Animal-Genome cDNA 20110601C-012185


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012185
         (1877 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776344.1| histidine-rich glycoprotein [Bos taurus].            454   e-128
Alignment   gi|XP_002684071.1| PREDICTED: histidine-rich glycoprotein-like ...   256   5e-68
Alignment   gi|NP_001029390.1| fetuin-B precursor [Bos taurus].                   62   1e-09
Alignment   gi|NP_001192684.1| peroxisome proliferator-activated receptor g...    51   3e-06
Alignment   gi|XP_002698496.1| PREDICTED: peroxisome proliferator-activated...    51   3e-06
Alignment   gi|NP_001032717.1| P-selectin glycoprotein ligand 1 [Bos taurus].     50   7e-06

>ref|NP_776344.1| histidine-rich glycoprotein [Bos taurus].
          Length = 546

 Score =  454 bits (1169), Expect = e-128
 Identities = 234/351 (66%), Positives = 255/351 (72%), Gaps = 12/351 (3%)
 Frame = +2

Query: 89   MRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAH 268
            M++L A  L ILLIT QCS AV+PTGCD  EPVA +ALDLINKGRWDGYLF+LL+VADAH
Sbjct: 1    MKVLTAALLSILLITQQCSCAVNPTGCDAVEPVAVRALDLINKGRWDGYLFQLLRVADAH 60

Query: 269  LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQ 448
            LDK ES AVYYLVL VKESDCPVLSRKHWDDCE  VS RPS+ VIGQCKVIA T L G +
Sbjct: 61   LDKVESIAVYYLVLDVKESDCPVLSRKHWDDCELNVSRRPSETVIGQCKVIAITLLAGPE 120

Query: 449  DLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRV 628
            DLRVN FNCTTSS SS L NT DSPVL  FFEDTE YRK+A + LEKY+RENSDFA FRV
Sbjct: 121  DLRVNDFNCTTSSVSSALTNTIDSPVLFYFFEDTELYRKQAEKALEKYQRENSDFAPFRV 180

Query: 629  DKXXXXXXXXXXXXTNYYVDFSVRNCSSRW---RSPTFGFCRADFINDAEASDLENPEDI 799
            DK            T+Y++DFSVRNCSS      S  FGFCRAD   D EASDLE P+DI
Sbjct: 181  DKVKRAMRARGGEGTSYFLDFSVRNCSSHHFPRHSHIFGFCRADLFYDVEASDLETPKDI 240

Query: 800  VINCEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHHDSHKPHKFGC 979
            V NCEVFN K+HRN S  Q HLG  FHSGEHEHSPAGRPP KP  S+DH   H+ + F C
Sbjct: 241  VTNCEVFNLKEHRNFSAVQHHLGRPFHSGEHEHSPAGRPPFKPSGSKDHGHPHESYNFRC 300

Query: 980  PPPLGDKSHSDSPPFQAEA-----SPSL----ASLGTNGVHGPSDNHSSSE 1105
            PPPL  K+HSDSPPFQA A      P L       GT G H P  +HSS E
Sbjct: 301  PPPLEHKNHSDSPPFQARAPLPFPPPGLRCPHPPFGTKGNHRPPHDHSSDE 351



 Score = 89.7 bits (221), Expect = 8e-18
 Identities = 50/114 (43%), Positives = 58/114 (50%)
 Frame = +2

Query: 1394 DFHDYGXXXXXXXXXXXXXXXXXXXXXXXXXSEERGPGKKHFPFHGREIGYVHRLPPLKK 1573
            DF+D+G                         S+ERGPGK HF F+ R  GY+HRLP LKK
Sbjct: 428  DFYDHGPCDPPPHRQDPQDHHRQGRDPPPRHSKERGPGKGHFRFYWRPTGYIHRLPSLKK 487

Query: 1574 GEVLPLSEANFPSFLLPHHKPPTARDSAPSLNQPLKSCSGNIQGVNFHIRSKFF 1735
            GEVLPL EANFPSF LP+H  P   +         +SC G       HI SKFF
Sbjct: 488  GEVLPLPEANFPSFSLPNHNNPLQPEIQAFPQSASESCPGTFNIKFLHI-SKFF 540


>ref|XP_002684071.1| PREDICTED: histidine-rich glycoprotein-like [Bos taurus].
          Length = 184

 Score =  256 bits (654), Expect = 5e-68
 Identities = 130/182 (71%), Positives = 142/182 (78%)
 Frame = +2

Query: 89  MRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAH 268
           M++L A  L ILLIT QCS AV+PTGCD  EPVA +ALDLINKGRWDGYLF+LL+VADAH
Sbjct: 1   MKVLTAALLSILLITQQCSCAVNPTGCDAVEPVAVRALDLINKGRWDGYLFQLLRVADAH 60

Query: 269 LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQ 448
           LDK ES AVYYLVL VKESDCPVLSRKHWDDCE  VS RPS+ VIGQCKVIA T L G +
Sbjct: 61  LDKVESIAVYYLVLDVKESDCPVLSRKHWDDCELNVSRRPSETVIGQCKVIAITLLAGPE 120

Query: 449 DLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRV 628
           DLRVN FNCTTSS SS L NT DSPVL DFFEDTE YRK+A + LE      S F+   +
Sbjct: 121 DLRVNDFNCTTSSVSSALTNTIDSPVLFDFFEDTELYRKQAEKALENSPSSRSQFSQLLI 180

