Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012169
(999 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039513.1| selenium-binding protein 1 [Bos taurus]. 494 e-142
>ref|NP_001039513.1| selenium-binding protein 1 [Bos taurus].
Length = 472
Score = 494 bits (1272), Expect(2) = e-142
Identities = 233/295 (78%), Positives = 249/295 (84%)
Frame = +2
Query: 83 TKCGKCGPGYPTPLEAMKGKFEKTDPASPGREVGKXXXXXXXXXXXXXXXXXXXEEIVYL 262
TKCGKCGPGYP+PLEAMKG EE+VYL
Sbjct: 3 TKCGKCGPGYPSPLEAMKGP---------------------------------REELVYL 29
Query: 263 PCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHRLPMPNMKDELHHSGWNTCSSCFGDSTK 442
PCIYRNT TEAPDYLATVDV+PKSPQY QVIHRLPMPN+KDELHHSGWNTCSSCFGDSTK
Sbjct: 30 PCIYRNTGTEAPDYLATVDVNPKSPQYSQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTK 89
Query: 443 SRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVIEPQDIHAKCDLGYLHTSHCLASGEVMI 622
SRTKL+LP LISSR+YVVDV TEPRAPKLHKV+EP++IHAKCDL YLHTSHCLASGEVMI
Sbjct: 90 SRTKLLLPSLISSRVYVVDVATEPRAPKLHKVVEPEEIHAKCDLSYLHTSHCLASGEVMI 149
Query: 623 SALGDPKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNV 802
SALGDP+GNGKGGFVLLDGETFEVKGTWE+PGGAAP+GYDFWYQPRHNVMISTEWAAPNV
Sbjct: 150 SALGDPRGNGKGGFVLLDGETFEVKGTWEQPGGAAPMGYDFWYQPRHNVMISTEWAAPNV 209
Query: 803 LRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTLHLQDGLIPLEVRFLHHPAASPG 967
LRDGFNPADV+AGLYG L+VWDWQRHE VQTL LQDGLIPLE+RFLH+PAA G
Sbjct: 210 LRDGFNPADVEAGLYGQHLYVWDWQRHERVQTLTLQDGLIPLEIRFLHNPAADQG 264
Score = 29.3 bits (64), Expect(2) = e-142
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3
Query: 963 QGFVGCALGSNI 998
QGFVGCALGSNI
Sbjct: 263 QGFVGCALGSNI 274
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,907,382
Number of extensions: 1371729
Number of successful extensions: 4894
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4888
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012169
(999 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533056.2| PREDICTED: similar to selenium binding protein ... 489 e-139
>ref|XP_533056.2| PREDICTED: similar to selenium binding protein 1 [Canis
familiaris].
Length = 609
Score = 489 bits (1259), Expect(2) = e-139
Identities = 229/295 (77%), Positives = 247/295 (83%)
Frame = +2
Query: 83 TKCGKCGPGYPTPLEAMKGKFEKTDPASPGREVGKXXXXXXXXXXXXXXXXXXXEEIVYL 262
T+CGKCGPGYP+PLEAMKG EEIVYL
Sbjct: 140 TQCGKCGPGYPSPLEAMKGP---------------------------------REEIVYL 166
Query: 263 PCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHRLPMPNMKDELHHSGWNTCSSCFGDSTK 442
PCIY NT EAPDYLATVD+DPKSPQYCQVIHRLPMPN++DELHHSGWN CSSCFGDSTK
Sbjct: 167 PCIYGNTGIEAPDYLATVDIDPKSPQYCQVIHRLPMPNLRDELHHSGWNACSSCFGDSTK 226
Query: 443 SRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVIEPQDIHAKCDLGYLHTSHCLASGEVMI 622
SRTKLMLPCL+SSRIYVVDVG++PRAPKLHKVIE +DIHAKC LGY+HTSHCLASGEVMI
Sbjct: 227 SRTKLMLPCLMSSRIYVVDVGSDPRAPKLHKVIEAEDIHAKCGLGYVHTSHCLASGEVMI 286
Query: 623 SALGDPKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNV 802
S LGD KGNGKGGFVLLDGETFEVKGTWE+PGGAAP+GYDFWYQPRHNVMISTEWAAPNV
Sbjct: 287 STLGDSKGNGKGGFVLLDGETFEVKGTWEQPGGAAPMGYDFWYQPRHNVMISTEWAAPNV 346
Query: 803 LRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTLHLQDGLIPLEVRFLHHPAASPG 967
RDGFNPADV+AGLYGS LHVWDWQRHE++QTL LQDGLIPLE+RFLH+P A+ G
Sbjct: 347 FRDGFNPADVEAGLYGSHLHVWDWQRHEIIQTLTLQDGLIPLEIRFLHNPDAAQG 401
Score = 24.6 bits (52), Expect(2) = e-139
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3
Query: 963 QGFVGCALGSNI 998
QGFVGCAL S I
Sbjct: 400 QGFVGCALSSTI 411
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,613,230
Number of extensions: 1402481
Number of successful extensions: 5190
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5183
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012169
(999 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929678.1| PREDICTED: selenium-binding protein 1 [Sus s... 539 e-155
>ref|XP_001929678.1| PREDICTED: selenium-binding protein 1 [Sus scrofa].
