Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012172
(1565 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039513.1| selenium-binding protein 1 [Bos taurus]. 588 0.0
>ref|NP_001039513.1| selenium-binding protein 1 [Bos taurus].
Length = 472
Score = 588 bits (1515), Expect(3) = 0.0
Identities = 269/298 (90%), Positives = 287/298 (96%)
Frame = +3
Query: 105 TKCGKCGPGYPTPLEAMKGPREEIVYLPCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHR 284
TKCGKCGPGYP+PLEAMKGPREE+VYLPCIYRNT TEAPDYLATVDV+PKSPQY QVIHR
Sbjct: 3 TKCGKCGPGYPSPLEAMKGPREELVYLPCIYRNTGTEAPDYLATVDVNPKSPQYSQVIHR 62
Query: 285 LPMPNMKDELHHSGWNTCSSCFGDSTKSRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVI 464
LPMPN+KDELHHSGWNTCSSCFGDSTKSRTKL+LP LISSR+YVVDV TEPRAPKLHKV+
Sbjct: 63 LPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLLLPSLISSRVYVVDVATEPRAPKLHKVV 122
Query: 465 EPQDIHAKCDLGYLHTSHCLASGEVMISALGDPKGNGKGGFVLLDGETFEVKGTWERPGG 644
EP++IHAKCDL YLHTSHCLASGEVMISALGDP+GNGKGGFVLLDGETFEVKGTWE+PGG
Sbjct: 123 EPEEIHAKCDLSYLHTSHCLASGEVMISALGDPRGNGKGGFVLLDGETFEVKGTWEQPGG 182
Query: 645 AAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTL 824
AAP+GYDFWYQPRHNVMISTEWAAPNVLRDGFNPADV+AGLYG L+VWDWQRHE VQTL
Sbjct: 183 AAPMGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGQHLYVWDWQRHERVQTL 242
Query: 825 HLQDGLIPLEIRFLHNPAASQGFVGCALGSNIQRFYKNEGGTWSVKKVIQVPPQKSEG 998
LQDGLIPLEIRFLHNPAA QGFVGCALGSNIQRFYKN+GGTWSV+KVIQVPP+K +G
Sbjct: 243 TLQDGLIPLEIRFLHNPAADQGFVGCALGSNIQRFYKNQGGTWSVEKVIQVPPKKVKG 300
Score = 271 bits (694), Expect(3) = 0.0
Identities = 132/154 (85%), Positives = 137/154 (88%)
Frame = +1
Query: 991 VKGWMLPEMPXXXXXXXXXXXXRFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVK 1170
VKGW+LPEMP RFLYFSNWLHGDLRQYDISDPKRPRL GQ+FLGGSIVK
Sbjct: 298 VKGWILPEMPSLITDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLVGQIFLGGSIVK 357
Query: 1171 GGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDL 1350
GGPVQVLEDQELK QPEPLVVKGKRVAGGPQMIQLSLDG RLYVTTSLYSAWDKQFYPDL
Sbjct: 358 GGPVQVLEDQELKCQPEPLVVKGKRVAGGPQMIQLSLDGTRLYVTTSLYSAWDKQFYPDL 417
Query: 1351 IREGSVMLQIDVDTEKGGLKLNPHFLVDFGRSPL 1452
IREGSVMLQIDVDT +GGLKLNP+FLVDFG+ PL
Sbjct: 418 IREGSVMLQIDVDTVRGGLKLNPNFLVDFGKEPL 451
Score = 44.7 bits (104), Expect(3) = 0.0
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +3
Query: 1458 ALAHEFRYPGGDCSSDIWL 1514
ALAHE RYPGGDCSSDIWL
Sbjct: 454 ALAHELRYPGGDCSSDIWL 472
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 69,409,328
Number of extensions: 2211388
Number of successful extensions: 9474
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9385
Number of HSP's successfully gapped: 3
Length of query: 521
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 414
Effective length of database: 14,140,958
Effective search space: 5854356612
Effective search space used: 5854356612
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012172
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012172
(1565 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533056.2| PREDICTED: similar to selenium binding protein ... 578 0.0
>ref|XP_533056.2| PREDICTED: similar to selenium binding protein 1 [Canis familiaris].