Query: 629 DK 634
            K
Sbjct: 181 AK 182


>ref|NP_001029390.1| fetuin-B precursor [Bos taurus].
          Length = 387

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
 Frame = +2

Query: 185 VARKALDLINKGRWDGYLFELLQVADAHLDKSEST--AVYYLVLHVKESDCPVLSRKHWD 358
           +A   L  IN+ R DGY+  L +V+DA   + E+   +++Y  L V E+ C VLSR  W 
Sbjct: 44  IANDILQDINRDRKDGYVLSLNRVSDAREHRQEAGLGSLFYFTLDVLETGCHVLSRTSWK 103

Query: 359 DCEPAVSTRPSDIVIGQCKVIATTCLDGSQDLRVNGFNCTTS--SASSVLANTKDSPVLI 532
           +CE  +     + V GQCK I     +  +   +  +NCT    S S+++    D P   
Sbjct: 104 NCEVRIF---HESVYGQCKAIFYINKE-KRIFYLPAYNCTLRPVSQSAIIMTCPDCPSTS 159

Query: 533 DFFEDTEPYRKEANQTLEKYKREN 604
            +      + + A ++L KY  E+
Sbjct: 160 PYDLSNPRFMETATESLAKYNSES 183


>ref|NP_001192684.1| peroxisome proliferator-activated receptor gamma coactivator-related
            protein 1 [Bos taurus].
          Length = 1666

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
 Frame = +3

Query: 1134 DAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTI-----PMGPLLMDTIPM 1298
            D  P+DP+L +       L++ +P DP+L DT    P ++  I     P+ P+L+ ++ +
Sbjct: 604  DTEPVDPVLTNIASANSELVEPLPADPVLADTAAADPTVVVPISDNLSPVDPVLVKSVQV 663

Query: 1299 DPLLMDAIPMDPLLMDTIPMDP 1364
            D +  D  P+DP+L+ + P DP
Sbjct: 664  DSVPNDLSPVDPVLVKSRPTDP 685



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
 Frame = +3

Query: 1134 DAIPMDPLLMDA--IPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTI----- 1292
            D +P+D L  D+  +  GP   D  P+DP+L +       L++ +P  P+L DT      
Sbjct: 582  DPMPLDSLEADSTVVDPGPTATDTEPVDPVLTNIASANSELVEPLPADPVLADTAAADPT 641

Query: 1293 ----------PMDPLLMDAIPMDPLLMDTIPMDPLLIDTIP 1385
                      P+DP+L+ ++ +D +  D  P+DP+L+ + P
Sbjct: 642  VVVPISDNLSPVDPVLVKSVQVDSVPNDLSPVDPVLVKSRP 682



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
 Frame = +3

Query: 1134 DAIPMDPLLMDAIPMGPL-----LMDAIPMDPLLMDT-------IPMGPLLMDTIPMGPL 1277
            D + + P L+D I   P+     L+D+   DP+ +D+       +  GP   DT P+ P+
Sbjct: 552  DPVDLCPSLVDPIQANPVSTHLSLVDSAQADPMPLDSLEADSTVVDPGPTATDTEPVDPV 611

Query: 1278 LMDTIPMDPLLMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPV 1418
            L +    +  L++ +P DP+L DT   DP ++  +P++     +DPV
Sbjct: 612  LTNIASANSELVEPLPADPVLADTAAADPTVV--VPISDNLSPVDPV 656



 Score = 49.7 bits (117), Expect = 9e-06
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
 Frame = +3

Query: 1128 LMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPL 1307
            L+D+   DP+ +D++     ++D     P   DT P+ P+L +       L++ +P DP+
Sbjct: 575  LVDSAQADPMPLDSLEADSTVVDP---GPTATDTEPVDPVLTNIASANSELVEPLPADPV 631

Query: 1308 LMDAIPMDPLLMDTI-----PMDPLLIDTIPMAMISMTMDPVTHHPIAKIPKTTIAGAMA 1472
            L D    DP ++  I     P+DP+L+ ++ +  +   + PV    +   P     GA++
Sbjct: 632  LADTAAADPTVVVPISDNLSPVDPVLVKSVQVDSVPNDLSPVDPVLVKSRPTDPRRGAVS 691


>ref|XP_002698496.1| PREDICTED: peroxisome proliferator-activated receptor gamma
            coactivator 1-alpha-like [Bos taurus].
          Length = 1666

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
 Frame = +3

Query: 1134 DAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTI-----PMGPLLMDTIPM 1298
            D  P+DP+L +       L++ +P DP+L DT    P ++  I     P+ P+L+ ++ +
Sbjct: 604  DTEPVDPVLTNIASANSELVEPLPADPVLADTAAADPTVVVPISDNLSPVDPVLVKSVQV 663

Query: 1299 DPLLMDAIPMDPLLMDTIPMDP 1364
            D +  D  P+DP+L+ + P DP
Sbjct: 664  DSVPNDLSPVDPVLVKSRPTDP 685



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
 Frame = +3

Query: 1134 DAIPMDPLLMDA--IPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTI----- 1292
            D +P+D L  D+  +  GP   D  P+DP+L +       L++ +P  P+L DT      
Sbjct: 582  DPMPLDSLEADSTVVDPGPTATDTEPVDPVLTNIASANSELVEPLPADPVLADTAAADPT 641

