNGNEKETMQFLNDRLASYLEKVRQLERENAELESRIREWYESQAPYICPD 136

Query: 374  YQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSL 553
            YQ YF+TIEELQQKIL  K++N RLV+Q+DNAKLAADDFRTKYE E   RQLVE+D N L
Sbjct: 137  YQCYFKTIEELQQKILLTKADNARLVLQIDNAKLAADDFRTKYETELGMRQLVEADTNGL 196

Query: 554  RRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLN 733
            R+ILDELTLCKADLE QVESL+EEL+CLKKNHEEEVN+LR QLGDRLN+EVDAAP VDLN
Sbjct: 197  RQILDELTLCKADLEMQVESLKEELICLKKNHEEEVNTLRCQLGDRLNVEVDAAPPVDLN 256

Query: 734  SVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNAL 913
             +L+E R QYE LVE NRRDVE WF  QTEELN+QVVSSSEQLQ  Q EIIELRR VNAL
Sbjct: 257  KILDEMRCQYETLVENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRNVNAL 316

Query: 914  EVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVL 1093
            E+ELQAQH++R+SLE+TL ETEARYSSQLAQ+QGLIGNVEAQLAEIR DLERQNQEYQVL
Sbjct: 317  EIELQAQHSMRNSLESTLAETEARYSSQLAQMQGLIGNVEAQLAEIRCDLERQNQEYQVL 376

Query: 1094 LDVRARLECEINTYRGLLESEDCKLPSNPCAT 1189
            LDV+ARLE EI TYR LLE EDCKLP++PCAT
Sbjct: 377  LDVKARLESEIATYRRLLEGEDCKLPAHPCAT 408


>ref|XP_002696035.1| PREDICTED: keratin 36 [Bos taurus].
          Length = 456

 Score =  507 bits (1306), Expect = e-144
 Identities = 256/332 (77%), Positives = 284/332 (85%)
 Frame = +2

Query: 194  SGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPN 373
            +G WFCEG+FNGNEKETMQFLNDRLASYLEKVRQLE +NA              P +CP+
Sbjct: 77   AGGWFCEGSFNGNEKETMQFLNDRLASYLEKVRQLERENAELESRIREWYESQAPYICPD 136

Query: 374  YQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSL 553
            YQ YF+TIEELQQKIL  K++N RLV+Q+DNAKLAADDFRTKYE E   RQLVE+D N L
Sbjct: 137  YQCYFKTIEELQQKILLTKADNARLVLQIDNAKLAADDFRTKYETELGMRQLVEADTNGL 196

Query: 554  RRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLN 733
            R+ILDELTLCKADLE QVESL+EEL+CLKKNHEEEVN+LR QLGDRLN+EVDAAP VDLN
Sbjct: 197  RQILDELTLCKADLEMQVESLKEELICLKKNHEEEVNTLRCQLGDRLNVEVDAAPPVDLN 256

Query: 734  SVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNAL 913
             +L+E R QYE LVE NRRDVE WF  QTEELN+QVVSSSEQLQ  Q EIIELRR VNAL
Sbjct: 257  KILDEMRCQYETLVENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRNVNAL 316

Query: 914  EVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVL 1093
            E+ELQAQH++R+SLE+TL ETEARYSSQLAQ+QGLIGNVEAQLAEIR DLERQNQEYQVL
Sbjct: 317  EIELQAQHSMRNSLESTLAETEARYSSQLAQMQGLIGNVEAQLAEIRCDLERQNQEYQVL 376

Query: 1094 LDVRARLECEINTYRGLLESEDCKLPSNPCAT 1189
            LDV+ARLE EI TYR LLE EDCKLP++PCAT
Sbjct: 377  LDVKARLESEIATYRRLLEGEDCKLPAHPCAT 408


>ref|NP_001094772.1| keratin, type I cuticular Ha2 [Bos taurus].
          Length = 405

 Score =  478 bits (1230), Expect = e-135
 Identities = 243/339 (71%), Positives = 282/339 (83%)
 Frame = +2

Query: 173  NIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXX 352
            +I +++ S + F E  F+ NE+ET+Q LN+RLA+YLE+VRQLE +N              
Sbjct: 33   SIFSSMGSNSLFYESVFSSNERETLQLLNNRLAAYLERVRQLEQENVELERQLQEACEFQ 92

Query: 353  XPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLV 532
             P V PNY  YF+ IEELQQKIL +K+EN R+VVQ+DN KLAADDFR+KYE+E   RQLV
Sbjct: 93   EPTVGPNYFRYFQIIEELQQKILYSKAENARIVVQIDNTKLAADDFRSKYEMELGLRQLV 152

Query: 533  ESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDA 712
            E+D N LRRILDELTLCKADLE QVESL+EEL+CLKKNHEEEV +LR QLGDRLNIEVDA
Sbjct: 153  EADTNGLRRILDELTLCKADLEMQVESLKEELMCLKKNHEEEVGALRCQLGDRLNIEVDA 212

Query: 713  APTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIEL 892
               VDLN VL E R +YEALVETNRRDVEEWF +Q EELN+QVV+SSEQLQSYQ++II+L
Sbjct: 213  VSPVDLNKVLEEMRCRYEALVETNRRDVEEWFNKQMEELNQQVVTSSEQLQSYQSDIIDL 272

Query: 893  RRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQ 1072
            +RTVN LE+ELQ QH+LRDSLENTLTETEARY SQLAQ+QGL+ NVE+QLAEIR DLERQ
Sbjct: 273  KRTVNTLEIELQTQHSLRDSLENTLTETEARYGSQLAQMQGLVTNVESQLAEIRCDLERQ 332

Query: 1073 NQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCAT 1189
            NQEY+VLLDVRARLE EINTYRGLL+SEDCKLP NPC+T
Sbjct: 333  NQEYRVLLDVRARLEAEINTYRGLLDSEDCKLPGNPCST 371


>ref|NP_001098888.1| keratin, type I cytoskeletal 40 [Bos taurus].
          Length = 431

 Score =  457 bits (1177), Expect = e-129
 Identities = 236/365 (64%), Positives = 282/365 (77%), Gaps = 6/365 (1%)
 Frame = +2

Query: 164  GARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXX 343
            G+ NIP  V +  W  +G FN NEKETMQFLNDRLASYLEKVR LE  NA          
Sbjct: 66   GSCNIPCVVGNCAWCEDGVFNSNEKETMQFLNDRLASYLEKVRGLEELNAELECRIREQC 125

Query: 344  XXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSR 523
                PLVCP+YQ YF TIE+LQQKIL  K+EN RL VQ+DN KLAADDFR+KYE E S R
Sbjct: 126  EEDVPLVCPDYQCYFDTIEDLQQKILCTKAENCRLAVQLDNCKLAADDFRSKYESELSLR 185

Query: 524  QLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIE 703
            QLVE+DI+ LR IL ELT+C++DLE  VESL+++LLCLKK+HEEEVN LR QLGDRL++E
Sbjct: 186  QLVETDISGLRGILGELTVCRSDLEAHVESLKDDLLCLKKSHEEEVNVLRGQLGDRLSVE 245

Query: 704  VDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEI 883
            +D APT DLN VL+E R QYE ++  NRRDVEEWFA QTEELN+Q +SS+EQLQ  Q EI
Sbjct: 246  LDTAPTTDLNRVLDEMRCQYETVLANNRRDVEEWFAAQTEELNQQQLSSAEQLQGCQTEI 305

Query: 884  IELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADL 1063
            +EL+RT N LE+ELQAQ +L +SLE T+ ETEA+YSS+LAQ+Q LI NVE QLAEIR DL
Sbjct: 306  LELKRTANTLEIELQAQQSLTESLECTVAETEAQYSSELAQIQCLIDNVENQLAEIRCDL 365

Query: 1064 ERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNAS------ANSYVSCS 1225
            ERQNQEY+VLLD +ARLECEINTY+GLL+SED +LP NPC+ T+ S       ++YV C+
Sbjct: 366  ERQNQEYRVLLDTKARLECEINTYQGLLDSEDSRLPCNPCSATSMSNDTCEPCSAYVICT 425

Query: 1226 QKRCC 1240
             +  C
Sbjct: 426  VENSC 430


>ref|XP_002696066.1| PREDICTED: keratin 38-like [Bos taurus].
          Length = 432

 Score =  453 bits (1166), Expect = e-127
 Identities = 237/375 (63%), Positives = 283/375 (75%), Gaps = 15/375 (4%)
 Frame = +2

Query: 158  LPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXX 337
            LPG  +IP        F EG FN +EKETMQFLNDRLASYLE+VR+LE DNA        
Sbjct: 58   LPGTCDIPGNSGICGTFGEGFFNSHEKETMQFLNDRLASYLERVRRLERDNAELESQIRE 117

Query: 338  XXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERS 517
                    VCP+YQS+FR IEELQQKIL  KSEN +LVVQ+DNAKLAADDFRTK++ E S
Sbjct: 118  LSKCPESTVCPDYQSHFRIIEELQQKILCVKSENNKLVVQIDNAKLAADDFRTKFQTEHS 177

Query: 518  SRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLN 697
             RQLVE+D+  +RR LD+LTL KADLE Q+ES +EELLCLKKNHE+EV++L+ QLGD+L 
Sbjct: 178  LRQLVEADVCGMRRALDDLTLAKADLEAQLESRKEELLCLKKNHEQEVHTLKCQLGDKLK 237

Query: 698  IEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQA 877
            IE+D  PTVDL  VL E R QYEA+VETN RDVE+WF  Q+E ++ Q +S SE+LQ  Q+
Sbjct: 238  IELDVEPTVDLGRVLEEMRGQYEAMVETNLRDVEQWFQTQSEGISLQAMSCSEELQCCQS 297

Query: 878  EIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRA 1057
            EI+ELRRTVNALEVELQAQH L+D L+N+L E+EAR+ ++LAQ+Q LI N+E QL+EIRA
Sbjct: 298  EILELRRTVNALEVELQAQHTLKDCLQNSLCESEARFGTELAQMQSLISNIEEQLSEIRA 357

Query: 1058 DLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCAT--------TNASANSY 1213
            DLERQNQEYQVLLDV+ARLECEI TYR LLE+EDCKLP NPCAT        ++A  + Y
Sbjct: 358  DLERQNQEYQVLLDVKARLECEIATYRNLLENEDCKLPCNPCATPVSSTCVGSSACTSCY 417

Query: 1214 V-------SCSQKRC 1237
                    SCS  RC
Sbjct: 418  PCLSGPAGSCSSPRC 432


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,559,779
Number of extensions: 886072
Number of successful extensions: 5789
Number of sequences better than 1.0e-05: 134
Number of HSP's gapped: 5411
Number of HSP's successfully gapped: 149
Length of query: 466
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 360
Effective length of database: 14,174,046
Effective search space: 5102656560
Effective search space used: 5102656560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012159
         (1398 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003131478.1| PREDICTED: LOW QUALITY PROTEIN: keratin, typ...   721   0.0  
Alignment   gi|XP_003131489.2| PREDICTED: keratin, type I cuticular Ha3-II ...   624   e-179
Alignment   gi|XP_003358093.1| PREDICTED: keratin, type I microfibrillar, 4...   622   e-178
Alignment   gi|XP_003131477.1| PREDICTED: keratin, type I microfibrillar 48...   620   e-178
Alignment   gi|XP_003131480.2| PREDICTED: keratin, type I cuticular Ha6 iso...   511   e-145
Alignment   gi|XP_003131482.2| PREDICTED: keratin, type I cuticular Ha5-lik...   510   e-145
Alignment   gi|XP_003131481.1| PREDICTED: keratin, type I cuticular Ha2 [Su...   509   e-144
Alignment   gi|XP_003131529.2| PREDICTED: keratin, type I cytoskeletal 39 [...   415   e-116
Alignment   gi|XP_003131528.2| PREDICTED: keratin, type I cytoskeletal 40-l...   385   e-107
Alignment   gi|XP_003131485.1| PREDICTED: keratin, type I cytoskeletal 19-l...   353   1e-97

>ref|XP_003131478.1| PREDICTED: LOW QUALITY PROTEIN: keratin, type I cuticular Ha4-like
            [Sus scrofa].
          Length = 435

 Score =  721 bits (1860), Expect = 0.0
 Identities = 374/413 (90%), Positives = 374/413 (90%)
 Frame = +2

Query: 2    KPYHLHLHLHQFTCSSITSPSAMHYXXXXXXXXXXXXXXXXXXXXXXXQGITLPGARNIP 181
            KP HLHLHLHQFTCSSITSPSAMHY                       QGITLPGARNIP
Sbjct: 23   KPTHLHLHLHQFTCSSITSPSAMHYSRCLPNLSCRSSCSSRPCVPSSCQGITLPGARNIP 82

Query: 182  ATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPL 361
            ATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLE DNA              PL
Sbjct: 83   ATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPL 142

Query: 362  VCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESD 541
            VCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESD
Sbjct: 143  VCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESD 202

Query: 542  INSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPT 721
            INSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPT
Sbjct: 203  INSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPT 262

Query: 722  VDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRT 901
            VDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRT
Sbjct: 263  VDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRT 322

Query: 902  VNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQE 1081
            VNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQE
Sbjct: 323  VNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQE 382

Query: 1082 YQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRCC 1240
            YQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRCC
Sbjct: 383  YQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRCC 435


>ref|XP_003131489.2| PREDICTED: keratin, type I cuticular Ha3-II [Sus scrofa].
          Length = 439

 Score =  624 bits (1609), Expect = e-179
 Identities = 326/375 (86%), Positives = 335/375 (89%), Gaps = 6/375 (1%)
 Frame = +2

Query: 146  QGITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXX 325
            QGITLPGA NIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLE DNA    
Sbjct: 61   QGITLPGACNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLERDNAELER 120

Query: 326  XXXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYE 505
                      PLVCPNYQSYFRTIEELQQKILS KSEN RLVVQ+DNAKLAADDFRTKY+
Sbjct: 121  QIQERSQQQEPLVCPNYQSYFRTIEELQQKILSGKSENARLVVQIDNAKLAADDFRTKYQ 180

Query: 506  VERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLG 685
             E   RQLVESDINSLRR LDELTLCKADLE QVESL+EELLCLK+NHE+EVNSLRSQLG
Sbjct: 181  TELGLRQLVESDINSLRRTLDELTLCKADLEAQVESLKEELLCLKQNHEQEVNSLRSQLG 240

Query: 686  DRLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQ 865
            DRLNIEVDAAPTVDLNSVL+ETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQ
Sbjct: 241  DRLNIEVDAAPTVDLNSVLSETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQ 300

Query: 866  SYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLA 1045
            SYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLA
Sbjct: 301  SYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLA 360

