Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012185
(1877 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776344.1| histidine-rich glycoprotein [Bos taurus]. 454 e-128
Alignment gi|XP_002684071.1| PREDICTED: histidine-rich glycoprotein-like ... 256 5e-68
Alignment gi|NP_001029390.1| fetuin-B precursor [Bos taurus]. 62 1e-09
Alignment gi|NP_001192684.1| peroxisome proliferator-activated receptor g... 51 3e-06
Alignment gi|XP_002698496.1| PREDICTED: peroxisome proliferator-activated... 51 3e-06
Alignment gi|NP_001032717.1| P-selectin glycoprotein ligand 1 [Bos taurus]. 50 7e-06
>ref|NP_776344.1| histidine-rich glycoprotein [Bos taurus].
Length = 546
Score = 454 bits (1169), Expect = e-128
Identities = 234/351 (66%), Positives = 255/351 (72%), Gaps = 12/351 (3%)
Frame = +2
Query: 89 MRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAH 268
M++L A L ILLIT QCS AV+PTGCD EPVA +ALDLINKGRWDGYLF+LL+VADAH
Sbjct: 1 MKVLTAALLSILLITQQCSCAVNPTGCDAVEPVAVRALDLINKGRWDGYLFQLLRVADAH 60
Query: 269 LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQ 448
LDK ES AVYYLVL VKESDCPVLSRKHWDDCE VS RPS+ VIGQCKVIA T L G +
Sbjct: 61 LDKVESIAVYYLVLDVKESDCPVLSRKHWDDCELNVSRRPSETVIGQCKVIAITLLAGPE 120
Query: 449 DLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRV 628
DLRVN FNCTTSS SS L NT DSPVL FFEDTE YRK+A + LEKY+RENSDFA FRV
Sbjct: 121 DLRVNDFNCTTSSVSSALTNTIDSPVLFYFFEDTELYRKQAEKALEKYQRENSDFAPFRV 180
Query: 629 DKXXXXXXXXXXXXTNYYVDFSVRNCSSRW---RSPTFGFCRADFINDAEASDLENPEDI 799
DK T+Y++DFSVRNCSS S FGFCRAD D EASDLE P+DI
Sbjct: 181 DKVKRAMRARGGEGTSYFLDFSVRNCSSHHFPRHSHIFGFCRADLFYDVEASDLETPKDI 240
Query: 800 VINCEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHHDSHKPHKFGC 979
V NCEVFN K+HRN S Q HLG FHSGEHEHSPAGRPP KP S+DH H+ + F C
Sbjct: 241 VTNCEVFNLKEHRNFSAVQHHLGRPFHSGEHEHSPAGRPPFKPSGSKDHGHPHESYNFRC 300
Query: 980 PPPLGDKSHSDSPPFQAEA-----SPSL----ASLGTNGVHGPSDNHSSSE 1105
PPPL K+HSDSPPFQA A P L GT G H P +HSS E
Sbjct: 301 PPPLEHKNHSDSPPFQARAPLPFPPPGLRCPHPPFGTKGNHRPPHDHSSDE 351
Score = 89.7 bits (221), Expect = 8e-18
Identities = 50/114 (43%), Positives = 58/114 (50%)
Frame = +2
Query: 1394 DFHDYGXXXXXXXXXXXXXXXXXXXXXXXXXSEERGPGKKHFPFHGREIGYVHRLPPLKK 1573
DF+D+G S+ERGPGK HF F+ R GY+HRLP LKK
Sbjct: 428 DFYDHGPCDPPPHRQDPQDHHRQGRDPPPRHSKERGPGKGHFRFYWRPTGYIHRLPSLKK 487
Query: 1574 GEVLPLSEANFPSFLLPHHKPPTARDSAPSLNQPLKSCSGNIQGVNFHIRSKFF 1735
GEVLPL EANFPSF LP+H P + +SC G HI SKFF
Sbjct: 488 GEVLPLPEANFPSFSLPNHNNPLQPEIQAFPQSASESCPGTFNIKFLHI-SKFF 540
>ref|XP_002684071.1| PREDICTED: histidine-rich glycoprotein-like [Bos taurus].