Length = 472
Score = 539 bits (1388), Expect(2) = e-155
Identities = 257/295 (87%), Positives = 259/295 (87%)
Frame = +2
Query: 83 TKCGKCGPGYPTPLEAMKGKFEKTDPASPGREVGKXXXXXXXXXXXXXXXXXXXEEIVYL 262
TKCGKCGPGYPTPLEAMKG EEIVYL
Sbjct: 3 TKCGKCGPGYPTPLEAMKGP---------------------------------REEIVYL 29
Query: 263 PCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHRLPMPNMKDELHHSGWNTCSSCFGDSTK 442
PCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHRLPMPNMKDELHHSGWNTCSSCFGDSTK
Sbjct: 30 PCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHRLPMPNMKDELHHSGWNTCSSCFGDSTK 89
Query: 443 SRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVIEPQDIHAKCDLGYLHTSHCLASGEVMI 622
SRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVIEPQDIHAKCDLGYLHTSHCLASGEVMI
Sbjct: 90 SRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVIEPQDIHAKCDLGYLHTSHCLASGEVMI 149
Query: 623 SALGDPKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNV 802
SALGDPKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNV
Sbjct: 150 SALGDPKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNV 209
Query: 803 LRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTLHLQDGLIPLEVRFLHHPAASPG 967
LRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTLHLQDGLIPLE+RFLH+PAAS G
Sbjct: 210 LRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTLHLQDGLIPLEIRFLHNPAASQG 264
Score = 29.3 bits (64), Expect(2) = e-155
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3
Query: 963 QGFVGCALGSNI 998
QGFVGCALGSNI
Sbjct: 263 QGFVGCALGSNI 274
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,370,149
Number of extensions: 887384
Number of successful extensions: 3245
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3241
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012169
(999 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062287.1| selenium-binding protein 2 [Mus musculus]. 454 e-129
Alignment gi|NP_033176.2| selenium-binding protein 1 [Mus musculus]. 454 e-129
>ref|NP_062287.1| selenium-binding protein 2 [Mus musculus].
Length = 472
Score = 454 bits (1168), Expect(2) = e-129
Identities = 214/295 (72%), Positives = 237/295 (80%)
Frame = +2
Query: 83 TKCGKCGPGYPTPLEAMKGKFEKTDPASPGREVGKXXXXXXXXXXXXXXXXXXXEEIVYL 262
TKC KCGPGYPTPLEAMKG EEIVYL
Sbjct: 3 TKCTKCGPGYPTPLEAMKGP---------------------------------REEIVYL 29
Query: 263 PCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHRLPMPNMKDELHHSGWNTCSSCFGDSTK 442
PCIYRNT TEAPDYLATVDVDPKSPQY QVIHRLPMP +KDELHHSGWNTCSSCFGDSTK
Sbjct: 30 PCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTK 89
Query: 443 SRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVIEPQDIHAKCDLGYLHTSHCLASGEVMI 622
SR KL+LP L+SSRIYVVDVG+EPRAPKLHKVIE +I AKC++ HTSHCLASGEVM+
Sbjct: 90 SRNKLILPGLMSSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSNTHTSHCLASGEVMV 149
Query: 623 SALGDPKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNV 802
+ LGD +GNGKG FVLLDGETFEVKGTWE+PGGA+P+GYDFWYQPRHNVM+STEWAAPNV
Sbjct: 150 NTLGDLQGNGKGSFVLLDGETFEVKGTWEKPGGASPMGYDFWYQPRHNVMVSTEWAAPNV 209
Query: 803 LRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTLHLQDGLIPLEVRFLHHPAASPG 967
+DGFNPA V+AGLYGS + VWDWQRHE++QTL + DGLIPLE+RFLH P+A+ G
Sbjct: 210 FKDGFNPAHVEAGLYGSRIFVWDWQRHEIIQTLQMTDGLIPLEIRFLHDPSATQG 264
Score = 26.9 bits (58), Expect(2) = e-129
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +3
Query: 963 QGFVGCALGSNI 998
QGFVGCAL SNI
Sbjct: 263 QGFVGCALSSNI 274
>ref|NP_033176.2| selenium-binding protein 1 [Mus musculus].