Query: 1046 EIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNAS------AN 1207
            EIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNA       ++
Sbjct: 361  EIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNAQPIGHCVSS 420

Query: 1208 SYVSCSQKRCC*SLN 1252
            S   C  + C  S N
Sbjct: 421  SCTPCGPRTCFKSCN 435


>ref|XP_003358093.1| PREDICTED: keratin, type I microfibrillar, 47.6 kDa-like [Sus
            scrofa].
          Length = 403

 Score =  622 bits (1604), Expect = e-178
 Identities = 321/364 (88%), Positives = 329/364 (90%)
 Frame = +2

Query: 146  QGITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXX 325
            QGITLPGA NIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLE DNA    
Sbjct: 26   QGITLPGACNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLERDNAELER 85

Query: 326  XXXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYE 505
                      PLVCPNYQSYFRTIEELQQKIL +KSEN RLVVQ+DNAKLA+DDFRTKYE
Sbjct: 86   QIQERSQQQEPLVCPNYQSYFRTIEELQQKILCSKSENARLVVQIDNAKLASDDFRTKYE 145

Query: 506  VERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLG 685
             E   RQLVESD+N LRRILDELTLCKADLE QVESL+EELLCLK+NHE+EVNSLRSQLG
Sbjct: 146  TELGLRQLVESDLNGLRRILDELTLCKADLEAQVESLKEELLCLKQNHEQEVNSLRSQLG 205

Query: 686  DRLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQ 865
            DRLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQ
Sbjct: 206  DRLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQ 265

Query: 866  SYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLA 1045
            SYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLA
Sbjct: 266  SYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLA 325

Query: 1046 EIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCS 1225
            EIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLP NPCATTNA   +   C 
Sbjct: 326  EIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPCNPCATTNAYEKTVGPCV 385

Query: 1226 QKRC 1237
               C
Sbjct: 386  SNPC 389


>ref|XP_003131477.1| PREDICTED: keratin, type I microfibrillar 48 kDa, component 8C-1-like
            [Sus scrofa].
          Length = 414

 Score =  620 bits (1599), Expect = e-178
 Identities = 321/351 (91%), Positives = 325/351 (92%)
 Frame = +2

Query: 146  QGITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXX 325
            QGITLPGA NIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLE DNA    
Sbjct: 27   QGITLPGACNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLERDNAELER 86

Query: 326  XXXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYE 505
                      PLVCPNYQSYFRTIEELQQKIL +KSEN RLVVQ+DNAKLAADDFRTKYE
Sbjct: 87   QIQERSQQQEPLVCPNYQSYFRTIEELQQKILCSKSENARLVVQIDNAKLAADDFRTKYE 146

Query: 506  VERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLG 685
             E   RQLVESDIN LRRILDELTLCKADLE QVESL+EELLCLK NHEEEVNSLRSQLG
Sbjct: 147  TELGLRQLVESDINGLRRILDELTLCKADLEAQVESLKEELLCLKSNHEEEVNSLRSQLG 206

Query: 686  DRLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQ 865
            DRLNIEVDAAPTVDLNSVL+ETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQ
Sbjct: 207  DRLNIEVDAAPTVDLNSVLSETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQ 266

Query: 866  SYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLA 1045
            SYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLA
Sbjct: 267  SYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLA 326

Query: 1046 EIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNA 1198
            EIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLP NPCATTNA
Sbjct: 327  EIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPCNPCATTNA 377


>ref|XP_003131480.2| PREDICTED: keratin, type I cuticular Ha6 isoform 2 [Sus scrofa].
          Length = 459

 Score =  511 bits (1317), Expect = e-145
 Identities = 261/347 (75%), Positives = 288/347 (82%)
 Frame = +2

Query: 149  GITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXX 328
            G  L    N  +   SG WFCEGAFNGNEKETMQFLNDRLA+YLEKVRQLE DNA     
Sbjct: 65   GSCLSSGYNSSSFAGSGGWFCEGAFNGNEKETMQFLNDRLANYLEKVRQLERDNAELESR 124

Query: 329  XXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEV 508
                     P +CP+YQ+YF+TIEELQQKIL  K++N RLV+Q+DNAKLAADDFRTKYE 
Sbjct: 125  IREWYESQIPYICPDYQAYFKTIEELQQKILITKADNARLVLQIDNAKLAADDFRTKYET 184

Query: 509  ERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGD 688
            E   RQLVE+D N LRRILDELTLCKADLE QVESL+EEL+CLKKNHEEEVN+LR QLGD
Sbjct: 185  ELGMRQLVEADTNGLRRILDELTLCKADLEMQVESLKEELICLKKNHEEEVNTLRCQLGD 244

Query: 689  RLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQS 868
            RLN+EVDAAP VDLN +L++ R QYEALVE NRRDVE WF  QTEELN+QVVSSSEQLQ 
Sbjct: 245  RLNVEVDAAPPVDLNKILDDMRCQYEALVENNRRDVEAWFNTQTEELNQQVVSSSEQLQC 304

Query: 869  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAE 1048
             Q EIIELRR VNALE+ELQAQH++R+SLE TL ETEARYSSQLAQ+QGLI NVEAQLAE
Sbjct: 305  CQTEIIELRRNVNALEIELQAQHSMRNSLEATLAETEARYSSQLAQMQGLISNVEAQLAE 364

Query: 1049 IRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCAT 1189
            IR DLERQNQEYQVLLDV+ARLE EI TYR LLE EDCKLP++PCAT
Sbjct: 365  IRCDLERQNQEYQVLLDVKARLESEIATYRRLLEGEDCKLPAHPCAT 411


>ref|XP_003131482.2| PREDICTED: keratin, type I cuticular Ha5-like [Sus scrofa].
          Length = 493

 Score =  510 bits (1313), Expect = e-145
 Identities = 263/363 (72%), Positives = 294/363 (80%)
 Frame = +2

Query: 152  ITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXX 331
            + LP      +    G WF EG   GNEKETMQ LNDRLASYLEKVR+LE +N+      
Sbjct: 108  LCLPSGGFASSYSMGGGWFGEGILTGNEKETMQSLNDRLASYLEKVRRLERENSELEGRI 167

Query: 332  XXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVE 511
                    P +CP+YQSYF+TIEELQ+K L  K+EN RLVVQ+DNAKLAADDFR+KYE E
Sbjct: 168  REWCEQQEPYLCPDYQSYFQTIEELQKKTLCTKAENARLVVQIDNAKLAADDFRSKYETE 227

Query: 512  RSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDR 691
             S RQLVESD+N LRRILD+LTLCKADLE QVESL+EELLCLKKNHEEEVNSLR QLGDR
Sbjct: 228  VSMRQLVESDMNGLRRILDDLTLCKADLEAQVESLKEELLCLKKNHEEEVNSLRCQLGDR 287

Query: 692  LNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSY 871
            LN+EVDAAP VDLN VL+E R QYE LVE NRRD E+WF  QTEELN+QVV+SSEQLQS 
Sbjct: 288  LNVEVDAAPPVDLNRVLDEMRCQYETLVENNRRDAEDWFNTQTEELNQQVVTSSEQLQSC 347

Query: 872  QAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEI 1051
            QA+I+ELRR VNALE+ELQAQH++RD+LE+TL ETEARYSSQLAQ+QGLIGNVEAQLAEI
Sbjct: 348  QADIMELRRNVNALEIELQAQHSMRDALESTLAETEARYSSQLAQMQGLIGNVEAQLAEI 407

Query: 1052 RADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQK 1231
            RADLERQNQEYQVLLDVRARLE EINTYRGLLESEDCKLP NPCA  +A +   + C   
Sbjct: 408  RADLERQNQEYQVLLDVRARLESEINTYRGLLESEDCKLPCNPCAPGHAPSKPCLPCLPA 467

Query: 1232 RCC 1240
              C
Sbjct: 468  ASC 470


>ref|XP_003131481.1| PREDICTED: keratin, type I cuticular Ha2 [Sus scrofa].
          Length = 460

 Score =  509 bits (1311), Expect = e-144
 Identities = 261/350 (74%), Positives = 292/350 (83%)
 Frame = +2

Query: 182  ATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPL 361
            ++V +   + EG+FNGNEKET+QFLNDRLA YLEKVRQLE DNA              P 
Sbjct: 91   SSVGTYGGYHEGSFNGNEKETLQFLNDRLAKYLEKVRQLEQDNAELESKIQEASQSQVPT 150

Query: 362  VCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESD 541
            +  NY SYFRTIEELQQKIL  ++EN R +V +DNAKLAADDFRTKYE E + RQLVE+D
Sbjct: 151  LSSNYHSYFRTIEELQQKILCTRAENARTIVHMDNAKLAADDFRTKYETELAMRQLVEAD 210

Query: 542  INSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPT 721
             N LRRILDELTLCKADLE QVESL+EEL+CLKKNHEEEV +L+ QLGDRLNIEVDAAP 
Sbjct: 211  TNGLRRILDELTLCKADLEMQVESLKEELMCLKKNHEEEVGALQGQLGDRLNIEVDAAPP 270

Query: 722  VDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRT 901
            VDLN VL E R QYEALVE+NRRDVEEWF  Q EELN+QV +SSEQLQSYQ++ I+LRRT
Sbjct: 271  VDLNRVLEEMRCQYEALVESNRRDVEEWFTMQMEELNQQVATSSEQLQSYQSDAIDLRRT 330

Query: 902  VNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQE 1081
            VN LE+ELQAQH+LRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQE
Sbjct: 331  VNMLEIELQAQHSLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQE 390

Query: 1082 YQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQK 1231
            YQVLLDVRARLECEINTYRGLLESEDCKLP NPC+T +   ++  S + +
Sbjct: 391  YQVLLDVRARLECEINTYRGLLESEDCKLPCNPCSTASCPQSASSSSAPR 440


>ref|XP_003131529.2| PREDICTED: keratin, type I cytoskeletal 39 [Sus scrofa].
          Length = 492

 Score =  415 bits (1067), Expect = e-116
 Identities = 215/328 (65%), Positives = 256/328 (78%)
 Frame = +2

Query: 206  FCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPNYQSY 385
            +CE   +  EKETMQFLNDRLA+YLEKVR LE +NA              P++CP+YQS 
Sbjct: 87   WCEEGIHCKEKETMQFLNDRLANYLEKVRMLERENAALECKIQEECDKELPVMCPDYQSC 146

Query: 386  FRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLRRIL 565
            +  IEELQQKIL  K+EN+RLV Q+DN KLAADD R KYE E S RQLVE+D N LR+IL
Sbjct: 147  YAIIEELQQKILCTKAENSRLVSQIDNTKLAADDLRAKYEAEVSLRQLVEADANGLRQIL 206

Query: 566  DELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLN 745
            + LTL +ADLE QV SL+EELLCLK NHEEE++SL+SQLG+RL+IEV AAP++DLN VL 
Sbjct: 207  NALTLGEADLEAQVRSLKEELLCLKSNHEEEISSLQSQLGERLSIEVTAAPSIDLNRVLQ 266

Query: 746  ETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVEL 925
            E R QYE++VETNRRDVE+WF  Q E+LN+QV +S++Q Q  Q EIIELR TVNALE EL
Sbjct: 267  EMRCQYESVVETNRRDVEQWFCTQMEDLNQQVATSTQQQQCCQREIIELRSTVNALENEL 326

Query: 926  QAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLLDVR 1105
            QA H +RDS E  L ETEARY++ LAQ+Q LI N+EAQLAEIR  LERQNQEY++LLD+R
Sbjct: 327  QALHRMRDSQEWALAETEARYAALLAQIQRLIDNLEAQLAEIRGALERQNQEYEILLDIR 386

Query: 1106 ARLECEINTYRGLLESEDCKLPSNPCAT 1189
            +RLECEI TYR LLE  D KLP +PCAT
Sbjct: 387  SRLECEITTYRSLLERSDGKLPCHPCAT 414


>ref|XP_003131528.2| PREDICTED: keratin, type I cytoskeletal 40-like [Sus scrofa].
          Length = 464

 Score =  385 bits (988), Expect = e-107
 Identities = 200/313 (63%), Positives = 242/313 (77%)
 Frame = +2

Query: 227  GNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPNYQSYFRTIEEL 406
            GN KETM+ LNDRLASYL+KVR LE  N                    +Y  Y  +I  L
Sbjct: 71   GNGKETMRNLNDRLASYLDKVRALEEANVKLESCILKWHEQRDSGSKQDYSQYEESISRL 130

Query: 407  QQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLRRILDELTLCK 586
            Q++IL  K+EN+RL VQ+DN KLAADDFR+KY+ E S RQLVE DI+ LR IL EL+LC+
Sbjct: 131  QEQILCTKAENSRLAVQLDNCKLAADDFRSKYDAELSLRQLVEMDISGLRGILGELSLCQ 190

Query: 587  ADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLNETRSQYE 766
            +DLE  VESL+++LLCLKKNHEEEVN LR QLGDRL++E++ APTVDLN VL+E R QYE
Sbjct: 191  SDLEAHVESLKDDLLCLKKNHEEEVNVLREQLGDRLSVELNTAPTVDLNKVLDEMRGQYE 250

Query: 767  ALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLR 946
             ++  N RD+EEWFA QTEELN+Q +SS+EQLQ  Q E++EL+RT  ALE+ELQAQ +L 
Sbjct: 251  TVLANNHRDMEEWFAVQTEELNQQQLSSAEQLQGCQTEMLELKRTATALEIELQAQQSLT 310

Query: 947  DSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLLDVRARLECEI 1126
            +SLE T+ ETEA+YSSQLAQ+Q LI +VE QLAEIR DLERQNQEY+VLLD +ARLECEI
Sbjct: 311  ESLECTVAETEAQYSSQLAQMQRLIDSVETQLAEIRCDLERQNQEYEVLLDTKARLECEI 370

Query: 1127 NTYRGLLESEDCK 1165
             TYRGLLESEDC+
Sbjct: 371  TTYRGLLESEDCR 383


>ref|XP_003131485.1| PREDICTED: keratin, type I cytoskeletal 19-like [Sus scrofa].
          Length = 404

 Score =  353 bits (907), Expect = 1e-97
 Identities = 175/316 (55%), Positives = 235/316 (74%)
 Frame = +2

Query: 212  EGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPNYQSYFR 391
            +G   GNEK TMQ LNDRLASYLEKVR LE  N               P    +Y  YF+
Sbjct: 77   DGLLAGNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFK 136

Query: 392  TIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLRRILDE 571
            TIE+L+ KIL A  EN+++V+Q+DNA+LAADDFRTK+E E++ R  VE+DIN LRR+LDE
Sbjct: 137  TIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDE 196

Query: 572  LTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLNET 751
            LTL + DLE Q+E L+EEL  LKKNHEEE+++L+ Q+G ++++EVD+AP +DL  +L++ 
Sbjct: 197  LTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDM 256