Length = 184
Score = 256 bits (654), Expect = 5e-68
Identities = 130/182 (71%), Positives = 142/182 (78%)
Frame = +2
Query: 89 MRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAH 268
M++L A L ILLIT QCS AV+PTGCD EPVA +ALDLINKGRWDGYLF+LL+VADAH
Sbjct: 1 MKVLTAALLSILLITQQCSCAVNPTGCDAVEPVAVRALDLINKGRWDGYLFQLLRVADAH 60
Query: 269 LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQ 448
LDK ES AVYYLVL VKESDCPVLSRKHWDDCE VS RPS+ VIGQCKVIA T L G +
Sbjct: 61 LDKVESIAVYYLVLDVKESDCPVLSRKHWDDCELNVSRRPSETVIGQCKVIAITLLAGPE 120
Query: 449 DLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRV 628
DLRVN FNCTTSS SS L NT DSPVL DFFEDTE YRK+A + LE S F+ +
Sbjct: 121 DLRVNDFNCTTSSVSSALTNTIDSPVLFDFFEDTELYRKQAEKALENSPSSRSQFSQLLI 180
Query: 629 DK 634
K
Sbjct: 181 AK 182
>ref|NP_001029390.1| fetuin-B precursor [Bos taurus].
Length = 387
Score = 62.4 bits (150), Expect = 1e-09
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Frame = +2
Query: 185 VARKALDLINKGRWDGYLFELLQVADAHLDKSEST--AVYYLVLHVKESDCPVLSRKHWD 358
+A L IN+ R DGY+ L +V+DA + E+ +++Y L V E+ C VLSR W
Sbjct: 44 IANDILQDINRDRKDGYVLSLNRVSDAREHRQEAGLGSLFYFTLDVLETGCHVLSRTSWK 103
Query: 359 DCEPAVSTRPSDIVIGQCKVIATTCLDGSQDLRVNGFNCTTS--SASSVLANTKDSPVLI 532
+CE + + V GQCK I + + + +NCT S S+++ D P
Sbjct: 104 NCEVRIF---HESVYGQCKAIFYINKE-KRIFYLPAYNCTLRPVSQSAIIMTCPDCPSTS 159
Query: 533 DFFEDTEPYRKEANQTLEKYKREN 604
+ + + A ++L KY E+
Sbjct: 160 PYDLSNPRFMETATESLAKYNSES 183
>ref|NP_001192684.1| peroxisome proliferator-activated receptor gamma coactivator-related
protein 1 [Bos taurus].
Length = 1666
Score = 51.2 bits (121), Expect = 3e-06
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = +3
Query: 1134 DAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTI-----PMGPLLMDTIPM 1298
D P+DP+L + L++ +P DP+L DT P ++ I P+ P+L+ ++ +
Sbjct: 604 DTEPVDPVLTNIASANSELVEPLPADPVLADTAAADPTVVVPISDNLSPVDPVLVKSVQV 663
Query: 1299 DPLLMDAIPMDPLLMDTIPMDP 1364
D + D P+DP+L+ + P DP
Sbjct: 664 DSVPNDLSPVDPVLVKSRPTDP 685
Score = 50.8 bits (120), Expect = 4e-06
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
Frame = +3
Query: 1134 DAIPMDPLLMDA--IPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTI----- 1292
D +P+D L D+ + GP D P+DP+L + L++ +P P+L DT
Sbjct: 582 DPMPLDSLEADSTVVDPGPTATDTEPVDPVLTNIASANSELVEPLPADPVLADTAAADPT 641
Query: 1293 ----------PMDPLLMDAIPMDPLLMDTIPMDPLLIDTIP 1385
P+DP+L+ ++ +D + D P+DP+L+ + P
Sbjct: 642 VVVPISDNLSPVDPVLVKSVQVDSVPNDLSPVDPVLVKSRP 682
Score = 50.4 bits (119), Expect = 5e-06
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Frame = +3
Query: 1134 DAIPMDPLLMDAIPMGPL-----LMDAIPMDPLLMDT-------IPMGPLLMDTIPMGPL 1277
D + + P L+D I P+ L+D+ DP+ +D+ + GP DT P+ P+
Sbjct: 552 DPVDLCPSLVDPIQANPVSTHLSLVDSAQADPMPLDSLEADSTVVDPGPTATDTEPVDPV 611
Query: 1278 LMDTIPMDPLLMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPV 1418
L + + L++ +P DP+L DT DP ++ +P++ +DPV
Sbjct: 612 LTNIASANSELVEPLPADPVLADTAAADPTVV--VPISDNLSPVDPV 656
Score = 49.7 bits (117), Expect = 9e-06
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Frame = +3
Query: 1128 LMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPL 1307
L+D+ DP+ +D++ ++D P DT P+ P+L + L++ +P DP+
Sbjct: 575 LVDSAQADPMPLDSLEADSTVVDP---GPTATDTEPVDPVLTNIASANSELVEPLPADPV 631
Query: 1308 LMDAIPMDPLLMDTI-----PMDPLLIDTIPMAMISMTMDPVTHHPIAKIPKTTIAGAMA 1472
L D DP ++ I P+DP+L+ ++ + + + PV + P GA++
Sbjct: 632 LADTAAADPTVVVPISDNLSPVDPVLVKSVQVDSVPNDLSPVDPVLVKSRPTDPRRGAVS 691
>ref|XP_002698496.1| PREDICTED: peroxisome proliferator-activated receptor gamma
coactivator 1-alpha-like [Bos taurus].
