Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012183
(1287 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_803455.1| thiosulfate sulfurtransferase [Bos taurus]. 561 e-162
Alignment gi|XP_001249946.1| PREDICTED: thiosulfate sulfurtransferase-lik... 561 e-162
Alignment gi|NP_001029463.1| 3-mercaptopyruvate sulfurtransferase [Bos ta... 380 e-105
Alignment gi|XP_001249853.1| PREDICTED: mercaptopyruvate sulfurtransferas... 380 e-105
>ref|NP_803455.1| thiosulfate sulfurtransferase [Bos taurus].
Length = 297
Score = 561 bits (1447), Expect(2) = e-162
Identities = 267/285 (93%), Positives = 278/285 (97%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFD 543
MV QVLYRALVSTKWLAESVR GK+GP LRVLDASWYSPGTR+ARKEYLERHVPGASFFD
Sbjct: 1 MVHQVLYRALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFD 60
Query: 544 IEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFG 723
IEECR++ SPYE+MLP+EAGFADYVG LGISN+THVVVYDGD+LGSFYAPRVWWMFRVFG
Sbjct: 61 IEECRDKASPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFG 120
Query: 724 HRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLV 903
HRTVSVLNGGFRNWLKEGHPVTSEPS PEPAIFKATL+RSLLKTYEQVLENLESKRFQLV
Sbjct: 121 HRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLV 180
Query: 904 DSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDL 1083
DSRAQGRYLGT+PEPDAVGLDSGHI+GSVNMPFMNFLTEDGFEK PEELRAMFEAKKVDL
Sbjct: 181 DSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDL 240
Query: 1084 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP
Sbjct: 241 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 285
Score = 30.0 bits (66), Expect(2) = e-162
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2
Query: 1214 PPETRVSQGKGGKA 1255
PPET VSQGKGGKA
Sbjct: 284 PPETWVSQGKGGKA 297
>ref|XP_001249946.1| PREDICTED: thiosulfate sulfurtransferase-like [Bos taurus].
Length = 297
Score = 561 bits (1447), Expect(2) = e-162
Identities = 267/285 (93%), Positives = 278/285 (97%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFD 543
MV QVLYRALVSTKWLAESVR GK+GP LRVLDASWYSPGTR+ARKEYLERHVPGASFFD
Sbjct: 1 MVHQVLYRALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFD 60
Query: 544 IEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFG 723
IEECR++ SPYE+MLP+EAGFADYVG LGISN+THVVVYDGD+LGSFYAPRVWWMFRVFG
Sbjct: 61 IEECRDKASPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFG 120
Query: 724 HRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLV 903
HRTVSVLNGGFRNWLKEGHPVTSEPS PEPAIFKATL+RSLLKTYEQVLENLESKRFQLV
Sbjct: 121 HRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLV 180
Query: 904 DSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDL 1083
DSRAQGRYLGT+PEPDAVGLDSGHI+GSVNMPFMNFLTEDGFEK PEELRAMFEAKKVDL
Sbjct: 181 DSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDL 240
Query: 1084 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP
Sbjct: 241 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 285
Score = 30.0 bits (66), Expect(2) = e-162
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2
Query: 1214 PPETRVSQGKGGKA 1255
PPET VSQGKGGKA
Sbjct: 284 PPETWVSQGKGGKA 297
>ref|NP_001029463.1| 3-mercaptopyruvate sulfurtransferase [Bos taurus].
Length = 297
Score = 380 bits (976), Expect = e-105
Identities = 176/286 (61%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGT-RDARKEYLERHVPGASFF 540
M + L+RALVS +W+AE++R + G LR+LDASWY RDAR+E+ ERH+PGA+FF
Sbjct: 1 MASKQLFRALVSAQWVAEALRAPQAGQPLRLLDASWYLAKLGRDARREFEERHIPGAAFF 60
Query: 541 DIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVF 720
DI++C +R SPY+ MLP+ A F++Y GRLG+ THVVVYD + G + APRVWWMFRVF
Sbjct: 61 DIDQCSDRTSPYDHMLPSAAHFSEYAGRLGVGAATHVVVYDASDQGLYAAPRVWWMFRVF 120
Query: 721 GHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQL 900
GHRTVS+L+GG RNWL++G P++S S P+PA F A LD + +KTYE + ENLES+RFQ+
Sbjct: 121 GHRTVSLLDGGLRNWLRQGLPLSSGKSRPQPAEFHAVLDPAYIKTYEDIKENLESRRFQV 180
Query: 901 VDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVD 1080
VD+RA GR+ GTEPEP G++ GHI G++N+PF +FLTEDG EK PEE+R +F+ KKVD
Sbjct: 181 VDARAAGRFRGTEPEP-RDGIEPGHIPGTINIPFTDFLTEDGLEKSPEEIRRLFQDKKVD 239
Query: 1081 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
L+ PL+ATC GVTACH+AL AYLCGKPDV IYDGSW EW+ RA P
Sbjct: 240 LSLPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRAQP 285
>ref|XP_001249853.1| PREDICTED: mercaptopyruvate sulfurtransferase-like isoform 2 [Bos
taurus].