Query: 752  RSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQA 931
            RSQYE + E NR+D E WF  +TEELN++V   +EQLQ  + E+ +LRRT+  LE+ELQ+
Sbjct: 257  RSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQS 316

Query: 932  QHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLLDVRAR 1111
            Q +++ +LE TL ETEAR+ +QLAQ+Q LI  +EAQL+++RAD ERQNQEYQ L+D++ R
Sbjct: 317  QLSMKAALEGTLAETEARFGAQLAQIQALISGIEAQLSDVRADTERQNQEYQHLMDIKTR 376

Query: 1112 LECEINTYRGLLESED 1159
            LE EI TYR LLE +D
Sbjct: 377  LEQEIATYRNLLEGQD 392


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,868,994
Number of extensions: 569419
Number of successful extensions: 3566
Number of sequences better than 1.0e-05: 83
Number of HSP's gapped: 3365
Number of HSP's successfully gapped: 88
Length of query: 466
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 364
Effective length of database: 8,804,438
Effective search space: 3204815432
Effective search space used: 3204815432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012159
         (1398 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081839.1| keratin, type I cuticular Ha4 [Mus musculus].        575   e-164
Alignment   gi|NP_082259.2| keratin, type I cuticular Ha3-I [Mus musculus].      567   e-162
Alignment   gi|NP_034789.2| keratin, type I cuticular Ha1 [Mus musculus].        566   e-161
Alignment   gi|NP_038598.1| keratin, type I cuticular Ha3-II [Mus musculus].     565   e-161
Alignment   gi|NP_058576.2| keratin, type I cuticular Ha5 [Mus musculus].        504   e-143
Alignment   gi|NP_001167570.1| keratin, type I cuticular Ha6 [Mus musculus].     494   e-140
Alignment   gi|NP_001152846.2| keratin, type I cuticular Ha2 [Mus musculus].     479   e-135
Alignment   gi|NP_001034755.1| keratin, type I cytoskeletal 40 [Mus musculu...   449   e-126
Alignment   gi|NP_998895.2| keratin, type I cytoskeletal 39 [Mus musculus].      419   e-117
Alignment   gi|NP_997648.2| keratin, type I cytoskeletal 42 [Mus musculus].      367   e-102

>ref|NP_081839.1| keratin, type I cuticular Ha4 [Mus musculus].
          Length = 392

 Score =  575 bits (1483), Expect = e-164
 Identities = 297/365 (81%), Positives = 318/365 (87%), Gaps = 1/365 (0%)
 Frame = +2

Query: 149  GITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXX 328
            G TLPGA NIPA V + NWFCEG+FNGNEKETMQFLNDRLASY+EKVRQLE +NA     
Sbjct: 28   GCTLPGACNIPANVGNCNWFCEGSFNGNEKETMQFLNDRLASYMEKVRQLERENAELECR 87

Query: 329  XXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEV 508
                     PLVCP YQ+YFRTIEELQQKIL AKSEN RLVVQ+DNAKLA+DDFRTKY+ 
Sbjct: 88   IQERNQQQDPLVCPAYQAYFRTIEELQQKILCAKSENARLVVQIDNAKLASDDFRTKYQT 147

Query: 509  ERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGD 688
            E S RQLVE+DINSLRRILDELTLCK+DLE QVESLREELLCLKKNHEEEVN+LR QLGD
Sbjct: 148  ELSMRQLVEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEEVNTLRCQLGD 207

Query: 689  RLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQS 868
            RLN+EVDAAPTVDLN VLNETR QYEALVETNRR+VEEWF  Q+EELNKQVVSSSEQLQS
Sbjct: 208  RLNVEVDAAPTVDLNRVLNETRCQYEALVETNRREVEEWFTTQSEELNKQVVSSSEQLQS 267

Query: 869  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAE 1048
             QAEIIELRRTVNALE+ELQAQH +R+SLENTLTE+EARYSSQL+QVQ LI NVE+QL E
Sbjct: 268  CQAEIIELRRTVNALEIELQAQHCMRNSLENTLTESEARYSSQLSQVQCLITNVESQLGE 327

Query: 1049 IRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSC-S 1225
            IRADLERQNQEYQVLLDVRARLECEINTYR LLESEDC LP NPCATTNAS +    C S
Sbjct: 328  IRADLERQNQEYQVLLDVRARLECEINTYRSLLESEDCNLPCNPCATTNASGSCCGPCGS 387

Query: 1226 QKRCC 1240
             KRCC
Sbjct: 388  SKRCC 392


>ref|NP_082259.2| keratin, type I cuticular Ha3-I [Mus musculus].
          Length = 404

 Score =  567 bits (1461), Expect = e-162
 Identities = 290/363 (79%), Positives = 313/363 (86%)
 Frame = +2

Query: 149  GITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXX 328
            G TLPGA NIPA V + NWFCEG+FNGNEKETMQFLNDRLASY+EKVRQLE +NA     
Sbjct: 28   GCTLPGACNIPANVGNCNWFCEGSFNGNEKETMQFLNDRLASYMEKVRQLERENAELECR 87

Query: 329  XXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEV 508
                     PLVCP YQ+YFRTIEELQQKIL  KSEN RLVVQ+DNAKLA+DDFRTKYE 
Sbjct: 88   IQERNQQQDPLVCPAYQAYFRTIEELQQKILCGKSENARLVVQIDNAKLASDDFRTKYET 147

Query: 509  ERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGD 688
            E S RQLVE+DINSLRRILDELTLCK+DLE QVESL+EELLCLK+NHE+EVN+LR QLGD
Sbjct: 148  ELSLRQLVEADINSLRRILDELTLCKSDLEAQVESLKEELLCLKQNHEQEVNTLRCQLGD 207

Query: 689  RLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQS 868
            RLN+EVDAAPTVDLN VLNETR QYEALVETNRR+VEEW+  QTEELNKQVVSSSEQLQS
Sbjct: 208  RLNVEVDAAPTVDLNRVLNETRCQYEALVETNRREVEEWYTTQTEELNKQVVSSSEQLQS 267

Query: 869  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAE 1048
             QAEIIELRRTVNALE+ELQAQH LR+SLENTLTE+EARYSSQL+QVQ LI NVE+QL E
Sbjct: 268  CQAEIIELRRTVNALEIELQAQHELRNSLENTLTESEARYSSQLSQVQCLITNVESQLGE 327

Query: 1049 IRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQ 1228
            IRADLERQNQEYQVLLD+R+RLECEINTYRGLLESEDCKLP NPCATTNA       C  
Sbjct: 328  IRADLERQNQEYQVLLDIRSRLECEINTYRGLLESEDCKLPCNPCATTNACDKPIGPCVP 387

Query: 1229 KRC 1237
              C
Sbjct: 388  NPC 390


>ref|NP_034789.2| keratin, type I cuticular Ha1 [Mus musculus].
          Length = 416

 Score =  567 bits (1460), Expect = e-161
 Identities = 290/363 (79%), Positives = 312/363 (85%)
 Frame = +2

Query: 149  GITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXX 328
            G TLPGA NIPA V + NWFCEG+FNGNEKETMQFLNDRLASY+EKVRQLE +NA     
Sbjct: 28   GCTLPGACNIPANVGNCNWFCEGSFNGNEKETMQFLNDRLASYMEKVRQLERENAELECR 87

Query: 329  XXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEV 508
                     PLVCP YQ+YFRTIEELQQKIL +KSEN RLVVQ+DNAKLAADDFRTKYE 
Sbjct: 88   IQERNQQQDPLVCPAYQAYFRTIEELQQKILCSKSENARLVVQIDNAKLAADDFRTKYET 147

Query: 509  ERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGD 688
            E   RQLVESDIN LRRILDELTLCK+DLE QVESL+EELLCLK+NHEEEVN+LR QLGD
Sbjct: 148  ELGLRQLVESDINGLRRILDELTLCKSDLEAQVESLKEELLCLKRNHEEEVNTLRCQLGD 207

Query: 689  RLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQS 868
            RLN+EVDAAPTVDLN VLNETR QYEA+VETNRR+VEEWF  QTEELNKQVVSSSEQLQS
Sbjct: 208  RLNVEVDAAPTVDLNRVLNETRCQYEAMVETNRREVEEWFTTQTEELNKQVVSSSEQLQS 267

Query: 869  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAE 1048
             QAEIIELRRTVNALE+ELQAQH +R+SLENTLTE+EARYSSQL+QVQ LI NVE+QL E
Sbjct: 268  CQAEIIELRRTVNALEIELQAQHCMRNSLENTLTESEARYSSQLSQVQCLITNVESQLGE 327

Query: 1049 IRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQ 1228
            IRADLERQNQEYQVLLDV+ARLECEINTYRGLLESEDCKLP NPCAT+NA       C  
Sbjct: 328  IRADLERQNQEYQVLLDVKARLECEINTYRGLLESEDCKLPCNPCATSNACGKPIGPCVS 387

Query: 1229 KRC 1237
              C
Sbjct: 388  NPC 390


>ref|NP_038598.1| keratin, type I cuticular Ha3-II [Mus musculus].
          Length = 404

 Score =  565 bits (1455), Expect = e-161
 Identities = 290/363 (79%), Positives = 312/363 (85%)
 Frame = +2

Query: 149  GITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXX 328
            G TLPGA NIPA V + NWFCEG+FNGNE+ETMQFLNDRLASY+EKVRQLE +NA     
Sbjct: 28   GCTLPGACNIPANVGNCNWFCEGSFNGNERETMQFLNDRLASYMEKVRQLERENAELECK 87

Query: 329  XXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEV 508
                     PLVCP YQ+YFRTIEELQQKIL  KSEN RLVVQ+DNAKLAADDFRTKYE 
Sbjct: 88   IQERNQQQDPLVCPAYQAYFRTIEELQQKILCGKSENGRLVVQIDNAKLAADDFRTKYES 147

Query: 509  ERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGD 688
            E S RQLVESD+N LRRILDELTLCK+DLE QVESLR+ELLCLK+NHEEEVN+LR QLGD
Sbjct: 148  ELSLRQLVESDLNGLRRILDELTLCKSDLEAQVESLRQELLCLKQNHEEEVNTLRCQLGD 207

Query: 689  RLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQS 868
            RLN+EVDAAPTVDLN VLNETR QYEALVETNRR+VEEWF  QTEELNKQVVSSSEQLQS
Sbjct: 208  RLNVEVDAAPTVDLNRVLNETRCQYEALVETNRREVEEWFTTQTEELNKQVVSSSEQLQS 267

Query: 869  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAE 1048
             QAEIIELRRTVNALE+ELQAQH++R+SLENTL E+EARYSSQL+QVQ LI NVE+QL E
Sbjct: 268  CQAEIIELRRTVNALEIELQAQHSMRNSLENTLAESEARYSSQLSQVQCLITNVESQLGE 327

Query: 1049 IRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQ 1228
            IRADLERQNQEYQVLLDV+ARLECEINTYRGLLESEDCKLP NPCATTNA       C  
Sbjct: 328  IRADLERQNQEYQVLLDVKARLECEINTYRGLLESEDCKLPCNPCATTNACDKPIGPCVT 387

Query: 1229 KRC 1237
              C
Sbjct: 388  NPC 390


>ref|NP_058576.2| keratin, type I cuticular Ha5 [Mus musculus].
          Length = 455

 Score =  504 bits (1298), Expect = e-143
 Identities = 258/350 (73%), Positives = 290/350 (82%)
 Frame = +2

Query: 191  SSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCP 370
            + G WF EG   GNEKETMQ LNDRLASYLEKVRQLE +NA              P +CP
Sbjct: 83   TGGGWFGEGILTGNEKETMQSLNDRLASYLEKVRQLEQENASLESRIREWCEQQVPYMCP 142

Query: 371  NYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINS 550
            +YQSYFRT+EELQ+K L +K+EN RLVVQ+DNAKLAADDFRTKYE E S RQLVE+DIN 
Sbjct: 143  DYQSYFRTMEELQKKTLCSKAENARLVVQIDNAKLAADDFRTKYETEVSLRQLVEADING 202

Query: 551  LRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDL 730
            LRRILD+LTLCKADLE QVESL+EELLCLKKNHEEEVNSLR QLGDRLN+EVDAAP VDL
Sbjct: 203  LRRILDDLTLCKADLEAQVESLKEELLCLKKNHEEEVNSLRCQLGDRLNVEVDAAPPVDL 262

Query: 731  NSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNA 910
            N VL+E R QYE LVE NRRD E+W+  QTEELN+QVVSSSEQLQS Q++IIELRRTVN+
Sbjct: 263  NRVLDEMRCQYETLVENNRRDAEDWYDTQTEELNQQVVSSSEQLQSCQSDIIELRRTVNS 322

Query: 911  LEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQV 1090
            LE+ELQAQ ++RD+L++TL ETE RYSSQLAQ+Q +IGNVE+QL EIRADLERQNQEYQV
Sbjct: 323  LEIELQAQQSMRDALDSTLAETEGRYSSQLAQMQCMIGNVESQLGEIRADLERQNQEYQV 382

Query: 1091 LLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRCC 1240
            LLDVRARLECEINTYRGLLESED KLP NPCA   +S+ S + C     C
Sbjct: 383  LLDVRARLECEINTYRGLLESEDSKLPCNPCAPDYSSSKSCLPCLPAVSC 432


>ref|NP_001167570.1| keratin, type I cuticular Ha6 [Mus musculus].
          Length = 473

 Score =  494 bits (1272), Expect = e-140
 Identities = 250/332 (75%), Positives = 280/332 (84%)
 Frame = +2

Query: 194  SGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPN 373
            SG WFCEGAFNGNEK TMQ LNDRLA+YLEKVRQLE +N               P +CP+
Sbjct: 80   SGGWFCEGAFNGNEKATMQILNDRLANYLEKVRQLEQENTQLECRIREWYECQIPYICPD 139

Query: 374  YQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSL 553
            YQSYF+T EELQQKIL  KSEN RL++Q+DNAKLAADDFRTKYE E S RQLVE+DIN L
Sbjct: 140  YQSYFKTAEELQQKILLTKSENARLILQIDNAKLAADDFRTKYETELSLRQLVEADINGL 199

Query: 554  RRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLN 733
            RRILDELTLCKADLE QVESL+EELLCLK+NHEEEVN+LRSQLGDRLN+EVDAAP VDLN
Sbjct: 200  RRILDELTLCKADLEAQVESLKEELLCLKRNHEEEVNALRSQLGDRLNVEVDAAPPVDLN 259

Query: 734  SVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNAL 913
             +L++ R QYE LVE NRRDVE WF  QTEELN+QVVSSSEQLQ  Q EIIELRRTVN+L
Sbjct: 260  KILDDMRCQYETLVENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRTVNSL 319

