BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012160
         (974 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001076854.1| keratin, type II cuticular Hb3 [Bos taurus].      462   e-130
Alignment   gi|NP_001069674.1| keratin, type II cuticular Hb1 [Bos taurus].      457   e-129
Alignment   gi|NP_001179997.1| keratin, type II cuticular Hb6 [Bos taurus].      451   e-127
Alignment   gi|XP_002687299.1| PREDICTED: keratin 86 [Bos taurus].               451   e-127
Alignment   gi|NP_001069381.1| keratin, type II cuticular Hb5 [Bos taurus].      416   e-116
Alignment   gi|XP_608645.2| PREDICTED: intermediate filament type II kerati...   394   e-110
Alignment   gi|XP_001254951.1| PREDICTED: intermediate filament type II ker...   394   e-110
Alignment   gi|XP_002687301.1| PREDICTED: intermediate filament type II ker...   385   e-107
Alignment   gi|NP_001094581.1| keratin 85 [Bos taurus].                          363   e-101
Alignment   gi|NP_001179264.1| keratin, type II cuticular Hb4 [Bos taurus].      306   1e-83

>ref|NP_001076854.1| keratin, type II cuticular Hb3 [Bos taurus].
          Length = 493

 Score =  462 bits (1188), Expect = e-130
 Identities = 239/311 (76%), Positives = 253/311 (81%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXX 198
           M+C  S +G+ FG R+FSC SACGPRPGRCCI+AAPYRGISCYRGLT             
Sbjct: 1   MTCGFSTVGSGFGSRAFSCVSACGPRPGRCCITAAPYRGISCYRGLTGGFGSRSVCGGFR 60

Query: 199 XXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 378
                             SPPCITTVS+NE LLTPLNLEIDPNAQCVKQEEKEQIK LNN
Sbjct: 61  AGYCSRSFGYRSGGVGGLSPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKCLNN 120

Query: 379 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 558
           RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLF GYIETLRREAE VEADSGR
Sbjct: 121 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFEGYIETLRREAECVEADSGR 180

Query: 559 LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQE 738
           L+SELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAY++KSDLEAN EAL QE
Sbjct: 181 LSSELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYIRKSDLEANSEALIQE 240

Query: 739 IDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAES 918
           IDF          VL A+ISDTSVIVKMDNSR L+M+NIVAE +AQYDDIASRSRAEAES
Sbjct: 241 IDFLRRLYEEEIRVLQANISDTSVIVKMDNSRGLNMDNIVAEIKAQYDDIASRSRAEAES 300

Query: 919 WYRSNGEEIRA 951
           WYRS  EEI+A
Sbjct: 301 WYRSKCEEIKA 311


>ref|NP_001069674.1| keratin, type II cuticular Hb1 [Bos taurus].
          Length = 500

 Score =  457 bits (1175), Expect = e-129
 Identities = 236/303 (77%), Positives = 249/303 (82%)
 Frame = +1

Query: 43  GAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXX 222
           G+ F  R+FSC SACGPRPGRCCI+AAPYRGISCYRGLT                     
Sbjct: 4   GSGFRGRAFSCVSACGPRPGRCCITAAPYRGISCYRGLTGGFGSRSICGGFRAGSFGRSF 63

Query: 223 XXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDK 402
                     +PPCITTVS+NE LLTPLNLEIDPNAQCVKQEEKEQIK LNNRFAAFIDK
Sbjct: 64  GYRSGGVGGLNPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKCLNNRFAAFIDK 123

Query: 403 VRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHV 582
           VRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAE VEADSGRL+SELN +
Sbjct: 124 VRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAECVEADSGRLSSELNSL 183

Query: 583 QEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXX 762
           QEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAY++KSDLEANVEAL QEIDF     
Sbjct: 184 QEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANVEALIQEIDFLRRLY 243

Query: 763 XXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEE 942
                VL AHISDTSVIVKMDNSRDL+M+NIVAE +AQYDDIASRSRAEAESWYRS  EE
Sbjct: 244 EEEIRVLQAHISDTSVIVKMDNSRDLNMDNIVAEIKAQYDDIASRSRAEAESWYRSKCEE 303

Query: 943 IRA 951
           I+A
Sbjct: 304 IKA 306


>ref|NP_001179997.1| keratin, type II cuticular Hb6 [Bos taurus].
          Length = 486

 Score =  451 bits (1160), Expect = e-127
 Identities = 236/311 (75%), Positives = 250/311 (80%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXX 198
           M+C S R      + +FSC SACGPRPGRCCI+AAPYRGISCYRGLT             
Sbjct: 1   MTCGSYR-----ALPAFSCVSACGPRPGRCCITAAPYRGISCYRGLTGGFGSRSVCGGFR 55

Query: 199 XXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 378
                             SPPCITTVS+NE LLTPLNLEIDPNAQCVKQEEKEQIK LNN
Sbjct: 56  AGYCGRSFGYRSGGVGGLSPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKCLNN 115

Query: 379 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 558
           RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAE VEADSGR
Sbjct: 116 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAECVEADSGR 175

Query: 559 LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQE 738
           L+SELN +QEVLEGYKKKYEEEV+LRATAENEFVALKKDVDCAY++KSDLEANVEAL QE
Sbjct: 176 LSSELNSLQEVLEGYKKKYEEEVSLRATAENEFVALKKDVDCAYLRKSDLEANVEALIQE 235

Query: 739 IDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAES 918
           IDF          VL AHISDTSVIVKMDNSRDL+M+NIVAE +A YDDIASRSRAEAES
Sbjct: 236 IDFLRRLYEEEIRVLQAHISDTSVIVKMDNSRDLNMDNIVAEIKAHYDDIASRSRAEAES 295

Query: 919 WYRSNGEEIRA 951
           WYRS  EEI+A
Sbjct: 296 WYRSKCEEIKA 306


>ref|XP_002687299.1| PREDICTED: keratin 86 [Bos taurus].
          Length = 486

 Score =  451 bits (1160), Expect = e-127
 Identities = 236/311 (75%), Positives = 250/311 (80%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXX 198
           M+C S R      + +FSC SACGPRPGRCCI+AAPYRGISCYRGLT             
Sbjct: 1   MTCGSYR-----ALPAFSCVSACGPRPGRCCITAAPYRGISCYRGLTGGFGSRSVCGGFR 55

Query: 199 XXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 378
                             SPPCITTVS+NE LLTPLNLEIDPNAQCVKQEEKEQIK LNN
Sbjct: 56  AGYCGRSFGYRSGGVGGLSPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKCLNN 115

Query: 379 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 558
           RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAE VEADSGR
Sbjct: 116 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAECVEADSGR 175

Query: 559 LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQE 738
           L+SELN +QEVLEGYKKKYEEEV+LRATAENEFVALKKDVDCAY++KSDLEANVEAL QE
Sbjct: 176 LSSELNSLQEVLEGYKKKYEEEVSLRATAENEFVALKKDVDCAYLRKSDLEANVEALIQE 235

Query: 739 IDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAES 918
           IDF          VL AHISDTSVIVKMDNSRDL+M+NIVAE +A YDDIASRSRAEAES
Sbjct: 236 IDFLRRLYEEEIRVLQAHISDTSVIVKMDNSRDLNMDNIVAEIKAHYDDIASRSRAEAES 295

Query: 919 WYRSNGEEIRA 951
           WYRS  EEI+A
Sbjct: 296 WYRSKCEEIKA 306


>ref|NP_001069381.1| keratin, type II cuticular Hb5 [Bos taurus].
          Length = 507

 Score =  416 bits (1069), Expect = e-116
 Identities = 223/323 (69%), Positives = 246/323 (76%), Gaps = 12/323 (3%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGV-RSFSCASACGPRPG-RCCISAAPYRGISCYRGLTXXXXXXXXXXX 192
           MSC S R+   + V R+FS  SA  P+ G RCCI+AAPYRG+SCYRGLT           
Sbjct: 1   MSCRSYRISPGYSVTRTFSSCSAVAPKTGSRCCITAAPYRGVSCYRGLTGFGSRSVSALG 60

Query: 193 XXXXXXXXXXXXXXXXXXX----------PSPPCITTVSINECLLTPLNLEIDPNAQCVK 342
                                         SPPCITTVS+NE LLTPLNLEIDPNAQCVK
Sbjct: 61  SCGPRIAVGGFRAGSCNRSFGYRSGGVGGLSPPCITTVSVNESLLTPLNLEIDPNAQCVK 120

Query: 343 QEEKEQIKFLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLR 522
            EEKEQIK LN+RFAAFIDKVRFLEQQNKLLETK QFYQN++CCESNLEPLFNGYIETLR
Sbjct: 121 HEEKEQIKNLNSRFAAFIDKVRFLEQQNKLLETKWQFYQNQRCCESNLEPLFNGYIETLR 180

Query: 523 REAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKS 702
           REAE VEAD GRLASELNHVQEVLEGYKKKYEEEVALRATAENEFV LKKDVDCAY++KS
Sbjct: 181 REAEHVEADGGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVVLKKDVDCAYLRKS 240

Query: 703 DLEANVEALTQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYD 882
           DLEANVEAL +E +F          +L+AHISDTSVIVKMDNSRDL+M+ +VAE +AQYD
Sbjct: 241 DLEANVEALVEESNFLKRLYDEEIQILNAHISDTSVIVKMDNSRDLNMDCVVAEIKAQYD 300

Query: 883 DIASRSRAEAESWYRSNGEEIRA 951
           DIASRSRAEAESWYR+  EE++A
Sbjct: 301 DIASRSRAEAESWYRNKCEEMKA 323


>ref|XP_608645.2| PREDICTED: intermediate filament type II keratin-like [Bos taurus].
          Length = 480

 Score =  394 bits (1012), Expect = e-110
 Identities = 204/314 (64%), Positives = 241/314 (76%)
 Frame = +1

Query: 10  RRTMSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXX 189
           R + SC++++  AP   R+FSC SACGPRP RCCI+AAPYRG+SCYRGLT          
Sbjct: 15  RSSSSCVTTQRYAPG--RTFSCVSACGPRPSRCCITAAPYRGVSCYRGLT---GGFSSRS 69

Query: 190 XXXXXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKF 369
                               PSPPCIT+VS+N+ LL PLNLEIDPNAQ +K +EKEQIK 
Sbjct: 70  VCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKS 129

Query: 370 LNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEAD 549
           LN++FAAFIDKV FLEQQNKLLETK +FYQN++CCESNLEPLFNGYIETLRREAE VEAD
Sbjct: 130 LNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEAD 189

Query: 550 SGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEAL 729
           +GRLASELN +QEVL+GYKKKYEEEVAL+ TAENEFV +K++V+ AYV K DLEAN  +L
Sbjct: 190 TGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSL 249

Query: 730 TQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAE 909
            +E+ F          V+ AHISDTSV+VKMDNSR L+M++IVAE +A YD+IASRSRAE
Sbjct: 250 VEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAE 309

Query: 910 AESWYRSNGEEIRA 951
           AESWYRS  EEI+A
Sbjct: 310 AESWYRSKYEEIKA 323


>ref|XP_001254951.1| PREDICTED: intermediate filament type II keratin-like [Bos taurus].
          Length = 480

 Score =  394 bits (1012), Expect = e-110
 Identities = 204/314 (64%), Positives = 241/314 (76%)
 Frame = +1

Query: 10  RRTMSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXX 189
           R + SC++++  AP   R+FSC SACGPRP RCCI+AAPYRG+SCYRGLT          
Sbjct: 15  RSSSSCVTTQRYAPG--RTFSCVSACGPRPSRCCITAAPYRGVSCYRGLT---GGFSSRS 69

Query: 190 XXXXXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKF 369
                               PSPPCIT+VS+N+ LL PLNLEIDPNAQ +K +EKEQIK 
Sbjct: 70  VCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKS 129

Query: 370 LNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEAD 549
           LN++FAAFIDKV FLEQQNKLLETK +FYQN++CCESNLEPLFNGYIETLRREAE VEAD
Sbjct: 130 LNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEAD 189

Query: 550 SGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEAL 729
           +GRLASELN +QEVL+GYKKKYEEEVAL+ TAENEFV +K++V+ AYV K DLEAN  +L
Sbjct: 190 TGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSL 249

Query: 730 TQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAE 909
            +E+ F          V+ AHISDTSV+VKMDNSR L+M++IVAE +A YD+IASRSRAE
Sbjct: 250 VEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAE 309

Query: 910 AESWYRSNGEEIRA 951
           AESWYRS  EEI+A
Sbjct: 310 AESWYRSKYEEIKA 323


>ref|XP_002687301.1| PREDICTED: intermediate filament type II keratin-like [Bos taurus].
          Length = 482

 Score =  385 bits (990), Expect = e-107
 Identities = 203/316 (64%), Positives = 240/316 (75%), Gaps = 2/316 (0%)
 Frame = +1

Query: 10  RRTMSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXX 189
           R + SC++++  AP   R+FSC SACGPRP RCCI+AAPYRG+SCYRGLT          
Sbjct: 15  RSSSSCVTTQRYAPG--RTFSCVSACGPRPSRCCITAAPYRGVSCYRGLT---GGFSSRS 69

Query: 190 XXXXXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKF 369
                               PSPPCIT+VS+N+ LL PLNLEIDPNAQ +K +EKEQIK 
Sbjct: 70  VCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKS 129

Query: 370 LNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEAD 549
           LN++FAAFIDKV FLEQQNKLLETK +FYQN++CCESNLEPLFNGYIETLRREAE VEAD
Sbjct: 130 LNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEAD 189

Query: 550 SGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEAL 729
           +GRLASELN +QEVL+GYKKKYEEEVAL+ TAENEFV +K++V+ AYV K DLEAN  +L
Sbjct: 190 TGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSL 249

Query: 730 TQEIDF--XXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSR 903
            +E+              V+ AHISDTSV+VKMDNSR L+M++IVAE +A YD+IASRSR
Sbjct: 250 VEEVCVLGLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSR 309

Query: 904 AEAESWYRSNGEEIRA 951
           AEAESWYRS  EEI+A
Sbjct: 310 AEAESWYRSKYEEIKA 325


>ref|NP_001094581.1| keratin 85 [Bos taurus].
          Length = 493

 Score =  363 bits (933), Expect = e-101
 Identities = 180/233 (77%), Positives = 204/233 (87%)
 Frame = +1