Query: 1293 ----------PMDPLLMDAIPMDPLLMDTIPMDPLLIDTIP 1385
                      P+DP+L+ ++ +D +  D  P+DP+L+ + P
Sbjct: 642  VVVPISDNLSPVDPVLVKSVQVDSVPNDLSPVDPVLVKSRP 682



 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
 Frame = +3

Query: 1134 DAIPMDPLLMDAIPMGPL-----LMDAIPMDPLLMDT-------IPMGPLLMDTIPMGPL 1277
            D + + P L+D I   P+     L+D+   DP+ +D+       +  GP   DT P+ P+
Sbjct: 552  DPVDLCPSLVDPIQANPVSTHLSLVDSAQADPMPLDSLEADSTVVDPGPTATDTEPVDPV 611

Query: 1278 LMDTIPMDPLLMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPV 1418
            L +    +  L++ +P DP+L DT   DP ++  +P++     +DPV
Sbjct: 612  LTNIASANSELVEPLPADPVLADTAAADPTVV--VPISDNLSPVDPV 656



 Score = 49.7 bits (117), Expect = 9e-06
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
 Frame = +3

Query: 1128 LMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPL 1307
            L+D+   DP+ +D++     ++D     P   DT P+ P+L +       L++ +P DP+
Sbjct: 575  LVDSAQADPMPLDSLEADSTVVDP---GPTATDTEPVDPVLTNIASANSELVEPLPADPV 631

Query: 1308 LMDAIPMDPLLMDTI-----PMDPLLIDTIPMAMISMTMDPVTHHPIAKIPKTTIAGAMA 1472
            L D    DP ++  I     P+DP+L+ ++ +  +   + PV    +   P     GA++
Sbjct: 632  LADTAAADPTVVVPISDNLSPVDPVLVKSVQVDSVPNDLSPVDPVLVKSRPTDPRRGAVS 691


>ref|NP_001032717.1| P-selectin glycoprotein ligand 1 [Bos taurus].
          Length = 427

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
 Frame = +3

Query: 1128 LMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPL 1307
            L +A+  +P   +A+   P L +A+  +P L + +   P   +++   P + +T+P +P 
Sbjct: 185  LTEALSTEPAATEALSTEPRLTEALSTEPRLTEALSTEPAATESLSTEPKITETLPTEPA 244

Query: 1308 LMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAK-IPKTTIAGA 1466
              +A   +P  +  +P DP  ++ +P    + T    T  P+A   PK T   A
Sbjct: 245  TTEAPFREPTTIPALPTDPTTVEALP-TRTATTRGLTTALPVASDTPKGTTVAA 297


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,603,935
Number of extensions: 1627923
Number of successful extensions: 5529
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5431
Number of HSP's successfully gapped: 13
Length of query: 625
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 517
Effective length of database: 14,107,870
Effective search space: 7293768790
Effective search space used: 7293768790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012185

Animal-Genome cDNA 20110601C-012185


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012185
         (1877 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_862739.1| PREDICTED: similar to PGC-1 related co-activato...    60   9e-09
Alignment   gi|XP_534998.2| PREDICTED: similar to PGC-1 related co-activato...    60   9e-09
Alignment   gi|XP_535835.2| PREDICTED: similar to Fetuin-B precursor (IRL68...    59   2e-08

>ref|XP_862739.1| PREDICTED: similar to PGC-1 related co-activator isoform 2 [Canis
            familiaris].
          Length = 1540

 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 31/106 (29%), Positives = 56/106 (52%)
 Frame = +3

Query: 1125 LLMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDP 1304
            +L D +P+DP L+D     P L+ ++P DP+L+D +      +D   + P+  D  P DP
Sbjct: 473  VLADPVPVDPALVDLASANPELVVSLPADPVLIDPVLADSAEIDPTVVVPISDDLPPGDP 532

Query: 1305 LLMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAKI 1442
            +  ++ P+D +  D  P+DP+L+ + P       M  V  +P  ++
Sbjct: 533  VPANSAPVDSVPSDLAPVDPVLVKSRPSDPRRGAMSSVQGNPAPRL 578



 Score = 57.4 bits (137), Expect = 5e-08
 Identities = 31/111 (27%), Positives = 56/111 (50%)
 Frame = +3

Query: 1140 IPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPLLMDA 1319
            +P+D +  D   + P+L D +P+DP L+D     P L+ ++P  P+L+D +  D   +D 
Sbjct: 458  MPLDAVETDPTEVHPVLADPVPVDPALVDLASANPELVVSLPADPVLIDPVLADSAEIDP 517

Query: 1320 IPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAKIPKTTIAGAMA 1472
              + P+  D  P DP+  ++ P+  +   + PV    +   P     GAM+
Sbjct: 518  TVVVPISDDLPPGDPVPANSAPVDSVPSDLAPVDPVLVKSRPSDPRRGAMS 568


>ref|XP_534998.2| PREDICTED: similar to PGC-1 related co-activator isoform 1 [Canis
            familiaris].
          Length = 1662

 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 31/106 (29%), Positives = 56/106 (52%)
 Frame = +3