Query: 914  EVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVL 1093
            E+ELQAQ ++R+SLE+TL ETEARYSSQL Q+Q LI NVE+QLAEIR DLERQN EYQVL
Sbjct: 320  EIELQAQQSMRNSLESTLAETEARYSSQLGQMQCLITNVESQLAEIRCDLERQNHEYQVL 379

Query: 1094 LDVRARLECEINTYRGLLESEDCKLPSNPCAT 1189
            LDV+ARLE EI TYR LL+ EDCKLP++PC+T
Sbjct: 380  LDVKARLESEIATYRRLLDGEDCKLPAHPCST 411


>ref|NP_001152846.2| keratin, type I cuticular Ha2 [Mus musculus].
          Length = 453

 Score =  479 bits (1232), Expect = e-135
 Identities = 243/338 (71%), Positives = 281/338 (83%)
 Frame = +2

Query: 176  IPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXX 355
            I +++ +   FCEGAFNGNEKETMQ LNDRLA+YLEKVRQLE +NA              
Sbjct: 82   ISSSMGTYGLFCEGAFNGNEKETMQVLNDRLANYLEKVRQLEKENAELEGKIQDVYQGQV 141

Query: 356  PLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVE 535
              +CP+YQSYF+TIEELQQK+L  K+EN R++V +DNAKLAADDFRTKYE E + RQLVE
Sbjct: 142  LTMCPDYQSYFQTIEELQQKVLCTKAENARMIVHIDNAKLAADDFRTKYETELALRQLVE 201

Query: 536  SDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAA 715
            +D N LRRILDELTL KADLE QVESL+EELLCLK+NHEEEV  LR QLGDRLNIEVDAA
Sbjct: 202  ADTNGLRRILDELTLNKADLEAQVESLKEELLCLKRNHEEEVGVLRQQLGDRLNIEVDAA 261

Query: 716  PTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELR 895
            P VDL  +L E R QYE +VETN RDVEEWF  Q EELNKQV +SSEQLQSYQ++II+LR
Sbjct: 262  PPVDLTRMLEEMRCQYETMVETNHRDVEEWFNMQMEELNKQVATSSEQLQSYQSDIIDLR 321

Query: 896  RTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQN 1075
            RTVN LE+ELQAQH+LRDSLENTL ETE R++SQL+Q+Q +I NVE+QL++IR DLERQN
Sbjct: 322  RTVNTLEIELQAQHSLRDSLENTLGETEGRFTSQLSQMQCMITNVESQLSDIRCDLERQN 381

Query: 1076 QEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCAT 1189
            QEY+VLLDV+ARLECEI+TYRGLLESED KLP NPC+T
Sbjct: 382  QEYKVLLDVKARLECEIDTYRGLLESEDSKLPCNPCST 419


>ref|NP_001034755.1| keratin, type I cytoskeletal 40 [Mus musculus].
          Length = 439

 Score =  449 bits (1156), Expect = e-126
 Identities = 237/375 (63%), Positives = 277/375 (73%), Gaps = 14/375 (3%)
 Frame = +2

Query: 158  LPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXX 337
            L G  N P  V S  W  EG+FN NEKETMQFLNDRLASYLE+VR LE +NA        
Sbjct: 64   LAGGCNSPCLVGSCAWCEEGSFNSNEKETMQFLNDRLASYLERVRSLEENNAELECRIRE 123

Query: 338  XXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERS 517
                  PLVCP+YQ YF TIEELQQKIL  K+EN+RL VQVDN KLAADDFR+KYE E S
Sbjct: 124  QCEPNAPLVCPDYQRYFDTIEELQQKILCTKAENSRLAVQVDNCKLAADDFRSKYESELS 183

Query: 518  SRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLN 697
             RQLVE+DI  LR IL ELTLCK+DLE  VES++++L+CLKK HEEEVN LR QLGDRL+
Sbjct: 184  LRQLVENDITGLRGILGELTLCKSDLEAHVESMKDDLICLKKGHEEEVNLLREQLGDRLS 243

Query: 698  IEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQA 877
            +E+D APTVDLN VL+E R QYE ++  NRRD EEWFA QTEELN+Q  SS+EQL+  Q 
Sbjct: 244  VELDTAPTVDLNKVLDEMRCQYERVLANNRRDAEEWFAAQTEELNQQQKSSAEQLEGCQT 303

Query: 878  EIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRA 1057
            E++EL+R  N LE+ELQAQ  L +SLE T+ ETEA+YS+QLAQ+Q LI +VE QLAEIR 
Sbjct: 304  EMLELKRKANTLEIELQAQQTLTESLECTVAETEAQYSTQLAQMQCLIDSVEHQLAEIRC 363

Query: 1058 DLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNP----------CATTNAS-- 1201
            DLERQNQEYQVLLD +ARLECEINTYRGLLE ED +LP NP          C   + S  
Sbjct: 364  DLERQNQEYQVLLDTKARLECEINTYRGLLEKEDSRLPCNPGSGAPMPNSTCEPCSNSMC 423

Query: 1202 --ANSYVSCSQKRCC 1240
               ++YV C+ + CC
Sbjct: 424  EPCSAYVICTVENCC 438


>ref|NP_998895.2| keratin, type I cytoskeletal 39 [Mus musculus].
          Length = 482

 Score =  419 bits (1078), Expect = e-117
 Identities = 213/327 (65%), Positives = 260/327 (79%)
 Frame = +2

Query: 209  CEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPNYQSYF 388
            C    N +EKETMQ LN+RLA+YLEKVR LE +NA              P++CP+Y SY+
Sbjct: 83   CTEGINTHEKETMQILNERLANYLEKVRMLEGENADLEDKIQEACSKALPILCPDYLSYY 142

Query: 389  RTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLRRILD 568
             TIEELQQKIL  K+EN+RLV Q+DN KLAADD R  YE E S RQLVE+D N L++ILD
Sbjct: 143  TTIEELQQKILCTKAENSRLVSQIDNTKLAADDLRANYEAELSLRQLVEADANGLKQILD 202

Query: 569  ELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLNE 748
             LTL KADLE +V+SL EELLCLK NHEEEVNSL+ QLGDR+NIEV AAP+VDLN +L E
Sbjct: 203  ALTLSKADLEARVQSLTEELLCLKTNHEEEVNSLQCQLGDRINIEVTAAPSVDLNQILQE 262

Query: 749  TRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQ 928
             R +YE+++ETNR+DVEEWF  Q EELN+QVVSSS+Q Q  Q +IIELRRT++ALE+ELQ
Sbjct: 263  MRCRYESIMETNRKDVEEWFNTQMEELNQQVVSSSQQQQCCQKDIIELRRTISALEIELQ 322

Query: 929  AQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLLDVRA 1108
            AQH +R+S E  LTETEARY++ LAQ+Q LI N+EAQ+A+IR+ L+RQ+QEY+VLLD+++
Sbjct: 323  AQHRMRESQECILTETEARYTALLAQIQSLIHNLEAQVADIRSALQRQSQEYEVLLDIKS 382

Query: 1109 RLECEINTYRGLLESEDCKLPSNPCAT 1189
            RLECEI TYR LLES D +LP NPCAT
Sbjct: 383  RLECEIATYRSLLESLDGRLPCNPCAT 409


>ref|NP_997648.2| keratin, type I cytoskeletal 42 [Mus musculus].
          Length = 452

 Score =  367 bits (943), Expect = e-102
 Identities = 188/319 (58%), Positives = 240/319 (75%)
 Frame = +2

Query: 212  EGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPNYQSYFR 391
            +    G+EKETMQ LNDRLA+YL++VR LE  NA              P    +Y  YF+
Sbjct: 87   DALLGGSEKETMQNLNDRLATYLDRVRALEEANADLEVKIREWYKKQGPGPARDYSPYFK 146

Query: 392  TIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLRRILDE 571
            TIE+L+ KIL+A  +N  +V+Q+DNA+LAADDFRTKYE E + R  VE+DIN LRR+LDE
Sbjct: 147  TIEDLRNKILAATIDNASIVLQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDE 206

Query: 572  LTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLNET 751
            LTL +ADLE Q+ESL+EEL  L+KNHEEE+N+LR Q+G  +N+E+DAAP VDL+ +LNE 
Sbjct: 207  LTLARADLEMQIESLKEELAYLRKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILNEM 266

Query: 752  RSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQA 931
            R QYE + E NR+D EEWF  +TEELN++V +++E LQS + EI ELRR+V  LE+ELQ+
Sbjct: 267  RDQYEKMAEKNRKDAEEWFFTKTEELNREVATNTEALQSSRTEITELRRSVQNLEIELQS 326

Query: 932  QHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLLDVRAR 1111
            Q +++ SLEN+L ETEARY +QLAQ+QGLI +VE QL E+R D+ERQN EYQVLLDV+ R
Sbjct: 327  QLSMKASLENSLAETEARYGAQLAQLQGLISSVEQQLCELRCDMERQNHEYQVLLDVKTR 386

Query: 1112 LECEINTYRGLLESEDCKL 1168
            LE EI TYR LLE ED  L
Sbjct: 387  LEQEIATYRRLLEGEDAHL 405


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,281,389
Number of extensions: 741875
Number of successful extensions: 4773
Number of sequences better than 1.0e-05: 99
Number of HSP's gapped: 4452
Number of HSP's successfully gapped: 103
Length of query: 466
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 361
Effective length of database: 12,463,779
Effective search space: 4499424219
Effective search space used: 4499424219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012159
         (1398 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003403930.1| PREDICTED: keratin, type I cuticular Ha4-lik...   602   e-172
Alignment   gi|NP_066293.2| keratin, type I cuticular Ha4 [Homo sapiens].        599   e-171
Alignment   gi|NP_004129.2| keratin, type I cuticular Ha3-I [Homo sapiens].      581   e-166
Alignment   gi|NP_002268.2| keratin, type I cuticular Ha1 [Homo sapiens].        578   e-165
Alignment   gi|NP_002270.1| keratin, type I cuticular Ha3-II [Homo sapiens].     575   e-164
Alignment   gi|NP_002271.3| keratin, type I cuticular Ha5 [Homo sapiens].        508   e-144
Alignment   gi|NP_003762.1| keratin, type I cuticular Ha6 [Homo sapiens].        503   e-142
Alignment   gi|NP_002269.3| keratin, type I cuticular Ha2 [Homo sapiens].        500   e-141
Alignment   gi|NP_872303.2| keratin, type I cytoskeletal 40 [Homo sapiens].      446   e-125
Alignment   gi|NP_006762.3| keratin, type I cuticular Ha8 [Homo sapiens].        426   e-119

>ref|XP_003403930.1| PREDICTED: keratin, type I cuticular Ha4-like [Homo sapiens].
          Length = 436

 Score =  602 bits (1551), Expect = e-172
 Identities = 312/410 (76%), Positives = 337/410 (82%), Gaps = 2/410 (0%)
 Frame = +2

Query: 17   HLHLHQFTCSSITSPSAMHYXXXXXXXXXXXXXXXXXXXXXXXQGITLPGARNIPATVSS 196
            H+HL Q TC SIT  S M Y                        G TLPGA NIPA VS+
Sbjct: 26   HIHLQQLTCFSITCSSTMSYSCCLPSLGCRTSCSSRPCVPPSCHGYTLPGACNIPANVSN 85

Query: 197  GNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPNY 376
             NWFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE DNA              PL+CP+Y
Sbjct: 86   CNWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERDNAELEKLIQERSQQQEPLLCPSY 145

Query: 377  QSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLR 556
            QSYF+TIEELQQKIL AK+EN RLVV +DNAKLA+DDFR+KY+ E+S R LVESDINS+R
Sbjct: 146  QSYFKTIEELQQKILCAKAENARLVVNIDNAKLASDDFRSKYQTEQSLRLLVESDINSIR 205

Query: 557  RILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNS 736
            RILDELTLCK+DLE+QVESLREEL+CLKKNHEEEVN+LRSQLGDRLN+EVD APTVDLN 
Sbjct: 206  RILDELTLCKSDLESQVESLREELICLKKNHEEEVNTLRSQLGDRLNVEVDTAPTVDLNQ 265

Query: 737  VLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALE 916
            VLNETRSQYEALVETNRR+VE+WFA QTEELNKQVVSSSEQLQS QAEIIELRRTVNALE
Sbjct: 266  VLNETRSQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQSCQAEIIELRRTVNALE 325

Query: 917  VELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLL 1096
            +ELQAQHNLRDSLENTLTE+EA YSSQL+QVQ LI NVE+QLAEIR DLERQNQEYQVLL
Sbjct: 326  IELQAQHNLRDSLENTLTESEAHYSSQLSQVQSLITNVESQLAEIRCDLERQNQEYQVLL 385

Query: 1097 DVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSC--SQKRCC 1240
            DVRARLECEINTYR LLESEDCKLP NPCATTNAS NS   C  SQK CC
Sbjct: 386  DVRARLECEINTYRSLLESEDCKLPCNPCATTNASGNSCGPCGTSQKGCC 435


>ref|NP_066293.2| keratin, type I cuticular Ha4 [Homo sapiens].
          Length = 436

 Score =  599 bits (1545), Expect = e-171
 Identities = 311/410 (75%), Positives = 336/410 (81%), Gaps = 2/410 (0%)
 Frame = +2

Query: 17   HLHLHQFTCSSITSPSAMHYXXXXXXXXXXXXXXXXXXXXXXXQGITLPGARNIPATVSS 196
            H+HL Q TC SIT  S M Y                        G TLPGA NIPA VS+
Sbjct: 26   HIHLQQLTCFSITCSSTMSYSCCLPSLGCRTSCSSRPCVPPSCHGYTLPGACNIPANVSN 85

Query: 197  GNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVCPNY 376
             NWFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE DNA              PL+CP+Y
Sbjct: 86   CNWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERDNAELEKLIQERSQQQEPLLCPSY 145

Query: 377  QSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLR 556
            QSYF+TIEELQQKIL AK+EN RLVV +DNAKLA+DDFR+KY+ E+S R LVESDINS+R
Sbjct: 146  QSYFKTIEELQQKILCAKAENARLVVNIDNAKLASDDFRSKYQTEQSLRLLVESDINSIR 205

Query: 557  RILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNS 736
            RILDELTLCK+DLE+QVESLREEL+CLKKNHEEEVN+LRSQLGDRLN+EVD APTVDLN 
Sbjct: 206  RILDELTLCKSDLESQVESLREELICLKKNHEEEVNTLRSQLGDRLNVEVDTAPTVDLNQ 265

Query: 737  VLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALE 916
            VLNETRSQYEALVE NRR+VE+WFA QTEELNKQVVSSSEQLQS QAEIIELRRTVNALE
Sbjct: 266  VLNETRSQYEALVEINRREVEQWFATQTEELNKQVVSSSEQLQSCQAEIIELRRTVNALE 325