Query: 250 PSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNK 429
           P PPCITTVS+NE LL PLNLEIDP AQCVK EEKEQIK LNN+FAAFIDKVRFLEQQNK
Sbjct: 90  PIPPCITTVSVNESLLAPLNLEIDPKAQCVKHEEKEQIKGLNNKFAAFIDKVRFLEQQNK 149

Query: 430 LLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKK 609
           LLETKLQFYQN QCCESNLEPLFNGYIETLRREAE VEA+SGRLASELNHV+EVLEGYKK
Sbjct: 150 LLETKLQFYQNHQCCESNLEPLFNGYIETLRREAECVEANSGRLASELNHVEEVLEGYKK 209

Query: 610 KYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHA 789
           KYEEEVAL+ TAENEFV LKKD+DCAY++K+DLEANVEAL +E+ F          +L +
Sbjct: 210 KYEEEVALKTTAENEFVVLKKDIDCAYLRKADLEANVEALKEEMSFLQSLYDEEIYLLQS 269

Query: 790 HISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
            ISDTSV+VKMDNSR+L+M+++VAE +AQYD IASRSRAE ESWY++  EE++
Sbjct: 270 QISDTSVVVKMDNSRELNMDSVVAEIKAQYDGIASRSRAEVESWYQTKCEEMK 322


>ref|NP_001179264.1| keratin, type II cuticular Hb4 [Bos taurus].
          Length = 593

 Score =  306 bits (785), Expect = 1e-83
 Identities = 151/233 (64%), Positives = 191/233 (81%)
 Frame = +1

Query: 250 PSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNK 429
           P+ P IT V++N+ LLTPLNLEIDPNAQ VK++EKEQIK LNN+FA+FIDKVRFLEQQNK
Sbjct: 124 PAAPSITAVTVNQSLLTPLNLEIDPNAQRVKRDEKEQIKTLNNKFASFIDKVRFLEQQNK 183

Query: 430 LLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKK 609
           LLETK  F Q ++C +SNLEPLF  YI  LRR+ ++V +D  RL +E NH+Q+VLEG+KK
Sbjct: 184 LLETKWNFLQEQKCAKSNLEPLFENYITNLRRQLDVVNSDQARLEAERNHMQDVLEGFKK 243

Query: 610 KYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHA 789
           KYEEEV LRA+AENEFVALKKDVD A++ K+DLEANV+ L QEIDF          +L +
Sbjct: 244 KYEEEVGLRASAENEFVALKKDVDTAFLSKADLEANVDTLIQEIDFLKTLYEAEIQLLQS 303

Query: 790 HISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
           HIS+TSVIVKMDNSRDL+++ I+A+ +AQY++IA RSRA+AE+WY++  EE+R
Sbjct: 304 HISETSVIVKMDNSRDLNVDGIIADIKAQYEEIARRSRADAEAWYQTKYEEMR 356


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 23,162,417
Number of extensions: 476153
Number of successful extensions: 2570
Number of sequences better than 1.0e-05: 98
Number of HSP's gapped: 2427
Number of HSP's successfully gapped: 99
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012160
         (974 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_850166.1| PREDICTED: similar to keratin, hair, basic, 3 [...   461   e-130
Alignment   gi|XP_543657.2| PREDICTED: similar to type II keratin Kb21 isof...   455   e-128
Alignment   gi|XP_543656.2| PREDICTED: similar to type II keratin Kb26 [Can...   451   e-127
Alignment   gi|XP_543653.2| PREDICTED: similar to keratin, hair, basic, 5 [...   429   e-120
Alignment   gi|XP_860589.1| PREDICTED: similar to type II keratin Kb21 isof...   400   e-112
Alignment   gi|XP_543654.2| PREDICTED: similar to keratin, hair, basic, 5 [...   378   e-105
Alignment   gi|XP_543652.1| PREDICTED: similar to Keratin, type II cuticula...   305   6e-83
Alignment   gi|XP_860523.1| PREDICTED: similar to Keratin, type II cuticula...   303   2e-82
Alignment   gi|XP_543651.2| PREDICTED: similar to keratin complex 2, basic,...   288   4e-78
Alignment   gi|XP_543650.2| PREDICTED: similar to cytokeratin type II [Cani...   254   1e-67

>ref|XP_850166.1| PREDICTED: similar to keratin, hair, basic, 3 [Canis familiaris].
          Length = 578

 Score =  461 bits (1187), Expect = e-130
 Identities = 236/312 (75%), Positives = 254/312 (81%)
 Frame = +1

Query: 16   TMSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXX 195
            +M+C  S +G  FG R+ SCASACGPRPGRCCI+AAPYRGISCYRGLT            
Sbjct: 91   SMTCGFSNVGCGFGPRTLSCASACGPRPGRCCITAAPYRGISCYRGLTGGFGSRSVCGAF 150

Query: 196  XXXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLN 375
                              PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN
Sbjct: 151  RAGSCGRSFGYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLN 210

Query: 376  NRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSG 555
            +RFAAFIDKVRFLEQQNKLLETK QFYQNR+CCESNLEPLF GYIETLRREAE VEADSG
Sbjct: 211  SRFAAFIDKVRFLEQQNKLLETKWQFYQNRKCCESNLEPLFEGYIETLRREAECVEADSG 270

Query: 556  RLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQ 735
            RLASELNHVQEV+EGYKKKYEEEVALRATAENEFVALKK+VDCAY++KSDLEAN EALT+
Sbjct: 271  RLASELNHVQEVMEGYKKKYEEEVALRATAENEFVALKKEVDCAYLRKSDLEANAEALTE 330

Query: 736  EIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAE 915
            EIDF          VLHAHISDTSVIVKMDNSRDL+M+ IVAE +AQYDDIASRSRAEAE
Sbjct: 331  EIDFLRRLYEEEIRVLHAHISDTSVIVKMDNSRDLNMDCIVAEIKAQYDDIASRSRAEAE 390

Query: 916  SWYRSNGEEIRA 951
            SWYRS  EE++A
Sbjct: 391  SWYRSKCEEMKA 402


>ref|XP_543657.2| PREDICTED: similar to type II keratin Kb21 isoform 1 [Canis
           familiaris].
          Length = 513

 Score =  455 bits (1171), Expect = e-128
 Identities = 233/303 (76%), Positives = 249/303 (82%)
 Frame = +1

Query: 43  GAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXX 222
           G+ F  R+FSCASACGPRPGRCCI+AAPYRG+SCYRGLT                     
Sbjct: 4   GSGFCGRAFSCASACGPRPGRCCITAAPYRGVSCYRGLTGGFGSRSVCGAFRAGSCGRSF 63

Query: 223 XXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDK 402
                    PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDK
Sbjct: 64  GYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDK 123

Query: 403 VRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHV 582
           VRFLEQQNKLLETK QFYQNR+CCESNLEPLF GYIETLRREAE VEADSGRLASELNHV
Sbjct: 124 VRFLEQQNKLLETKWQFYQNRKCCESNLEPLFEGYIETLRREAECVEADSGRLASELNHV 183

Query: 583 QEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXX 762
           QEVLEGYKKKYEEEV+LRATAENEFVALKKDVDCAY++KSDLEAN EALT+EIDF     
Sbjct: 184 QEVLEGYKKKYEEEVSLRATAENEFVALKKDVDCAYLRKSDLEANAEALTEEIDFLRRLY 243

Query: 763 XXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEE 942
                VLHAHISDTSVIVKMDNSRDL+M+ IVAE +AQYDDIASRSRAEAESWYRS  EE
Sbjct: 244 EEEIRVLHAHISDTSVIVKMDNSRDLNMDCIVAEIKAQYDDIASRSRAEAESWYRSKCEE 303

Query: 943 IRA 951
           ++A
Sbjct: 304 MKA 306


>ref|XP_543656.2| PREDICTED: similar to type II keratin Kb26 [Canis familiaris].
          Length = 485

 Score =  451 bits (1161), Expect = e-127
 Identities = 231/303 (76%), Positives = 247/303 (81%)
 Frame = +1

Query: 43  GAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXX 222
           G+  G  +FSCASACGPRPGRCCI+AAPYRG+SCYRGLT                     
Sbjct: 4   GSYCGGSAFSCASACGPRPGRCCITAAPYRGVSCYRGLTGGFGSRSVCGAFRAGSCGRSF 63

Query: 223 XXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDK 402
                    PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDK
Sbjct: 64  GYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDK 123

Query: 403 VRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHV 582
           VRFLEQQNKLLETK QFYQNR+CCESNLEPLF GYIETLRREAE VEADSGRLASELNHV
Sbjct: 124 VRFLEQQNKLLETKWQFYQNRKCCESNLEPLFEGYIETLRREAECVEADSGRLASELNHV 183

Query: 583 QEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXX 762
           QEVLEGYKKKYEEEV+LRATAENEFVALKKDVDCAY++KSDLEAN EALT+EIDF     
Sbjct: 184 QEVLEGYKKKYEEEVSLRATAENEFVALKKDVDCAYLRKSDLEANAEALTEEIDFLRRLY 243

Query: 763 XXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEE 942
                VLHAHISDTSVIVKMDNSRDL+M+ IVAE +AQYDDI SRSRAEAESWYRS  EE
Sbjct: 244 EEEIRVLHAHISDTSVIVKMDNSRDLNMDCIVAEIKAQYDDIVSRSRAEAESWYRSKCEE 303

Query: 943 IRA 951
           ++A
Sbjct: 304 MKA 306


>ref|XP_543653.2| PREDICTED: similar to keratin, hair, basic, 5 [Canis familiaris].
          Length = 507

 Score =  429 bits (1103), Expect = e-120
 Identities = 230/323 (71%), Positives = 247/323 (76%), Gaps = 12/323 (3%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGV-RSFSCASACGPRPG-RCCISAAPYRGISCYRGLTXXXXXXXXXXX 192
           MSC S R+ +  GV R+FS  SA  P+ G RCCISAAPYRG+SCYRGLT           
Sbjct: 1   MSCRSYRISSGCGVTRTFSSCSAVAPKTGNRCCISAAPYRGVSCYRGLTGFGSRSLSNLG 60

Query: 193 XXXXXXXXXXXXXXXXXXX----------PSPPCITTVSINECLLTPLNLEIDPNAQCVK 342
                                        PSPPCITTVS+NE LLTPLNLEIDPNAQCVK
Sbjct: 61  SCGPRMAVGGFRAGSCGRSFGYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVK 120

Query: 343 QEEKEQIKFLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLR 522
            EEKEQIK LNNRFAAFIDKVRFLEQQNKLLETK QFYQN++CCESNLEPLFNGYIETLR
Sbjct: 121 HEEKEQIKCLNNRFAAFIDKVRFLEQQNKLLETKWQFYQNQRCCESNLEPLFNGYIETLR 180

Query: 523 REAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKS 702
           REAE VEAD GRLASELNHVQEVLEGYKKKYEEEVALRATAENEFV LKKDVDCAY++KS
Sbjct: 181 REAECVEADGGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVVLKKDVDCAYLRKS 240

Query: 703 DLEANVEALTQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYD 882
           DLEANVEAL +E  F          VLHAHISDTSVIVKMDNSRDL+M+ +VAE +AQYD
Sbjct: 241 DLEANVEALVEESSFLKRLYDEELQVLHAHISDTSVIVKMDNSRDLNMDCVVAEIKAQYD 300

Query: 883 DIASRSRAEAESWYRSNGEEIRA 951
           DIASRSRAEAESWYRS  EE++A
Sbjct: 301 DIASRSRAEAESWYRSKCEEMKA 323


>ref|XP_860589.1| PREDICTED: similar to type II keratin Kb21 isoform 3 [Canis
           familiaris].
          Length = 481

 Score =  400 bits (1029), Expect = e-112
 Identities = 212/303 (69%), Positives = 227/303 (74%)
 Frame = +1

Query: 43  GAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXX 222
           G+ F  R+FSCASACGPRPGRCCI+AAPYRG+SCYRGLT                     
Sbjct: 4   GSGFCGRAFSCASACGPRPGRCCITAAPYRGVSCYRGLTGGFGSRSVCGAFRAGSCGRSF 63

Query: 223 XXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDK 402
                    PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDK
Sbjct: 64  GYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDK 123

Query: 403 VRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHV 582
           VRFLEQQNKLLETK QFYQNR+CCESNLEPLF GYIETLRREAE VEADSGRLASELNHV
Sbjct: 124 VRFLEQQNKLLETKWQFYQNRKCCESNLEPLFEGYIETLRREAECVEADSGRLASELNHV 183

Query: 583 QEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXX 762
           QEVLEGYKKKYEEEV+LRATAENEFVALKK++                            
Sbjct: 184 QEVLEGYKKKYEEEVSLRATAENEFVALKKEI---------------------------- 215

Query: 763 XXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEE 942
                VLHAHISDTSVIVKMDNSRDL+M+ IVAE +AQYDDIASRSRAEAESWYRS  EE
Sbjct: 216 ----RVLHAHISDTSVIVKMDNSRDLNMDCIVAEIKAQYDDIASRSRAEAESWYRSKCEE 271

Query: 943 IRA 951
           ++A
Sbjct: 272 MKA 274


>ref|XP_543654.2| PREDICTED: similar to keratin, hair, basic, 5 [Canis familiaris].
          Length = 484

 Score =  378 bits (971), Expect = e-105
 Identities = 203/314 (64%), Positives = 232/314 (73%), Gaps = 3/314 (0%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRP-GRCCISA--APYRGISCYRGLTXXXXXXXXXX 189
           M+  S RLG+  GVR+FS  SA  P+P  R C  A  A  RG     G            
Sbjct: 1   MTTRSYRLGSGCGVRNFSACSAVLPKPTARSCSGAVVASCRGGPGGPGYRRFGGFSSRSL 60

Query: 190 XXXXXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKF 369
                               PSPPCIT+VS+NE LLTPLNLEIDPNAQCVK +EKEQIK 
Sbjct: 61  CGWPVRGRSSFGYRVGGLCGPSPPCITSVSVNESLLTPLNLEIDPNAQCVKHQEKEQIKC 120

Query: 370 LNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEAD 549
           LNN+FAAFIDKVRFLEQQNKLLETK QFYQNR+CCESNLEPLF GY+ETLRREAE VEAD
Sbjct: 121 LNNKFAAFIDKVRFLEQQNKLLETKWQFYQNRKCCESNLEPLFQGYLETLRREAECVEAD 180