Length = 297
Score = 380 bits (976), Expect = e-105
Identities = 176/286 (61%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGT-RDARKEYLERHVPGASFF 540
M + L+RALVS +W+AE++R + G LR+LDASWY RDAR+E+ ERH+PGA+FF
Sbjct: 1 MASKQLFRALVSAQWVAEALRAPQAGQPLRLLDASWYLAKLGRDARREFEERHIPGAAFF 60
Query: 541 DIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVF 720
DI++C +R SPY+ MLP+ A F++Y GRLG+ THVVVYD + G + APRVWWMFRVF
Sbjct: 61 DIDQCSDRTSPYDHMLPSAAHFSEYAGRLGVGAATHVVVYDASDQGLYAAPRVWWMFRVF 120
Query: 721 GHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQL 900
GHRTVS+L+GG RNWL++G P++S S P+PA F A LD + +KTYE + ENLES+RFQ+
Sbjct: 121 GHRTVSLLDGGLRNWLRQGLPLSSGKSRPQPAEFHAVLDPAYIKTYEDIKENLESRRFQV 180
Query: 901 VDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVD 1080
VD+RA GR+ GTEPEP G++ GHI G++N+PF +FLTEDG EK PEE+R +F+ KKVD
Sbjct: 181 VDARAAGRFRGTEPEP-RDGIEPGHIPGTINIPFTDFLTEDGLEKSPEEIRRLFQDKKVD 239
Query: 1081 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
L+ PL+ATC GVTACH+AL AYLCGKPDV IYDGSW EW+ RA P
Sbjct: 240 LSLPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRAQP 285
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,857,628
Number of extensions: 1649094
Number of successful extensions: 10195
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10029
Number of HSP's successfully gapped: 6
Length of query: 429
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,207,134
Effective search space: 4603111416
Effective search space used: 4603111416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012183
(1287 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538396.1| PREDICTED: similar to thiosulfate sulfurtransfe... 551 e-157
Alignment gi|XP_531744.1| PREDICTED: similar to 3-mercaptopyruvate sulfur... 369 e-102
>ref|XP_538396.1| PREDICTED: similar to thiosulfate sulfurtransferase [Canis
familiaris].
Length = 297
Score = 551 bits (1419), Expect(2) = e-157
Identities = 261/285 (91%), Positives = 272/285 (95%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFD 543
MV QVLYRALVSTKWLAESVR GKLGP LRVLDASWYSPGTR+ARKEYLERHVPGASFFD
Sbjct: 1 MVHQVLYRALVSTKWLAESVRAGKLGPGLRVLDASWYSPGTREARKEYLERHVPGASFFD 60
Query: 544 IEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFG 723
+EECRN SPYEMMLP+EA FADYVGRLGI N THVVVYDGDNLG FYAPRVWWMFRVFG
Sbjct: 61 MEECRNTASPYEMMLPSEAHFADYVGRLGIGNQTHVVVYDGDNLGCFYAPRVWWMFRVFG 120
Query: 724 HRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLV 903
HRTVSVLNGGFRNWLKEGHPVTSEPS PEPA+FKATLDRSLLKTYEQVLENLESKRFQLV
Sbjct: 121 HRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQLV 180
Query: 904 DSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDL 1083
DSR+QGRYLGTEPEPDAVGLDSGHI+GSVNMPFM+FLTEDGFEK EELRAMFEAKKV+L
Sbjct: 181 DSRSQGRYLGTEPEPDAVGLDSGHIRGSVNMPFMDFLTEDGFEKSLEELRAMFEAKKVNL 240
Query: 1084 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
+PLIATCRKGVTACH+ALAAYLCGKPDVA+YDGSWFEWFHRAPP
Sbjct: 241 AQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWFEWFHRAPP 285
Score = 23.9 bits (50), Expect(2) = e-157
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 1214 PPETRVSQGKGGKA 1255
PPETRVSQ K KA
Sbjct: 284 PPETRVSQWKREKA 297
>ref|XP_531744.1| PREDICTED: similar to 3-mercaptopyruvate sulfurtransferase [Canis
familiaris].