Query: 1125 LLMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDP 1304
            +L D +P+DP L+D     P L+ ++P DP+L+D +      +D   + P+  D  P DP
Sbjct: 593  VLADPVPVDPALVDLASANPELVVSLPADPVLIDPVLADSAEIDPTVVVPISDDLPPGDP 652

Query: 1305 LLMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAKI 1442
            +  ++ P+D +  D  P+DP+L+ + P       M  V  +P  ++
Sbjct: 653  VPANSAPVDSVPSDLAPVDPVLVKSRPSDPRRGAMSSVQGNPAPRL 698



 Score = 57.4 bits (137), Expect = 5e-08
 Identities = 31/111 (27%), Positives = 56/111 (50%)
 Frame = +3

Query: 1140 IPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPLLMDA 1319
            +P+D +  D   + P+L D +P+DP L+D     P L+ ++P  P+L+D +  D   +D 
Sbjct: 578  MPLDAVETDPTEVHPVLADPVPVDPALVDLASANPELVVSLPADPVLIDPVLADSAEIDP 637

Query: 1320 IPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAKIPKTTIAGAMA 1472
              + P+  D  P DP+  ++ P+  +   + PV    +   P     GAM+
Sbjct: 638  TVVVPISDDLPPGDPVPANSAPVDSVPSDLAPVDPVLVKSRPSDPRRGAMS 688


>ref|XP_535835.2| PREDICTED: similar to Fetuin-B precursor (IRL685) (16G2) [Canis
           familiaris].
          Length = 385

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
 Frame = +2

Query: 185 VARKALDLINKGRWDGYLFELLQVADAHLDKSEST-AVYYLVLHVKESDCPVLSRKHWDD 361
           VA  AL  IN+ R DGY+  L +V+D    +  +  +++YL L V E+DC VLSRK W D
Sbjct: 43  VAGFALQDINRDRKDGYVLSLNRVSDVREHRQVAMGSLFYLTLDVLETDCHVLSRKPWKD 102

Query: 362 CEPAVSTRPSDIVIGQCKVIATTCLDGSQDLRVNGFNCTTSSASSVLANTK----DSPVL 529
           C         + V GQCK +      G + L +  +NCT    S    + +     SP  
Sbjct: 103 CG---VRHLHESVYGQCKALFYVNKPG-RVLYLPAYNCTLRPVSRRRIHNRCPDCPSPRA 158

Query: 530 IDFFEDTEPYRKEANQTLEKYKRENS 607
            D  + T    + A ++L KY  E++
Sbjct: 159 TDLSDPT--VLEAALESLAKYNSEST 182


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,111,085
Number of extensions: 1653158
Number of successful extensions: 5931
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5846
Number of HSP's successfully gapped: 5
Length of query: 625
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 516
Effective length of database: 15,240,880
Effective search space: 7864294080
Effective search space used: 7864294080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012185
         (1877 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003132628.2| PREDICTED: histidine-rich glycoprotein [Sus ...   682   0.0  
Alignment   gi|XP_003133217.1| PREDICTED: peroxisome proliferator-activated...    54   4e-07

>ref|XP_003132628.2| PREDICTED: histidine-rich glycoprotein [Sus scrofa].
          Length = 518

 Score =  682 bits (1759), Expect = 0.0
 Identities = 327/339 (96%), Positives = 327/339 (96%)
 Frame = +2

Query: 89   MRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAH 268
            MRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAH
Sbjct: 1    MRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAH 60

Query: 269  LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQ 448
            LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQ
Sbjct: 61   LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQ 120

Query: 449  DLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRV 628
            DLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRV
Sbjct: 121  DLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRV 180

Query: 629  DKXXXXXXXXXXXXTNYYVDFSVRNCSSRWRSPTFGFCRADFINDAEASDLENPEDIVIN 808
            DK            TNYYVDFSVRNCSSRWRSPTFGFCRADFINDAEASDLENPEDIVIN
Sbjct: 181  DKVERVARVRGGERTNYYVDFSVRNCSSRWRSPTFGFCRADFINDAEASDLENPEDIVIN 240

Query: 809  CEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHHDSHKPHKFGCPPP 988
            CEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHHDSHKPHKFGCPPP
Sbjct: 241  CEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHHDSHKPHKFGCPPP 300

Query: 989  LGDKSHSDSPPFQAEASPSLASLGTNGVHGPSDNHSSSE 1105
            LGDKSHSDSPPFQAEASPSLASLGTNGVHGPSDNHSSSE
Sbjct: 301  LGDKSHSDSPPFQAEASPSLASLGTNGVHGPSDNHSSSE 339



 Score =  123 bits (309), Expect = 3e-28
 Identities = 65/114 (57%), Positives = 69/114 (60%)
 Frame = +2

Query: 1394 DFHDYGXXXXXXXXXXXXXXXXXXXXXXXXXSEERGPGKKHFPFHGREIGYVHRLPPLKK 1573
            DFHDYG                         SEERGPGKKHFPFHGREIGYVHRLPPLKK
Sbjct: 401  DFHDYGPCDPPPHSQDPQDHHRWGHGPPPRHSEERGPGKKHFPFHGREIGYVHRLPPLKK 460

Query: 1574 GEVLPLSEANFPSFLLPHHKPPTARDSAPSLNQPLKSCSGNIQGVNFHIRSKFF 1735
            GEVLPL EANFPSFLLPHHK P   +  P      +SC G  +G   H+ SKFF
Sbjct: 461  GEVLPLPEANFPSFLLPHHK-PLQPEIQPFPQSASESCPGTFRGEFSHL-SKFF 512