Query: 550 SGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEAL 729
           SGRLASELNHVQEVLEGYKKKYEEEVALR TAENEFV LKKD+D AY++K+DLEANVE L
Sbjct: 181 SGRLASELNHVQEVLEGYKKKYEEEVALRTTAENEFVVLKKDIDSAYLRKADLEANVEVL 240

Query: 730 TQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAE 909
            +E  F          +LH+ ISDTSV+VKMDNSR+L+M+++VAE +AQYDD+ASRSRAE
Sbjct: 241 REETAFLQALYEEEIYLLHSQISDTSVVVKMDNSRELNMDSVVAEIKAQYDDVASRSRAE 300

Query: 910 AESWYRSNGEEIRA 951
           AESWY++  EE++A
Sbjct: 301 AESWYQTKCEEMKA 314


>ref|XP_543652.1| PREDICTED: similar to Keratin, type II cuticular Hb4 (Hair keratin,
           type II Hb4) isoform 1 [Canis familiaris].
          Length = 586

 Score =  305 bits (780), Expect = 6e-83
 Identities = 171/327 (52%), Positives = 215/327 (65%), Gaps = 11/327 (3%)
 Frame = +1

Query: 1   RRRRRTMSCLSSR----LGAPFGVRSF----SCA---SACGPRPGRCCISAAPYRGISCY 147
           R R  ++SC S      LG+ FG RS     SC+   +A GPRP RC +      G    
Sbjct: 30  RFRTSSVSCRSGPSFRGLGS-FGSRSVIAFGSCSPRIAAVGPRPIRCGVGFGAGSGA--- 85

Query: 148 RGLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPN 327
            G+                               P+ P IT V++N+ LLTPLNLEIDPN
Sbjct: 86  -GMGFGASSCVGLGFGAGSGLGYGFGYRVGGGGIPAAPSITAVTVNQSLLTPLNLEIDPN 144

Query: 328 AQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGY 507
           AQ VK++EKEQIK LNN+FA+FIDKVRFLEQQNKLLETK  F Q ++C  SNLEPLF  Y
Sbjct: 145 AQRVKKDEKEQIKTLNNKFASFIDKVRFLEQQNKLLETKWNFLQEQKCARSNLEPLFENY 204

Query: 508 IETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCA 687
           I  LRR+ ++  +D  R  +E NH+Q+VLEG+KKKYEEEV  RA AENEFVALKKDVD A
Sbjct: 205 ITNLRRQLDVANSDRARFEAERNHMQDVLEGFKKKYEEEVGFRANAENEFVALKKDVDTA 264

Query: 688 YVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAED 867
           ++ KSDLEANV+ LTQEIDF          +L +HIS+TSVIVKMDNSRDL+++ I+ E 
Sbjct: 265 FLNKSDLEANVDTLTQEIDFLKTLYMAEIQLLQSHISETSVIVKMDNSRDLNVDGIIDEV 324

Query: 868 QAQYDDIASRSRAEAESWYRSNGEEIR 948
           +AQY+++A RSRA+AE+WY++  EE+R
Sbjct: 325 KAQYEEVARRSRADAEAWYQTKYEEMR 351


>ref|XP_860523.1| PREDICTED: similar to Keratin, type II cuticular Hb4 (Hair keratin,
           type II Hb4) isoform 2 [Canis familiaris].
          Length = 554

 Score =  303 bits (776), Expect = 2e-82
 Identities = 169/320 (52%), Positives = 211/320 (65%), Gaps = 4/320 (1%)
 Frame = +1

Query: 1   RRRRRTMSCLSSR----LGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXX 168
           R R  ++SC S      LG+ FG RS     +C PR     I+A   R I C  G     
Sbjct: 30  RFRTSSVSCRSGPSFRGLGS-FGSRSVIAFGSCSPR-----IAAVGPRPIRCGVGF---- 79

Query: 169 XXXXXXXXXXXXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQE 348
                                      P+ P IT V++N+ LLTPLNLEIDPNAQ VK++
Sbjct: 80  --------------------GAGSGGIPAAPSITAVTVNQSLLTPLNLEIDPNAQRVKKD 119

Query: 349 EKEQIKFLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRRE 528
           EKEQIK LNN+FA+FIDKVRFLEQQNKLLETK  F Q ++C  SNLEPLF  YI  LRR+
Sbjct: 120 EKEQIKTLNNKFASFIDKVRFLEQQNKLLETKWNFLQEQKCARSNLEPLFENYITNLRRQ 179

Query: 529 AELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDL 708
            ++  +D  R  +E NH+Q+VLEG+KKKYEEEV  RA AENEFVALKKDVD A++ KSDL
Sbjct: 180 LDVANSDRARFEAERNHMQDVLEGFKKKYEEEVGFRANAENEFVALKKDVDTAFLNKSDL 239

Query: 709 EANVEALTQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDI 888
           EANV+ LTQEIDF          +L +HIS+TSVIVKMDNSRDL+++ I+ E +AQY+++
Sbjct: 240 EANVDTLTQEIDFLKTLYMAEIQLLQSHISETSVIVKMDNSRDLNVDGIIDEVKAQYEEV 299

Query: 889 ASRSRAEAESWYRSNGEEIR 948
           A RSRA+AE+WY++  EE+R
Sbjct: 300 ARRSRADAEAWYQTKYEEMR 319


>ref|XP_543651.2| PREDICTED: similar to keratin complex 2, basic, gene 20 [Canis
           familiaris].
          Length = 518

 Score =  288 bits (738), Expect = 4e-78
 Identities = 166/319 (52%), Positives = 204/319 (63%), Gaps = 9/319 (2%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRP-GRCCISAAP--------YRGISCYRGLTXXXX 171
           MSC S +LG+  G +SFS  SA  PR      +S  P         R + C  G      
Sbjct: 1   MSCRSFQLGSRCGGQSFSSCSAVLPRMVAHHAVSKGPCRPGGGGGLRALGCL-GSRSLCN 59

Query: 172 XXXXXXXXXXXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEE 351
                                     PS  CI  V+INE LL PL LEIDP  Q VK++E
Sbjct: 60  VGFGRPRVASRCGLPSFGYRVGAVSGPSA-CIAPVTINESLLVPLELEIDPAVQRVKRDE 118

Query: 352 KEQIKFLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREA 531
           KEQIK LNNRFA+FI+KVRFLEQ+NKLLETK  F Q ++CC+SN+EP+F  YI  LRR+ 
Sbjct: 119 KEQIKCLNNRFASFINKVRFLEQKNKLLETKWNFMQQQRCCQSNIEPIFEAYICALRRQL 178

Query: 532 ELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLE 711
           + V  D  RL SEL  +Q+ LE YKKKYEEE++LR  AENEFVALKK+VD A++ K+DLE
Sbjct: 179 DCVAGDRARLESELCSLQDALESYKKKYEEELSLRPCAENEFVALKKEVDTAFLIKADLE 238

Query: 712 ANVEALTQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIA 891
            N EAL QEIDF          +L + IS+TSVIVKMDNSR+LD++ I+AE +AQYDDIA
Sbjct: 239 TNAEALVQEIDFLKGLYEEEMCLLQSQISETSVIVKMDNSRELDVDGIIAEIKAQYDDIA 298

Query: 892 SRSRAEAESWYRSNGEEIR 948
           SRS+AEAE+WY+S  EE+R
Sbjct: 299 SRSKAEAEAWYQSRYEELR 317


>ref|XP_543650.2| PREDICTED: similar to cytokeratin type II [Canis familiaris].
          Length = 975

 Score =  254 bits (648), Expect = 1e-67
 Identities = 127/228 (55%), Positives = 170/228 (74%)
 Frame = +1

Query: 265  ITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNKLLETK 444
            I  V++N+ LLTPL+LEIDP+ Q V++EEKEQIK LNN+FA+FIDKVRFLEQQNK+LETK
Sbjct: 559  IQEVTVNQSLLTPLHLEIDPSLQRVRKEEKEQIKTLNNKFASFIDKVRFLEQQNKVLETK 618

Query: 445  LQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEE 624
                Q  +   +N+EP+F  YI  LRR+ E +  +  RL SEL ++Q+V+E +K KYEEE
Sbjct: 619  WSLLQEHKTTRANIEPMFEAYISNLRRQLECLGGERTRLESELKNMQDVVEDFKNKYEEE 678

Query: 625  VALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHAHISDT 804
            +  R  AENEFV LKKDVD AY+ K +LEA V+AL  EI+F           L A IS+T
Sbjct: 679  INRRTVAENEFVVLKKDVDAAYMNKVELEAKVDALMDEINFLRAFYDAELAQLQAQISET 738

Query: 805  SVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
            SV++ MDN+R LD+++I++E +AQY+DIA+RSRAEAESWY++  EE++
Sbjct: 739  SVVLSMDNNRKLDLDSIISEVKAQYEDIANRSRAEAESWYQTKYEELQ 786



 Score =  248 bits (634), Expect = 5e-66
 Identities = 126/233 (54%), Positives = 172/233 (73%), Gaps = 2/233 (0%)
 Frame = +1

Query: 256 PPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNKLL 435
           P  I  V++N+ LLTPLNL+IDP  Q V++EE+EQIK LNN+FA+FIDKVRFLEQQNK+L
Sbjct: 118 PGGIQEVTVNQSLLTPLNLQIDPAIQRVRKEEREQIKTLNNKFASFIDKVRFLEQQNKVL 177

Query: 436 ETKLQFYQNR--QCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKK 609
           ETK +  Q +  +    NLEP F+ YI  LRR+ + V  + GRL +EL ++Q+V+E +K 
Sbjct: 178 ETKWELLQEQGSKTVRQNLEPFFDTYINDLRRQLDSVTTERGRLDAELRNMQDVVEDFKV 237

Query: 610 KYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHA 789
           +YE+E+  R  AENEFVALKKDVD AY+ K +LEA V +LT EI+F           +  
Sbjct: 238 RYEDEINKRTAAENEFVALKKDVDSAYMNKVELEAKVNSLTDEINFLRMLFEAELSQMQT 297

Query: 790 HISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
            +SDTSV++ MDN+R LD+++I+AE +AQY+DIA+RSRAEAESWY++  EE++
Sbjct: 298 QVSDTSVVLSMDNNRSLDLDSIIAEVKAQYEDIANRSRAEAESWYQTKYEELQ 350


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 24,303,868
Number of extensions: 496407
Number of successful extensions: 2936
Number of sequences better than 1.0e-05: 103
Number of HSP's gapped: 2754
Number of HSP's successfully gapped: 114
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012160
         (974 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003126205.1| PREDICTED: keratin, type II cuticular Hb3-li...   480   e-136
Alignment   gi|XP_003126201.1| PREDICTED: keratin, type II cuticular Hb1-li...   478   e-135
Alignment   gi|XP_003126204.1| PREDICTED: keratin, type II cuticular Hb1-li...   473   e-134
Alignment   gi|XP_003355443.1| PREDICTED: keratin, type II microfibrillar, ...   463   e-131
Alignment   gi|XP_003126207.1| PREDICTED: keratin, type II cuticular Hb5 [S...   431   e-121
Alignment   gi|XP_003355442.1| PREDICTED: keratin, type II microfibrillar, ...   412   e-115
Alignment   gi|XP_003126215.2| PREDICTED: keratin, type II cuticular Hb5-li...   340   9e-94
Alignment   gi|XP_003126206.1| PREDICTED: keratin, type II cuticular Hb2 [S...   290   8e-79
Alignment   gi|XP_003126221.1| PREDICTED: keratin, type II cytoskeletal 5 [...   250   7e-67
Alignment   gi|XP_003355441.1| PREDICTED: keratin, type II cytoskeletal 75-...   249   2e-66

>ref|XP_003126205.1| PREDICTED: keratin, type II cuticular Hb3-like [Sus scrofa].
          Length = 493

 Score =  480 bits (1235), Expect = e-136
 Identities = 247/311 (79%), Positives = 257/311 (82%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXX 198
           M+C  S + + F  R+FSCASACGPRPGRCCISAAPYRGISCYRGLT             
Sbjct: 1   MTCGFSSMSSGFSGRAFSCASACGPRPGRCCISAAPYRGISCYRGLTGGFGSRSVGGGFR 60

Query: 199 XXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 378
                            PSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIK LNN
Sbjct: 61  AGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKCLNN 120

Query: 379 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 558
           RFAAFIDKVRFLEQQ KLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR
Sbjct: 121 RFAAFIDKVRFLEQQTKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 180

Query: 559 LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQE 738
           LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAY++KSDLEANVEAL QE
Sbjct: 181 LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYIRKSDLEANVEALVQE 240

Query: 739 IDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAES 918
           IDF          VL AHISDTSVIVK+DNSRDL+MNNIVAE +AQYDDIASRSRAEAES
Sbjct: 241 IDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMNNIVAEIKAQYDDIASRSRAEAES 300

Query: 919 WYRSNGEEIRA 951
           WYRS  EEI+A
Sbjct: 301 WYRSKCEEIKA 311


>ref|XP_003126201.1| PREDICTED: keratin, type II cuticular Hb1-like isoform 1 [Sus
           scrofa].
          Length = 497

 Score =  478 bits (1229), Expect = e-135
 Identities = 248/311 (79%), Positives = 256/311 (82%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXX 198
           M+C S      F  R+FSCASACGPRPGRCCISAAPYRGISCYRGLT             
Sbjct: 1   MTCRSG-----FSSRTFSCASACGPRPGRCCISAAPYRGISCYRGLTGGFGSRSVGGGFR 55

Query: 199 XXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 378
                            PSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN
Sbjct: 56  AGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 115

Query: 379 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 558
           RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR
Sbjct: 116 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 175

Query: 559 LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQE 738
           LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYV+KSDLEANVEAL QE
Sbjct: 176 LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVRKSDLEANVEALVQE 235

Query: 739 IDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAES 918
           IDF          VL AHISDTSVIVK+DNSRDL+M+NIVAE +A YDDIASRSRAEAES
Sbjct: 236 IDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMDNIVAEIKAHYDDIASRSRAEAES 295

Query: 919 WYRSNGEEIRA 951
           WYRS  EEI+A
Sbjct: 296 WYRSKCEEIKA 306


>ref|XP_003126204.1| PREDICTED: keratin, type II cuticular Hb1-like isoform 4 [Sus
           scrofa].
          Length = 498