Length = 298
Score = 369 bits (946), Expect = e-102
Identities = 173/287 (60%), Positives = 222/287 (77%), Gaps = 2/287 (0%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGT-RDARKEYLERHVPGASFF 540
M Q L+RALVS +W+AE++R + G L++LDASWY P RDAR+E+ ERH+PGA+FF
Sbjct: 1 MAPQQLFRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
Query: 541 DIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVF 720
DI++C +R SPY+ MLP+ FA+Y GRLG+ THVVVYD + G + APRVWWMFR F
Sbjct: 61 DIDQCSDRTSPYDHMLPSAEHFAEYAGRLGVGAATHVVVYDASDQGLYAAPRVWWMFRAF 120
Query: 721 GHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAI-FKATLDRSLLKTYEQVLENLESKRFQ 897
GHRTVS+L+GG R+WL+ G P++S S P PA F+A LD + +KTYE + ENLES+RFQ
Sbjct: 121 GHRTVSLLDGGLRHWLRLGLPLSSGKSRPAPAADFRAALDPAFVKTYEDLKENLESRRFQ 180
Query: 898 LVDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKV 1077
+VD+RA GR+ GTEPEP G++ GHI G+VN+PF +FLT +G EK PEE+ +F+ KKV
Sbjct: 181 VVDARAAGRFRGTEPEP-RDGIEPGHIPGTVNIPFTDFLTSEGLEKSPEEINRLFQDKKV 239
Query: 1078 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
DL++PL+ATC GVTACH+AL AYLCGKPDV IYDGSW EW+ RA P
Sbjct: 240 DLSQPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRAQP 286
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,109,218
Number of extensions: 1681009
Number of successful extensions: 10557
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10436
Number of HSP's successfully gapped: 3
Length of query: 429
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 323
Effective length of database: 15,340,888
Effective search space: 4955106824
Effective search space used: 4955106824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012183
(1287 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926338.2| PREDICTED: thiosulfate sulfurtransferase [Su... 635 0.0
Alignment gi|XP_001926486.2| PREDICTED: LOW QUALITY PROTEIN: 3-mercaptopy... 366 e-101
>ref|XP_001926338.2| PREDICTED: thiosulfate sulfurtransferase [Sus scrofa].
Length = 336
Score = 635 bits (1639), Expect(2) = 0.0
Identities = 308/324 (95%), Positives = 308/324 (95%)
Frame = +1
Query: 247 MEWAGRGVEGSGFEPANFSSXXXXXXXXXXXXXXXXAETMVQQVLYRALVSTKWLAESVR 426
MEWAGRGVEGSGFEPANFSS AETMVQQVLYRALVSTKWLAESVR
Sbjct: 1 MEWAGRGVEGSGFEPANFSSGQGRAPGRRRGRVTRRAETMVQQVLYRALVSTKWLAESVR 60
Query: 427 TGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFDIEECRNRESPYEMMLPTEAGF 606
TGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFDIEECRNRESPYEMMLPTEAGF
Sbjct: 61 TGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFDIEECRNRESPYEMMLPTEAGF 120
Query: 607 ADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPV 786
ADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPV
Sbjct: 121 ADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPV 180
Query: 787 TSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTEPEPDAVGLD 966
TSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTEPEPDAVGLD
Sbjct: 181 TSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTEPEPDAVGLD 240
Query: 967 SGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAA 1146
SGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAA
Sbjct: 241 SGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAA 300
Query: 1147 YLCGKPDVAIYDGSWFEWFHRAPP 1218
YLCGKPDVAIYDGSWFEWFHRAPP
Sbjct: 301 YLCGKPDVAIYDGSWFEWFHRAPP 324
Score = 33.1 bits (74), Expect(2) = 0.0
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 1214 PPETRVSQGKGGKA 1255
PPETRVSQGKGGKA
Sbjct: 323 PPETRVSQGKGGKA 336
>ref|XP_001926486.2| PREDICTED: LOW QUALITY PROTEIN: 3-mercaptopyruvate
sulfurtransferase-like [Sus scrofa].