Length = 472
Score = 454 bits (1167), Expect(2) = e-129
Identities = 216/295 (73%), Positives = 236/295 (80%)
Frame = +2
Query: 83 TKCGKCGPGYPTPLEAMKGKFEKTDPASPGREVGKXXXXXXXXXXXXXXXXXXXEEIVYL 262
TKC KCGPGY TPLEAMKG EEIVYL
Sbjct: 3 TKCTKCGPGYSTPLEAMKGP---------------------------------REEIVYL 29
Query: 263 PCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHRLPMPNMKDELHHSGWNTCSSCFGDSTK 442
PCIYRNT TEAPDYLATVDVDPKSPQY QVIHRLPMP +KDELHHSGWNTCSSCFGDSTK
Sbjct: 30 PCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTK 89
Query: 443 SRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVIEPQDIHAKCDLGYLHTSHCLASGEVMI 622
SR KL+LP LISSRIYVVDVG+EPRAPKLHKVIE +I AKC++ LHTSHCLASGEVM+
Sbjct: 90 SRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSSLHTSHCLASGEVMV 149
Query: 623 SALGDPKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNV 802
S LGD +GNGKG FVLLDGETFEVKGTWE+PG AAP+GYDFWYQPRHNVM+STEWAAPNV
Sbjct: 150 STLGDLQGNGKGSFVLLDGETFEVKGTWEKPGDAAPMGYDFWYQPRHNVMVSTEWAAPNV 209
Query: 803 LRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTLHLQDGLIPLEVRFLHHPAASPG 967
+DGFNPA V+AGLYGS + VWDWQRHE++QTL + DGLIPLE+RFLH P+A+ G
Sbjct: 210 FKDGFNPAHVEAGLYGSRIFVWDWQRHEIIQTLQMTDGLIPLEIRFLHDPSATQG 264
Score = 26.9 bits (58), Expect(2) = e-129
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +3
Query: 963 QGFVGCALGSNI 998
QGFVGCAL SNI
Sbjct: 263 QGFVGCALSSNI 274
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,895,891
Number of extensions: 1152239
Number of successful extensions: 4369
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4350
Number of HSP's successfully gapped: 6
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012169
(999 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003935.2| selenium-binding protein 1 [Homo sapiens]. 494 e-140
>ref|NP_003935.2| selenium-binding protein 1 [Homo sapiens].
Length = 472
Score = 494 bits (1273), Expect(2) = e-140
Identities = 236/295 (80%), Positives = 250/295 (84%)
Frame = +2
Query: 83 TKCGKCGPGYPTPLEAMKGKFEKTDPASPGREVGKXXXXXXXXXXXXXXXXXXXEEIVYL 262
TKCG CGPGY TPLEAMKG EEIVYL
Sbjct: 3 TKCGNCGPGYSTPLEAMKGP---------------------------------REEIVYL 29
Query: 263 PCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHRLPMPNMKDELHHSGWNTCSSCFGDSTK 442
PCIYRNT TEAPDYLATVDVDPKSPQYCQVIHRLPMPN+KDELHHSGWNTCSSCFGDSTK
Sbjct: 30 PCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTK 89
Query: 443 SRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVIEPQDIHAKCDLGYLHTSHCLASGEVMI 622
SRTKL+LP LISSRIYVVDVG+EPRAPKLHKVIEP+DIHAKC+L +LHTSHCLASGEVMI
Sbjct: 90 SRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMI 149
Query: 623 SALGDPKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNV 802
S+LGD KGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNV
Sbjct: 150 SSLGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNV 209
Query: 803 LRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTLHLQDGLIPLEVRFLHHPAASPG 967
LRDGFNPADV+AGLYGS L+VWDWQRHE+VQTL L+DGLIPLE+RFLH+P A+ G
Sbjct: 210 LRDGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSLKDGLIPLEIRFLHNPDAAQG 264
Score = 24.6 bits (52), Expect(2) = e-140
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3
Query: 963 QGFVGCALGSNI 998
QGFVGCAL S I
Sbjct: 263 QGFVGCALSSTI 274
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,825,539
Number of extensions: 1377979
Number of successful extensions: 5204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5198
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012169
(999 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 539 e-151
>Sscrofa_Chr04
|| Length = 143465943
Score = 539 bits (272), Expect = e-151
Identities = 272/272 (100%)
Strand = Plus / Plus
Query: 80 gctaccaaatgtgggaagtgtggacctggctaccctacccccctggaggccatgaaaggt 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089027 gctaccaaatgtgggaagtgtggacctggctaccctacccccctggaggccatgaaaggt 107089086
Query: 140 aagttcgagaagacagatccagcatcccccggaagggaagtaggcaagccattgctggca 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089087 aagttcgagaagacagatccagcatcccccggaagggaagtaggcaagccattgctggca 107089146