Query: 917  VELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLL 1096
            +ELQAQHNLRDSLENTLTE+EA YSSQL+QVQ LI NVE+QLAEIR DLERQNQEYQVLL
Sbjct: 326  IELQAQHNLRDSLENTLTESEAHYSSQLSQVQSLITNVESQLAEIRCDLERQNQEYQVLL 385

Query: 1097 DVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSC--SQKRCC 1240
            DVRARLECEINTYR LLESEDCKLP NPCATTNAS NS   C  SQK CC
Sbjct: 386  DVRARLECEINTYRSLLESEDCKLPCNPCATTNASGNSCGPCGTSQKGCC 435


>ref|NP_004129.2| keratin, type I cuticular Ha3-I [Homo sapiens].
          Length = 404

 Score =  581 bits (1498), Expect = e-166
 Identities = 298/363 (82%), Positives = 320/363 (88%)
 Frame = +2

Query: 149  GITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXX 328
            G TLPGA NIPA VS+ NWFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE DNA     
Sbjct: 28   GCTLPGACNIPANVSNCNWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERDNAELENL 87

Query: 329  XXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEV 508
                     PLVC +YQSYF+TIEELQQKIL +KSEN RLVVQ+DNAKLA+DDFRTKYE 
Sbjct: 88   IRERSQQQEPLVCASYQSYFKTIEELQQKILCSKSENARLVVQIDNAKLASDDFRTKYET 147

Query: 509  ERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGD 688
            E S RQLVESDIN LRRILDELTLC++DLE QVESL+EELLCLK+NHE+EVN+LR QLGD
Sbjct: 148  ELSLRQLVESDINGLRRILDELTLCRSDLEAQVESLKEELLCLKQNHEQEVNTLRCQLGD 207

Query: 689  RLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQS 868
            RLN+EVDAAPTVDLN VLNETRSQYEALVETNRR+VE+WFA QTEELNKQVVSSSEQLQS
Sbjct: 208  RLNVEVDAAPTVDLNQVLNETRSQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQS 267

Query: 869  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAE 1048
            YQAEIIELRRTVNALE+ELQAQHNLRDSLENTLTE+EARYSSQL+QVQ LI NVE+QLAE
Sbjct: 268  YQAEIIELRRTVNALEIELQAQHNLRDSLENTLTESEARYSSQLSQVQRLITNVESQLAE 327

Query: 1049 IRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQ 1228
            IR+DLERQNQEYQVLLDVRARLECEINTYR LLESEDCKLPSNPCATTNA   S   C  
Sbjct: 328  IRSDLERQNQEYQVLLDVRARLECEINTYRSLLESEDCKLPSNPCATTNACDKSTGPCIS 387

Query: 1229 KRC 1237
              C
Sbjct: 388  NPC 390


>ref|NP_002268.2| keratin, type I cuticular Ha1 [Homo sapiens].
          Length = 416

 Score =  578 bits (1490), Expect = e-165
 Identities = 295/361 (81%), Positives = 316/361 (87%)
 Frame = +2

Query: 155  TLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXX 334
            TLPGA NIPA VS+ NWFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE DNA       
Sbjct: 30   TLPGACNIPANVSNCNWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERDNAELENLIR 89

Query: 335  XXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVER 514
                   PL+CP+YQSYF+TIEELQQKIL  KSEN RLVVQ+DNAKLAADDFRTKY+ E 
Sbjct: 90   ERSQQQEPLLCPSYQSYFKTIEELQQKILCTKSENARLVVQIDNAKLAADDFRTKYQTEL 149

Query: 515  SSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRL 694
            S RQLVESDIN LRRILDELTLCK+DLE QVESL+EELLCLK NHE+EVN+LR QLGDRL
Sbjct: 150  SLRQLVESDINGLRRILDELTLCKSDLEAQVESLKEELLCLKSNHEQEVNTLRCQLGDRL 209

Query: 695  NIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQ 874
            N+EVDAAPTVDLN VLNETRSQYEALVETNRR+VE+WF  QTEELNKQVVSSSEQLQSYQ
Sbjct: 210  NVEVDAAPTVDLNRVLNETRSQYEALVETNRREVEQWFTTQTEELNKQVVSSSEQLQSYQ 269

Query: 875  AEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIR 1054
            AEIIELRRTVNALE+ELQAQHNLRDSLENTLTE+EARYSSQL+QVQ LI NVE+QLAEIR
Sbjct: 270  AEIIELRRTVNALEIELQAQHNLRDSLENTLTESEARYSSQLSQVQSLITNVESQLAEIR 329

Query: 1055 ADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKR 1234
            +DLERQNQEYQVLLDVRARLECEINTYR LLESEDC LPSNPCATTNA +     C    
Sbjct: 330  SDLERQNQEYQVLLDVRARLECEINTYRSLLESEDCNLPSNPCATTNACSKPIGPCLSNP 389

Query: 1235 C 1237
            C
Sbjct: 390  C 390


>ref|NP_002270.1| keratin, type I cuticular Ha3-II [Homo sapiens].
          Length = 404

 Score =  575 bits (1483), Expect = e-164
 Identities = 294/363 (80%), Positives = 320/363 (88%)
 Frame = +2

Query: 149  GITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXX 328
            G TLPGA NIPA VS+ NWFCEG+FNG+EKETMQFLNDRLASYLEKVRQLE DNA     
Sbjct: 28   GYTLPGACNIPANVSNCNWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERDNAELENL 87

Query: 329  XXXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEV 508
                     PL+CP+YQSYF+TIEELQQKIL +KSEN RLVVQ+DNAKLAADDFRTKY+ 
Sbjct: 88   IRERSQQQEPLLCPSYQSYFKTIEELQQKILCSKSENARLVVQIDNAKLAADDFRTKYQT 147

Query: 509  ERSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGD 688
            E+S RQLVESDINSLRRILDELTLC++DLE Q+ESL+EELL LK+NHE+EVN+LR QLGD
Sbjct: 148  EQSLRQLVESDINSLRRILDELTLCRSDLEAQMESLKEELLSLKQNHEQEVNTLRCQLGD 207

Query: 689  RLNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQS 868
            RLN+EVDAAP VDLN VLNETR+QYEALVETNRR+VE+WFA QTEELNKQVVSSSEQLQS
Sbjct: 208  RLNVEVDAAPAVDLNQVLNETRNQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQS 267

Query: 869  YQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAE 1048
            YQAEIIELRRTVNALE+ELQAQHNLR SLENTLTE+EARYSSQL+QVQ LI NVE+QLAE
Sbjct: 268  YQAEIIELRRTVNALEIELQAQHNLRYSLENTLTESEARYSSQLSQVQSLITNVESQLAE 327

Query: 1049 IRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQ 1228
            IR+DLERQNQEYQVLLDVRARLECEINTYR LLESEDCKLPSNPCATTNA      SC  
Sbjct: 328  IRSDLERQNQEYQVLLDVRARLECEINTYRSLLESEDCKLPSNPCATTNACEKPIGSCVT 387

Query: 1229 KRC 1237
              C
Sbjct: 388  NPC 390


>ref|NP_002271.3| keratin, type I cuticular Ha5 [Homo sapiens].
          Length = 455

 Score =  508 bits (1307), Expect = e-144
 Identities = 264/363 (72%), Positives = 291/363 (80%)
 Frame = +2

Query: 152  ITLPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXX 331
            + LP      +    G WF EG   GNEKETMQ LNDRLA YLEKVRQLE +NA      
Sbjct: 70   LCLPAGGFATSYSGGGGWFGEGILTGNEKETMQSLNDRLAGYLEKVRQLEQENASLESRI 129

Query: 332  XXXXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVE 511
                    P +CP+YQSYFRTIEELQ+K L +K+EN RLVV++DNAKLAADDFRTKYE E
Sbjct: 130  REWCEQQVPYMCPDYQSYFRTIEELQKKTLCSKAENARLVVEIDNAKLAADDFRTKYETE 189

Query: 512  RSSRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDR 691
             S RQLVESDIN LRRILD+LTLCK+DLE QVESL+EELLCLKKNHEEEVNSLR QLGDR
Sbjct: 190  VSLRQLVESDINGLRRILDDLTLCKSDLEAQVESLKEELLCLKKNHEEEVNSLRCQLGDR 249

Query: 692  LNIEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSY 871
            LN+EVDAAP VDLN VL E R QYE LVE NRRD E+W   Q+EELN+QVVSSSEQLQS 
Sbjct: 250  LNVEVDAAPPVDLNRVLEEMRCQYETLVENNRRDAEDWLDTQSEELNQQVVSSSEQLQSC 309

Query: 872  QAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEI 1051
            QAEIIELRRTVNALE+ELQAQH++RD+LE+TL ETEARYSSQLAQ+Q +I NVEAQLAEI
Sbjct: 310  QAEIIELRRTVNALEIELQAQHSMRDALESTLAETEARYSSQLAQMQCMITNVEAQLAEI 369

Query: 1052 RADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQK 1231
            RADLERQNQEYQVLLDVRARLECEINTYRGLLESED KLP NPCA   + + S + C   
Sbjct: 370  RADLERQNQEYQVLLDVRARLECEINTYRGLLESEDSKLPCNPCAPDYSPSKSCLPCLPA 429

Query: 1232 RCC 1240
              C
Sbjct: 430  ASC 432


>ref|NP_003762.1| keratin, type I cuticular Ha6 [Homo sapiens].
          Length = 467

 Score =  503 bits (1296), Expect = e-142
 Identities = 257/334 (76%), Positives = 283/334 (84%)
 Frame = +2

Query: 188  VSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXXXXXPLVC 367
            V SG WFCEG+FNG+EKETMQFLNDRLA+YLEKVRQLE +NA              P +C
Sbjct: 78   VGSGGWFCEGSFNGSEKETMQFLNDRLANYLEKVRQLERENAELESRIQEWYEFQIPYIC 137

Query: 368  PNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDIN 547
            P+YQSYF+TIE+ QQKIL  KSEN RLV+Q+DNAKLAADDFRTKYE E S RQLVE+DIN
Sbjct: 138  PDYQSYFKTIEDFQQKILLTKSENARLVLQIDNAKLAADDFRTKYETELSLRQLVEADIN 197

Query: 548  SLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVD 727
             LRRILDELTLCKADLE QVESL+EEL+CLKKNHEEEV+ LR QLGDRLN+EVDAAP VD
Sbjct: 198  GLRRILDELTLCKADLEAQVESLKEELMCLKKNHEEEVSVLRCQLGDRLNVEVDAAPPVD 257

Query: 728  LNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVN 907
            LN +L + R QYEALVE NRRDVE WF  QTEELN+QVVSSSEQLQ  Q EIIELRRTVN
Sbjct: 258  LNKILEDMRCQYEALVENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRTVN 317

Query: 908  ALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQ 1087
            ALE+ELQAQH++R+SLE+TL ETEARYSSQLAQ+Q LI NVEAQL+EIR DLERQNQEYQ
Sbjct: 318  ALEIELQAQHSMRNSLESTLAETEARYSSQLAQMQCLISNVEAQLSEIRCDLERQNQEYQ 377

Query: 1088 VLLDVRARLECEINTYRGLLESEDCKLPSNPCAT 1189
            VLLDV+ARLE EI TYR LLE EDCKLP  PCAT
Sbjct: 378  VLLDVKARLEGEIATYRHLLEGEDCKLPPQPCAT 411


>ref|NP_002269.3| keratin, type I cuticular Ha2 [Homo sapiens].
          Length = 448

 Score =  500 bits (1287), Expect = e-141
 Identities = 257/358 (71%), Positives = 291/358 (81%)
 Frame = +2

Query: 167  ARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXXX 346
            A  I  ++  G+W+ EGAFNGNEKETMQFLNDRLASYL +VRQLE +NA           
Sbjct: 74   ASGISGSMGPGSWYSEGAFNGNEKETMQFLNDRLASYLTRVRQLEQENAELESRIQEASH 133

Query: 347  XXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQ 526
                 + P+YQS+FRTIEELQQKIL  K+EN R+VV +DNAKLAADDFR KYE E + RQ
Sbjct: 134  SQVLTMTPDYQSHFRTIEELQQKILCTKAENARMVVNIDNAKLAADDFRAKYEAELAMRQ 193

Query: 527  LVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEV 706
            LVE+DIN LRRILD+LTLCKADLE QVESL+EEL+CLKKNHEEEV SLR QLGDRLNIEV
Sbjct: 194  LVEADINGLRRILDDLTLCKADLEAQVESLKEELMCLKKNHEEEVGSLRCQLGDRLNIEV 253

Query: 707  DAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEII 886
            DAAP VDL  VL E R QYEA+VE NRRDVEEWF  Q EELN+QV +SSEQLQ+YQ++II
Sbjct: 254  DAAPPVDLTRVLEEMRCQYEAMVEANRRDVEEWFNMQMEELNQQVATSSEQLQNYQSDII 313

Query: 887  ELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLE 1066
            +LRRTVN LE+ELQAQH+LRDSLENTLTE+EARYSSQLAQ+Q +I NVEAQLAEIRADLE
Sbjct: 314  DLRRTVNTLEIELQAQHSLRDSLENTLTESEARYSSQLAQMQCMITNVEAQLAEIRADLE 373

Query: 1067 RQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRCC 1240
            RQNQEYQVLLDVRARLE EINTYR LLE+EDCKLP NPC+T + +      C  +  C
Sbjct: 374  RQNQEYQVLLDVRARLEGEINTYRSLLENEDCKLPCNPCSTPSCTTCVPSPCVPRTVC 431


>ref|NP_872303.2| keratin, type I cytoskeletal 40 [Homo sapiens].
          Length = 431

 Score =  446 bits (1148), Expect = e-125
 Identities = 232/365 (63%), Positives = 280/365 (76%), Gaps = 6/365 (1%)
 Frame = +2

Query: 164  GARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXXXX 343
            G+ N P  V +  W  +G F  NEKETMQFLNDRLASYLEKVR LE  NA          
Sbjct: 66   GSCNSPCLVGNCAWCEDGVFTSNEKETMQFLNDRLASYLEKVRSLEETNAELESRIQEQC 125

Query: 344  XXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSR 523
                P+VCP+YQ YF TIE+LQQKIL  K+EN+RL VQ+DN KLA DDF++KYE E S R
Sbjct: 126  EQDIPMVCPDYQRYFNTIEDLQQKILCTKAENSRLAVQLDNCKLATDDFKSKYESELSLR 185

Query: 524  QLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIE 703
            QL+E+DI+SL  IL+ELTLCK+DLE  VESL+E+LLCLKKNHEEEVN LR QLGDRL++E
Sbjct: 186  QLLEADISSLHGILEELTLCKSDLEAHVESLKEDLLCLKKNHEEEVNLLREQLGDRLSVE 245