Length = 319
Score = 366 bits (939), Expect = e-101
Identities = 171/286 (59%), Positives = 220/286 (76%), Gaps = 1/286 (0%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGT-RDARKEYLERHVPGASFF 540
M Q L+RALVS +W+AE++R + G L++LDAS Y P RDAR E+ RH+PGA+FF
Sbjct: 23 MAPQQLFRALVSAQWVAEALRAPRAGQPLQLLDASLYLPKQGRDARLEFEARHIPGAAFF 82
Query: 541 DIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVF 720
D+++C +R SPY+ MLP+ A FA+Y GRLG+S THVVVYD + G + APRVWWMFR F
Sbjct: 83 DLDQCSDRTSPYDHMLPSAAQFAEYTGRLGVSAATHVVVYDASDQGLYAAPRVWWMFRAF 142
Query: 721 GHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQL 900
GHRTVS+L+GG RNWL++G P+++ S P PA F A LD + +KTYE + ENLES+RFQ+
Sbjct: 143 GHRTVSLLDGGLRNWLRQGLPLSAGKSRPVPAEFHAVLDPTYVKTYEDIKENLESRRFQV 202
Query: 901 VDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVD 1080
VD+RA GR+ GTEPEP G++ GHI G++N+PF FLT +G EK PEE+R +F+ KKVD
Sbjct: 203 VDARATGRFRGTEPEP-RDGIEPGHIPGTINIPFTEFLTPEGLEKSPEEIRRLFQEKKVD 261
Query: 1081 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
L+ PL+ATC GVTACH+AL AYLCGKPDV IY+GSW EW+ RA P
Sbjct: 262 LSLPLVATCGSGVTACHVALGAYLCGKPDVPIYNGSWVEWYMRAQP 307
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,942,191
Number of extensions: 1121542
Number of successful extensions: 6622
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6523
Number of HSP's successfully gapped: 3
Length of query: 429
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 327
Effective length of database: 8,804,438
Effective search space: 2879051226
Effective search space used: 2879051226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012183
(1287 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033463.1| thiosulfate sulfurtransferase [Mus musculus]. 531 e-153
Alignment gi|NP_001155965.1| 3-mercaptopyruvate sulfurtransferase [Mus mu... 359 2e-99
Alignment gi|NP_001155964.1| 3-mercaptopyruvate sulfurtransferase [Mus mu... 359 2e-99
Alignment gi|NP_619611.3| 3-mercaptopyruvate sulfurtransferase [Mus muscu... 359 2e-99
>ref|NP_033463.1| thiosulfate sulfurtransferase [Mus musculus].
Length = 297
Score = 531 bits (1369), Expect(2) = e-153
Identities = 250/285 (87%), Positives = 270/285 (94%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFD 543
MV QVLYRALVSTKWLAES+R+G+LGPSLRVLDASWYSPGTR ARKEY ERHVPGASFFD
Sbjct: 1 MVHQVLYRALVSTKWLAESIRSGRLGPSLRVLDASWYSPGTRQARKEYQERHVPGASFFD 60
Query: 544 IEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFG 723
IEECR+ SPYEMMLP+EA F DYVG LGISN+THVVVYDGD+LGSFYAPRVWWMFRVFG
Sbjct: 61 IEECRDTTSPYEMMLPSEAHFGDYVGNLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFG 120
Query: 724 HRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLV 903
HRTVSVLNGGFRNWLKEGHPVTSEPS PEPA+FKATL+ SLLKTYEQVLENL+SKRFQLV
Sbjct: 121 HRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLNLSLLKTYEQVLENLQSKRFQLV 180
Query: 904 DSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDL 1083
DSRAQGRYLGT+PEPD VGLDSGHI+GSVNMPFM+FLT+DGFEK PEELRA+F+ KKVDL
Sbjct: 181 DSRAQGRYLGTQPEPDIVGLDSGHIRGSVNMPFMDFLTKDGFEKSPEELRAIFQDKKVDL 240
Query: 1084 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
++PLIATCRKGVTACH+ALAAYLCGKPDVA+YDGSW EWF RAPP
Sbjct: 241 SQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPP 285
Score = 30.8 bits (68), Expect(2) = e-153
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2
Query: 1214 PPETRVSQGKGGKA 1255
PPETRVSQGK GKA
Sbjct: 284 PPETRVSQGKSGKA 297
>ref|NP_001155965.1| 3-mercaptopyruvate sulfurtransferase [Mus musculus].