 Score =  473 bits (1217), Expect = e-134
 Identities = 248/312 (79%), Positives = 256/312 (82%), Gaps = 1/312 (0%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXX 198
           M+C S      F  R+FSCASACGPRPGRCCISAAPYRGISCYRGLT             
Sbjct: 1   MTCRSG-----FSSRTFSCASACGPRPGRCCISAAPYRGISCYRGLTGGFGSRSVGGGFR 55

Query: 199 XXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 378
                            PSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN
Sbjct: 56  AGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 115

Query: 379 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 558
           RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR
Sbjct: 116 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 175

Query: 559 LASELNHVQEVLEGYKKK-YEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQ 735
           LASELNHVQEVLEGYKKK YEEEVALRATAENEFVALKKDVDCAYV+KSDLEANVEAL Q
Sbjct: 176 LASELNHVQEVLEGYKKKRYEEEVALRATAENEFVALKKDVDCAYVRKSDLEANVEALVQ 235

Query: 736 EIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAE 915
           EIDF          VL AHISDTSVIVK+DNSRDL+M+NIVAE +A YDDIASRSRAEAE
Sbjct: 236 EIDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMDNIVAEIKAHYDDIASRSRAEAE 295

Query: 916 SWYRSNGEEIRA 951
           SWYRS  EEI+A
Sbjct: 296 SWYRSKCEEIKA 307


>ref|XP_003355443.1| PREDICTED: keratin, type II microfibrillar, component 7C-like,
           partial [Sus scrofa].
          Length = 284

 Score =  463 bits (1192), Expect = e-131
 Identities = 240/283 (84%), Positives = 240/283 (84%), Gaps = 1/283 (0%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXX 198
           MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLT             
Sbjct: 1   MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTGGFSSRSVGGGFR 60

Query: 199 XXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 378
                            PSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN
Sbjct: 61  AGSGGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 120

Query: 379 RFAAFIDKV-RFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSG 555
           RFAAFIDKV   LEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSG
Sbjct: 121 RFAAFIDKVGALLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSG 180

Query: 556 RLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQ 735
           RLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQ
Sbjct: 181 RLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQ 240

Query: 736 EIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAE 864
           EIDF          VLHAHISDTSVIVKMDNSRDLDMNNIVAE
Sbjct: 241 EIDFLRRLYEEELRVLHAHISDTSVIVKMDNSRDLDMNNIVAE 283


>ref|XP_003126207.1| PREDICTED: keratin, type II cuticular Hb5 [Sus scrofa].
          Length = 507

 Score =  431 bits (1107), Expect = e-121
 Identities = 230/323 (71%), Positives = 248/323 (76%), Gaps = 12/323 (3%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGV-RSFSCASACGPRPG-RCCISAAPYRGISCYRGLTXXXXXXXXXXX 192
           MSC S R+    GV R+FS  SA  P+ G RCCISAAPYRG+SCYRGLT           
Sbjct: 1   MSCRSYRISQGCGVTRTFSSCSAVAPKTGSRCCISAAPYRGVSCYRGLTGFGSRSVSALG 60

Query: 193 XXXXXXXXXXXXXXXXXXX----------PSPPCITTVSINECLLTPLNLEIDPNAQCVK 342
                                        PSPPCITTVS+NE LLTPLNLEIDPNAQCVK
Sbjct: 61  SSGPRIAVGGFRAGSGGRSFGYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVK 120

Query: 343 QEEKEQIKFLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLR 522
            EEKEQIK LN+RFAAFIDKVRFLEQQNKLLETK QFYQN++CCESNLEPLFNGYIETLR
Sbjct: 121 HEEKEQIKNLNSRFAAFIDKVRFLEQQNKLLETKWQFYQNQRCCESNLEPLFNGYIETLR 180

Query: 523 REAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKS 702
           REAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFV LKKDVDCAY++KS
Sbjct: 181 REAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVVLKKDVDCAYLRKS 240

Query: 703 DLEANVEALTQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYD 882
           DLEANVEAL +E  F          +LHAHISDTSVIVKMDNSRDL+MN +VAE +AQYD
Sbjct: 241 DLEANVEALVEESSFLKRLYDEELQILHAHISDTSVIVKMDNSRDLNMNCVVAEIKAQYD 300

Query: 883 DIASRSRAEAESWYRSNGEEIRA 951
           D+ASRSRAEAESWYRS  EE++A
Sbjct: 301 DVASRSRAEAESWYRSKCEEMKA 323


>ref|XP_003355442.1| PREDICTED: keratin, type II microfibrillar, component 7C-like [Sus
           scrofa].
          Length = 477

 Score =  412 bits (1060), Expect = e-115
 Identities = 216/315 (68%), Positives = 240/315 (76%), Gaps = 5/315 (1%)
 Frame = +1

Query: 22  SCLSSRLG-----APFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXX 186
           SCLSSR G     +    + FSC SA GPRPGRCCI+AAPYRG+SCYRGLT         
Sbjct: 6   SCLSSRSGVCKSSSCVTTQRFSCTSASGPRPGRCCITAAPYRGVSCYRGLTGGFGSRSVS 65

Query: 187 XXXXXXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIK 366
                                PSPPCITTVSINE LL PLNLEID NAQ VKQEEKEQIK
Sbjct: 66  GGFGAGSSGRSFGYRSGGVVRPSPPCITTVSINESLLAPLNLEIDHNAQSVKQEEKEQIK 125

Query: 367 FLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEA 546
            LN+RFAAFIDKVRFLEQQNKLLETKLQF+QNR+CCESNLEPLFNGYIETLRREAE VEA
Sbjct: 126 ILNSRFAAFIDKVRFLEQQNKLLETKLQFFQNRKCCESNLEPLFNGYIETLRREAERVEA 185

Query: 547 DSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEA 726
           D GRLASELNHV EVLEGYKKKYEEEVALR TAENEFV +K++V+   VQK+DL+AN ++
Sbjct: 186 DRGRLASELNHVHEVLEGYKKKYEEEVALRTTAENEFVRIKQEVNSLSVQKADLKANAQS 245

Query: 727 LTQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRA 906
           L +E+ F          VL AHISDT VIVKMDNSRDL+M++I+AE +A YDDIASRSRA
Sbjct: 246 LAEEVGFLKTLYEEEIRVLQAHISDTLVIVKMDNSRDLNMDSIIAEIKAHYDDIASRSRA 305

Query: 907 EAESWYRSNGEEIRA 951
           EAESWYR+  EEI+A
Sbjct: 306 EAESWYRTKYEEIKA 320


>ref|XP_003126215.2| PREDICTED: keratin, type II cuticular Hb5-like [Sus scrofa].
          Length = 492

 Score =  340 bits (871), Expect = 9e-94
 Identities = 170/234 (72%), Positives = 200/234 (85%)
 Frame = +1

Query: 250 PSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNK 429
           PSPP ITTVSI E LLTPLNLEIDP AQCVKQEEKEQ K LNNRFAAF D+VRFLEQQNK
Sbjct: 89  PSPPYITTVSIIEGLLTPLNLEIDPKAQCVKQEEKEQTKCLNNRFAAFTDEVRFLEQQNK 148

Query: 430 LLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKK 609
           LLETK QFYQNR+CC+S+LE LFNGYIE LRREAE VEADSGRLASELNHVQEVLEGY+K
Sbjct: 149 LLETKWQFYQNRKCCKSSLELLFNGYIEMLRREAECVEADSGRLASELNHVQEVLEGYRK 208

Query: 610 KYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHA 789
           KYEEEVAL+A AENEFV LKKD+DCAY++K+DLEANVEAL +E+ F          +L +
Sbjct: 209 KYEEEVALKAAAENEFVVLKKDIDCAYLRKADLEANVEALKEEMGFLRSLHDEEIYLLQS 268

Query: 790 HISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIRA 951
            ISDTSV+VKMDNSR+L  +++VA+ + QYD++ASR++AEA+SWY++  E+ +A
Sbjct: 269 QISDTSVVVKMDNSRELSRDSVVADIKGQYDNVASRNQAEAKSWYQTKCEQFKA 322


>ref|XP_003126206.1| PREDICTED: keratin, type II cuticular Hb2 [Sus scrofa].
          Length = 514

 Score =  290 bits (742), Expect = 8e-79
 Identities = 166/319 (52%), Positives = 205/319 (64%), Gaps = 9/319 (2%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPR--------PGRCCISAAP-YRGISCYRGLTXXXX 171
           MSC S + G+  G RSFS  SA  PR         G C    +   R + C  G      
Sbjct: 1   MSCRSFQQGSRCGSRSFSSCSAVLPRMVTHYAVSKGLCRPGGSGGLRALGCL-GSRSLCN 59

Query: 172 XXXXXXXXXXXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEE 351
                                     PS  CIT V+INE LL PL LEIDP+ Q VK++E
Sbjct: 60  VGFGRPRVASRCGLPSFGYRVGTACGPSA-CITPVTINESLLVPLELEIDPSVQRVKRDE 118

Query: 352 KEQIKFLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREA 531
           KEQIK LNNRFA+FI+KVRFLEQ+NKLLETK  F Q ++CC++N+EP+F  YI  LRR+ 
Sbjct: 119 KEQIKCLNNRFASFINKVRFLEQKNKLLETKWNFMQQQRCCQNNIEPIFEAYICALRRQL 178

Query: 532 ELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLE 711
           + V  D  RL SEL  VQE LE YKKKYEEE++LR  AENEFVALKKDVD A+++K+DLE
Sbjct: 179 DCVAGDRARLESELCSVQETLEAYKKKYEEELSLRPCAENEFVALKKDVDTAFLKKADLE 238

Query: 712 ANVEALTQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIA 891
            N EAL QE+DF          +L + IS+TSVIVKMDNSR+LD++ I+AE +AQYD+IA
Sbjct: 239 TNTEALIQELDFLRSLYDEEICLLQSQISETSVIVKMDNSRELDVDGIIAEIKAQYDEIA 298

Query: 892 SRSRAEAESWYRSNGEEIR 948
           SRS+AEAE+WY+   EE+R
Sbjct: 299 SRSKAEAEAWYQGRYEELR 317


>ref|XP_003126221.1| PREDICTED: keratin, type II cytoskeletal 5 [Sus scrofa].
          Length = 602

 Score =  250 bits (639), Expect = 7e-67
 Identities = 126/233 (54%), Positives = 171/233 (73%), Gaps = 2/233 (0%)
 Frame = +1

Query: 256 PPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNKLL 435
           P  I  V++N+ LLTPLNL+IDP  Q V+ EE+EQIK LNN+FA+FIDKVRFLEQQNK+L
Sbjct: 142 PGGIQEVTVNQSLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVL 201

Query: 436 ETKLQFYQNR--QCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKK 609
           +TK    Q +  +    NLEPLF  YI  LRR+ + +  + GRL SEL ++Q+++E +K 
Sbjct: 202 DTKWTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSILGERGRLDSELRNMQDLVEDFKN 261

Query: 610 KYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHA 789
           KYE+E+  R TAENEFV LKKDVD AY+ K +LEA V+AL  EI+F           +  
Sbjct: 262 KYEDEINKRTTAENEFVMLKKDVDAAYMNKVELEAKVDALMDEINFTKMFFEAELSQMQT 321

Query: 790 HISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
           H+SDTSV++ MDN+R+LD+++I+AE +AQY+DIA+RSR EAESWY++  EE++
Sbjct: 322 HVSDTSVVLSMDNNRNLDLDSIIAEVKAQYEDIANRSRTEAESWYQTKYEELQ 374


>ref|XP_003355441.1| PREDICTED: keratin, type II cytoskeletal 75-like [Sus scrofa].
          Length = 526

 Score =  249 bits (636), Expect = 2e-66
 Identities = 126/228 (55%), Positives = 167/228 (73%)
 Frame = +1

Query: 265 ITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNKLLETK 444
           I  V++N+ LLTPL+LEIDP+ Q V++EE+EQIK LNN+FA+FIDKVRFLEQQNK+LETK
Sbjct: 115 IQEVTVNQSLLTPLHLEIDPSLQRVRKEEREQIKTLNNKFASFIDKVRFLEQQNKVLETK 174

Query: 445 LQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEE 624
               Q  +   +N+EP+F  YI  LRR+ + +  +  RL  EL  +Q+V+E +K KYEEE
Sbjct: 175 WSLLQEHKTTRANIEPMFEAYISNLRRQLDSLGGERSRLEVELKSMQDVVEDFKNKYEEE 234

Query: 625 VALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHAHISDT 804
           +  R  AENEFV LKKDVD AY+ K +LEA VEAL  EI+F           L A IS+T
Sbjct: 235 INRRTVAENEFVVLKKDVDAAYMSKVELEAKVEALMDEINFLRAFYDAELAQLQAQISET 294

Query: 805 SVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
           SVI+ MDN+R LD+++I++E +AQY+DIA+RSRAEAESWY+   EE++
Sbjct: 295 SVILSMDNNRKLDLDSIISEVKAQYEDIANRSRAEAESWYQIKYEELQ 342


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,972,755
Number of extensions: 308791
Number of successful extensions: 1647
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 1561
Number of HSP's successfully gapped: 58
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012160
         (974 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001003668.2| keratin, type II cuticular Hb3 [Mus musculus].    459   e-129
Alignment   gi|NP_001188252.1| type II hair keratin [Mus musculus].              442   e-124
Alignment   gi|XP_003085117.1| PREDICTED: keratin, type II cuticular Hb6 is...   442   e-124
Alignment   gi|XP_003085115.1| PREDICTED: keratin, type II cuticular Hb6 is...   442   e-124
Alignment   gi|XP_003085116.1| PREDICTED: keratin, type II cuticular Hb6 is...   442   e-124
Alignment   gi|XP_003086033.1| PREDICTED: keratin, type II cuticular Hb6 is...   442   e-124
Alignment   gi|XP_003086031.1| PREDICTED: keratin, type II cuticular Hb6 is...   442   e-124
Alignment   gi|XP_003086030.1| PREDICTED: keratin, type II cuticular Hb6 is...   442   e-124
Alignment   gi|XP_003086032.1| PREDICTED: keratin, type II cuticular Hb6 is...   442   e-124
Alignment   gi|NP_034797.1| keratin, type II cuticular Hb6 [Mus musculus].       441   e-124

>ref|NP_001003668.2| keratin, type II cuticular Hb3 [Mus musculus].
          Length = 495