Length = 1666
Score = 51.2 bits (121), Expect = 3e-06
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = +3
Query: 1134 DAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTI-----PMGPLLMDTIPM 1298
D P+DP+L + L++ +P DP+L DT P ++ I P+ P+L+ ++ +
Sbjct: 604 DTEPVDPVLTNIASANSELVEPLPADPVLADTAAADPTVVVPISDNLSPVDPVLVKSVQV 663
Query: 1299 DPLLMDAIPMDPLLMDTIPMDP 1364
D + D P+DP+L+ + P DP
Sbjct: 664 DSVPNDLSPVDPVLVKSRPTDP 685
Score = 50.8 bits (120), Expect = 4e-06
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
Frame = +3
Query: 1134 DAIPMDPLLMDA--IPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTI----- 1292
D +P+D L D+ + GP D P+DP+L + L++ +P P+L DT
Sbjct: 582 DPMPLDSLEADSTVVDPGPTATDTEPVDPVLTNIASANSELVEPLPADPVLADTAAADPT 641
Query: 1293 ----------PMDPLLMDAIPMDPLLMDTIPMDPLLIDTIP 1385
P+DP+L+ ++ +D + D P+DP+L+ + P
Sbjct: 642 VVVPISDNLSPVDPVLVKSVQVDSVPNDLSPVDPVLVKSRP 682
Score = 50.4 bits (119), Expect = 5e-06
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Frame = +3
Query: 1134 DAIPMDPLLMDAIPMGPL-----LMDAIPMDPLLMDT-------IPMGPLLMDTIPMGPL 1277
D + + P L+D I P+ L+D+ DP+ +D+ + GP DT P+ P+
Sbjct: 552 DPVDLCPSLVDPIQANPVSTHLSLVDSAQADPMPLDSLEADSTVVDPGPTATDTEPVDPV 611
Query: 1278 LMDTIPMDPLLMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPV 1418
L + + L++ +P DP+L DT DP ++ +P++ +DPV
Sbjct: 612 LTNIASANSELVEPLPADPVLADTAAADPTVV--VPISDNLSPVDPV 656
Score = 49.7 bits (117), Expect = 9e-06
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Frame = +3
Query: 1128 LMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPL 1307
L+D+ DP+ +D++ ++D P DT P+ P+L + L++ +P DP+
Sbjct: 575 LVDSAQADPMPLDSLEADSTVVDP---GPTATDTEPVDPVLTNIASANSELVEPLPADPV 631
Query: 1308 LMDAIPMDPLLMDTI-----PMDPLLIDTIPMAMISMTMDPVTHHPIAKIPKTTIAGAMA 1472
L D DP ++ I P+DP+L+ ++ + + + PV + P GA++
Sbjct: 632 LADTAAADPTVVVPISDNLSPVDPVLVKSVQVDSVPNDLSPVDPVLVKSRPTDPRRGAVS 691
>ref|NP_001032717.1| P-selectin glycoprotein ligand 1 [Bos taurus].