Length = 297
Score = 359 bits (922), Expect = 2e-99
Identities = 164/286 (57%), Positives = 215/286 (75%), Gaps = 1/286 (0%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGT-RDARKEYLERHVPGASFF 540
M L+RALVS +W+AE+++ + L++LDASWY P RDAR+E+ ERH+PGA+FF
Sbjct: 1 MAAPQLFRALVSAQWVAEALKAPRSSQPLKLLDASWYLPKLGRDARREFEERHIPGAAFF 60
Query: 541 DIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVF 720
DI+ C + SPY+ MLP FADY G LG+S THVV+YD + G + APRVWWMFR F
Sbjct: 61 DIDRCSDHTSPYDHMLPNATHFADYAGSLGVSAATHVVIYDDSDQGLYSAPRVWWMFRAF 120
Query: 721 GHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQL 900
GH +VS+L+GGFR+WL + P++S SH EPA F A LD S +KT+E +LENL+++RFQ+
Sbjct: 121 GHHSVSLLDGGFRHWLNQNLPISSGKSHSEPAEFSAQLDPSFIKTHEDILENLDARRFQV 180
Query: 901 VDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVD 1080
VD+RA GR+ GT+PEP G++ GHI GSVN+PF FLT +G EK PEE++ +F+ KKVD
Sbjct: 181 VDARAAGRFQGTQPEP-RDGIEPGHIPGSVNIPFTEFLTNEGLEKSPEEIKRLFKEKKVD 239
Query: 1081 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
L+KPL+ATC GVTACH+ L A+LCGK DV +YDGSW EW+ RA P
Sbjct: 240 LSKPLVATCGSGVTACHVVLGAFLCGKSDVPVYDGSWVEWYMRAQP 285
>ref|NP_001155964.1| 3-mercaptopyruvate sulfurtransferase [Mus musculus].
Length = 297
Score = 359 bits (922), Expect = 2e-99
Identities = 164/286 (57%), Positives = 215/286 (75%), Gaps = 1/286 (0%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGT-RDARKEYLERHVPGASFF 540
M L+RALVS +W+AE+++ + L++LDASWY P RDAR+E+ ERH+PGA+FF
Sbjct: 1 MAAPQLFRALVSAQWVAEALKAPRSSQPLKLLDASWYLPKLGRDARREFEERHIPGAAFF 60
Query: 541 DIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVF 720
DI+ C + SPY+ MLP FADY G LG+S THVV+YD + G + APRVWWMFR F
Sbjct: 61 DIDRCSDHTSPYDHMLPNATHFADYAGSLGVSAATHVVIYDDSDQGLYSAPRVWWMFRAF 120
Query: 721 GHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQL 900
GH +VS+L+GGFR+WL + P++S SH EPA F A LD S +KT+E +LENL+++RFQ+
Sbjct: 121 GHHSVSLLDGGFRHWLNQNLPISSGKSHSEPAEFSAQLDPSFIKTHEDILENLDARRFQV 180
Query: 901 VDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVD 1080
VD+RA GR+ GT+PEP G++ GHI GSVN+PF FLT +G EK PEE++ +F+ KKVD
Sbjct: 181 VDARAAGRFQGTQPEP-RDGIEPGHIPGSVNIPFTEFLTNEGLEKSPEEIKRLFKEKKVD 239
Query: 1081 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
L+KPL+ATC GVTACH+ L A+LCGK DV +YDGSW EW+ RA P
Sbjct: 240 LSKPLVATCGSGVTACHVVLGAFLCGKSDVPVYDGSWVEWYMRAQP 285
>ref|NP_619611.3| 3-mercaptopyruvate sulfurtransferase [Mus musculus].
Length = 297
Score = 359 bits (922), Expect = 2e-99
Identities = 164/286 (57%), Positives = 215/286 (75%), Gaps = 1/286 (0%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGT-RDARKEYLERHVPGASFF 540
M L+RALVS +W+AE+++ + L++LDASWY P RDAR+E+ ERH+PGA+FF
Sbjct: 1 MAAPQLFRALVSAQWVAEALKAPRSSQPLKLLDASWYLPKLGRDARREFEERHIPGAAFF 60
Query: 541 DIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVF 720
DI+ C + SPY+ MLP FADY G LG+S THVV+YD + G + APRVWWMFR F
Sbjct: 61 DIDRCSDHTSPYDHMLPNATHFADYAGSLGVSAATHVVIYDDSDQGLYSAPRVWWMFRAF 120
Query: 721 GHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQL 900
GH +VS+L+GGFR+WL + P++S SH EPA F A LD S +KT+E +LENL+++RFQ+
Sbjct: 121 GHHSVSLLDGGFRHWLNQNLPISSGKSHSEPAEFSAQLDPSFIKTHEDILENLDARRFQV 180
Query: 901 VDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVD 1080
VD+RA GR+ GT+PEP G++ GHI GSVN+PF FLT +G EK PEE++ +F+ KKVD
Sbjct: 181 VDARAAGRFQGTQPEP-RDGIEPGHIPGSVNIPFTEFLTNEGLEKSPEEIKRLFKEKKVD 239
Query: 1081 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
L+KPL+ATC GVTACH+ L A+LCGK DV +YDGSW EW+ RA P
Sbjct: 240 LSKPLVATCGSGVTACHVVLGAFLCGKSDVPVYDGSWVEWYMRAQP 285
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,930,757
Number of extensions: 1310569
Number of successful extensions: 7484
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7362
Number of HSP's successfully gapped: 5
Length of query: 429
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 325
Effective length of database: 12,493,815
Effective search space: 4060489875
Effective search space used: 4060489875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012183
(1287 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003303.2| thiosulfate sulfurtransferase [Homo sapiens]. 549 e-157
Alignment gi|NP_001013454.1| 3-mercaptopyruvate sulfurtransferase isoform... 367 e-101
Alignment gi|NP_001123989.1| 3-mercaptopyruvate sulfurtransferase isoform... 367 e-101
Alignment gi|NP_066949.2| 3-mercaptopyruvate sulfurtransferase isoform 1 ... 367 e-101
>ref|NP_003303.2| thiosulfate sulfurtransferase [Homo sapiens].