 Score =  459 bits (1181), Expect = e-129
 Identities = 231/311 (74%), Positives = 254/311 (81%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXX 198
           MSC SSRLGA  GVR+FSCASACGPRPGRCCISAAPYRGISCYRGL+             
Sbjct: 1   MSCFSSRLGASCGVRAFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSRSVCGPFR 60

Query: 199 XXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 378
                            PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+
Sbjct: 61  SGSCGRSFGYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNS 120

Query: 379 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 558
           +FAAFIDKVRFLEQQNKLLETK QFYQNR+CCESN+EPLF GYIE LRREAE VEADSGR
Sbjct: 121 KFAAFIDKVRFLEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIEALRREAECVEADSGR 180

Query: 559 LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQE 738
           LA+ELNHVQE +EGYKK+YEEEVALRAT+ENEFVALKKDVDCAY++KSDLEAN EALTQE
Sbjct: 181 LAAELNHVQESMEGYKKRYEEEVALRATSENEFVALKKDVDCAYLRKSDLEANAEALTQE 240

Query: 739 IDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAES 918
            DF          +LH+HISDTSV+VKMDNSRDL+M+ +VAE +AQYDDIASRSRAEAES
Sbjct: 241 TDFLRQLYEEETRLLHSHISDTSVVVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAES 300

Query: 919 WYRSNGEEIRA 951
           WYR+  EE++A
Sbjct: 301 WYRTKCEEMKA 311


>ref|NP_001188252.1| type II hair keratin [Mus musculus].
          Length = 479

 Score =  442 bits (1136), Expect = e-124
 Identities = 223/300 (74%), Positives = 243/300 (81%)
 Frame = +1

Query: 52  FGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXXXXX 231
           F   +FSCASACGPRPGRCCISAAPYRGISCYRGL+                        
Sbjct: 5   FRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRSFGYR 64

Query: 232 XXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRF 411
                 PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDKVRF
Sbjct: 65  SGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDKVRF 124

Query: 412 LEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEV 591
           LEQQNKLLETK QFYQNR+CCESN+EPLF GYIETLRREAE VEADSGRLA+ELNH QE 
Sbjct: 125 LEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNHAQES 184

Query: 592 LEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXX 771
           +EGYKK+YEEEVALRATAENEFVALKKDVDCAY++KSDLEAN EALTQE DF        
Sbjct: 185 MEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRMYDEE 244

Query: 772 XXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIRA 951
             +LH+HISDTSVIVKMDNSRDL+M+ +VAE +AQYDDIASRSRAEAESWYR+  EE++A
Sbjct: 245 TRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEMKA 304


>ref|XP_003085117.1| PREDICTED: keratin, type II cuticular Hb6 isoform 4 [Mus musculus].
          Length = 414

 Score =  442 bits (1136), Expect = e-124
 Identities = 223/300 (74%), Positives = 243/300 (81%)
 Frame = +1

Query: 52  FGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXXXXX 231
           F   +FSCASACGPRPGRCCISAAPYRGISCYRGL+                        
Sbjct: 5   FRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRSFGYR 64

Query: 232 XXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRF 411
                 PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDKVRF
Sbjct: 65  SGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDKVRF 124

Query: 412 LEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEV 591
           LEQQNKLLETK QFYQNR+CCESN+EPLF GYIETLRREAE VEADSGRLA+ELNH QE 
Sbjct: 125 LEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNHAQES 184

Query: 592 LEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXX 771
           +EGYKK+YEEEVALRATAENEFVALKKDVDCAY++KSDLEAN EALTQE DF        
Sbjct: 185 MEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRMYDEE 244

Query: 772 XXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIRA 951
             +LH+HISDTSVIVKMDNSRDL+M+ +VAE +AQYDDIASRSRAEAESWYR+  EE++A
Sbjct: 245 TRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEMKA 304


>ref|XP_003085115.1| PREDICTED: keratin, type II cuticular Hb6 isoform 2 [Mus musculus].
          Length = 479

 Score =  442 bits (1136), Expect = e-124
 Identities = 223/300 (74%), Positives = 243/300 (81%)
 Frame = +1

Query: 52  FGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXXXXX 231
           F   +FSCASACGPRPGRCCISAAPYRGISCYRGL+                        
Sbjct: 5   FRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRSFGYR 64

Query: 232 XXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRF 411
                 PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDKVRF
Sbjct: 65  SGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDKVRF 124

Query: 412 LEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEV 591
           LEQQNKLLETK QFYQNR+CCESN+EPLF GYIETLRREAE VEADSGRLA+ELNH QE 
Sbjct: 125 LEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNHAQES 184

Query: 592 LEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXX 771
           +EGYKK+YEEEVALRATAENEFVALKKDVDCAY++KSDLEAN EALTQE DF        
Sbjct: 185 MEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRMYDEE 244

Query: 772 XXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIRA 951
             +LH+HISDTSVIVKMDNSRDL+M+ +VAE +AQYDDIASRSRAEAESWYR+  EE++A
Sbjct: 245 TRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEMKA 304


>ref|XP_003085116.1| PREDICTED: keratin, type II cuticular Hb6 isoform 3 [Mus musculus].
          Length = 589

 Score =  442 bits (1136), Expect = e-124
 Identities = 223/300 (74%), Positives = 243/300 (81%)
 Frame = +1

Query: 52  FGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXXXXX 231
           F   +FSCASACGPRPGRCCISAAPYRGISCYRGL+                        
Sbjct: 5   FRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRSFGYR 64

Query: 232 XXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRF 411
                 PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDKVRF
Sbjct: 65  SGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDKVRF 124

Query: 412 LEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEV 591
           LEQQNKLLETK QFYQNR+CCESN+EPLF GYIETLRREAE VEADSGRLA+ELNH QE 
Sbjct: 125 LEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNHAQES 184

Query: 592 LEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXX 771
           +EGYKK+YEEEVALRATAENEFVALKKDVDCAY++KSDLEAN EALTQE DF        
Sbjct: 185 MEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRMYDEE 244

Query: 772 XXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIRA 951
             +LH+HISDTSVIVKMDNSRDL+M+ +VAE +AQYDDIASRSRAEAESWYR+  EE++A
Sbjct: 245 TRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEMKA 304


>ref|XP_003086033.1| PREDICTED: keratin, type II cuticular Hb6 isoform 4 [Mus musculus].
          Length = 414

 Score =  442 bits (1136), Expect = e-124
 Identities = 223/300 (74%), Positives = 243/300 (81%)
 Frame = +1

Query: 52  FGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXXXXX 231
           F   +FSCASACGPRPGRCCISAAPYRGISCYRGL+                        
Sbjct: 5   FRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRSFGYR 64

Query: 232 XXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRF 411
                 PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDKVRF
Sbjct: 65  SGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDKVRF 124

Query: 412 LEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEV 591
           LEQQNKLLETK QFYQNR+CCESN+EPLF GYIETLRREAE VEADSGRLA+ELNH QE 
Sbjct: 125 LEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNHAQES 184

Query: 592 LEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXX 771
           +EGYKK+YEEEVALRATAENEFVALKKDVDCAY++KSDLEAN EALTQE DF        
Sbjct: 185 MEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRMYDEE 244

Query: 772 XXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIRA 951
             +LH+HISDTSVIVKMDNSRDL+M+ +VAE +AQYDDIASRSRAEAESWYR+  EE++A
Sbjct: 245 TRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEMKA 304


>ref|XP_003086031.1| PREDICTED: keratin, type II cuticular Hb6 isoform 2 [Mus musculus].
          Length = 479

 Score =  442 bits (1136), Expect = e-124
 Identities = 223/300 (74%), Positives = 243/300 (81%)
 Frame = +1

Query: 52  FGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXXXXX 231
           F   +FSCASACGPRPGRCCISAAPYRGISCYRGL+                        
Sbjct: 5   FRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRSFGYR 64

Query: 232 XXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRF 411
                 PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDKVRF
Sbjct: 65  SGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDKVRF 124

Query: 412 LEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEV 591
           LEQQNKLLETK QFYQNR+CCESN+EPLF GYIETLRREAE VEADSGRLA+ELNH QE 
Sbjct: 125 LEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNHAQES 184

Query: 592 LEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXX 771
           +EGYKK+YEEEVALRATAENEFVALKKDVDCAY++KSDLEAN EALTQE DF        
Sbjct: 185 MEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRMYDEE 244

Query: 772 XXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIRA 951
             +LH+HISDTSVIVKMDNSRDL+M+ +VAE +AQYDDIASRSRAEAESWYR+  EE++A
Sbjct: 245 TRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEMKA 304


>ref|XP_003086030.1| PREDICTED: keratin, type II cuticular Hb6 isoform 1 [Mus musculus].
          Length = 479

 Score =  442 bits (1136), Expect = e-124
 Identities = 223/300 (74%), Positives = 243/300 (81%)
 Frame = +1

Query: 52  FGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXXXXX 231
           F   +FSCASACGPRPGRCCISAAPYRGISCYRGL+                        
Sbjct: 5   FRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRSFGYR 64

Query: 232 XXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRF 411
                 PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDKVRF
Sbjct: 65  SGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDKVRF 124

Query: 412 LEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEV 591
           LEQQNKLLETK QFYQNR+CCESN+EPLF GYIETLRREAE VEADSGRLA+ELNH QE 
Sbjct: 125 LEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNHAQES 184

Query: 592 LEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXX 771
           +EGYKK+YEEEVALRATAENEFVALKKDVDCAY++KSDLEAN EALTQE DF        
Sbjct: 185 MEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRMYDEE 244

Query: 772 XXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIRA 951
             +LH+HISDTSVIVKMDNSRDL+M+ +VAE +AQYDDIASRSRAEAESWYR+  EE++A
Sbjct: 245 TRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEMKA 304


>ref|XP_003086032.1| PREDICTED: keratin, type II cuticular Hb6 isoform 3 [Mus musculus].
          Length = 589

 Score =  442 bits (1136), Expect = e-124
 Identities = 223/300 (74%), Positives = 243/300 (81%)
 Frame = +1

Query: 52  FGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXXXXX 231
           F   +FSCASACGPRPGRCCISAAPYRGISCYRGL+                        
Sbjct: 5   FRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRSFGYR 64

Query: 232 XXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRF 411
                 PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN+RFAAFIDKVRF
Sbjct: 65  SGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSRFAAFIDKVRF 124

Query: 412 LEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEV 591
           LEQQNKLLETK QFYQNR+CCESN+EPLF GYIETLRREAE VEADSGRLA+ELNH QE 
Sbjct: 125 LEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIETLRREAECVEADSGRLAAELNHAQES 184

Query: 592 LEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXX 771
           +EGYKK+YEEEVALRATAENEFVALKKDVDCAY++KSDLEAN EALTQE DF        
Sbjct: 185 MEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRMYDEE 244

Query: 772 XXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIRA 951
             +LH+HISDTSVIVKMDNSRDL+M+ +VAE +AQYDDIASRSRAEAESWYR+  EE++A
Sbjct: 245 TRILHSHISDTSVIVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEMKA 304


>ref|NP_034797.1| keratin, type II cuticular Hb6 [Mus musculus].
          Length = 486

 Score =  441 bits (1134), Expect = e-124
 Identities = 221/303 (72%), Positives = 245/303 (80%)
 Frame = +1

Query: 43  GAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXX 222
           G+  G R+FSCASACGPRPGRCCISAAPYRGISCYRGL+                     
Sbjct: 4   GSYCGGRAFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSQSVCGAFRSGSCGRSF 63

Query: 223 XXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDK 402
                    PSPPCITTVS+NE LLTPLNLEIDPNAQCVK EEKEQIK LN++FAAFIDK
Sbjct: 64  GYRSGGICGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSKFAAFIDK 123

Query: 403 VRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHV 582
           VRFLEQQNKLLETK QFYQNR+CCESN+EPLF GYIE LRREAE VEADSGRLA+ELNH 
Sbjct: 124 VRFLEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIEALRREAECVEADSGRLAAELNHA 183

Query: 583 QEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXX 762
           QE +EGYKK+YEEEV+LRATAENEFVALKKDVDCAY++KSDLEAN EALTQE DF     
Sbjct: 184 QESMEGYKKRYEEEVSLRATAENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRRMY 243

Query: 763 XXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEE 942
                +LH+HISDTS++VKMDNSRDL+M+ +VAE +AQYDDIASRSRAEAESWYR+  EE
Sbjct: 244 DEETRILHSHISDTSIVVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEE 303

Query: 943 IRA 951
           I+A
Sbjct: 304 IKA 306


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,718,217
Number of extensions: 389722
Number of successful extensions: 2114
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 2005
Number of HSP's successfully gapped: 74
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012160
         (974 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002272.2| keratin, type II cuticular Hb1 [Homo sapiens].       452   e-127
Alignment   gi|NP_002273.3| keratin, type II cuticular Hb3 [Homo sapiens].       451   e-127
Alignment   gi|NP_002275.1| keratin, type II cuticular Hb6 [Homo sapiens].       449   e-126
Alignment   gi|NP_002274.1| keratin, type II cuticular Hb5 [Homo sapiens].       425   e-119
Alignment   gi|NP_149034.2| keratin, type II cuticular Hb4 [Homo sapiens].       306   2e-83
Alignment   gi|NP_149022.3| keratin, type II cuticular Hb2 [Homo sapiens].       290   2e-78
Alignment   gi|NP_000415.2| keratin, type II cytoskeletal 5 [Homo sapiens].      249   2e-66
Alignment   gi|NP_005545.1| keratin, type II cytoskeletal 6A [Homo sapiens].     247   1e-65
Alignment   gi|NP_004684.2| keratin, type II cytoskeletal 75 [Homo sapiens].     246   3e-65
Alignment   gi|NP_775109.2| keratin, type II cytoskeletal 6C [Homo sapiens].     245   5e-65

>ref|NP_002272.2| keratin, type II cuticular Hb1 [Homo sapiens].
          Length = 505

 Score =  452 bits (1162), Expect = e-127
 Identities = 228/303 (75%), Positives = 249/303 (82%)
 Frame = +1

Query: 43  GAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXX 222
           G+ FG R+FSC SACGPRPGRCCI+AAPYRGISCYRGLT                     
Sbjct: 4   GSGFGGRAFSCISACGPRPGRCCITAAPYRGISCYRGLTGGFGSHSVCGGFRAGSCGRSF 63

Query: 223 XXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDK 402
                    PSPPCITTVS+NE LLTPLNLEIDPNAQCVKQEEKEQIK LN+RFAAFIDK
Sbjct: 64  GYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKSLNSRFAAFIDK 123

Query: 403 VRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHV 582
           VRFLEQQNKLLETKLQFYQNR+CC+SNLEPLF GYIETLRREAE VEADSGRLASELNHV
Sbjct: 124 VRFLEQQNKLLETKLQFYQNRECCQSNLEPLFEGYIETLRREAECVEADSGRLASELNHV 183

Query: 583 QEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXX 762
           QEVLEGYKKKYEEEV+LRATAENEFVALKKDVDCAY++KSDLEANVEAL QEIDF     
Sbjct: 184 QEVLEGYKKKYEEEVSLRATAENEFVALKKDVDCAYLRKSDLEANVEALIQEIDFLRRLY 243

Query: 763 XXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEE 942
                +L +HISDTSV+VK+DNSRDL+M+ I+AE +AQYDDI +RSRAEAESWYRS  EE
Sbjct: 244 EEEILILQSHISDTSVVVKLDNSRDLNMDCIIAEIKAQYDDIVTRSRAEAESWYRSKCEE 303

Query: 943 IRA 951
           ++A
Sbjct: 304 MKA 306


>ref|NP_002273.3| keratin, type II cuticular Hb3 [Homo sapiens].
          Length = 493

 Score =  451 bits (1159), Expect = e-127
 Identities = 230/311 (73%), Positives = 251/311 (80%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXX 198
           M+C  + +G  F   +FSC SACGPRP RCCI+AAPYRGISCYRGLT             
Sbjct: 1   MTCGFNSIGCGFRPGNFSCVSACGPRPSRCCITAAPYRGISCYRGLTGGFGSHSVCGGFR 60

Query: 199 XXXXXXXXXXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNN 378
                            PSPPCITTVS+NE LLTPLNLEIDPNAQCVKQEEKEQIK LN+
Sbjct: 61  AGSCGRSFGYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKSLNS 120

Query: 379 RFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGR 558
           RFAAFIDKVRFLEQQNKLLETKLQFYQNR+CC+SNLEPLF GYIETLRREAE VEADSGR
Sbjct: 121 RFAAFIDKVRFLEQQNKLLETKLQFYQNRECCQSNLEPLFAGYIETLRREAECVEADSGR 180

Query: 559 LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQE 738
           LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAY++KSDLEANVEAL QE
Sbjct: 181 LASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANVEALIQE 240

Query: 739 IDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAES 918
           IDF          +L +HISDTSV+VK+DNSRDL+M+ IVAE +AQYDDIA+RSRAEAES
Sbjct: 241 IDFLRRLYEEEIRILQSHISDTSVVVKLDNSRDLNMDCIVAEIKAQYDDIATRSRAEAES 300

Query: 919 WYRSNGEEIRA 951
           WYRS  EE++A
Sbjct: 301 WYRSKCEEMKA 311


>ref|NP_002275.1| keratin, type II cuticular Hb6 [Homo sapiens].
          Length = 486

 Score =  449 bits (1154), Expect = e-126
 Identities = 228/303 (75%), Positives = 248/303 (81%)
 Frame = +1

Query: 43  GAPFGVRSFSCASACGPRPGRCCISAAPYRGISCYRGLTXXXXXXXXXXXXXXXXXXXXX 222
           G+  G R+FSC SACGPRPGRCCI+AAPYRGISCYRGLT                     
Sbjct: 4   GSYCGGRAFSCISACGPRPGRCCITAAPYRGISCYRGLTGGFGSHSVCGGFRAGSCGRSF 63

Query: 223 XXXXXXXXXPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDK 402
                    PSPPCITTVS+NE LLTPLNLEIDPNAQCVKQEEKEQIK LN+RFAAFIDK
Sbjct: 64  GYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKSLNSRFAAFIDK 123

Query: 403 VRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHV 582
           VRFLEQQNKLLETKLQFYQNR+CC+SNLEPLF GYIETLRREAE VEADSGRLASELNHV
Sbjct: 124 VRFLEQQNKLLETKLQFYQNRECCQSNLEPLFEGYIETLRREAECVEADSGRLASELNHV 183

Query: 583 QEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXX 762
           QEVLEGYKKKYEEEV+LRATAENEFVALKKDVDCAY++KSDLEANVEAL QEIDF     
Sbjct: 184 QEVLEGYKKKYEEEVSLRATAENEFVALKKDVDCAYLRKSDLEANVEALIQEIDFLRRLY 243

Query: 763 XXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEE 942
                VL +HISDTSV+VK+DNSRDL+M+ I+AE +AQYDDI +RSRAEAESWYRS  EE
Sbjct: 244 EEEIRVLQSHISDTSVVVKLDNSRDLNMDCIIAEIKAQYDDIVTRSRAEAESWYRSKCEE 303

Query: 943 IRA 951
           ++A
Sbjct: 304 MKA 306


>ref|NP_002274.1| keratin, type II cuticular Hb5 [Homo sapiens].
          Length = 507

 Score =  425 bits (1093), Expect = e-119
 Identities = 228/323 (70%), Positives = 248/323 (76%), Gaps = 12/323 (3%)
 Frame = +1

Query: 19  MSCLSSRLGAPFGV-RSFSCASACGPRPG-RCCISAAPYRGISCYRGLTXXXXXXXXXXX 192
           MSC S R+ +  GV R+FS  SA  P+ G RCCISAAPYRG+SCYRGLT           
Sbjct: 1   MSCRSYRISSGCGVTRNFSSCSAVAPKTGNRCCISAAPYRGVSCYRGLTGFGSRSLCNLG 60

Query: 193 XXXXXXXXXXXXXXXXXXX----------PSPPCITTVSINECLLTPLNLEIDPNAQCVK 342
                                        PSPPCITTVS+NE LLTPLNLEIDPNAQCVK
Sbjct: 61  SCGPRIAVGGFRAGSCGRSFGYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVK 120

Query: 343 QEEKEQIKFLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLR 522
           QEEKEQIK LN+RFAAFIDKVRFLEQQNKLLETK QFYQN++CCESNLEPLF+GYIETLR
Sbjct: 121 QEEKEQIKSLNSRFAAFIDKVRFLEQQNKLLETKWQFYQNQRCCESNLEPLFSGYIETLR 180

Query: 523 REAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYVQKS 702
           REAE VEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFV LKKDVDCAY++KS
Sbjct: 181 REAECVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVVLKKDVDCAYLRKS 240

Query: 703 DLEANVEALTQEIDFXXXXXXXXXXVLHAHISDTSVIVKMDNSRDLDMNNIVAEDQAQYD 882
           DLEANVEAL +E  F          VL AHISDTSVIVKMDNSRDL+M+ I+AE +AQYD
Sbjct: 241 DLEANVEALVEESSFLRRLYEEEIRVLQAHISDTSVIVKMDNSRDLNMDCIIAEIKAQYD 300

Query: 883 DIASRSRAEAESWYRSNGEEIRA 951
           D+ASRSRAEAESWYRS  EE++A
Sbjct: 301 DVASRSRAEAESWYRSKCEEMKA 323


>ref|NP_149034.2| keratin, type II cuticular Hb4 [Homo sapiens].
          Length = 600

 Score =  306 bits (783), Expect = 2e-83
 Identities = 151/233 (64%), Positives = 189/233 (81%)
 Frame = +1

Query: 250 PSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNK 429
           P+ P IT V++N+ LLTPLNLEIDPNAQ VK++EKEQIK LNN+FA+FIDKVRFLEQQNK
Sbjct: 132 PAAPSITAVTVNKSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASFIDKVRFLEQQNK 191

Query: 430 LLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKK 609
           LLETK  F Q ++C  SNLEPLF  YI  LRR+ E++ +D  RL +E NH+Q+VLEG+KK
Sbjct: 192 LLETKWSFLQEQKCIRSNLEPLFESYITNLRRQLEVLVSDQARLQAERNHLQDVLEGFKK 251

Query: 610 KYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHA 789
           KYEEEV  RA AENEFVALKKDVD A++ KSDLEANV+ LTQEIDF          +L +
Sbjct: 252 KYEEEVVCRANAENEFVALKKDVDAAFMNKSDLEANVDTLTQEIDFLKTLYMEEIQLLQS 311

Query: 790 HISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
           HIS+TSVIVKMDNSRDL+++ I+AE +AQY+++A RSRA+AE+WY++  EE++
Sbjct: 312 HISETSVIVKMDNSRDLNLDGIIAEVKAQYEEVARRSRADAEAWYQTKYEEMQ 364


>ref|NP_149022.3| keratin, type II cuticular Hb2 [Homo sapiens].
          Length = 513

 Score =  290 bits (741), Expect = 2e-78
 Identities = 146/229 (63%), Positives = 178/229 (77%)
 Frame = +1

Query: 262 CITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNKLLET 441
           CIT V+INE LL PL LEIDP  Q VK++EKEQIK LNNRFA+FI+KVRFLEQ+NKLLET
Sbjct: 91  CITPVTINESLLVPLALEIDPTVQRVKRDEKEQIKCLNNRFASFINKVRFLEQKNKLLET 150

Query: 442 KLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEE 621
           K  F Q ++CC++N+EP+F GYI  LRR+ + V  D  RL SEL  +Q  LEGYKKKYEE
Sbjct: 151 KWNFMQQQRCCQTNIEPIFEGYISALRRQLDCVSGDRVRLESELCSLQAALEGYKKKYEE 210

Query: 622 EVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHAHISD 801
           E++LR   ENEFVALKKDVD A++ K+DLE N EAL QEIDF          +L + IS+
Sbjct: 211 ELSLRPCVENEFVALKKDVDTAFLMKADLETNAEALVQEIDFLKSLYEEEICLLQSQISE 270

Query: 802 TSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
           TSVIVKMDNSR+LD++ I+AE +AQYDDIASRS+AEAE+WY+   EE+R
Sbjct: 271 TSVIVKMDNSRELDVDGIIAEIKAQYDDIASRSKAEAEAWYQCRYEELR 319


>ref|NP_000415.2| keratin, type II cytoskeletal 5 [Homo sapiens].
          Length = 590

 Score =  249 bits (637), Expect = 2e-66
 Identities = 125/233 (53%), Positives = 172/233 (73%), Gaps = 2/233 (0%)
 Frame = +1

Query: 256 PPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNKLL 435
           P  I  V++N+ LLTPLNL+IDP+ Q V+ EE+EQIK LNN+FA+FIDKVRFLEQQNK+L
Sbjct: 137 PGGIQEVTVNQSLLTPLNLQIDPSIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVL 196

Query: 436 ETKLQFYQNR--QCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKK 609
           +TK    Q +  +    NLEPLF  YI  LRR+ + +  + GRL SEL ++Q+++E +K 
Sbjct: 197 DTKWTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSIVGERGRLDSELRNMQDLVEDFKN 256

Query: 610 KYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHA 789
           KYE+E+  R TAENEFV LKKDVD AY+ K +LEA V+AL  EI+F           +  
Sbjct: 257 KYEDEINKRTTAENEFVMLKKDVDAAYMNKVELEAKVDALMDEINFMKMFFDAELSQMQT 316

Query: 790 HISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
           H+SDTSV++ MDN+R+LD+++I+AE +AQY++IA+RSR EAESWY++  EE++
Sbjct: 317 HVSDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIANRSRTEAESWYQTKYEELQ 369


>ref|NP_005545.1| keratin, type II cytoskeletal 6A [Homo sapiens].
          Length = 564

 Score =  247 bits (631), Expect = 1e-65
 Identities = 125/233 (53%), Positives = 168/233 (72%), Gaps = 2/233 (0%)
 Frame = +1

Query: 256 PPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNKLL 435
           P  I  V++N+ LLTPLNL+IDP  Q V+ EE+EQIK LNN+FA+FIDKVRFLEQQNK+L
Sbjct: 132 PGGIQEVTVNQSLLTPLNLQIDPTIQRVRAEEREQIKTLNNKFASFIDKVRFLEQQNKVL 191

Query: 436 ETKLQFYQNR--QCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKK 609
           ETK    Q +  +    NLEPLF  YI  LRR+ + +  + GRL SEL  +Q+++E +K 
Sbjct: 192 ETKWTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSIVGERGRLDSELRGMQDLVEDFKN 251

Query: 610 KYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHA 789
           KYE+E+  R  AENEFV LKKDVD AY+ K +L+A  + LT EI+F           +  
Sbjct: 252 KYEDEINKRTAAENEFVTLKKDVDAAYMNKVELQAKADTLTDEINFLRALYDAELSQMQT 311

Query: 790 HISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
           HISDTSV++ MDN+R+LD+++I+AE +AQY++IA RSRAEAESWY++  EE++
Sbjct: 312 HISDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQTKYEELQ 364


>ref|NP_004684.2| keratin, type II cytoskeletal 75 [Homo sapiens].
          Length = 551

 Score =  246 bits (627), Expect = 3e-65
 Identities = 124/233 (53%), Positives = 171/233 (73%), Gaps = 2/233 (0%)
 Frame = +1

Query: 256 PPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNKLL 435
           P  I  V++N+ LLTPL+L+IDP  Q V+ EE+EQIK LNN+FA+FIDKVRFLEQQNK+L
Sbjct: 118 PGGIQEVTVNQSLLTPLHLQIDPTIQRVRAEEREQIKTLNNKFASFIDKVRFLEQQNKVL 177

Query: 436 ETKLQFYQNR--QCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKK 609
           ETK    Q +  +    NLEPLF+ Y   LRR+ E +  + GRL +EL ++Q+V+E +K 
Sbjct: 178 ETKWALLQEQGSRTVRQNLEPLFDSYTSELRRQLESITTERGRLEAELRNMQDVVEDFKV 237

Query: 610 KYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHA 789
           +YE+E+  R  AENEFVALKKDVD AY+ K +LEA V++L +EI+F           L  
Sbjct: 238 RYEDEINKRTAAENEFVALKKDVDAAYMNKVELEAKVKSLPEEINFIHSVFDAELSQLQT 297

Query: 790 HISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
            + DTSV++ MDN+R+LD+++I+AE +AQY+DIA+RSRAEAESWY++  EE++
Sbjct: 298 QVGDTSVVLSMDNNRNLDLDSIIAEVKAQYEDIANRSRAEAESWYQTKYEELQ 350


>ref|NP_775109.2| keratin, type II cytoskeletal 6C [Homo sapiens].
          Length = 564