>ref|XP_003133217.1| PREDICTED: peroxisome proliferator-activated receptor gamma
            coactivator-related protein 1 [Sus scrofa].
          Length = 1662

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 25/86 (29%), Positives = 49/86 (56%)
 Frame = +3

Query: 1128 LMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPL 1307
            ++D++  DP+ +D       L+DA+  D +L D     P+ +D + + P+  D  P+DP+
Sbjct: 595  VVDSVVADPVPVDLASANSELVDALSADSVLNDPALTDPVAIDPVVVVPISDDLPPVDPV 654

Query: 1308 LMDAIPMDPLLMDTIPMDPLLIDTIP 1385
            L + + +D +  D  P+DP+L+ + P
Sbjct: 655  LANPVQVDSVSSDLAPVDPVLVKSRP 680



 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 28/125 (22%), Positives = 62/125 (49%)
 Frame = +3

Query: 1128 LMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPL 1307
            ++D+   DP+ +D++     ++D++  DP+ +D       L+D +    +L D    DP+
Sbjct: 575  VVDSAQADPMPLDSVEADSTVVDSVVADPVPVDLASANSELVDALSADSVLNDPALTDPV 634

Query: 1308 LMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAKIPKTTIAGAMAHHLGT 1487
             +D + + P+  D  P+DP+L + + +  +S  + PV    +   P     GA++   G+
Sbjct: 635  AIDPVVVVPISDDLPPVDPVLANPVQVDSVSSDLAPVDPVLVKSRPTDPRRGAVSSAQGS 694

Query: 1488 QKKEV 1502
               ++
Sbjct: 695  SPPQL 699


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,221,702
Number of extensions: 1088184
Number of successful extensions: 3439
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3368
Number of HSP's successfully gapped: 4
Length of query: 625
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 520
Effective length of database: 8,729,747
Effective search space: 4539468440
Effective search space used: 4539468440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012185
         (1877 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_444406.2| histidine-rich glycoprotein [Mus musculus].          344   2e-94
Alignment   gi|NP_001077374.1| fetuin-B isoform 3 [Mus musculus].                 62   2e-09
Alignment   gi|NP_067539.1| fetuin-B isoform 1 [Mus musculus].                    62   2e-09

>ref|NP_444406.2| histidine-rich glycoprotein [Mus musculus].
          Length = 536

 Score =  344 bits (882), Expect = 2e-94
 Identities = 192/357 (53%), Positives = 230/357 (64%), Gaps = 8/357 (2%)
 Frame = +2

Query: 59   SKAWFSLFNKMRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYL 238
            S+ WFS    M++L      +LL+TLQCS A+SPT CD +EP+A K LDLINKGR  GY+
Sbjct: 5    SQGWFST---MKVLTTA---LLLVTLQCSHALSPTNCDASEPLAEKVLDLINKGRRSGYV 58

Query: 239  FELLQVADAHLDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKV 418
            FELL+V+DAHLD++ +  VYYL L V ESDC VLS K  DDC P  S   S+IVIGQCKV
Sbjct: 59   FELLRVSDAHLDRAGTATVYYLALDVIESDCWVLSTKAQDDCLP--SRWQSEIVIGQCKV 116

Query: 419  IATTCLDGSQDLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKR 598
            IAT   + SQDL VNG+NCTTSS SS L NTKDSPVL+DFFED+E YRK+A + L+KYK 
Sbjct: 117  IATRYSNESQDLSVNGYNCTTSSVSSALRNTKDSPVLLDFFEDSELYRKQARKALDKYKT 176

Query: 599  ENSDFASFRVDKXXXXXXXXXXXXTNYYVDFSVRNCSSRW--RSP-TFGFCRADFINDAE 769
            +N DFASFRV++            TNYYV+FS+RNCS++   RSP  FGFCRA      E
Sbjct: 177  DNGDFASFRVERAERVIRARGGERTNYYVEFSMRNCSTQHFPRSPLVFGFCRALLSYSIE 236

Query: 770  ASDLENPEDIVINCEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHH 949
             SDLE P+ I INCEVFN +DH++ S  + H G       HE     +   K   SRDHH
Sbjct: 237  TSDLETPDSIDINCEVFNIEDHKDTSDMKPHWG-------HERPLCDKHLCKLSGSRDHH 289

Query: 950  DSHKPHKFGCPPPLGDKSHSDSPPFQAEASPSL-----ASLGTNGVHGPSDNHSSSE 1105
             +HK  K GCPPP   K +SD P  Q  A P L        G N  H PS NHS +E
Sbjct: 290  HTHKTDKLGCPPPPEGKDNSDRPRLQEGALPQLPPGYPPHSGANRTHRPSYNHSCNE 346



 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 47/114 (41%), Positives = 55/114 (48%)
 Frame = +2

Query: 1394 DFHDYGXXXXXXXXXXXXXXXXXXXXXXXXXSEERGPGKKHFPFHGREIGYVHRLPPLKK 1573
            DF DYG                         S +RGPGK  FPFH ++IGYV+RLPPL  
Sbjct: 418  DFLDYGPCDPPSNSQELKGQYHRGYGPPHGHSRKRGPGKGLFPFHHQQIGYVYRLPPLNI 477