Length = 609
Score = 578 bits (1490), Expect(3) = 0.0
Identities = 263/298 (88%), Positives = 283/298 (94%)
Frame = +3
Query: 105 TKCGKCGPGYPTPLEAMKGPREEIVYLPCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHR 284
T+CGKCGPGYP+PLEAMKGPREEIVYLPCIY NT EAPDYLATVD+DPKSPQYCQVIHR
Sbjct: 140 TQCGKCGPGYPSPLEAMKGPREEIVYLPCIYGNTGIEAPDYLATVDIDPKSPQYCQVIHR 199
Query: 285 LPMPNMKDELHHSGWNTCSSCFGDSTKSRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVI 464
LPMPN++DELHHSGWN CSSCFGDSTKSRTKLMLPCL+SSRIYVVDVG++PRAPKLHKVI
Sbjct: 200 LPMPNLRDELHHSGWNACSSCFGDSTKSRTKLMLPCLMSSRIYVVDVGSDPRAPKLHKVI 259
Query: 465 EPQDIHAKCDLGYLHTSHCLASGEVMISALGDPKGNGKGGFVLLDGETFEVKGTWERPGG 644
E +DIHAKC LGY+HTSHCLASGEVMIS LGD KGNGKGGFVLLDGETFEVKGTWE+PGG
Sbjct: 260 EAEDIHAKCGLGYVHTSHCLASGEVMISTLGDSKGNGKGGFVLLDGETFEVKGTWEQPGG 319
Query: 645 AAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTL 824
AAP+GYDFWYQPRHNVMISTEWAAPNV RDGFNPADV+AGLYGS LHVWDWQRHE++QTL
Sbjct: 320 AAPMGYDFWYQPRHNVMISTEWAAPNVFRDGFNPADVEAGLYGSHLHVWDWQRHEIIQTL 379
Query: 825 HLQDGLIPLEIRFLHNPAASQGFVGCALGSNIQRFYKNEGGTWSVKKVIQVPPQKSEG 998
LQDGLIPLEIRFLHNP A+QGFVGCAL S IQRFYKN+GGTWSV+KVIQVPP+K +G
Sbjct: 380 TLQDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNQGGTWSVEKVIQVPPKKVKG 437
Score = 276 bits (707), Expect(3) = 0.0
Identities = 135/154 (87%), Positives = 139/154 (90%)
Frame = +1
Query: 991 VKGWMLPEMPXXXXXXXXXXXXRFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVK 1170
VKGWMLPEMP RFLYFSNWLHGDLRQYDISDP+RPRLTGQLFLGGSIVK
Sbjct: 435 VKGWMLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVK 494
Query: 1171 GGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDL 1350
GGPVQVLEDQELKSQPEPLVVKGK+V GGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDL
Sbjct: 495 GGPVQVLEDQELKSQPEPLVVKGKKVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDL 554
Query: 1351 IREGSVMLQIDVDTEKGGLKLNPHFLVDFGRSPL 1452
IREGSVMLQIDVDT KGGLKLNP+FLVDFG+ PL
Sbjct: 555 IREGSVMLQIDVDTVKGGLKLNPNFLVDFGKEPL 588
Score = 44.7 bits (104), Expect(3) = 0.0
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +3
Query: 1458 ALAHEFRYPGGDCSSDIWL 1514
ALAHE RYPGGDCSSDIWL
Sbjct: 591 ALAHELRYPGGDCSSDIWL 609
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 72,324,994
Number of extensions: 2276495
Number of successful extensions: 10283
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10187
Number of HSP's successfully gapped: 3
Length of query: 521
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 414
Effective length of database: 15,307,552
Effective search space: 6337326528
Effective search space used: 6337326528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012172
(1565 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929678.1| PREDICTED: selenium-binding protein 1 [Sus s... 634 0.0
>ref|XP_001929678.1| PREDICTED: selenium-binding protein 1 [Sus scrofa].