 Score =  245 bits (625), Expect = 5e-65
 Identities = 124/233 (53%), Positives = 168/233 (72%), Gaps = 2/233 (0%)
 Frame = +1

Query: 256 PPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKFLNNRFAAFIDKVRFLEQQNKLL 435
           P  I  V++N+ LLTPLNL+IDP  Q V+ EE+EQIK LNN+FA+FIDKVRFLEQQNK+L
Sbjct: 132 PGGIQEVTVNQSLLTPLNLQIDPAIQRVRAEEREQIKTLNNKFASFIDKVRFLEQQNKVL 191

Query: 436 ETKLQFYQNR--QCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKK 609
           +TK    Q +  +    NLEPLF  YI  LRR+ + +  + GRL SEL ++Q+++E  K 
Sbjct: 192 DTKWTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSIVGERGRLDSELRNMQDLVEDLKN 251

Query: 610 KYEEEVALRATAENEFVALKKDVDCAYVQKSDLEANVEALTQEIDFXXXXXXXXXXVLHA 789
           KYE+E+  R  AENEFV LKKDVD AY+ K +L+A  + LT EI+F           +  
Sbjct: 252 KYEDEINKRTAAENEFVTLKKDVDAAYMNKVELQAKADTLTDEINFLRALYDAELSQMQT 311

Query: 790 HISDTSVIVKMDNSRDLDMNNIVAEDQAQYDDIASRSRAEAESWYRSNGEEIR 948
           HISDTSV++ MDN+R+LD+++I+AE +AQY++IA RSRAEAESWY++  EE++
Sbjct: 312 HISDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQTKYEELQ 364


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 23,595,914
Number of extensions: 475590
Number of successful extensions: 2620
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 2503
Number of HSP's successfully gapped: 72
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012160
         (974 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                         787   0.0  
Sscrofa_Chr10                                                          66   4e-08

>Sscrofa_Chr05 
||          Length = 111506441

 Score =  787 bits (397), Expect = 0.0
 Identities = 403/405 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1        cgccgccgccgccgcaccatgtcctgcctctcctcccgccttggcgcccccttcggggtc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18142890 cgccgccgccgccgcaccatgtcctgcctctcctcccgccttggcgcccccttcggggtc 18142949

                                                                            
Query: 61       cgatccttcagctgcgcctcagcctgcgggccccggcccggccgctgctgcatctcggcc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18142950 cgatccttcagctgcgcctcagcctgcgggccccggcccggccgctgctgcatctcggcc 18143009

                                                                            
Query: 121      gccccctaccggggcatctcctgctaccgcggcctcaccgggggctttagcagccgcagc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18143010 gccccctaccggggcatctcctgctaccgcggcctcaccgggggctttagcagccgcagc 18143069

                                                                            
Query: 181      gtcggcggaggcttccgcgctggctcctatggccgcagcttcgggtaccgctctggcggc 240
                |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 18143070 gtcggcggaggcttccgcgctggctccggtggccgcagcttcgggtaccgctctggcggc 18143129

                                                                            
Query: 241      gtggtccgtcccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacg 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18143130 gtggtccgtcccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacg 18143189

                                                                            
Query: 301      cccctcaacctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcag 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18143190 cccctcaacctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcag 18143249

                                                             
Query: 361      atcaagtttctcaacaacaggttcgccgccttcattgacaaggtg 405
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18143250 atcaagtttctcaacaacaggttcgccgccttcattgacaaggtg 18143294



 Score =  668 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Plus

                                                                            
Query: 65       ccttcagctgcgcctcagcctgcgggccccggcccggccgctgctgcatctcggccgccc 124
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18107565 ccttcagctgcgcctcagcctgcgggccccggcccggccgctgctgcatctcggccgccc 18107624

                                                                            
Query: 125      cctaccggggcatctcctgctaccgcggcctcaccgggggctttagcagccgcagcgtcg 184
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 18107625 cctaccggggcatctcctgctaccgcggcctcaccgggggctttggcagccgcagcgtcg 18107684

                                                                            
Query: 185      gcggaggcttccgcgctggctcctatggccgcagcttcgggtaccgctctggcggcgtgg 244
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18107685 gcggaggcttccgcgctggctcctatggccgcagcttcgggtaccgctctggcggcgtgg 18107744

                                                                            
Query: 245      tccgtcccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacgcccc 304
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18107745 tccgtcccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacgcccc 18107804

                                                                            
Query: 305      tcaacctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcagatca 364
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18107805 tcaacctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcagatca 18107864

                                                         
Query: 365      agtttctcaacaacaggttcgccgccttcattgacaaggtg 405
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 18107865 agtttctcaacaacaggttcgccgccttcattgacaaggtg 18107905



 Score =  648 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Plus

                                                                            
Query: 67       ttcagctgcgcctcagcctgcgggccccggcccggccgctgctgcatctcggccgccccc 126
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 18073211 ttcagctgcgcctcagcctgcgggccccggcctggccgctgctgcatctcggccgccccc 18073270

                                                                            
Query: 127      taccggggcatctcctgctaccgcggcctcaccgggggctttagcagccgcagcgtcggc 186
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 18073271 taccggggcatctcctgctaccgcggcctcaccgggggctttggcagccgcagcgtcggc 18073330

                                                                            
Query: 187      ggaggcttccgcgctggctcctatggccgcagcttcgggtaccgctctggcggcgtggtc 246
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18073331 ggaggcttccgcgctggctcctatggccgcagcttcgggtaccgctctggcggcgtggtc 18073390

                                                                            
Query: 247      cgtcccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacgcccctc 306
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18073391 cgtcccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacgcccctc 18073450

                                                                            
Query: 307      aacctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcagatcaag 366
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18073451 aacctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcagatcaag 18073510

                                                       
Query: 367      tttctcaacaacaggttcgccgccttcattgacaaggtg 405
                | |||||||||||||||||||||||||||||||||||||
Sbjct: 18073511 tgtctcaacaacaggttcgccgccttcattgacaaggtg 18073549



 Score =  613 bits (309), Expect = e-173
 Identities = 333/341 (97%)
 Strand = Plus / Plus

                                                                            
Query: 65       ccttcagctgcgcctcagcctgcgggccccggcccggccgctgctgcatctcggccgccc 124
                ||||||||||| |||| |||||||  || ||| | |||||||||||||||||||||||||
Sbjct: 18152748 ccttcagctgcacctctgcctgcgtacctcgggcaggccgctgctgcatctcggccgccc 18152807

                                                                            
Query: 125      cctaccggggcatctcctgctaccgcggcctcaccgggggctttagcagccgcagcgtcg 184
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 18152808 cctaccggggcatctcctgctaccgcggcctcaccgggggctttggcagccgcagcgtcg 18152867

                                                                            
Query: 185      gcggaggcttccgcgctggctcctatggccgcagcttcgggtaccgctctggcggcgtgg 244
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18152868 gcggaggcttccgcgctggctcctatggccgcagcttcgggtaccgctctggcggcgtgg 18152927

                                                                            
Query: 245      tccgtcccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacgcccc 304
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18152928 tccgtcccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacgcccc 18152987

                                                                            
Query: 305      tcaacctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcagatca 364
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18152988 tcaacctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcagatca 18153047

                                                         
Query: 365      agtttctcaacaacaggttcgccgccttcattgacaaggtg 405
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 18153048 agtttctcaacaacaggttcgccgccttcattgacaaggtg 18153088



 Score =  458 bits (231), Expect = e-126
 Identities = 312/339 (92%)
 Strand = Plus / Minus

                                                                            
Query: 67       ttcagctgcgcctcagcctgcgggccccggcccggccgctgctgcatctcggccgccccc 126
                ||||||||| ||||||| |  ||||||||||| ||||||||||||||| |||| ||||||
Sbjct: 18137206 ttcagctgcacctcagcttctgggccccggccgggccgctgctgcatcacggctgccccc 18137147

                                                                            
Query: 127      taccggggcatctcctgctaccgcggcctcaccgggggctttagcagccgcagcgtcggc 186
                ||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||
Sbjct: 18137146 taccgaggcgtctcctgctaccgcggcctcactgggggctttggcagccgcagcgtcagc 18137087

                                                                            
Query: 187      ggaggcttccgcgctggctcctatggccgcagcttcgggtaccgctctggcggcgtggtc 246
                ||||||||| | |||||||||  |||||||||||||||||||||||| || |||||||||
Sbjct: 18137086 ggaggcttcggtgctggctccagtggccgcagcttcgggtaccgctcgggtggcgtggtc 18137027

                                                                            
Query: 247      cgtcccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacgcccctc 306
                |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 18137026 cgtcccagcccgccctgcatcaccaccgtgtccatcaacgagagcctcctcgcgcccctc 18136967

                                                                            
Query: 307      aacctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcagatcaag 366
                |||||||||||||||| ||| |||||||  ||||||||||||||||||||||||||||| 
Sbjct: 18136966 aacctggagatcgaccacaatgcccagtccgtgaagcaagaggagaaggagcagatcaaa 18136907

                                                       
Query: 367      tttctcaacaacaggttcgccgccttcattgacaaggtg 405
                 ||||||||| ||||||||||||||||||||||||||||
Sbjct: 18136906 attctcaacagcaggttcgccgccttcattgacaaggtg 18136868



 Score =  414 bits (209), Expect = e-113
 Identities = 212/213 (99%)
 Strand = Plus / Plus

                                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaagctgcagttctaccaga 460
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18108642 aggtgcgcttcctggagcagcagaacaagctgctggagaccaagctgcagttctaccaga 18108701

                                                                            
Query: 461      accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 520
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18108702 accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 18108761

                                                                            
Query: 521      ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctccgagctcaaccacg 580
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 18108762 ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctctgagctcaaccacg 18108821

                                                 
Query: 581      tgcaggaggtgctggagggctacaagaagaagt 613
                |||||||||||||||||||||||||||||||||
Sbjct: 18108822 tgcaggaggtgctggagggctacaagaagaagt 18108854



 Score =  406 bits (205), Expect = e-111
 Identities = 212/213 (99%), Gaps = 1/213 (0%)
 Strand = Plus / Plus

                                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaagctgcagttctaccaga 460
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18075432 aggtgcgcttcctggagcagcagaacaagctgctggagaccaagctgcagttctaccaga 18075491

                                                                            
Query: 461      accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 520
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18075492 accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 18075551

                                                                            
Query: 521      ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctccgagctcaaccacg 580
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 18075552 ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctccgagctc-accacg 18075610

                                                 
Query: 581      tgcaggaggtgctggagggctacaagaagaagt 613
                |||||||||||||||||||||||||||||||||
Sbjct: 18075611 tgcaggaggtgctggagggctacaagaagaagt 18075643



 Score =  406 bits (205), Expect = e-111
 Identities = 211/213 (99%)
 Strand = Plus / Plus

                                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaagctgcagttctaccaga 460
                ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 18076021 aggtgcgcttcctggagcagcagacaaagctgctggagaccaagctgcagttctaccaga 18076080

                                                                            
Query: 461      accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 520
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18076081 accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 18076140

                                                                            
Query: 521      ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctccgagctcaaccacg 580
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18076141 ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctccgagctcaaccacg 18076200

                                                 
Query: 581      tgcaggaggtgctggagggctacaagaagaagt 613
                |||||||||||||||||||||||||||||||||
Sbjct: 18076201 tgcaggaggtgctggagggctacaagaagaagt 18076233



 Score =  406 bits (205), Expect = e-111
 Identities = 212/213 (99%), Gaps = 1/213 (0%)
 Strand = Plus / Plus

                                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaagctgcagttctaccaga 460
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18145514 aggtgcgcttc-tggagcagcagaacaagctgctggagaccaagctgcagttctaccaga 18145572

                                                                            
Query: 461      accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 520
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18145573 accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 18145632

                                                                            
Query: 521      ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctccgagctcaaccacg 580
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18145633 ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctccgagctcaaccacg 18145692

                                                 
Query: 581      tgcaggaggtgctggagggctacaagaagaagt 613
                |||||||||||||||||||||||||||||||||
Sbjct: 18145693 tgcaggaggtgctggagggctacaagaagaagt 18145725



 Score =  335 bits (169), Expect = 3e-89
 Identities = 202/213 (94%)
 Strand = Plus / Minus

                                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaagctgcagttctaccaga 460
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 18136239 aggtgcgcttcctggagcagcagaacaagctgctggagaccaagctgcagttcttccaga 18136180

                                                                            
Query: 461      accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 520
                ||||| ||||||| ||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 18136179 accgcaagtgctgtgagagcaacctggagccactgttcaatggctacattgagacgctga 18136120

                                                                            
Query: 521      ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctccgagctcaaccacg 580
                ||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct: 18136119 ggcgggaggccgagcgcgtggaggccgaccgtgggaggctggcctccgaactcaaccacg 18136060

                                                 
Query: 581      tgcaggaggtgctggagggctacaagaagaagt 613
                |||| ||||||||||||||||||||||||||||
Sbjct: 18136059 tgcacgaggtgctggagggctacaagaagaagt 18136027



 Score =  327 bits (165), Expect = 7e-87
 Identities = 201/213 (94%)
 Strand = Plus / Plus

                                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaagctgcagttctaccaga 460
                ||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 18030977 aggtgcgcttccttgagcagcagaacaagctgctggagaccaagtggcagttctaccaga 18031036

                                                                            
Query: 461      accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 520
                |||  |  ||||| ||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 18031037 accagcgctgctgtgagagcaacctggagcctctgttcaatggctacatcgagacactga 18031096

                                                                            
Query: 521      ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctccgagctcaaccacg 580
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 18031097 ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctctgagctcaaccacg 18031156

                                                 
Query: 581      tgcaggaggtgctggagggctacaagaagaagt 613
                |||||||||||||||||||||||||||||||||
Sbjct: 18031157 tgcaggaggtgctggagggctacaagaagaagt 18031189



 Score =  272 bits (137), Expect = 3e-70
 Identities = 194/213 (91%)
 Strand = Plus / Minus

                                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaagctgcagttctaccaga 460
                ||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||
Sbjct: 18053452 aggtgcgcttccttgagcagcagaataagctgctggagaccaagtggcagttctaccaga 18053393

                                                                            
Query: 461      accgccagtgctgcgagagcaacctggagccgctcttcaatggctacatcgagacgctga 520
                ||||  | |||||| |||||| |||||||| ||| |||||||||||||| |||| ||| |
Sbjct: 18053392 accgaaaatgctgcaagagcagcctggagctgctgttcaatggctacattgagatgctaa 18053333