Query: 1574 GEVLPLSEANFPSFLLPHHKPPTARDSAPSLNQPLKSCSGNIQGVNFHIRSKFF 1735
            GEVL L EANFPSF LP+       +  P      +SC G  +   F   SKFF
Sbjct: 478  GEVLTLPEANFPSFSLPNCNRSLQPEIQPFPQTASRSCPGKFES-EFPQISKFF 530


>ref|NP_001077374.1| fetuin-B isoform 3 [Mus musculus].
          Length = 388

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
 Frame = +2

Query: 158 PTGCDDAE--PVARKALDLINKGRWDGYLFELLQVADAHLDKSEST-AVYYLVLHVKESD 328
           P GC+D+E   VA  AL  IN+ + DGY+  L +V D      E   +++YL L V E+D
Sbjct: 36  PLGCNDSEVLAVAGFALQNINRDQKDGYMLSLNRVHDVREHYQEDMGSLFYLTLDVLETD 95

Query: 329 CPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQDLRVNGFNCTTSSASSVLAN 508
           C VLSRK   DC+P +     + V GQCK +        + L +  +NCT    S    +
Sbjct: 96  CHVLSRKAQKDCKPRMF---YESVYGQCKAM-FHINKPRRVLYLPAYNCTLRPVSKRKTH 151

Query: 509 T--KDSPVLIDFFEDTEPYRKEANQTLEKYKREN 604
           T   D P  ID    +    + A ++L K+  ++
Sbjct: 152 TTCPDCPSPIDLSNPSA--LEAATESLAKFNSKS 183


>ref|NP_067539.1| fetuin-B isoform 1 [Mus musculus].
          Length = 388

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
 Frame = +2

Query: 158 PTGCDDAE--PVARKALDLINKGRWDGYLFELLQVADAHLDKSEST-AVYYLVLHVKESD 328
           P GC+D+E   VA  AL  IN+ + DGY+  L +V D      E   +++YL L V E+D
Sbjct: 36  PLGCNDSEVLAVAGFALQNINRDQKDGYMLSLNRVHDVREHYQEDMGSLFYLTLDVLETD 95

Query: 329 CPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQDLRVNGFNCTTSSASSVLAN 508
           C VLSRK   DC+P +     + V GQCK +        + L +  +NCT    S    +
Sbjct: 96  CHVLSRKAQKDCKPRMF---YESVYGQCKAM-FHINKPRRVLYLPAYNCTLRPVSKRKTH 151

Query: 509 T--KDSPVLIDFFEDTEPYRKEANQTLEKYKREN 604
           T   D P  ID    +    + A ++L K+  ++
Sbjct: 152 TTCPDCPSPIDLSNPSA--LEAATESLAKFNSKS 183


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,133,962
Number of extensions: 1393631
Number of successful extensions: 4603
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4528
Number of HSP's successfully gapped: 4
Length of query: 625
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 518
Effective length of database: 12,403,707
Effective search space: 6425120226
Effective search space used: 6425120226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012185
         (1877 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000403.1| histidine-rich glycoprotein precursor [Homo sap...   399   e-111
Alignment   gi|NP_055190.2| fetuin-B precursor [Homo sapiens].                    71   4e-12

>ref|NP_000403.1| histidine-rich glycoprotein precursor [Homo sapiens].
          Length = 525

 Score =  399 bits (1026), Expect = e-111
 Identities = 209/348 (60%), Positives = 241/348 (69%), Gaps = 12/348 (3%)
 Frame = +2

Query: 98   LNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAHLDK 277
            + A+   +LLITLQ S AVSPT C   EP A KALDLINK R DGYLF+LL++ADAHLD+
Sbjct: 1    MKALIAALLLITLQYSCAVSPTDCSAVEPEAEKALDLINKRRRDGYLFQLLRIADAHLDR 60

Query: 278  SESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQDLR 457
             E+T VYYLVL V+ESDC VLSRK+W+DCEP  S RPS+IVIGQCKVIAT     SQDLR
Sbjct: 61   VENTTVYYLVLDVQESDCSVLSRKYWNDCEPPDSRRPSEIVIGQCKVIATRHSHESQDLR 120

Query: 458  VNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRVDKX 637
            V  FNCTTSS SS LANTKDSPVLIDFFEDTE YRK+AN+ LEKYK EN DFASFRVD+ 
Sbjct: 121  VIDFNCTTSSVSSALANTKDSPVLIDFFEDTERYRKQANKALEKYKEENDDFASFRVDRI 180

Query: 638  XXXXXXXXXXXTNYYVDFSVRNCSSRW--RSP-TFGFCRADFINDAEASDLENPEDIVIN 808
                       T Y+VDFSVRNC      R P  FGFCRAD   D EA DLE+P+++VIN
Sbjct: 181  ERVARVRGGEGTGYFVDFSVRNCPRHHFPRHPNVFGFCRADLFYDVEALDLESPKNLVIN 240

Query: 809  CEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHHDSHKPHKFGCPPP 988
            CEVF+ ++H NI+G   HLGH FH G HE S   +PP KP  SRDHH  HKPH+ G PPP
Sbjct: 241  CEVFDPQEHENINGVPPHLGHPFHWGGHERSSTTKPPFKPHGSRDHHHPHKPHEHGPPPP 300