Length = 472
Score = 634 bits (1634), Expect(3) = 0.0
Identities = 294/298 (98%), Positives = 297/298 (99%)
Frame = +3
Query: 105 TKCGKCGPGYPTPLEAMKGPREEIVYLPCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHR 284
TKCGKCGPGYPTPLEAMKGPREEIVYLPCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHR
Sbjct: 3 TKCGKCGPGYPTPLEAMKGPREEIVYLPCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHR 62
Query: 285 LPMPNMKDELHHSGWNTCSSCFGDSTKSRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVI 464
LPMPNMKDELHHSGWNTCSSCFGDSTKSRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVI
Sbjct: 63 LPMPNMKDELHHSGWNTCSSCFGDSTKSRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVI 122
Query: 465 EPQDIHAKCDLGYLHTSHCLASGEVMISALGDPKGNGKGGFVLLDGETFEVKGTWERPGG 644
EPQDIHAKCDLGYLHTSHCLASGEVMISALGDPKGNGKGGFVLLDGETFEVKGTWERPGG
Sbjct: 123 EPQDIHAKCDLGYLHTSHCLASGEVMISALGDPKGNGKGGFVLLDGETFEVKGTWERPGG 182
Query: 645 AAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTL 824
AAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTL
Sbjct: 183 AAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTL 242
Query: 825 HLQDGLIPLEIRFLHNPAASQGFVGCALGSNIQRFYKNEGGTWSVKKVIQVPPQKSEG 998
HLQDGLIPLEIRFLHNPAASQGFVGCALGSNIQRFYKNEGGTWSV+KVIQVPP+K +G
Sbjct: 243 HLQDGLIPLEIRFLHNPAASQGFVGCALGSNIQRFYKNEGGTWSVEKVIQVPPKKVKG 300
Score = 284 bits (726), Expect(3) = 0.0
Identities = 139/154 (90%), Positives = 141/154 (91%)
Frame = +1
Query: 991 VKGWMLPEMPXXXXXXXXXXXXRFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVK 1170
VKGWMLPEMP RFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVK
Sbjct: 298 VKGWMLPEMPSLITDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVK 357
Query: 1171 GGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDL 1350
GGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDL
Sbjct: 358 GGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDL 417
Query: 1351 IREGSVMLQIDVDTEKGGLKLNPHFLVDFGRSPL 1452
IREGSVMLQIDVDTEKGGLKLNP+FLVDFG+ PL
Sbjct: 418 IREGSVMLQIDVDTEKGGLKLNPNFLVDFGKEPL 451
Score = 44.7 bits (104), Expect(3) = 0.0
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +3
Query: 1458 ALAHEFRYPGGDCSSDIWL 1514
ALAHE RYPGGDCSSDIWL
Sbjct: 454 ALAHELRYPGGDCSSDIWL 472
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,912,475
Number of extensions: 1434665
Number of successful extensions: 6563
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6501
Number of HSP's successfully gapped: 3
Length of query: 521
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 418
Effective length of database: 8,779,541
Effective search space: 3669848138
Effective search space used: 3669848138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012172
(1565 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062287.1| selenium-binding protein 2 [Mus musculus]. 539 0.0
Alignment gi|NP_033176.2| selenium-binding protein 1 [Mus musculus]. 536 0.0
>ref|NP_062287.1| selenium-binding protein 2 [Mus musculus].