Length = 427
Score = 50.1 bits (118), Expect = 7e-06
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Frame = +3
Query: 1128 LMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPL 1307
L +A+ +P +A+ P L +A+ +P L + + P +++ P + +T+P +P
Sbjct: 185 LTEALSTEPAATEALSTEPRLTEALSTEPRLTEALSTEPAATESLSTEPKITETLPTEPA 244
Query: 1308 LMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAK-IPKTTIAGA 1466
+A +P + +P DP ++ +P + T T P+A PK T A
Sbjct: 245 TTEAPFREPTTIPALPTDPTTVEALP-TRTATTRGLTTALPVASDTPKGTTVAA 297
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,603,935
Number of extensions: 1627923
Number of successful extensions: 5529
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5431
Number of HSP's successfully gapped: 13
Length of query: 625
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 517
Effective length of database: 14,107,870
Effective search space: 7293768790
Effective search space used: 7293768790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012185
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012185
(1877 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_862739.1| PREDICTED: similar to PGC-1 related co-activato... 60 9e-09
Alignment gi|XP_534998.2| PREDICTED: similar to PGC-1 related co-activato... 60 9e-09
Alignment gi|XP_535835.2| PREDICTED: similar to Fetuin-B precursor (IRL68... 59 2e-08
>ref|XP_862739.1| PREDICTED: similar to PGC-1 related co-activator isoform 2 [Canis
familiaris].
Length = 1540
Score = 59.7 bits (143), Expect = 9e-09
Identities = 31/106 (29%), Positives = 56/106 (52%)
Frame = +3
Query: 1125 LLMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDP 1304
+L D +P+DP L+D P L+ ++P DP+L+D + +D + P+ D P DP
Sbjct: 473 VLADPVPVDPALVDLASANPELVVSLPADPVLIDPVLADSAEIDPTVVVPISDDLPPGDP 532
Query: 1305 LLMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAKI 1442
+ ++ P+D + D P+DP+L+ + P M V +P ++
Sbjct: 533 VPANSAPVDSVPSDLAPVDPVLVKSRPSDPRRGAMSSVQGNPAPRL 578
Score = 57.4 bits (137), Expect = 5e-08
Identities = 31/111 (27%), Positives = 56/111 (50%)
Frame = +3
Query: 1140 IPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPLLMDA 1319
+P+D + D + P+L D +P+DP L+D P L+ ++P P+L+D + D +D
Sbjct: 458 MPLDAVETDPTEVHPVLADPVPVDPALVDLASANPELVVSLPADPVLIDPVLADSAEIDP 517
Query: 1320 IPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAKIPKTTIAGAMA 1472
+ P+ D P DP+ ++ P+ + + PV + P GAM+
Sbjct: 518 TVVVPISDDLPPGDPVPANSAPVDSVPSDLAPVDPVLVKSRPSDPRRGAMS 568
>ref|XP_534998.2| PREDICTED: similar to PGC-1 related co-activator isoform 1 [Canis
familiaris].
Length = 1662
Score = 59.7 bits (143), Expect = 9e-09
Identities = 31/106 (29%), Positives = 56/106 (52%)
Frame = +3
Query: 1125 LLMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDP 1304
+L D +P+DP L+D P L+ ++P DP+L+D + +D + P+ D P DP
Sbjct: 593 VLADPVPVDPALVDLASANPELVVSLPADPVLIDPVLADSAEIDPTVVVPISDDLPPGDP 652
Query: 1305 LLMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAKI 1442
+ ++ P+D + D P+DP+L+ + P M V +P ++
Sbjct: 653 VPANSAPVDSVPSDLAPVDPVLVKSRPSDPRRGAMSSVQGNPAPRL 698
Score = 57.4 bits (137), Expect = 5e-08
Identities = 31/111 (27%), Positives = 56/111 (50%)
Frame = +3
Query: 1140 IPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPLLMDA 1319
+P+D + D + P+L D +P+DP L+D P L+ ++P P+L+D + D +D
Sbjct: 578 MPLDAVETDPTEVHPVLADPVPVDPALVDLASANPELVVSLPADPVLIDPVLADSAEIDP 637
Query: 1320 IPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAKIPKTTIAGAMA 1472
+ P+ D P DP+ ++ P+ + + PV + P GAM+
Sbjct: 638 TVVVPISDDLPPGDPVPANSAPVDSVPSDLAPVDPVLVKSRPSDPRRGAMS 688
>ref|XP_535835.2| PREDICTED: similar to Fetuin-B precursor (IRL685) (16G2) [Canis
familiaris].