Query: 989  LGDKSHSDSPPFQAEASPSL---------ASLGTNGVHGPSDNHSSSE 1105
              ++ HS  PP      P L         A+ GTNG    S N++SS+
Sbjct: 301  PDERDHSHGPPLPQGPPPLLPMSCSSCQHATFGTNGAQRHSHNNNSSD 348



 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 46/80 (57%), Positives = 52/80 (65%)
 Frame = +2

Query: 1496 RGPGKKHFPFHGREIGYVHRLPPLKKGEVLPLSEANFPSFLLPHHKPPTARDSAPSLNQP 1675
            RGPGK   PFH R+IG V+RLPPL+KGEVLPL EANFPSF LPHHK P   D+ P     
Sbjct: 441  RGPGKGPRPFHCRQIGSVYRLPPLRKGEVLPLPEANFPSFPLPHHKHPLKPDNQPFPQSV 500

Query: 1676 LKSCSGNIQGVNFHIRSKFF 1735
             +SC G  +   F   S FF
Sbjct: 501  SESCPGKFKS-GFPQVSMFF 519


>ref|NP_055190.2| fetuin-B precursor [Homo sapiens].
          Length = 382

 Score = 70.9 bits (172), Expect = 4e-12
 Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
 Frame = +2

Query: 107 VPLFILLITLQCSR------AVSPT-----GCDDAE--PVARKALDLINKGRWDGYLFEL 247
           +PL + ++ L C        A++P+     GC+D++   VA  AL  INK R DGY+  L
Sbjct: 5   LPLALCILVLCCGAMSPPQLALNPSALLSRGCNDSDVLAVAGFALRDINKDRKDGYVLRL 64

Query: 248 LQVADAH-LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIA 424
            +V DA    +    +++YL L V E+DC VL +K W DC   +     + V GQCK I 
Sbjct: 65  NRVNDAQEYRRGGLGSLFYLTLDVLETDCHVLRKKAWQDCGMRIF---FESVYGQCKAI- 120

Query: 425 TTCLDGSQDLRVNGFNCTTS--SASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKR 598
               + S+ L +  +NCT    S   +     D P  I          + A ++L KY  
Sbjct: 121 FYMNNPSRVLYLAAYNCTLRPVSKKKIYMTCPDCPSSIPTDSSNHQVLEAATESLAKYNN 180

Query: 599 ENS--DFASFRVDK 634
           EN+   ++ F+V +
Sbjct: 181 ENTSKQYSLFKVTR 194


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,202,123
Number of extensions: 1637277
Number of successful extensions: 5551
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5446
Number of HSP's successfully gapped: 3
Length of query: 625
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 516
Effective length of database: 14,704,088
Effective search space: 7587309408
Effective search space used: 7587309408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012185
         (1877 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                         620   e-175

>Sscrofa_Chr13 
||          Length = 218635234

 Score =  620 bits (313), Expect = e-175
 Identities = 313/313 (100%)
 Strand = Plus / Plus

                                                                             
Query: 828       aggatcatagaaacatcagtggtgggcagaagcatttgggccatcgcttccactctggcg 887
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905325 aggatcatagaaacatcagtggtgggcagaagcatttgggccatcgcttccactctggcg 133905384

                                                                             
Query: 888       agcatgagcattctcctgctggcaggcctccacataagcccggtagatctcgagatcacc 947
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905385 agcatgagcattctcctgctggcaggcctccacataagcccggtagatctcgagatcacc 133905444

                                                                             
Query: 948       atgattcccacaagccacataaatttgggtgcccacctcctctaggagacaaaagtcact 1007
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905445 atgattcccacaagccacataaatttgggtgcccacctcctctaggagacaaaagtcact 133905504

                                                                             
Query: 1008      cagacagtccaccatttcaagcagaagcttctccatcattggcctctttaggcaccaatg 1067
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905505 cagacagtccaccatttcaagcagaagcttctccatcattggcctctttaggcaccaatg 133905564

                                                                             
Query: 1068      gggtccatggaccctcagataatcatagttccagtgagcatcatctcccaggacatcctc 1127
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905565 gggtccatggaccctcagataatcatagttccagtgagcatcatctcccaggacatcctc 133905624

                              
Query: 1128      ctcatggacgcca 1140
                 |||||||||||||
Sbjct: 133905625 ctcatggacgcca 133905637



 Score =  559 bits (282), Expect = e-156
 Identities = 326/334 (97%), Gaps = 5/334 (1%)
 Strand = Plus / Plus

                                                                             
Query: 1387      tggccatgatttccatgactatggaccctgtgacccaccaccccatagccaagatcccca 1446
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905884 tggccatgatttccatgactatggaccctgtgacccaccaccccatagccaagatcccca 133905943

                                                                             
Query: 1447      agaccaccatcgctggggccatggcccaccacctaggcactcagaagaaagaggtccagg 1506
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905944 agaccaccatcgctggggccatggcccaccacctaggcactcagaagaaagaggtccagg 133906003

                                                                             
Query: 1507      taaaaaacactttcccttccatgggagagagattggatatgttcaccgactcccaccatt 1566
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133906004 taaaaaacactttcccttccatgggagagagattggatatgttcaccgactcccaccatt 133906063