Length = 297
Score = 549 bits (1415), Expect(2) = e-157
Identities = 257/285 (90%), Positives = 277/285 (97%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFD 543
MV QVLYRALVSTKWLAES+RTGKLGP LRVLDASWYSPGTR+ARKEYLERHVPGASFFD
Sbjct: 1 MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGTREARKEYLERHVPGASFFD 60
Query: 544 IEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFG 723
IEECR+ SPYEMMLP+EAGFA+YVGRLGISN+THVVVYDG++LGSFYAPRVWWMFRVFG
Sbjct: 61 IEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVFG 120
Query: 724 HRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLV 903
HRTVSVLNGGFRNWLKEGHPVTSEPS PEPA+FKATLDRSLLKTYEQVLENLESKRFQLV
Sbjct: 121 HRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQLV 180
Query: 904 DSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDL 1083
DSR+QGR+LGTEPEPDAVGLDSGHI+G+VNMPFM+FLTEDGFEKGPEELRA+F+ KKVDL
Sbjct: 181 DSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTEDGFEKGPEELRALFQTKKVDL 240
Query: 1084 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
++PLIATCRKGVTACH+ALAAYLCGKPDVA+YDGSW EWF RAPP
Sbjct: 241 SQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPP 285
Score = 26.2 bits (56), Expect(2) = e-157
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 1214 PPETRVSQGKGGKA 1255
PPE+RVSQGK KA
Sbjct: 284 PPESRVSQGKSEKA 297
>ref|NP_001013454.1| 3-mercaptopyruvate sulfurtransferase isoform 2 [Homo sapiens].
Length = 297
Score = 367 bits (942), Expect = e-101
Identities = 170/286 (59%), Positives = 219/286 (76%), Gaps = 1/286 (0%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGT-RDARKEYLERHVPGASFF 540
M L RALVS +W+AE++R + G L++LDASWY P RDAR+E+ ERH+PGA+FF
Sbjct: 1 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
Query: 541 DIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVF 720
DI++C +R SPY+ MLP FA+Y GRLG+ THVV+YD + G + APRVWWMFR F
Sbjct: 61 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
Query: 721 GHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQL 900
GH VS+L+GG R+WL++ P++S S P PA F+A LD + +KTYE + ENLES+RFQ+
Sbjct: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
Query: 901 VDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVD 1080
VDSRA GR+ GTEPEP G++ GHI G+VN+PF +FL+++G EK PEE+R +F+ KKVD
Sbjct: 181 VDSRATGRFRGTEPEP-RDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD 239
Query: 1081 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
L+KPL+ATC GVTACH+AL AYLCGKPDV IYDGSW EW+ RA P
Sbjct: 240 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARP 285
>ref|NP_001123989.1| 3-mercaptopyruvate sulfurtransferase isoform 2 [Homo sapiens].