Length = 472
Score = 539 bits (1389), Expect(3) = 0.0
Identities = 247/298 (82%), Positives = 273/298 (91%)
Frame = +3
Query: 105 TKCGKCGPGYPTPLEAMKGPREEIVYLPCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHR 284
TKC KCGPGYPTPLEAMKGPREEIVYLPCIYRNT TEAPDYLATVDVDPKSPQY QVIHR
Sbjct: 3 TKCTKCGPGYPTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHR 62
Query: 285 LPMPNMKDELHHSGWNTCSSCFGDSTKSRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVI 464
LPMP +KDELHHSGWNTCSSCFGDSTKSR KL+LP L+SSRIYVVDVG+EPRAPKLHKVI
Sbjct: 63 LPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLMSSRIYVVDVGSEPRAPKLHKVI 122
Query: 465 EPQDIHAKCDLGYLHTSHCLASGEVMISALGDPKGNGKGGFVLLDGETFEVKGTWERPGG 644
E +I AKC++ HTSHCLASGEVM++ LGD +GNGKG FVLLDGETFEVKGTWE+PGG
Sbjct: 123 EASEIQAKCNVSNTHTSHCLASGEVMVNTLGDLQGNGKGSFVLLDGETFEVKGTWEKPGG 182
Query: 645 AAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTL 824
A+P+GYDFWYQPRHNVM+STEWAAPNV +DGFNPA V+AGLYGS + VWDWQRHE++QTL
Sbjct: 183 ASPMGYDFWYQPRHNVMVSTEWAAPNVFKDGFNPAHVEAGLYGSRIFVWDWQRHEIIQTL 242
Query: 825 HLQDGLIPLEIRFLHNPAASQGFVGCALGSNIQRFYKNEGGTWSVKKVIQVPPQKSEG 998
+ DGLIPLEIRFLH+P+A+QGFVGCAL SNIQRFYKNE GTWSV+KVIQVP +K +G
Sbjct: 243 QMTDGLIPLEIRFLHDPSATQGFVGCALSSNIQRFYKNEEGTWSVEKVIQVPSKKVKG 300
Score = 258 bits (659), Expect(3) = 0.0
Identities = 123/154 (79%), Positives = 133/154 (86%)
Frame = +1
Query: 991 VKGWMLPEMPXXXXXXXXXXXXRFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVK 1170
VKGWMLPEMP RFLYFSNWLHGD+RQYDIS+P++PRLTGQ+FLGGSIV+
Sbjct: 298 VKGWMLPEMPGLITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLTGQIFLGGSIVR 357
Query: 1171 GGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDL 1350
GG VQVLEDQEL QPEPLVVKGKR+ GGPQMIQLSLDGKRLY TTSLYS WDKQFYPDL
Sbjct: 358 GGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSDWDKQFYPDL 417
Query: 1351 IREGSVMLQIDVDTEKGGLKLNPHFLVDFGRSPL 1452
IREGSVMLQ+DVDT GGLKLNP+FLVDFG+ PL
Sbjct: 418 IREGSVMLQVDVDTVNGGLKLNPNFLVDFGKEPL 451
Score = 43.9 bits (102), Expect(3) = 0.0
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 1458 ALAHEFRYPGGDCSSDIWL 1514
ALAHE RYPGGDCSSDIW+
Sbjct: 454 ALAHELRYPGGDCSSDIWI 472
>ref|NP_033176.2| selenium-binding protein 1 [Mus musculus].
Length = 472
Score = 536 bits (1382), Expect(3) = 0.0
Identities = 248/298 (83%), Positives = 271/298 (90%)
Frame = +3
Query: 105 TKCGKCGPGYPTPLEAMKGPREEIVYLPCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHR 284
TKC KCGPGY TPLEAMKGPREEIVYLPCIYRNT TEAPDYLATVDVDPKSPQY QVIHR
Sbjct: 3 TKCTKCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHR 62
Query: 285 LPMPNMKDELHHSGWNTCSSCFGDSTKSRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVI 464
LPMP +KDELHHSGWNTCSSCFGDSTKSR KL+LP LISSRIYVVDVG+EPRAPKLHKVI
Sbjct: 63 LPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVI 122
Query: 465 EPQDIHAKCDLGYLHTSHCLASGEVMISALGDPKGNGKGGFVLLDGETFEVKGTWERPGG 644
E +I AKC++ LHTSHCLASGEVM+S LGD +GNGKG FVLLDGETFEVKGTWE+PG
Sbjct: 123 EASEIQAKCNVSSLHTSHCLASGEVMVSTLGDLQGNGKGSFVLLDGETFEVKGTWEKPGD 182
Query: 645 AAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTL 824
AAP+GYDFWYQPRHNVM+STEWAAPNV +DGFNPA V+AGLYGS + VWDWQRHE++QTL
Sbjct: 183 AAPMGYDFWYQPRHNVMVSTEWAAPNVFKDGFNPAHVEAGLYGSRIFVWDWQRHEIIQTL 242
Query: 825 HLQDGLIPLEIRFLHNPAASQGFVGCALGSNIQRFYKNEGGTWSVKKVIQVPPQKSEG 998
+ DGLIPLEIRFLH+P+A+QGFVGCAL SNIQRFYKN GTWSV+KVIQVP +K +G
Sbjct: 243 QMTDGLIPLEIRFLHDPSATQGFVGCALSSNIQRFYKNAEGTWSVEKVIQVPSKKVKG 300
Score = 258 bits (658), Expect(3) = 0.0
Identities = 123/154 (79%), Positives = 133/154 (86%)
Frame = +1
Query: 991 VKGWMLPEMPXXXXXXXXXXXXRFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVK 1170
VKGWMLPEMP RFLYFSNWLHGD+RQYDIS+P++PRL GQ+FLGGSIV+