Length = 385
Score = 58.9 bits (141), Expect = 2e-08
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Frame = +2
Query: 185 VARKALDLINKGRWDGYLFELLQVADAHLDKSEST-AVYYLVLHVKESDCPVLSRKHWDD 361
VA AL IN+ R DGY+ L +V+D + + +++YL L V E+DC VLSRK W D
Sbjct: 43 VAGFALQDINRDRKDGYVLSLNRVSDVREHRQVAMGSLFYLTLDVLETDCHVLSRKPWKD 102
Query: 362 CEPAVSTRPSDIVIGQCKVIATTCLDGSQDLRVNGFNCTTSSASSVLANTK----DSPVL 529
C + V GQCK + G + L + +NCT S + + SP
Sbjct: 103 CG---VRHLHESVYGQCKALFYVNKPG-RVLYLPAYNCTLRPVSRRRIHNRCPDCPSPRA 158
Query: 530 IDFFEDTEPYRKEANQTLEKYKRENS 607
D + T + A ++L KY E++
Sbjct: 159 TDLSDPT--VLEAALESLAKYNSEST 182
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,111,085
Number of extensions: 1653158
Number of successful extensions: 5931
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5846
Number of HSP's successfully gapped: 5
Length of query: 625
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 516
Effective length of database: 15,240,880
Effective search space: 7864294080
Effective search space used: 7864294080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012185
(1877 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132628.2| PREDICTED: histidine-rich glycoprotein [Sus ... 682 0.0
Alignment gi|XP_003133217.1| PREDICTED: peroxisome proliferator-activated... 54 4e-07
>ref|XP_003132628.2| PREDICTED: histidine-rich glycoprotein [Sus scrofa].
Length = 518
Score = 682 bits (1759), Expect = 0.0
Identities = 327/339 (96%), Positives = 327/339 (96%)
Frame = +2
Query: 89 MRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAH 268
MRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAH
Sbjct: 1 MRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAH 60
Query: 269 LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQ 448
LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQ
Sbjct: 61 LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQ 120
Query: 449 DLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRV 628
DLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRV
Sbjct: 121 DLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRV 180
Query: 629 DKXXXXXXXXXXXXTNYYVDFSVRNCSSRWRSPTFGFCRADFINDAEASDLENPEDIVIN 808
DK TNYYVDFSVRNCSSRWRSPTFGFCRADFINDAEASDLENPEDIVIN
Sbjct: 181 DKVERVARVRGGERTNYYVDFSVRNCSSRWRSPTFGFCRADFINDAEASDLENPEDIVIN 240
Query: 809 CEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHHDSHKPHKFGCPPP 988
CEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHHDSHKPHKFGCPPP
Sbjct: 241 CEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHHDSHKPHKFGCPPP 300
Query: 989 LGDKSHSDSPPFQAEASPSLASLGTNGVHGPSDNHSSSE 1105
LGDKSHSDSPPFQAEASPSLASLGTNGVHGPSDNHSSSE
Sbjct: 301 LGDKSHSDSPPFQAEASPSLASLGTNGVHGPSDNHSSSE 339
Score = 123 bits (309), Expect = 3e-28
Identities = 65/114 (57%), Positives = 69/114 (60%)
Frame = +2
Query: 1394 DFHDYGXXXXXXXXXXXXXXXXXXXXXXXXXSEERGPGKKHFPFHGREIGYVHRLPPLKK 1573
DFHDYG SEERGPGKKHFPFHGREIGYVHRLPPLKK
Sbjct: 401 DFHDYGPCDPPPHSQDPQDHHRWGHGPPPRHSEERGPGKKHFPFHGREIGYVHRLPPLKK 460
Query: 1574 GEVLPLSEANFPSFLLPHHKPPTARDSAPSLNQPLKSCSGNIQGVNFHIRSKFF 1735
GEVLPL EANFPSFLLPHHK P + P +SC G +G H+ SKFF
Sbjct: 461 GEVLPLPEANFPSFLLPHHK-PLQPEIQPFPQSASESCPGTFRGEFSHL-SKFF 512
>ref|XP_003133217.1| PREDICTED: peroxisome proliferator-activated receptor gamma
coactivator-related protein 1 [Sus scrofa].