Query: 704  VDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEI 883
            +D APT+DLN VL+E R Q E ++  NRR+ EEW A QTEELN+Q +SS+EQLQ  Q EI
Sbjct: 246  LDTAPTLDLNRVLDEMRCQCETVLANNRREAEEWLAVQTEELNQQQLSSAEQLQGCQMEI 305

Query: 884  IELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADL 1063
            +EL+RT +ALE+ELQAQ +L +SLE T+ ETEA+YSSQLAQ+Q LI N+E QLAEIR DL
Sbjct: 306  LELKRTASALEIELQAQQSLTESLECTVAETEAQYSSQLAQIQCLIDNLENQLAEIRCDL 365

Query: 1064 ERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASAN------SYVSCS 1225
            ERQNQEYQVLLDV+ARLE EINTY GLL+SED +L  +PC+TT  S+N      +YV C+
Sbjct: 366  ERQNQEYQVLLDVKARLEGEINTYWGLLDSEDSRLSCSPCSTTCTSSNTCEPCSAYVICT 425

Query: 1226 QKRCC 1240
             + CC
Sbjct: 426  VENCC 430


>ref|NP_006762.3| keratin, type I cuticular Ha8 [Homo sapiens].
          Length = 456

 Score =  426 bits (1096), Expect = e-119
 Identities = 222/361 (61%), Positives = 271/361 (75%)
 Frame = +2

Query: 158  LPGARNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLEWDNAXXXXXXXX 337
            LPG  +IP  +     + E   NG+EKETMQFLNDRLA+YLEKVRQLE +NA        
Sbjct: 79   LPGTCHIPGNIGICGAYGENTLNGHEKETMQFLNDRLANYLEKVRQLEQENAELEATLLE 138

Query: 338  XXXXXXPLVCPNYQSYFRTIEELQQKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERS 517
                    VCP+YQSYF TIEELQQKIL +K+EN RL+VQ+DNAKLAADDFR K E ERS
Sbjct: 139  RSKCHESTVCPDYQSYFHTIEELQQKILCSKAENARLIVQIDNAKLAADDFRIKLESERS 198

Query: 518  SRQLVESDINSLRRILDELTLCKADLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLN 697
             RQLVE+D    +++LD+ TL KADLE Q ESL+EE L LK NHE+EV  LRSQLG++L 
Sbjct: 199  LRQLVEADKCGTQKLLDDATLAKADLEAQQESLKEEQLSLKSNHEQEVKILRSQLGEKLR 258

Query: 698  IEVDAAPTVDLNSVLNETRSQYEALVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQA 877
            IE+D  PT+DLN VL E R+QYEA++ETNR+DVE+WF  Q+E ++ Q +S SE+LQ  Q+
Sbjct: 259  IELDIEPTIDLNRVLGEMRAQYEAMLETNRQDVEQWFQAQSEGISLQDMSCSEELQCCQS 318

Query: 878  EIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRA 1057
            EI+ELR TVNALEVE QAQH L+D L+N+L E E R+ ++LAQ+Q LI NVE QL+EIRA
Sbjct: 319  EILELRCTVNALEVERQAQHTLKDCLQNSLCEAEDRFGTELAQMQSLISNVEEQLSEIRA 378

Query: 1058 DLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPSNPCATTNASANSYVSCSQKRC 1237
            DLERQNQEYQVLLDV+ RLE EI TYR LLESEDCKLP NPC+T+ +   +   C+ +  
Sbjct: 379  DLERQNQEYQVLLDVKTRLENEIATYRNLLESEDCKLPCNPCSTSPSCVTA--PCAPRPS 436

Query: 1238 C 1240
            C
Sbjct: 437  C 437


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,479,548
Number of extensions: 892177
Number of successful extensions: 5753
Number of sequences better than 1.0e-05: 100
Number of HSP's gapped: 5449
Number of HSP's successfully gapped: 106
Length of query: 466
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 360
Effective length of database: 14,802,980
Effective search space: 5329072800
Effective search space used: 5329072800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012159
         (1398 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                         791   0.0  

>Sscrofa_Chr12 
||          Length = 63588571

 Score =  791 bits (399), Expect = 0.0
 Identities = 412/415 (99%), Gaps = 1/415 (0%)
 Strand = Plus / Minus

                                                                            
Query: 2        aaaccttacc-acctccacctccacctccatcagttcacctgctcttccatcacctctcc 60
                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21396567 aaaccttacccacctccacctccacctccatcagttcacctgctcttccatcacctctcc 21396508

                                                                            
Query: 61       cagcgccatgcattacagccgctgcctgcccaacctgagctgccgctctagctgctcctc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21396507 cagcgccatgcattacagccgctgcctgcccaacctgagctgccgctctagctgctcctc 21396448

                                                                            
Query: 121      caggccctgtgtgccctccagctgccagggtatcaccctacccggggcccgcaacatccc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21396447 caggccctgtgtgccctccagctgccagggtatcaccctacccggggcccgcaacatccc 21396388

                                                                            
Query: 181      cgccactgtgagcagcggcaactggttctgcgagggcgccttcaatggcaacgagaagga 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21396387 cgccactgtgagcagcggcaactggttctgcgagggcgccttcaatggcaacgagaagga 21396328

                                                                            
Query: 241      gaccatgcagtttctgaacgaccggctggccagctacctggagaaggtgcgccagctgga 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21396327 gaccatgcagtttctgaacgaccggctggccagctacctggagaaggtgcgccagctgga 21396268

                                                                            
Query: 301      gtgggacaacgcagagctggagaggcagatccaggagcggtctcagcagcaggagcccct 360
                | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21396267 gcgggacaacgcagagctggagaggcagatccaggagcggtctcagcagcaggagcccct 21396208

                                                                       
Query: 361      ggtgtgtcccaactaccagtcctacttccggaccattgaggagctccagcagaag 415
                |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 21396207 ggtgtgtcccaactaccagtcctacttccggaccatcgaggagctccagcagaag 21396153



 Score =  605 bits (305), Expect = e-170
 Identities = 338/349 (96%)
 Strand = Plus / Minus

                                                                            
Query: 67       catgcattacagccgctgcctgcccaacctgagctgccgctctagctgctcctccaggcc 126
                ||||| |||||||  ||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 21408840 catgccttacagcttctgcctgcccaacctgagctgccgctccagctcctcctccaggcc 21408781

                                                                            
Query: 127      ctgtgtgccctccagctgccagggtatcaccctacccggggcccgcaacatccccgccac 186
                ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 21408780 ctgcgtgccctccagctgccagggtatcaccctacccggagcctgcaacatccccgccac 21408721

                                                                            
Query: 187      tgtgagcagcggcaactggttctgcgagggcgccttcaatggcaacgagaaggagaccat 246
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408720 tgtgagcagcggcaactggttctgcgagggcgccttcaatggcaacgagaaggagaccat 21408661

                                                                            
Query: 247      gcagtttctgaacgaccggctggccagctacctggagaaggtgcgccagctggagtggga 306
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21408660 gcagtttctgaacgaccggctggccagctacctggagaaggtgcgccagctggagcggga 21408601

                                                                            
Query: 307      caacgcagagctggagaggcagatccaggagcggtctcagcagcaggagcccctggtgtg 366
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408600 caacgcggagctggagaggcagatccaggagcggtctcagcagcaggagcccctggtgtg 21408541

                                                                 
Query: 367      tcccaactaccagtcctacttccggaccattgaggagctccagcagaag 415
                |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 21408540 tcccaactaccagtcctacttccggaccatcgaggagctccagcagaag 21408492



 Score =  591 bits (298), Expect = e-166
 Identities = 325/334 (97%)
 Strand = Plus / Minus

                                                                            
Query: 82       ctgcctgcccaacctgagctgccgctctagctgctcctccaggccctgtgtgccctccag 141
                ||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||
Sbjct: 21368163 ctgcctgcccaacctgagctgccgctccagctcctcctctaggccctgcgtgccctccag 21368104

                                                                            
Query: 142      ctgccagggtatcaccctacccggggcccgcaacatccccgccactgtgagcagcggcaa 201
                |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 21368103 ctgccagggtatcaccctacccggagcctgcaacatccctgccactgtgagcagcggcaa 21368044

                                                                            
Query: 202      ctggttctgcgagggcgccttcaatggcaacgagaaggagaccatgcagtttctgaacga 261
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21368043 ctggttctgcgagggcgccttcaatggcaacgagaaggagaccatgcagtttctgaacga 21367984

                                                                            
Query: 262      ccggctggccagctacctggagaaggtgcgccagctggagtgggacaacgcagagctgga 321
                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 21367983 ccggctggccagctacctggagaaggtgcgccagctggagcgggacaacgcagagctgga 21367924

                                                                            
Query: 322      gaggcagatccaggagcggtctcagcagcaggagcccctggtgtgtcccaactaccagtc 381
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21367923 gaggcagatccaggagcggtctcagcagcaggagcccctggtgtgtcccaactaccagtc 21367864

                                                  
Query: 382      ctacttccggaccattgaggagctccagcagaag 415
                ||||||||||||||| ||||||||||||||||||
Sbjct: 21367863 ctacttccggaccatcgaggagctccagcagaag 21367830



 Score =  583 bits (294), Expect = e-163
 Identities = 324/334 (97%)
 Strand = Plus / Minus

                                                                            
Query: 82       ctgcctgcccaacctgagctgccgctctagctgctcctccaggccctgtgtgccctccag 141
                ||||||||||||||||||||||||||| ||||  |||||||||||||| |||||||||||
Sbjct: 21383319 ctgcctgcccaacctgagctgccgctccagctcttcctccaggccctgcgtgccctccag 21383260

                                                                            
Query: 142      ctgccagggtatcaccctacccggggcccgcaacatccccgccactgtgagcagcggcaa 201
                |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 21383259 ctgccagggtatcaccctacccggagcctgcaacatccctgccactgtgagcagcggcaa 21383200

                                                                            
Query: 202      ctggttctgcgagggcgccttcaatggcaacgagaaggagaccatgcagtttctgaacga 261
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21383199 ctggttctgcgagggcgccttcaatggcaacgagaaggagaccatgcagtttctgaacga 21383140

                                                                            
Query: 262      ccggctggccagctacctggagaaggtgcgccagctggagtgggacaacgcagagctgga 321
                |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 21383139 ccggctggccagctacctggagaaggtgcgccagctggagcgggacaacgcggagctgga 21383080

                                                                            
Query: 322      gaggcagatccaggagcggtctcagcagcaggagcccctggtgtgtcccaactaccagtc 381
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21383079 gaggcagatccaggagcggtctcagcagcaggagcccctggtgtgtcccaactaccagtc 21383020

                                                  
Query: 382      ctacttccggaccattgaggagctccagcagaag 415
                ||||||||||||||| ||||||||||||||||||
Sbjct: 21383019 ctacttccggaccatcgaggagctccagcagaag 21382986



 Score =  442 bits (223), Expect = e-121
 Identities = 223/223 (100%)
 Strand = Plus / Minus

                                                                            
Query: 943      gagggactctctggagaacacgctgacggagacggaggcccgctacagctcgcagctggc 1002
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21364283 gagggactctctggagaacacgctgacggagacggaggcccgctacagctcgcagctggc 21364224

                                                                            
Query: 1003     ccaggtgcagggcctgatcggcaacgtggaggctcagctggcggagatccgggctgacct 1062
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21364223 ccaggtgcagggcctgatcggcaacgtggaggctcagctggcggagatccgggctgacct 21364164

                                                                            
Query: 1063     ggagcgtcagaaccaggagtaccaggtgctgctggacgtgcgggcccggctggagtgtga 1122
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21364163 ggagcgtcagaaccaggagtaccaggtgctgctggacgtgcgggcccggctggagtgtga 21364104

                                                           
Query: 1123     gatcaacacgtaccgggggctgctggagagcgaggactgcaag 1165
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21364103 gatcaacacgtaccgggggctgctggagagcgaggactgcaag 21364061



 Score =  442 bits (223), Expect = e-121
 Identities = 223/223 (100%)
 Strand = Plus / Minus

                                                                            
Query: 943      gagggactctctggagaacacgctgacggagacggaggcccgctacagctcgcagctggc 1002
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21377700 gagggactctctggagaacacgctgacggagacggaggcccgctacagctcgcagctggc 21377641

                                                                            
Query: 1003     ccaggtgcagggcctgatcggcaacgtggaggctcagctggcggagatccgggctgacct 1062
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21377640 ccaggtgcagggcctgatcggcaacgtggaggctcagctggcggagatccgggctgacct 21377581

                                                                            
Query: 1063     ggagcgtcagaaccaggagtaccaggtgctgctggacgtgcgggcccggctggagtgtga 1122
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21377580 ggagcgtcagaaccaggagtaccaggtgctgctggacgtgcgggcccggctggagtgtga 21377521

                                                           
Query: 1123     gatcaacacgtaccgggggctgctggagagcgaggactgcaag 1165
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21377520 gatcaacacgtaccgggggctgctggagagcgaggactgcaag 21377478



 Score =  442 bits (223), Expect = e-121
 Identities = 223/223 (100%)
 Strand = Plus / Minus

                                                                            
Query: 943      gagggactctctggagaacacgctgacggagacggaggcccgctacagctcgcagctggc 1002
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21392874 gagggactctctggagaacacgctgacggagacggaggcccgctacagctcgcagctggc 21392815

                                                                            
Query: 1003     ccaggtgcagggcctgatcggcaacgtggaggctcagctggcggagatccgggctgacct 1062
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21392814 ccaggtgcagggcctgatcggcaacgtggaggctcagctggcggagatccgggctgacct 21392755

                                                                            
Query: 1063     ggagcgtcagaaccaggagtaccaggtgctgctggacgtgcgggcccggctggagtgtga 1122
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21392754 ggagcgtcagaaccaggagtaccaggtgctgctggacgtgcgggcccggctggagtgtga 21392695

                                                           
Query: 1123     gatcaacacgtaccgggggctgctggagagcgaggactgcaag 1165
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21392694 gatcaacacgtaccgggggctgctggagagcgaggactgcaag 21392652



 Score =  442 bits (223), Expect = e-121
 Identities = 223/223 (100%)
 Strand = Plus / Minus

                                                                            
Query: 943      gagggactctctggagaacacgctgacggagacggaggcccgctacagctcgcagctggc 1002
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21406142 gagggactctctggagaacacgctgacggagacggaggcccgctacagctcgcagctggc 21406083

                                                                            
Query: 1003     ccaggtgcagggcctgatcggcaacgtggaggctcagctggcggagatccgggctgacct 1062
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21406082 ccaggtgcagggcctgatcggcaacgtggaggctcagctggcggagatccgggctgacct 21406023