Length = 297
Score = 367 bits (942), Expect = e-101
Identities = 170/286 (59%), Positives = 219/286 (76%), Gaps = 1/286 (0%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGT-RDARKEYLERHVPGASFF 540
M L RALVS +W+AE++R + G L++LDASWY P RDAR+E+ ERH+PGA+FF
Sbjct: 1 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
Query: 541 DIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVF 720
DI++C +R SPY+ MLP FA+Y GRLG+ THVV+YD + G + APRVWWMFR F
Sbjct: 61 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
Query: 721 GHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQL 900
GH VS+L+GG R+WL++ P++S S P PA F+A LD + +KTYE + ENLES+RFQ+
Sbjct: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
Query: 901 VDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVD 1080
VDSRA GR+ GTEPEP G++ GHI G+VN+PF +FL+++G EK PEE+R +F+ KKVD
Sbjct: 181 VDSRATGRFRGTEPEP-RDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD 239
Query: 1081 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
L+KPL+ATC GVTACH+AL AYLCGKPDV IYDGSW EW+ RA P
Sbjct: 240 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARP 285
>ref|NP_066949.2| 3-mercaptopyruvate sulfurtransferase isoform 1 [Homo sapiens].
Length = 317
Score = 367 bits (942), Expect = e-101
Identities = 170/286 (59%), Positives = 219/286 (76%), Gaps = 1/286 (0%)
Frame = +1
Query: 364 MVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGT-RDARKEYLERHVPGASFF 540
M L RALVS +W+AE++R + G L++LDASWY P RDAR+E+ ERH+PGA+FF
Sbjct: 21 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 80
Query: 541 DIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVF 720
DI++C +R SPY+ MLP FA+Y GRLG+ THVV+YD + G + APRVWWMFR F
Sbjct: 81 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 140
Query: 721 GHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQL 900
GH VS+L+GG R+WL++ P++S S P PA F+A LD + +KTYE + ENLES+RFQ+
Sbjct: 141 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 200
Query: 901 VDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVD 1080
VDSRA GR+ GTEPEP G++ GHI G+VN+PF +FL+++G EK PEE+R +F+ KKVD
Sbjct: 201 VDSRATGRFRGTEPEP-RDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD 259
Query: 1081 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP 1218
L+KPL+ATC GVTACH+AL AYLCGKPDV IYDGSW EW+ RA P
Sbjct: 260 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARP 305
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,674,972
Number of extensions: 1611274
Number of successful extensions: 9958
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9787
Number of HSP's successfully gapped: 5
Length of query: 429
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,835,944
Effective search space: 4806845856
Effective search space used: 4806845856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012183
(1287 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1223 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 1223 bits (617), Expect = 0.0
Identities = 617/617 (100%)
Strand = Plus / Plus
Query: 343 gtgacacgcagagctgaaaccatggttcagcaggtgctctaccgggcgctggtctccacc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8350094 gtgacacgcagagctgaaaccatggttcagcaggtgctctaccgggcgctggtctccacc 8350153
Query: 403 aagtggctggcggagtctgtccggactggcaagctggggccaagcctgcgagtgctggac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8350154 aagtggctggcggagtctgtccggactggcaagctggggccaagcctgcgagtgctggac 8350213
Query: 463 gcctcctggtactcgccgggcacccgcgatgctcgcaaggaatacctagagcgccatgtg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8350214 gcctcctggtactcgccgggcacccgcgatgctcgcaaggaatacctagagcgccatgtg 8350273
Query: 523 cccggcgcgtccttctttgacatagaggagtgccggaacagagagtcaccctacgagatg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8350274 cccggcgcgtccttctttgacatagaggagtgccggaacagagagtcaccctacgagatg 8350333
Query: 583 atgctgcccaccgaggcgggcttcgctgactacgtgggccgcctgggcatcagcaacaac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8350334 atgctgcccaccgaggcgggcttcgctgactacgtgggccgcctgggcatcagcaacaac 8350393
Query: 643 acgcacgtggtggtgtatgatggtgataacctgggcagcttctatgcgccgcgggtgtgg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8350394 acgcacgtggtggtgtatgatggtgataacctgggcagcttctatgcgccgcgggtgtgg 8350453
Query: 703 tggatgttccgggtgtttggccaccgcaccgtgtcagtgctcaatggtggcttccgaaac 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8350454 tggatgttccgggtgtttggccaccgcaccgtgtcagtgctcaatggtggcttccgaaac 8350513