                                                                            
Query: 521      ggcgggaggccgagctcgtggaggccgacagcgggaggctggcctccgagctcaaccacg 580
                ||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 18053332 ggcgggaggccgagtgcgtggaggctgatagcgggaggctggcctccgagctcaaccacg 18053273

                                                 
Query: 581      tgcaggaggtgctggagggctacaagaagaagt 613
                |||||||||||||||||||||||| ||||||||
Sbjct: 18053272 tgcaggaggtgctggagggctacaggaagaagt 18053240



 Score =  252 bits (127), Expect = 3e-64
 Identities = 193/215 (89%)
 Strand = Plus / Plus

                                                                            
Query: 190      ggcttccgcgctggctcctatggccgcagcttcgggtaccgctctggcggcgtggtccgt 249
                ||||||||||||||||||  |||||||||||||||||||||||| || ||||||  | | 
Sbjct: 18029117 ggcttccgcgctggctccggtggccgcagcttcgggtaccgctccgggggcgtgtgcggc 18029176

                                                                            
Query: 250      cccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacgcccctcaac 309
                |||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct: 18029177 cccagcccgccctgcatcaccaccgtgtccgtcaatgagagcctcctcacgcccctcaac 18029236

                                                                            
Query: 310      ctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcagatcaagttt 369
                ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||   
Sbjct: 18029237 ctggagatcgaccccaatgcgcagtgcgtgaagcatgaggagaaggagcagatcaagaac 18029296

                                                   
Query: 370      ctcaacaacaggttcgccgccttcattgacaaggt 404
                ||||||| |||||| || |||||||| ||||||||
Sbjct: 18029297 ctcaacagcaggtttgctgccttcatcgacaaggt 18029331



 Score =  196 bits (99), Expect = 2e-47
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                            
Query: 671      aggatgtggactgcgcctacgtgcagaaatcagacctggaggccaacgtggaggccctga 730
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18147589 aggatgtggactgcgcctacgtgcagaaatcagacctggaggccaacgtggaggccctga 18147648

                                                       
Query: 731      cccaggagatcgacttcctgcggcgactgtatgaggagg 769
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 18147649 cccaggagatcgacttcctgcggcgactgtatgaggagg 18147687



 Score =  194 bits (98), Expect = 6e-47
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                            
Query: 767      aggagctccgagtcctccacgctcacatctcagacacctccgtcatcgtcaagatggaca 826
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18148166 aggagctccgagtcctccacgctcacatctcagacacctccgtcatcgtcaagatggaca 18148225

                                                      
Query: 827      acagccgggacctggacatgaacaacattgtcgccgag 864
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 18148226 acagccgggacctggacatgaacaacattgtcgccgag 18148263



 Score =  190 bits (96), Expect = 1e-45
 Identities = 141/156 (90%)
 Strand = Plus / Minus

                                                                            
Query: 250      cccagcccgccctgcatcaccaccgtgtccatcaacgagtgcctcctcacgcccctcaac 309
                ||||||||||||| ||||||||| ||||||||||  ||| ||||||||||||||||||||
Sbjct: 18055332 cccagcccgccctacatcaccactgtgtccatcattgagggcctcctcacgcccctcaac 18055273

                                                                            
Query: 310      ctggagatcgaccccaacgcccagtgtgtgaagcaagaggagaaggagcagatcaagttt 369
                ||||||||||||||||| || |||||||||||||| |||||||| ||||||| ||||| |
Sbjct: 18055272 ctggagatcgaccccaaagcgcagtgtgtgaagcaggaggagaaagagcagaccaagtgt 18055213

                                                    
Query: 370      ctcaacaacaggttcgccgccttcattgacaaggtg 405
                ||||||||||||||||| || |||| |||| |||||
Sbjct: 18055212 ctcaacaacaggttcgctgctttcactgacgaggtg 18055177



 Score =  163 bits (82), Expect = 2e-37
 Identities = 145/166 (87%)
 Strand = Plus / Plus

                                                                            
Query: 767      aggagctccgagtcctccacgctcacatctcagacacctccgtcatcgtcaagatggaca 826
                ||||| |||| || ||||| || ||||||||||||||||| ||||| |||||| ||||||
Sbjct: 18078136 aggagatccgcgttctccaagcccacatctcagacacctcggtcattgtcaagttggaca 18078195

                                                                            
Query: 827      acagccgggacctggacatgaacaacattgtcgccgaggaccaagctcagtacgatgaca 886
                |||||||||||||| ||||||| ||||| || || |||  | | |||||||| |||||||
Sbjct: 18078196 acagccgggacctgaacatgaataacatcgtggcggagatcaaggctcagtatgatgaca 18078255

                                                              
Query: 887      tcgctagccgcagccgggccgaggctgagtcctggtaccgcagcaa 932
                |||| ||||||||||||||||||||||||  |||||||||||||||
Sbjct: 18078256 tcgccagccgcagccgggccgaggctgagagctggtaccgcagcaa 18078301



 Score =  163 bits (82), Expect = 2e-37
 Identities = 145/166 (87%)
 Strand = Plus / Plus

                                                                            
Query: 767      aggagctccgagtcctccacgctcacatctcagacacctccgtcatcgtcaagatggaca 826
                ||||| |||| |||||||| || ||||||||||||||||| ||||| |||||| ||||||
Sbjct: 18112020 aggagatccgcgtcctccaagcccacatctcagacacctcggtcattgtcaagttggaca 18112079

                                                                            
Query: 827      acagccgggacctggacatgaacaacattgtcgccgaggaccaagctcagtacgatgaca 886
                |||||||||||||| ||||| | ||||| || || |||  | | ||||| ||||||||||
Sbjct: 18112080 acagccgggacctgaacatggataacatcgtggcggagatcaaggctcactacgatgaca 18112139

                                                              
Query: 887      tcgctagccgcagccgggccgaggctgagtcctggtaccgcagcaa 932
                |||| ||||||||||||||||||||||||  |||||||||||||||
Sbjct: 18112140 tcgccagccgcagccgggccgaggctgagagctggtaccgcagcaa 18112185



 Score =  155 bits (78), Expect = 5e-35
 Identities = 135/154 (87%)
 Strand = Plus / Plus

                                                                            
Query: 779      tcctccacgctcacatctcagacacctccgtcatcgtcaagatggacaacagccgggacc 838
                ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18032941 tcctccatgcccacatctcagacacctccgtcatcgtcaagatggacaacagccgggacc 18033000

                                                                            
Query: 839      tggacatgaacaacattgtcgccgaggaccaagctcagtacgatgacatcgctagccgca 898
                || |||||||     |||||||||||  | | ||||||||||| ||  | || |||||||
Sbjct: 18033001 tgaacatgaattgtgttgtcgccgagatcaaggctcagtacgacgatgttgccagccgca 18033060

                                                  
Query: 899      gccgggccgaggctgagtcctggtaccgcagcaa 932
                | ||||| ||||||||||||||||||||||||||
Sbjct: 18033061 gtcgggctgaggctgagtcctggtaccgcagcaa 18033094



 Score =  141 bits (71), Expect = 8e-31
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                            
Query: 671      aggatgtggactgcgcctacgtgcagaaatcagacctggaggccaacgtggaggccctga 730
                |||| ||||||||||||||||| |  || |||||||||||||||||||||||||||||| 
Sbjct: 18111698 aggacgtggactgcgcctacgtccgcaagtcagacctggaggccaacgtggaggccctgg 18111757

                                                       
Query: 731      cccaggagatcgacttcctgcggcgactgtatgaggagg 769
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 18111758 tccaggagatcgacttcctgcggcgactgtatgaggagg 18111796



 Score =  133 bits (67), Expect = 2e-28
 Identities = 91/99 (91%)
 Strand = Plus / Plus

                                                                            
Query: 671      aggatgtggactgcgcctacgtgcagaaatcagacctggaggccaacgtggaggccctga 730
                |||| ||||||||||||||| | |  || |||||||||||||||||||||||||||||| 
Sbjct: 18077469 aggacgtggactgcgcctacatccgcaagtcagacctggaggccaacgtggaggccctgg 18077528

                                                       
Query: 731      cccaggagatcgacttcctgcggcgactgtatgaggagg 769
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 18077529 tccaggagatcgacttcctgcggcgactgtatgaggagg 18077567



 Score =  115 bits (58), Expect = 5e-23
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                            
Query: 612      gtatgaagaggaggtggcactaagggccaccgccgagaatgaatttgtggctctgaagaa 671
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 18146578 gtatgaagaggaggtggcactgagggccaccgccgagaatgaatttgtggctctgaagaa 18146637

                  
Query: 672      gg 673
                ||
Sbjct: 18146638 gg 18146639



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                           
Query: 671      aggatgtggactgcgcctacgtgcagaaatcagacctggaggccaacgtggaggccctg 729
                |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 18031906 aggatgtggactgcgcctacctgcggaagtcagacctggaggccaacgtggaggccctg 18031964



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 90/106 (84%)
 Strand = Plus / Minus

                                                                            
Query: 820      atggacaacagccgggacctggacatgaacaacattgtcgccgaggaccaagctcagtac 879
                |||||||||| |||   ||||||| || ||| |||  ||||||||| | |||| ||||| 
Sbjct: 18281857 atggacaacaaccgcagcctggacctggacagcatcatcgccgaggtcaaagcacagtat 18281798

                                                              
Query: 880      gatgacatcgctagccgcagccgggccgaggctgagtcctggtacc 925
                || |||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 18281797 gaggacatcgccaaccgcagccgggccgaggctgagtcctggtacc 18281752



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                   
Query: 790      cacatctcagacacctccgtcatcgtcaagatggacaacagccgggacctg 840
                ||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct: 18012698 cacatctcagagacatccgtcatcgtgaagatggacaacagccgggacctg 18012748



 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                            
Query: 767      aggagctccgagtcctccacgctcacatctcagacacctccgtcatcgtcaagatggaca 826
                ||||| || ||||||| || || ||||||||||| || |  ||||| |||||||||||||
Sbjct: 18134320 aggagatcagagtccttcaagcccacatctcagatactttggtcattgtcaagatggaca 18134261

                                    
Query: 827      acagccgggacctggacatg 846
                |||||||||||||| |||||
Sbjct: 18134260 acagccgggacctgaacatg 18134241



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                            
Query: 612      gtatgaagaggaggtggcactaagggccaccgccgagaatgaatttgtggctctgaagaa 671
                |||||| ||||| || || || |||||||| ||||||||||| |||||||||||||||||
Sbjct: 18109534 gtatgaggaggaagttgccctgagggccacggccgagaatgagtttgtggctctgaagaa 18109593

                  
Query: 672      gg 673
                ||
Sbjct: 18109594 gg 18109595



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                            
Query: 612      gtatgaagaggaggtggcactaagggccaccgccgagaatgaatttgtggctctgaagaa 671
                |||||| ||||| || || || |||||||| ||||||||||| |||||||||||||||||
Sbjct: 18110873 gtatgaggaggaagttgccctgagggccacagccgagaatgagtttgtggctctgaagaa 18110932

                  
Query: 672      gg 673
                ||
Sbjct: 18110933 gg 18110934



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 354      ggagcagatcaagtttctcaacaacaggttcgccgccttcattgacaaggtg 405
                |||||||||||||  ||||||||||| ||||||| ||||||| |||||||||
Sbjct: 18092919 ggagcagatcaagactctcaacaacaagttcgcctccttcatcgacaaggtg 18092868



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                        
Query: 788      ctcacatctcagacacctccgtcatcgtcaagatggacaacagccgggacctggac 843
                |||| |||||||| ||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 18171438 ctcagatctcagagacctcggtcatcgtgaagatggacaatagccgggagctggac 18171493



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                        
Query: 788      ctcacatctcagacacctccgtcatcgtcaagatggacaacagccgggacctggac 843
                |||| |||||||| ||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct: 18250410 ctcagatctcagagacctcggtcatcgtgaagatggacaatagccgggagctggac 18250355



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 354      ggagcagatcaagtttctcaacaacaggttcgccgccttcattgacaaggtg 405
                |||||||||||||  ||||||||||| ||||||| ||||||| |||||||||
Sbjct: 18272244 ggagcagatcaagactctcaacaacaagttcgcctccttcatcgacaaggtg 18272193



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaag 444
                ||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct: 18284656 aggtgcggttcctggagcagcagaacaaggttctggagaccaag 18284613



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaag 444
                ||||||| |||||||||||||||||| || ||||||||||||||
Sbjct: 18395118 aggtgcggttcctggagcagcagaaccaggtgctggagaccaag 18395075



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaag 444
                ||||||| |||||||||||||||||| || ||||||||||||||
Sbjct: 18449183 aggtgcggttcctggagcagcagaaccaggtgctggagaccaag 18449140



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 354      ggagcagatcaagtttctcaacaacaggttcgccgccttcattgacaaggtg 405
                ||||||||||| | |||||||||||| ||| ||| |||||||||||||||||
Sbjct: 18531904 ggagcagatcatggttctcaacaacaagtttgcctccttcattgacaaggtg 18531853



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 401      aggtgcgcttcctggagcagcagaacaagctgctggagaccaag 444
                ||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct: 18610813 aggtgcggttcctggagcagcagaataaggtgctggagaccaag 18610770



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 347      aggagaaggagcagatcaagtttctcaacaacaggttcgccgccttcattgacaaggtg 405
                ||||||||||||||||||||  ||||||||| | ||| ||| ||||||| |||||||||
Sbjct: 18670839 aggagaaggagcagatcaagactctcaacaataagtttgcctccttcatcgacaaggtg 18670781



 Score = 58.0 bits (29), Expect = 9e-06
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 390      cttcattgacaaggtgcgcttcctggagcagcagaac 426
                |||||| || |||||||||||||||||||||||||||
Sbjct: 15692102 cttcatcgagaaggtgcgcttcctggagcagcagaac 15692138


>Sscrofa_Chr10 
||          Length = 79102373

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                                 
Query: 397      gacaaggtgcgcttcctggagcagcagaacaag 429
                |||||||||||||||||||||||||||||||||
Sbjct: 48227503 gacaaggtgcgcttcctggagcagcagaacaag 48227535


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,986,680
Number of extensions: 182
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 40
Length of query: 974
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 953
Effective length of database: 2,808,413,156
Effective search space: 2676417737668
Effective search space used: 2676417737668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)