                                                                            
Query: 1063     ggagcgtcagaaccaggagtaccaggtgctgctggacgtgcgggcccggctggagtgtga 1122
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21406022 ggagcgtcagaaccaggagtaccaggtgctgctggacgtgcgggcccggctggagtgtga 21405963

                                                           
Query: 1123     gatcaacacgtaccgggggctgctggagagcgaggactgcaag 1165
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21405962 gatcaacacgtaccgggggctgctggagagcgaggactgcaag 21405920



 Score =  434 bits (219), Expect = e-119
 Identities = 222/223 (99%)
 Strand = Plus / Minus

                                                                            
Query: 943      gagggactctctggagaacacgctgacggagacggaggcccgctacagctcgcagctggc 1002
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21436262 gagggactctctggagaacacgctgacggagacggaggcccgctacagctcgcagctggc 21436203

                                                                            
Query: 1003     ccaggtgcagggcctgatcggcaacgtggaggctcagctggcggagatccgggctgacct 1062
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21436202 ccaggtgcagggcctgatcggcaacgtggaggctcagctggcggagatccgggctgacct 21436143

                                                                            
Query: 1063     ggagcgtcagaaccaggagtaccaggtgctgctggacgtgcgggcccggctggagtgtga 1122
                |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 21436142 ggagcgtcagaaccaggagtaccaggtgctgctggatgtgcgggcccggctggagtgtga 21436083

                                                           
Query: 1123     gatcaacacgtaccgggggctgctggagagcgaggactgcaag 1165
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21436082 gatcaacacgtaccgggggctgctggagagcgaggactgcaag 21436040



 Score =  406 bits (205), Expect = e-110
 Identities = 229/235 (97%), Gaps = 2/235 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1165     gcttcccagcaacccctgcgccaccaccaatgctagtgccaactcctatgtgtcctgctc 1224
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21392184 gcttcccagcaacccctgcgccaccaccaatgctagtgccaactcctatgtgtcctgctc 21392125

                                                                            
Query: 1225     tcaaaagcgttgctgttaatcattaaactggcatcctctttgaagacgaccacnacgcct 1284
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 21392124 tcaaaagcgttgctgttaatcattaaactggcatcctctttgaagacgaccacaacgcct 21392065

                                                                            
Query: 1285     agatc-agcacagggcaggtccccaggtcctgccntttgctggagctccattaccgttna 1343
                ||||| ||||||||  |||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 21392064 agatcaagcacaggcaaggtccccaggtcctgcc-tttgctggagctccattaccgttta 21392006

                                                                       
Query: 1344     taaacctcgtctagccagctgtgctatttctacgcatggacatgctctccagacc 1398
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21392005 taaacctcgtctagccagctgtgctatttctacgcatggacatgctctccagacc 21391951



 Score =  359 bits (181), Expect = 3e-96
 Identities = 193/197 (97%)
 Strand = Plus / Minus

                                                                            
Query: 969      cggagacggaggcccgctacagctcgcagctggcccaggtgcagggcctgatcggcaacg 1028
                |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct: 21448695 cggagacggaggcccgctacagctcgcagctggcccagatgcaaggcctgattggcaacg 21448636

                                                                            
Query: 1029     tggaggctcagctggcggagatccgggctgacctggagcgtcagaaccaggagtaccagg 1088
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21448635 tggaggctcagctggcggagatccgggctgacctggagcgtcagaaccaggagtaccagg 21448576

                                                                            
Query: 1089     tgctgctggacgtgcgggcccggctggagtgtgagatcaacacgtaccgggggctgctgg 1148
                ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 21448575 tgctgctggacgtgcgggcccggctggagagtgagatcaacacgtaccgggggctgctgg 21448516

                                 
Query: 1149     agagcgaggactgcaag 1165
                |||||||||||||||||
Sbjct: 21448515 agagcgaggactgcaag 21448499



 Score =  317 bits (160), Expect = 9e-84
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                            
Query: 654      aggaagtcaactccctgcggagccagctcggggaccgcctcaacatcgaggtggacgccg 713
                |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21364842 aggaagtcaactccctccggagccagctcggggaccgcctcaacatcgaggtggacgccg 21364783

                                                                            
Query: 714      ctcccaccgtcgacctgaacagcgtgctcaacgagaccaggagccagtacgaggccctgg 773
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21364782 ctcccaccgtcgacctgaacagcgtgctcaacgagaccaggagccagtacgaggccctgg 21364723

                                                            
Query: 774      tggagaccaaccgcagggacgtggaggaatggttcgccaggcag 817
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21364722 tggagaccaaccgcagggacgtggaggaatggttcgccaggcag 21364679



 Score =  317 bits (160), Expect = 9e-84
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                            
Query: 654      aggaagtcaactccctgcggagccagctcggggaccgcctcaacatcgaggtggacgccg 713
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21393432 aggaagtcaactccctgcggagccagctcggggaccgcctcaacatcgaggtggacgccg 21393373

                                                                            
Query: 714      ctcccaccgtcgacctgaacagcgtgctcaacgagaccaggagccagtacgaggccctgg 773
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 21393372 ctcccaccgtcgacctgaacagcgtgctcaacgagaccaggagccagtacgaggccctcg 21393313

                                                            
Query: 774      tggagaccaaccgcagggacgtggaggaatggttcgccaggcag 817
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21393312 tggagaccaaccgcagggacgtggaggaatggttcgccaggcag 21393269



 Score =  313 bits (158), Expect = 1e-82
 Identities = 158/158 (100%)
 Strand = Plus / Minus

                                                                            
Query: 499      gtatgaggtggagcgttcctcgcggcagctggtggagtcagacatcaacagcctgcgtag 558
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21395380 gtatgaggtggagcgttcctcgcggcagctggtggagtcagacatcaacagcctgcgtag 21395321

                                                                            
Query: 559      gatcttggacgagctgaccctctgcaaggctgacctggagacccaggtggagtccctgag 618
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21395320 gatcttggacgagctgaccctctgcaaggctgacctggagacccaggtggagtccctgag 21395261

                                                      
Query: 619      ggaggagctgctctgcctcaagaagaaccatgaggagg 656
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 21395260 ggaggagctgctctgcctcaagaagaaccatgaggagg 21395223



 Score =  309 bits (156), Expect = 2e-81
 Identities = 162/164 (98%)
 Strand = Plus / Minus

                                                                            
Query: 654      aggaagtcaactccctgcggagccagctcggggaccgcctcaacatcgaggtggacgccg 713
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21406702 aggaagtcaactccctgcggagccagctcggggaccgcctcaacatcgaggtggacgccg 21406643

                                                                            
Query: 714      ctcccaccgtcgacctgaacagcgtgctcaacgagaccaggagccagtacgaggccctgg 773
                ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 21406642 ctcccactgtcgacctgaacagcgtgctcagcgagaccaggagccagtacgaggccctgg 21406583

                                                            
Query: 774      tggagaccaaccgcagggacgtggaggaatggttcgccaggcag 817
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21406582 tggagaccaaccgcagggacgtggaggaatggttcgccaggcag 21406539



 Score =  301 bits (152), Expect = 5e-79
 Identities = 161/164 (98%)
 Strand = Plus / Minus

                                                                            
Query: 654      aggaagtcaactccctgcggagccagctcggggaccgcctcaacatcgaggtggacgccg 713
                |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21378258 aggaagtcaactccctccggagccagctcggggaccgcctcaacatcgaggtggacgccg 21378199

                                                                            
Query: 714      ctcccaccgtcgacctgaacagcgtgctcaacgagaccaggagccagtacgaggccctgg 773
                |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 21378198 ctcccaccgtcgacctgaacagcgtgctcagcgagaccaggagccagtacgaggccctcg 21378139

                                                            
Query: 774      tggagaccaaccgcagggacgtggaggaatggttcgccaggcag 817
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21378138 tggagaccaaccgcagggacgtggaggaatggttcgccaggcag 21378095



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                            
Query: 815      cagaccgaggagctgaacaagcaggtggtgtccagctcggagcagctgcagtcctaccag 874
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21364583 cagaccgaggagctgaacaagcaggtggtgtccagctcggagcagctgcagtcctaccag 21364524

                                                                            
Query: 875      gcggagatcatcgagctgagacgcacggtcaacgccctggaggtggagctgcaggcccag 934
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21364523 gcggagatcatcgagctgagacgcacggtcaacgccctggaggtggagctgcaggcccag 21364464

                         
Query: 935      cacaacctg 943
                |||||||||
Sbjct: 21364463 cacaacctg 21364455



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                            
Query: 815      cagaccgaggagctgaacaagcaggtggtgtccagctcggagcagctgcagtcctaccag 874
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21377999 cagaccgaggagctgaacaagcaggtggtgtccagctcggagcagctgcagtcctaccag 21377940

                                                                            
Query: 875      gcggagatcatcgagctgagacgcacggtcaacgccctggaggtggagctgcaggcccag 934
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21377939 gcggagatcatcgagctgagacgcacggtcaacgccctggaggtggagctgcaggcccag 21377880

                         
Query: 935      cacaacctg 943
                |||||||||
Sbjct: 21377879 cacaacctg 21377871



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                            
Query: 815      cagaccgaggagctgaacaagcaggtggtgtccagctcggagcagctgcagtcctaccag 874
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21393173 cagaccgaggagctgaacaagcaggtggtgtccagctcggagcagctgcagtcctaccag 21393114

                                                                            
Query: 875      gcggagatcatcgagctgagacgcacggtcaacgccctggaggtggagctgcaggcccag 934
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21393113 gcggagatcatcgagctgagacgcacggtcaacgccctggaggtggagctgcaggcccag 21393054

                         
Query: 935      cacaacctg 943
                |||||||||
Sbjct: 21393053 cacaacctg 21393045



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                            
Query: 815      cagaccgaggagctgaacaagcaggtggtgtccagctcggagcagctgcagtcctaccag 874
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21406443 cagaccgaggagctgaacaagcaggtggtgtccagctcggagcagctgcagtcctaccag 21406384

                                                                            
Query: 875      gcggagatcatcgagctgagacgcacggtcaacgccctggaggtggagctgcaggcccag 934
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21406383 gcggagatcatcgagctgagacgcacggtcaacgccctggaggtggagctgcaggcccag 21406324

                         
Query: 935      cacaacctg 943
                |||||||||
Sbjct: 21406323 cacaacctg 21406315



 Score =  216 bits (109), Expect = 2e-53
 Identities = 175/197 (88%)
 Strand = Plus / Minus

                                                                            
Query: 969      cggagacggaggcccgctacagctcgcagctggcccaggtgcagggcctgatcggcaacg 1028
                ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct: 21459939 cggagacggaggcccgctacagctcacagctggcccagatgcagggcctgatcagcaacg 21459880

                                                                            
Query: 1029     tggaggctcagctggcggagatccgggctgacctggagcgtcagaaccaggagtaccagg 1088
                ||||||| |||||||| ||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 21459879 tggaggcccagctggccgagatccgctgtgacctggagcgtcagaaccaggagtaccagg 21459820

                                                                            
Query: 1089     tgctgctggacgtgcgggcccggctggagtgtgagatcaacacgtaccgggggctgctgg 1148
                |||||||||| ||   ||||||||||||||  ||||||  |||||||||  | |||||||
Sbjct: 21459819 tgctgctggatgtcaaggcccggctggagtcggagatcgccacgtaccgccgcctgctgg 21459760

                                 
Query: 1149     agagcgaggactgcaag 1165
                || | || |||||||||
Sbjct: 21459759 agggagaagactgcaag 21459743



 Score =  204 bits (103), Expect = 9e-50
 Identities = 118/123 (95%)
 Strand = Plus / Minus

                                                                            
Query: 202      ctggttctgcgagggcgccttcaatggcaacgagaaggagaccatgcagtttctgaacga 261
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 21462922 ctggttctgcgagggcgccttcaatggcaacgagaaggagaccatgcagttcctgaacga 21462863

                                                                            
Query: 262      ccggctggccagctacctggagaaggtgcgccagctggagtgggacaacgcagagctgga 321
                ||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||
Sbjct: 21462862 ccggctggccaactacctggagaaggtgcgccagctggagcgggacaatgcggagctgga 21462803

                   
Query: 322      gag 324
                |||
Sbjct: 21462802 gag 21462800



 Score =  200 bits (101), Expect = 1e-48
 Identities = 122/129 (94%)
 Strand = Plus / Minus

                                                                            
Query: 520      gcggcagctggtggagtcagacatcaacagcctgcgtaggatcttggacgagctgaccct 579
                |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct: 21379301 gcggcagctggtggagtcagacatcaacagcctgcgaaggaccctggacgagctgaccct 21379242

                                                                            
Query: 580      ctgcaaggctgacctggagacccaggtggagtccctgagggaggagctgctctgcctcaa 639
                 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 21379241 gtgcaaggctgacctggaggcccaggtggagtccctgaaggaggagctgctctgcctcaa 21379182

                         
Query: 640      gaagaacca 648
                | |||||||
Sbjct: 21379181 gcagaacca 21379173



 Score =  192 bits (97), Expect = 4e-46
 Identities = 127/137 (92%)
 Strand = Plus / Minus

                                                                            
Query: 520      gcggcagctggtggagtcagacatcaacagcctgcgtaggatcttggacgagctgaccct 579
                |||||||||||||||||||||||||||  ||||||| |||||| ||||||||||||||||
Sbjct: 21407858 gcggcagctggtggagtcagacatcaatggcctgcgcaggatcctggacgagctgaccct 21407799

                                                                            
Query: 580      ctgcaaggctgacctggagacccaggtggagtccctgagggaggagctgctctgcctcaa 639
                 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct: 21407798 gtgcaaggctgacctggaggcccaggtggagtccctgaaggaggagctgctctgcctgaa 21407739

                                 
Query: 640      gaagaaccatgaggagg 656
                ||  |||||||||||||
Sbjct: 21407738 gagcaaccatgaggagg 21407722



 Score =  184 bits (93), Expect = 9e-44
 Identities = 120/129 (93%)
 Strand = Plus / Minus

                                                                            
Query: 520      gcggcagctggtggagtcagacatcaacagcctgcgtaggatcttggacgagctgaccct 579
                |||||||||||||||||||||| | ||| ||||||| |||||| ||||||||||||||||
Sbjct: 21366234 gcggcagctggtggagtcagacctgaacggcctgcgcaggatcctggacgagctgaccct 21366175

                                                                            
Query: 580      ctgcaaggctgacctggagacccaggtggagtccctgagggaggagctgctctgcctcaa 639
                 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 21366174 gtgcaaggctgacctggaggcccaggtggagtccctgaaggaggagctgctctgcctcaa 21366115

                         
Query: 640      gaagaacca 648
                | |||||||
Sbjct: 21366114 gcagaacca 21366106