                                                                             
Query: 1567      aaagaaaggtgaggttcttcctctttccgaagccaattttcccagtttcttgttgccaca 1626
                 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 133906064 aaagaaaggtgaggttcttcctcttcccgaagccaattttcccagtttcttgttgccaca 133906123

                                                                             
Query: 1627      ccacaagccccctacagccagagattcagccccttccctcaatcagcctctgaaatcatg 1686
                 ||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 133906124 ccacaag-cccctacagccagagattcag-cccttccctcaatcagcctctg-aatcatg 133906180

                                                   
Query: 1687      ttcagggaacattcaaggggtgaattttcacatc 1720
                 | ||||| |||||| |||||||| ||||||||||
Sbjct: 133906181 tccaggg-acattc-aggggtgagttttcacatc 133906212



 Score =  557 bits (281), Expect = e-156
 Identities = 281/281 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         ttgtgcatgtgtgtgtttaagaaaatctgtatataaacttctccgccgtggtatccagag 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133895239 ttgtgcatgtgtgtgtttaagaaaatctgtatataaacttctccgccgtggtatccagag 133895298

                                                                             
Query: 61        caaggcatggttttcactttttaacaaaatgaggttactcaatgcagtgccgcttttcat 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133895299 caaggcatggttttcactttttaacaaaatgaggttactcaatgcagtgccgcttttcat 133895358

                                                                             
Query: 121       ccttttgatcacattgcagtgttcccgtgctgtgagtcccacaggctgtgacgatgctga 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133895359 ccttttgatcacattgcagtgttcccgtgctgtgagtcccacaggctgtgacgatgctga 133895418

                                                                             
Query: 181       gcctgtggccagaaaagctctagacctgatcaataaaggacgatgggacggctacctttt 240
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133895419 gcctgtggccagaaaagctctagacctgatcaataaaggacgatgggacggctacctttt 133895478

                                                          
Query: 241       cgagttgctgcaggttgctgatgcccacttggacaaatcgg 281
                 |||||||||||||||||||||||||||||||||||||||||
Sbjct: 133895479 cgagttgctgcaggttgctgatgcccacttggacaaatcgg 133895519



 Score =  333 bits (168), Expect = 2e-88
 Identities = 168/168 (100%)
 Strand = Plus / Plus

                                                                             
Query: 488       gcctcttcagtactggccaatacgaaagacagcccagtactcatcgatttctttgaggat 547
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133900678 gcctcttcagtactggccaatacgaaagacagcccagtactcatcgatttctttgaggat 133900737

                                                                             
Query: 548       acggagccctacagaaaagaagctaaccaaaccttggaaaagtacaaaagggagaacagt 607
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133900738 acggagccctacagaaaagaagctaaccaaaccttggaaaagtacaaaagggagaacagt 133900797

                                                                 
Query: 608       gactttgcctctttccgagtggacaaagtggagagggttgcaagagtg 655
                 ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133900798 gactttgcctctttccgagtggacaaagtggagagggttgcaagagtg 133900845



 Score =  230 bits (116), Expect = 2e-57
 Identities = 119/120 (99%)
 Strand = Plus / Plus

                                                                             
Query: 280       ggaatctaccgctgtctattatttagtcttgcatgtaaaagaatcagactgtccagtcct 339
                 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133897762 ggaatctaccgctgtgtattatttagtcttgcatgtaaaagaatcagactgtccagtcct 133897821

                                                                             
Query: 340       atccaggaagcactgggatgactgtgagccagctgtttccacacgtccatctgatatagt 399
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133897822 atccaggaagcactgggatgactgtgagccagctgtttccacacgtccatctgatatagt 133897881



 Score =  204 bits (103), Expect = 1e-49
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                             
Query: 728       acctttggattctgtagagcagatttcatcaatgatgcagaagcctctgacttggaaaac 787
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133903961 acctttggattctgtagagcagatttcatcaatgatgcagaagcctctgacttggaaaac 133904020

                                                            
Query: 788       ccagaagatattgtcataaactgtgaagtcttcaacttcaagg 830
                 |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133904021 ccagaagatattgtcataaactgtgaagtcttcaacttcaagg 133904063



 Score =  180 bits (91), Expect = 2e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                             
Query: 398       gttattggacaatgtaaggtaatagctacaacatgtttggatggatctcaggatcttaga 457
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133898884 gttattggacaatgtaaggtaatagctacaacatgtttggatggatctcaggatcttaga 133898943

                                                
Query: 458       gtgaatggctttaattgcaccacaagttctg 488
                 |||||||||||||||||||||||||||||||
Sbjct: 133898944 gtgaatggctttaattgcaccacaagttctg 133898974



 Score =  145 bits (73), Expect = 1e-31
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                             
Query: 655       gagaggaggggaaagaacgaattactacgtggatttctctgtgaggaactgctccagtcg 714
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133901403 gagaggaggggaaagaacgaattactacgtggatttctctgtgaggaactgctccagtcg 133901462

                              
Query: 715       ctggcgctctcct 727
                 |||||||||||||
Sbjct: 133901463 ctggcgctctcct 133901475


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,198,186
Number of extensions: 313
Number of successful extensions: 313
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 8
Length of query: 1877
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1855
Effective length of database: 2,808,408,574
Effective search space: 5209597904770
Effective search space used: 5209597904770
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)