Sbjct: 298 VKGWMLPEMPGLITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLAGQIFLGGSIVR 357
Query: 1171 GGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDL 1350
GG VQVLEDQEL QPEPLVVKGKR+ GGPQMIQLSLDGKRLY TTSLYSAWDKQFYPDL
Sbjct: 358 GGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSAWDKQFYPDL 417
Query: 1351 IREGSVMLQIDVDTEKGGLKLNPHFLVDFGRSPL 1452
IREGS+MLQIDVDT GGLKLNP+FLVDFG+ PL
Sbjct: 418 IREGSMMLQIDVDTVNGGLKLNPNFLVDFGKEPL 451
Score = 43.9 bits (102), Expect(3) = 0.0
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 1458 ALAHEFRYPGGDCSSDIWL 1514
ALAHE RYPGGDCSSDIW+
Sbjct: 454 ALAHELRYPGGDCSSDIWI 472
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,610,944
Number of extensions: 1831557
Number of successful extensions: 7418
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7341
Number of HSP's successfully gapped: 6
Length of query: 521
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 415
Effective length of database: 12,433,743
Effective search space: 5160003345
Effective search space used: 5160003345
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012172
(1565 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003935.2| selenium-binding protein 1 [Homo sapiens]. 585 0.0
>ref|NP_003935.2| selenium-binding protein 1 [Homo sapiens].
Length = 472
Score = 585 bits (1507), Expect(3) = 0.0
Identities = 271/298 (90%), Positives = 286/298 (95%)
Frame = +3
Query: 105 TKCGKCGPGYPTPLEAMKGPREEIVYLPCIYRNTSTEAPDYLATVDVDPKSPQYCQVIHR 284
TKCG CGPGY TPLEAMKGPREEIVYLPCIYRNT TEAPDYLATVDVDPKSPQYCQVIHR
Sbjct: 3 TKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHR 62
Query: 285 LPMPNMKDELHHSGWNTCSSCFGDSTKSRTKLMLPCLISSRIYVVDVGTEPRAPKLHKVI 464
LPMPN+KDELHHSGWNTCSSCFGDSTKSRTKL+LP LISSRIYVVDVG+EPRAPKLHKVI
Sbjct: 63 LPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVI 122
Query: 465 EPQDIHAKCDLGYLHTSHCLASGEVMISALGDPKGNGKGGFVLLDGETFEVKGTWERPGG 644
EP+DIHAKC+L +LHTSHCLASGEVMIS+LGD KGNGKGGFVLLDGETFEVKGTWERPGG
Sbjct: 123 EPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERPGG 182
Query: 645 AAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVQAGLYGSCLHVWDWQRHEMVQTL 824
AAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADV+AGLYGS L+VWDWQRHE+VQTL
Sbjct: 183 AAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQTL 242
Query: 825 HLQDGLIPLEIRFLHNPAASQGFVGCALGSNIQRFYKNEGGTWSVKKVIQVPPQKSEG 998
L+DGLIPLEIRFLHNP A+QGFVGCAL S IQRFYKNEGGTWSV+KVIQVPP+K +G
Sbjct: 243 SLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG 300
Score = 276 bits (707), Expect(3) = 0.0
Identities = 133/154 (86%), Positives = 140/154 (90%)
Frame = +1
Query: 991 VKGWMLPEMPXXXXXXXXXXXXRFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVK 1170
VKGW+LPEMP RFLYFSNWLHGDLRQYDISDP+RPRLTGQLFLGGSIVK
Sbjct: 298 VKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVK 357
Query: 1171 GGPVQVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDL 1350
GGPVQVLED+ELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLY+TTSLYSAWDKQFYPDL
Sbjct: 358 GGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDL 417
Query: 1351 IREGSVMLQIDVDTEKGGLKLNPHFLVDFGRSPL 1452
IREGSVMLQ+DVDT KGGLKLNP+FLVDFG+ PL
Sbjct: 418 IREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPL 451
Score = 43.9 bits (102), Expect(3) = 0.0
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 1458 ALAHEFRYPGGDCSSDIWL 1514
ALAHE RYPGGDCSSDIW+
Sbjct: 454 ALAHELRYPGGDCSSDIWI 472
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 70,777,145
Number of extensions: 2210695
Number of successful extensions: 9382
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9324
Number of HSP's successfully gapped: 3
Length of query: 521
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 414