 Score =  184 bits (93), Expect = 9e-44
 Identities = 123/133 (92%)
 Strand = Plus / Minus

                                                                            
Query: 524      cagctggtggagtcagacatcaacagcctgcgtaggatcttggacgagctgaccctctgc 583
                |||||||||||||||||||| ||| ||||||| |||||| |||| || |||||||| |||
Sbjct: 21450304 cagctggtggagtcagacatgaacggcctgcgcaggatcctggatgatctgaccctgtgc 21450245

                                                                            
Query: 584      aaggctgacctggagacccaggtggagtccctgagggaggagctgctctgcctcaagaag 643
                ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 21450244 aaggctgacctggaggcccaggtggagtccctgaaggaggagctgctctgcctcaagaag 21450185

                             
Query: 644      aaccatgaggagg 656
                |||||||| ||||
Sbjct: 21450184 aaccatgaagagg 21450172



 Score =  178 bits (90), Expect = 5e-42
 Identities = 90/90 (100%)
 Strand = Plus / Minus

                                                                            
Query: 414      agattctgagtgccaagtctgagaacaccaggctggtggtgcaggtcgacaatgccaagc 473
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21396051 agattctgagtgccaagtctgagaacaccaggctggtggtgcaggtcgacaatgccaagc 21395992

                                              
Query: 474      tggccgccgatgacttcagaaccaagtatg 503
                ||||||||||||||||||||||||||||||
Sbjct: 21395991 tggccgccgatgacttcagaaccaagtatg 21395962



 Score =  151 bits (76), Expect = 1e-33
 Identities = 112/124 (90%)
 Strand = Plus / Minus

                                                                            
Query: 815      cagaccgaggagctgaacaagcaggtggtgtccagctcggagcagctgcagtcctaccag 874
                ||||| |||||||||||| ||||||||||||||||||| ||||||||||||| || ||||
Sbjct: 21460258 cagacggaggagctgaaccagcaggtggtgtccagctccgagcagctgcagtgctgccag 21460199

                                                                            
Query: 875      gcggagatcatcgagctgagacgcacggtcaacgccctggaggtggagctgcaggcccag 934
                 | |||||||||||||| |||||||  ||||||||||||||| | |||||||||||||||
Sbjct: 21460198 acagagatcatcgagctaagacgcaatgtcaacgccctggagatcgagctgcaggcccag 21460139

                    
Query: 935      caca 938
                ||||
Sbjct: 21460138 caca 21460135



 Score =  143 bits (72), Expect = 3e-31
 Identities = 111/124 (89%)
 Strand = Plus / Minus

                                                                            
Query: 815      cagaccgaggagctgaacaagcaggtggtgtccagctcggagcagctgcagtcctaccag 874
                ||||| |||||||||||| ||||||||||  ||||||| |||||||||||||||| ||||
Sbjct: 21449569 cagacggaggagctgaaccagcaggtggtaaccagctcagagcagctgcagtcctgccag 21449510

                                                                            
Query: 875      gcggagatcatcgagctgagacgcacggtcaacgccctggaggtggagctgcaggcccag 934
                || || ||||| |||||||||||||  ||||||||||||||| | |||||||||||||||
Sbjct: 21449509 gcagatatcatggagctgagacgcaatgtcaacgccctggagatcgagctgcaggcccag 21449450

                    
Query: 935      caca 938
                ||||
Sbjct: 21449449 caca 21449446



 Score =  139 bits (70), Expect = 5e-30
 Identities = 97/106 (91%)
 Strand = Plus / Minus

                                                                            
Query: 219      ccttcaatggcaacgagaaggagaccatgcagtttctgaacgaccggctggccagctacc 278
                |||||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||||
Sbjct: 21441308 ccttcaatggcaacgagaaggagaccctgcagttcctgaacgaccggctggccaaatacc 21441249

                                                              
Query: 279      tggagaaggtgcgccagctggagtgggacaacgcagagctggagag 324
                ||||||||||||| |||||||||  |||||| || |||||||||||
Sbjct: 21441248 tggagaaggtgcggcagctggagcaggacaatgcggagctggagag 21441203



 Score =  137 bits (69), Expect = 2e-29
 Identities = 120/137 (87%)
 Strand = Plus / Minus

                                                                            
Query: 520      gcggcagctggtggagtcagacatcaacagcctgcgtaggatcttggacgagctgaccct 579
                |||||||||||||||| | || | |||| |||||||  ||||| ||||||||||||| ||
Sbjct: 21439716 gcggcagctggtggaggctgataccaacggcctgcgccggatcctggacgagctgacgct 21439657

                                                                            
Query: 580      ctgcaaggctgacctggagacccaggtggagtccctgagggaggagctgctctgcctcaa 639
                 |||||||||||||||||||  ||||||||||||||||  ||||||||| | ||||||||
Sbjct: 21439656 gtgcaaggctgacctggagatgcaggtggagtccctgaaagaggagctgatgtgcctcaa 21439597

                                 
Query: 640      gaagaaccatgaggagg 656
                ||||||||| |||||||
Sbjct: 21439596 gaagaaccacgaggagg 21439580



 Score =  137 bits (69), Expect = 2e-29
 Identities = 159/189 (84%)
 Strand = Plus / Minus

                                                                            
Query: 227      ggcaacgagaaggagaccatgcagtttctgaacgaccggctggccagctacctggagaag 286
                ||||||||||||||||| |||||||  || || |||||||||||||||||||||||||||
Sbjct: 21452148 ggcaacgagaaggagacaatgcagtccctcaatgaccggctggccagctacctggagaag 21452089

                                                                            
Query: 287      gtgcgccagctggagtgggacaacgcagagctggagaggcagatccaggagcggtctcag 346
                ||||| | ||||||| |||| ||| | ||||||||| | |  ||||  ||| ||| | ||
Sbjct: 21452088 gtgcggcggctggagcgggagaactcggagctggagggccgcatccgagagtggtgtgag 21452029

                                                                            
Query: 347      cagcaggagcccctggtgtgtcccaactaccagtcctacttccggaccattgaggagctc 406
                ||||||||||||    |||| ||| |||||||||||||||||| |||||| ||||| |||
Sbjct: 21452028 cagcaggagccctacctgtgccccgactaccagtcctacttccagaccatcgaggaactc 21451969

                         
Query: 407      cagcagaag 415
                ||| |||||
Sbjct: 21451968 cagaagaag 21451960



 Score =  129 bits (65), Expect = 4e-27
 Identities = 119/137 (86%)
 Strand = Plus / Minus

                                                                            
Query: 520      gcggcagctggtggagtcagacatcaacagcctgcgtaggatcttggacgagctgaccct 579
                |||||||||||||||| | || | |||| |||||||  ||||| |||| |||||||| ||
Sbjct: 21461412 gcggcagctggtggaggctgataccaacggcctgcgccggatcctggatgagctgacgct 21461353

                                                                            
Query: 580      ctgcaaggctgacctggagacccaggtggagtccctgagggaggagctgctctgcctcaa 639
                 |||||||||||||||||||  |||||||||||||||| |||||||||| | ||||||||
Sbjct: 21461352 gtgcaaggctgacctggagatgcaggtggagtccctgaaggaggagctgatatgcctcaa 21461293

                                 
Query: 640      gaagaaccatgaggagg 656
                |||||| || |||||||
Sbjct: 21461292 gaagaatcacgaggagg 21461276



 Score =  119 bits (60), Expect = 4e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 414      agattctgagtgccaagtctgagaacaccaggctggtggtgcaggtcgacaatgccaagc 473
                |||| ||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||
Sbjct: 21380648 agatcctgagtggcaagtctgagaacgccaggctggtggtgcagattgacaatgccaagc 21380589

                                            
Query: 474      tggccgccgatgacttcagaaccaagta 501
                |||| |||||||||||||| ||||||||
Sbjct: 21380588 tggctgccgatgacttcaggaccaagta 21380561



 Score =  117 bits (59), Expect = 2e-23
 Identities = 95/107 (88%)
 Strand = Plus / Minus

                                                                            
Query: 231      acgagaaggagaccatgcagtttctgaacgaccggctggccagctacctggagaaggtgc 290
                ||||||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 21422215 acgagaagctgaccatgcagttcctgaatgaccggctggccagctacctggagaaggtgc 21422156

                                                               
Query: 291      gccagctggagtgggacaacgcagagctggagaggcagatccaggag 337
                | ||||||||| ||||| || | || ||||||| |||||||| ||||
Sbjct: 21422155 ggcagctggagggggacgacacggacctggagaagcagatcctggag 21422109



 Score =  115 bits (58), Expect = 7e-23
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                            
Query: 427      caagtctgagaacaccaggctggtggtgcaggtcgacaatgccaagctggccgccgatga 486
                ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 21408285 caagtctgagaacgccaggctggtggtgcagatcgacaatgccaaactggccgccgatga 21408226

                              
Query: 487      cttcagaaccaagt 500
                |||||| |||||||
Sbjct: 21408225 cttcaggaccaagt 21408212



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 117/141 (82%)
 Strand = Plus / Minus

                                                                            
Query: 677      cagctcggggaccgcctcaacatcgaggtggacgccgctcccaccgtcgacctgaacagc 736
                ||||| ||||||||||| ||||||||||| |||||||| ||| |||| ||||||||||| 
Sbjct: 21438264 cagcttggggaccgcctgaacatcgaggtagacgccgcgccccccgtggacctgaacagg 21438205

                                                                            
Query: 737      gtgctcaacgagaccaggagccagtacgaggccctggtggagaccaaccgcagggacgtg 796
                |||||  | ||||   |  | || || ||||| ||||||||| ||||||||||||| |||
Sbjct: 21438204 gtgctggaagagatgcgttgtcaatatgaggctctggtggagtccaaccgcagggatgtg 21438145

                                     
Query: 797      gaggaatggttcgccaggcag 817
                ||||| |||||| ||| ||||
Sbjct: 21438144 gaggagtggttcaccatgcag 21438124



 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1023     gcaacgtggaggctcagctggcggagatccgggctgacctggagcgtcagaaccaggagt 1082
                ||||||||||||  |||||| | ||||||| ||| ||||||||||  ||||||||| |||
Sbjct: 21419097 gcaacgtggaggagcagctgtctgagatcccggcggacctggagcagcagaaccagtagt 21419038

                                                   
Query: 1083     accaggtgctgctggacgtgcgggcccggctggag 1117
                |||||||||||||||| || | |||| ||||||||
Sbjct: 21419037 accaggtgctgctggatgtccaggcctggctggag 21419003



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                            
Query: 427      caagtctgagaacaccaggctggtggtgcaggtcgacaatgccaagctggccgccgatga 486
                ||||||||||||  ||||||||||||||||| ||||||| |||||||||||  | |||||
Sbjct: 21366841 caagtctgagaatgccaggctggtggtgcagatcgacaacgccaagctggcttctgatga 21366782

                              
Query: 487      cttcagaaccaagt 500
                |||||| |||||||
Sbjct: 21366781 cttcaggaccaagt 21366768



 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                            
Query: 441      ccaggctggtggtgcaggtcgacaatgccaagctggccgccgatgacttcagaaccaagt 500
                ||||||||||||||||| | |||||||||||||||||||| ||||||||||| | |||||
Sbjct: 21450590 ccaggctggtggtgcagattgacaatgccaagctggccgcagatgacttcaggagcaagt 21450531

                 
Query: 501      a 501
                |
Sbjct: 21450530 a 21450530



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                            
Query: 1031     gaggctcagctggcggagatccgggctgacctggagcgtcagaaccaggagtaccaggtg 1090
                |||||||||||||| ||||||||||  | ||||||  | |||||||| || ||| || | 
Sbjct: 21988936 gaggctcagctggcagagatccggggggccctggaaagacagaaccaagaatacgagatt 21988877

                                                               
Query: 1091     ctgctggacgtgcgggcccggctggagtgtgagatcaacacgtaccg 1137
                ||||||||| | ||| ||||||||||||||||||| | |||||||||
Sbjct: 21988876 ctgctggacatccggtcccggctggagtgtgagattaccacgtaccg 21988830



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                            
Query: 1031     gaggctcagctggcggagatccgggctgacctggagcgtcagaaccaggagtaccaggtg 1090
                |||||||||||||| ||||||||||  | ||||||  | |||||||| || ||| || | 
Sbjct: 21692519 gaggctcagctggcagagatccggggggccctggaaagacagaaccaagaatacgagatt 21692460

                                                               
Query: 1091     ctgctggacgtgcgggcccggctggagtgtgagatcaacacgtaccg 1137
                ||||||||| | ||| |||| |||||||||||||| | |||||||||
Sbjct: 21692459 ctgctggacatccggtcccgtctggagtgtgagattaccacgtaccg 21692413



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                              
Query: 1057     tgacctggagcgtcagaaccaggagtaccaggtgctgctggacgtg 1102
                |||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 21322445 tgacatggagcgccagaaccacgagtaccaggtgctgctggacgtg 21322490



 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 103/127 (81%)
 Strand = Plus / Minus

                                                                            
Query: 530      gtggagtcagacatcaacagcctgcgtaggatcttggacgagctgaccctctgcaaggct 589
                |||||| | ||||||||| ||||||| ||| |  |||||||||||||| |   |||| ||
Sbjct: 21492833 gtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccttgaccaagact 21492774

                                                                            
Query: 590      gacctggagacccaggtggagtccctgagggaggagctgctctgcctcaagaagaaccat 649
                ||||||||||  ||| | |||  |||||  |||||||||  || ||| ||||||||||||
Sbjct: 21492773 gacctggagatgcagatcgagagcctgaacgaggagctggcctacctgaagaagaaccat 21492714

                       
Query: 650      gaggagg 656
                |||||||
Sbjct: 21492713 gaggagg 21492707



 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 103/127 (81%)
 Strand = Plus / Minus

                                                                            
Query: 530      gtggagtcagacatcaacagcctgcgtaggatcttggacgagctgaccctctgcaaggct 589
                |||||| | ||||||||| | ||||| ||| |  ||||||||||||||||   ||  || 
Sbjct: 21883738 gtggaggccgacatcaacgggctgcgcagggtgctggacgagctgaccctggtcagagcc 21883679

                                                                            
Query: 590      gacctggagacccaggtggagtccctgagggaggagctgctctgcctcaagaagaaccat 649
                ||||||||||||||| | ||| ||||||  |||||||||  || ||| ||||||||||| 
Sbjct: 21883678 gacctggagacccagatcgagaccctgaacgaggagctggcctacctgaagaagaaccac 21883619

                       
Query: 650      gaggagg 656
                |||||||
Sbjct: 21883618 gaggagg 21883612


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,346,556
Number of extensions: 360
Number of successful extensions: 360
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 46
Length of query: 1398
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1377
Effective length of database: 2,808,413,156
Effective search space: 3867184915812
Effective search space used: 3867184915812
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)