Query: 763 tggctgaaggagggccacccagtgacatctgagccctcacacccagagccagccatcttc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8350514 tggctgaaggagggccacccagtgacatctgagccctcacacccagagccagccatcttc 8350573
Query: 823 aaagccacactggaccggtccctgctcaagacctacgagcaggtgctggagaacctcgaa 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8350574 aaagccacactggaccggtccctgctcaagacctacgagcaggtgctggagaacctcgaa 8350633
Query: 883 tcaaagaggttccagctggtggattctcgggctcaagggcggtacctgggcacggagccg 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8350634 tcaaagaggttccagctggtggattctcgggctcaagggcggtacctgggcacggagccg 8350693
Query: 943 gagccagatgcagtagg 959
|||||||||||||||||
Sbjct: 8350694 gagccagatgcagtagg 8350710
Score = 624 bits (315), Expect = e-176
Identities = 328/331 (99%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 957 aggactggactccggccacatccaaggctcagtcaacatgcccttcatgaacttcctgac 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8358503 aggactggactccggccacatccaaggctcagtcaacatgcccttcatgaacttcctgac 8358562
Query: 1017 ggaggacggcttcgagaagggtccagaggagctccgagccatgtttgaagccaagaaggt 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8358563 ggaggacggcttcgagaagggtccagaggagctccgagccatgtttgaagccaagaaggt 8358622
Query: 1077 ggacctcacaaagcccctcattgccacgtgccggaagggtgtcaccgcctgccacattgc 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8358623 ggacctcacaaagcccctcattgccacgtgccggaagggtgtcaccgcctgccacattgc 8358682
Query: 1137 cctggccgcctacctctgcggcaagcccgatgtggccatctatgacggctcctggttcga 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8358683 cctggccgcctacctctgcggcaagcccgatgtggccatctatgacggctcctggttcga 8358742
Query: 1197 gtggttccaccgggctccccccggaaacccgcgtgtcccaggggaagggcgggaaggcct 1256
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 8358743 gtggttccaccgggct-cccccggagacccgagtgtcccaggggaagggcgggaaggcct 8358801
Query: 1257 gagcggtggcctctcctcccgtcgctcaccg 1287
|||||||||||||||||||||||||||||||
Sbjct: 8358802 gagcggtggcctctcctcccgtcgctcaccg 8358832
Score = 254 bits (128), Expect = 1e-64
Identities = 142/149 (95%)
Strand = Plus / Plus
Query: 198 agcgcggagctgggcgaggggcgcacgatnnnnnnngcgtggaggcgcaatggagtgggc 257
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8349314 agcgcggagctgggcgaggggcgcacgatcccccctgcgtggaggcgcaatggagtgggc 8349373
Query: 258 cggccggggagttgagggctccgggtttgaacctgccaacttctccagcgggcaggggcg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8349374 cggccggggagttgagggctccgggtttgaacctgccaacttctccagcgggcaggggcg 8349433
Query: 318 agcgccagggcggcggcgagggcgagtga 346
|||||||||||||||||||||||||||||
Sbjct: 8349434 agcgccagggcggcggcgagggcgagtga 8349462
Score = 228 bits (115), Expect = 6e-57
Identities = 160/175 (91%)
Strand = Plus / Plus
Query: 957 aggactggactccggccacatccaaggctcagtcaacatgcccttcatgaacttcctgac 1016
||||||||||||| |||||| ||| |||||||||||||||||||||||| ||||| ||||
Sbjct: 8359842 aggactggactccagccacacccatggctcagtcaacatgcccttcatggacttcttgac 8359901
Query: 1017 ggaggacggcttcgagaagggtccagaggagctccgagccatgtttgaagccaagaaggt 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8359902 agaggacggcttcgagaagggtccagaggagctccgagccatgtttgaagccaagaaggg 8359961
Query: 1077 ggacctcacaaagcccctcattgccacgtgccggaagggtgtcaccgcctgccac 1131
| | || |||||||| |||||||||| |||| ||||||||||||| ||||||||
Sbjct: 8359962 gaaacttgcaaagcccttcattgccacatgccagaagggtgtcaccacctgccac 8360016
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 gcccactgctgcggccactcggagcccgggctgccggcgccttccactggccaggcggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8349117 gcccactgctgcggccactcggagcccgggctgccggcgccttccactggccaggcggga 8349176
Query: 61 gcgggggag 69
|||||||||
Sbjct: 8349177 gcgggggag 8349185
Score = 65.9 bits (33), Expect = 5e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 123 ggcggatcctggagcatctaagaggcgctgcga 155
|||||||||||||||||||||||||||||||||
Sbjct: 8349239 ggcggatcctggagcatctaagaggcgctgcga 8349271
Score = 60.0 bits (30), Expect = 3e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 1144 gcctacctctgcggcaagcccgatgtggccatctatgacggctcctggttcgagtggt 1201
||||||||||| ||||||||||| ||| ||||||| ||||||||||| | |||||||
Sbjct: 8338935 gcctacctctgtggcaagcccgacgtgcccatctacaacggctcctgggtggagtggt 8338878
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,076,345
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 7
Length of query: 1287
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1266
Effective length of database: 2,808,413,156
Effective search space: 3555451055496
Effective search space used: 3555451055496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)