Effective length of database: 14,770,016
Effective search space: 6114786624
Effective search space used: 6114786624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012172
(1565 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 375 e-101
>Sscrofa_Chr04
|| Length = 143465943
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 271 aggtcatccaccggctgcccatgcccaacatgaaggacgagctgcatcactcaggatgga 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089575 aggtcatccaccggctgcccatgcccaacatgaaggacgagctgcatcactcaggatgga 107089634
Query: 331 acacctgcagcagctgcttcggagacagcaccaagtcacgcaccaagctgatgctgccct 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089635 acacctgcagcagctgcttcggagacagcaccaagtcacgcaccaagctgatgctgccct 107089694
Query: 391 gcctcatctcctcccgaatttatgtggtggacgtgggcaccgaaccccgtgccccaaagc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089695 gcctcatctcctcccgaatttatgtggtggacgtgggcaccgaaccccgtgccccaaagc 107089754
Query: 451 tgcacaagg 459
|||||||||
Sbjct: 107089755 tgcacaagg 107089763
Score = 369 bits (186), Expect = 3e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 578 aggggggtttgtgctgctggatggagagacctttgaggtgaaggggacatgggagaggcc 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107091925 aggggggtttgtgctgctggatggagagacctttgaggtgaaggggacatgggagaggcc 107091984
Query: 638 tggaggtgctgctcccttgggctatgacttctggtaccagcctcgacacaatgtcatgat 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107091985 tggaggtgctgctcccttgggctatgacttctggtaccagcctcgacacaatgtcatgat 107092044
Query: 698 cagcaccgaatgggcggctcccaatgtcttacgagatggcttcaaccccgctgacgtaca 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107092045 cagcaccgaatgggcggctcccaatgtcttacgagatggcttcaaccccgctgacgtaca 107092104
Query: 758 ggcagg 763
||||||
Sbjct: 107092105 ggcagg 107092110
Score = 363 bits (183), Expect = 2e-97
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 760 cagggctgtatgggagctgcttacacgtgtgggactggcagcgccacgagatggtgcaga 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107092390 cagggctgtatgggagctgcttacacgtgtgggactggcagcgccacgagatggtgcaga 107092449
Query: 820 ccctgcatctgcaggatgggctcatccccctggagatccgattcctgcacaacccggccg 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107092450 ccctgcatctgcaggatgggctcatccccctggagatccgattcctgcacaacccggccg 107092509
Query: 880 cttcccagggcttcgtaggctgtgccctgggctccaacatccagcgcttctacaagaatg 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107092510 cttcccagggcttcgtaggctgtgccctgggctccaacatccagcgcttctacaagaatg 107092569
Query: 940 agg 942
|||
Sbjct: 107092570 agg 107092572
Score = 327 bits (165), Expect = 1e-86
Identities = 201/214 (93%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 1353 cagggaaggctctgtgatgctgcagatcgatgtagacacagagaagggagggctgaagtt 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107094364 cagggaaggctctgtgatgctgcagatcgatgtagacacagagaagggagggctgaagtt 107094423
Query: 1413 gaacccccacttcctggtggactttggg-aggagccccttggcccagctctggcccatga 1471
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 107094424 gaaccccaacttcctggtggactttgggaaggagccccttggcccagctctggcccatga 107094483
Query: 1472 gtttcgctacccggggggcgactgcagctctgacatatggctctgaagggcacccctcct 1531
| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 107094484 gcttcgctaccctgggggcgactgcagctctgacatatggctctgaaggccacccctcct 107094543
Query: 1532 agnnnnnnntcatgttctgagccatcctttccgc 1565
|| ||||||||||||||||||||||||
Sbjct: 107094544 agcccccctccatgttctgagccatcctttccgc 107094577
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 457 aggtcatcgagccccaggacatccatgccaagtgtgacctgggctacctacacaccagcc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107090402 aggtcatcgagccccaggacatccatgccaagtgtgacctgggctacctacacaccagcc 107090461