Query: 200 cgtcctgcaccccgactgcctgccctctaccctccaggacccagggaggagattgtctac 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089147 cgtcctgcaccccgactgcctgccctctaccctccaggacccagggaggagattgtctac 107089206
Query: 260 ctgccctgcatttaccgaaacacaagcaccgaggccccggattatctggccactgtggat 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089207 ctgccctgcatttaccgaaacacaagcaccgaggccccggattatctggccactgtggat 107089266
Query: 320 gttgaccctaagtctccccagtattgccaggt 351
||||||||||||||||||||||||||||||||
Sbjct: 107089267 gttgaccctaagtctccccagtattgccaggt 107089298
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 348 aggtcatccaccggctgcccatgcccaacatgaaggacgagctgcatcactcaggatgga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089575 aggtcatccaccggctgcccatgcccaacatgaaggacgagctgcatcactcaggatgga 107089634
Query: 408 acacctgcagcagctgcttcggagacagcaccaagtcacgcaccaagctgatgctgccct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089635 acacctgcagcagctgcttcggagacagcaccaagtcacgcaccaagctgatgctgccct 107089694
Query: 468 gcctcatctcctcccgaatttatgtggtggacgtgggcaccgaaccccgtgccccaaagc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089695 gcctcatctcctcccgaatttatgtggtggacgtgggcaccgaaccccgtgccccaaagc 107089754
Query: 528 tgcacaagg 536
|||||||||
Sbjct: 107089755 tgcacaagg 107089763
Score = 361 bits (182), Expect = 5e-97
Identities = 185/186 (99%)
Strand = Plus / Plus
Query: 655 aggggggtttgtgctgctggatggagagacctttgaggtgaaggggacatgggagaggcc 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107091925 aggggggtttgtgctgctggatggagagacctttgaggtgaaggggacatgggagaggcc 107091984
Query: 715 tggaggtgctgctcccttgggctatgacttctggtaccagcctcgacacaatgtcatgat 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107091985 tggaggtgctgctcccttgggctatgacttctggtaccagcctcgacacaatgtcatgat 107092044
Query: 775 cagcaccgaatgggcggctcccaatgtcttacgagatggcttcaaccccgctgatgtaca 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 107092045 cagcaccgaatgggcggctcccaatgtcttacgagatggcttcaaccccgctgacgtaca 107092104
Query: 835 ggcagg 840
||||||
Sbjct: 107092105 ggcagg 107092110
Score = 291 bits (147), Expect = 4e-76
Identities = 160/163 (98%), Gaps = 1/163 (0%)
Strand = Plus / Plus
Query: 837 cagggctgtatgggagctgcttacacgtgtgggactggcagcgccacgagatggtgcaga 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107092390 cagggctgtatgggagctgcttacacgtgtgggactggcagcgccacgagatggtgcaga 107092449
Query: 897 ccctgcatctgcaggatgggctcatccccctggaggtccgattcctgcaccacccggccg 956
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 107092450 ccctgcatctgcaggatgggctcatccccctggagatccgattcctgcacaacccggccg 107092509
Query: 957 cttccccagggcttcgtaggctgtgccctgggctccaacatcc 999
||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 107092510 ctt-cccagggcttcgtaggctgtgccctgggctccaacatcc 107092551
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 534 aggtcatcgagccccaggacatccatgccaagtgtgacctgggctacctacacaccagcc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107090402 aggtcatcgagccccaggacatccatgccaagtgtgacctgggctacctacacaccagcc 107090461
Query: 594 actgcctggccagtggggaggtgatgatcagtgccctgggagatcccaagggcaatggca 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107090462 actgcctggccagtggggaggtgatgatcagtgccctgggagatcccaagggcaatggca 107090521
Query: 654 aagg 657
||||
Sbjct: 107090522 aagg 107090525
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 7 acagcctgcctctgacacctgcgcgactttcgtctctgcccactcctgataaagcgcacc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107086254 acagcctgcctctgacacctgcgcgactttcgtctctgcccactcctgataaagcgcacc 107086313
Query: 67 agcgagcagcatgg 80
||||||||||||||
Sbjct: 107086314 agcgagcagcatgg 107086327
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,932,759
Number of extensions: 149
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 6
Length of query: 999
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 978
Effective length of database: 2,808,413,156
Effective search space: 2746628066568
Effective search space used: 2746628066568
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)