Query: 517 actgcctggccagtggggaggtgatgatcagtgccctgggagatcccaagggcaatggca 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107090462 actgcctggccagtggggaggtgatgatcagtgccctgggagatcccaagggcaatggca 107090521
Query: 577 aagg 580
||||
Sbjct: 107090522 aagg 107090525
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1233 caaggggaaacgagtagccggaggccctcagatgatccagctcagcctggatggcaagcg 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107094054 caaggggaaacgagtagccggaggccctcagatgatccagctcagcctggatggcaagcg 107094113
Query: 1293 tctctatgttaccacgtcgctgtacagtgcctgggacaagcagttttaccccgatctcat 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107094114 tctctatgttaccacgtcgctgtacagtgcctgggacaagcagttttaccccgatctcat 107094173
Query: 1353 cagg 1356
||||
Sbjct: 107094174 cagg 107094177
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1022 gcctcatcactgacatcctgctgtccctggacgaccgcttcctctacttcagcaactggc 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107093412 gcctcatcactgacatcctgctgtccctggacgaccgcttcctctacttcagcaactggc 107093471
Query: 1082 tgcacggggatctgcgacagtatgacatctccgacccaaagaggccccgcctcacaggac 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107093472 tgcacggggatctgcgacagtatgacatctccgacccaaagaggccccgcctcacaggac 107093531
Query: 1142 ag 1143
||
Sbjct: 107093532 ag 107093533
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 158 aggacccagggaggagattgtctacctgccctgcatttaccgaaacacaagcaccgaggc 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089182 aggacccagggaggagattgtctacctgccctgcatttaccgaaacacaagcaccgaggc 107089241
Query: 218 cccggattatctggccactgtggatgttgaccctaagtctccccagtattgccaggt 274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089242 cccggattatctggccactgtggatgttgaccctaagtctccccagtattgccaggt 107089298
Score = 194 bits (98), Expect = 1e-46
Identities = 101/102 (99%)
Strand = Plus / Plus
Query: 1 agttccctccctttgccccttcccgtgcacagcctgcctctgacacctgcgcgactttcg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 107086226 agttccctccctttgccccttcccgggcacagcctgcctctgacacctgcgcgactttcg 107086285
Query: 61 tctctgcccactcctgataaagcgcaccagcgagcagcatgg 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107086286 tctctgcccactcctgataaagcgcaccagcgagcagcatgg 107086327
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1141 cagctcttcctcgggggcagcattgttaagggtggccccgtgcaagtgttggaggaccag 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107093811 cagctcttcctcgggggcagcattgttaagggtggccccgtgcaagtgttggaggaccag 107093870
Query: 1201 gagctaaaatcccagccagagcccctggtggtcaagg 1237
|||||||||||||||||||||||||||||||||||||
Sbjct: 107093871 gagctaaaatcccagccagagcccctggtggtcaagg 107093907
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 102 gctaccaaatgtgggaagtgtggacctggctaccctacccccctggaggccatgaaagg 160
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107089027 gctaccaaatgtgggaagtgtggacctggctaccctacccccctggaggccatgaaagg 107089085
Score = 89.7 bits (45), Expect = 4e-15
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 940 agggaggtacttggtcggtaaaaaaggtgatccaggtgnnnnnnnaaaaaagtgaagggc 999
|||||||||||||||||||| | ||||||||||||||| || ||||||||||||
Sbjct: 107093235 agggaggtacttggtcggtagagaaggtgatccaggtgcccccc-aagaaagtgaagggc 107093293
Query: 1000 tggatgctgcctgaaatgccaag 1022
|||||||||||||||||||||||
Sbjct: 107093294 tggatgctgcctgaaatgccaag 107093316
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,302,564
Number of extensions: 233
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 13
Length of query: 1565
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1544
Effective length of database: 2,808,413,156
Effective search space: 4336189912864
Effective search space used: 4336189912864
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)