Length = 1662
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/86 (29%), Positives = 49/86 (56%)
Frame = +3
Query: 1128 LMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPL 1307
++D++ DP+ +D L+DA+ D +L D P+ +D + + P+ D P+DP+
Sbjct: 595 VVDSVVADPVPVDLASANSELVDALSADSVLNDPALTDPVAIDPVVVVPISDDLPPVDPV 654
Query: 1308 LMDAIPMDPLLMDTIPMDPLLIDTIP 1385
L + + +D + D P+DP+L+ + P
Sbjct: 655 LANPVQVDSVSSDLAPVDPVLVKSRP 680
Score = 53.1 bits (126), Expect = 5e-07
Identities = 28/125 (22%), Positives = 62/125 (49%)
Frame = +3
Query: 1128 LMDAIPMDPLLMDAIPMGPLLMDAIPMDPLLMDTIPMGPLLMDTIPMGPLLMDTIPMDPL 1307
++D+ DP+ +D++ ++D++ DP+ +D L+D + +L D DP+
Sbjct: 575 VVDSAQADPMPLDSVEADSTVVDSVVADPVPVDLASANSELVDALSADSVLNDPALTDPV 634
Query: 1308 LMDAIPMDPLLMDTIPMDPLLIDTIPMAMISMTMDPVTHHPIAKIPKTTIAGAMAHHLGT 1487
+D + + P+ D P+DP+L + + + +S + PV + P GA++ G+
Sbjct: 635 AIDPVVVVPISDDLPPVDPVLANPVQVDSVSSDLAPVDPVLVKSRPTDPRRGAVSSAQGS 694
Query: 1488 QKKEV 1502
++
Sbjct: 695 SPPQL 699
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,221,702
Number of extensions: 1088184
Number of successful extensions: 3439
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3368
Number of HSP's successfully gapped: 4
Length of query: 625
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 520
Effective length of database: 8,729,747
Effective search space: 4539468440
Effective search space used: 4539468440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012185
(1877 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444406.2| histidine-rich glycoprotein [Mus musculus]. 344 2e-94
Alignment gi|NP_001077374.1| fetuin-B isoform 3 [Mus musculus]. 62 2e-09
Alignment gi|NP_067539.1| fetuin-B isoform 1 [Mus musculus]. 62 2e-09
>ref|NP_444406.2| histidine-rich glycoprotein [Mus musculus].
Length = 536
Score = 344 bits (882), Expect = 2e-94
Identities = 192/357 (53%), Positives = 230/357 (64%), Gaps = 8/357 (2%)
Frame = +2
Query: 59 SKAWFSLFNKMRLLNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYL 238
S+ WFS M++L +LL+TLQCS A+SPT CD +EP+A K LDLINKGR GY+
Sbjct: 5 SQGWFST---MKVLTTA---LLLVTLQCSHALSPTNCDASEPLAEKVLDLINKGRRSGYV 58
Query: 239 FELLQVADAHLDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKV 418
FELL+V+DAHLD++ + VYYL L V ESDC VLS K DDC P S S+IVIGQCKV
Sbjct: 59 FELLRVSDAHLDRAGTATVYYLALDVIESDCWVLSTKAQDDCLP--SRWQSEIVIGQCKV 116
Query: 419 IATTCLDGSQDLRVNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKR 598
IAT + SQDL VNG+NCTTSS SS L NTKDSPVL+DFFED+E YRK+A + L+KYK
Sbjct: 117 IATRYSNESQDLSVNGYNCTTSSVSSALRNTKDSPVLLDFFEDSELYRKQARKALDKYKT 176
Query: 599 ENSDFASFRVDKXXXXXXXXXXXXTNYYVDFSVRNCSSRW--RSP-TFGFCRADFINDAE 769
+N DFASFRV++ TNYYV+FS+RNCS++ RSP FGFCRA E
Sbjct: 177 DNGDFASFRVERAERVIRARGGERTNYYVEFSMRNCSTQHFPRSPLVFGFCRALLSYSIE 236
Query: 770 ASDLENPEDIVINCEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHH 949
SDLE P+ I INCEVFN +DH++ S + H G HE + K SRDHH
Sbjct: 237 TSDLETPDSIDINCEVFNIEDHKDTSDMKPHWG-------HERPLCDKHLCKLSGSRDHH 289
Query: 950 DSHKPHKFGCPPPLGDKSHSDSPPFQAEASPSL-----ASLGTNGVHGPSDNHSSSE 1105
+HK K GCPPP K +SD P Q A P L G N H PS NHS +E
Sbjct: 290 HTHKTDKLGCPPPPEGKDNSDRPRLQEGALPQLPPGYPPHSGANRTHRPSYNHSCNE 346
Score = 78.6 bits (192), Expect = 2e-14
Identities = 47/114 (41%), Positives = 55/114 (48%)
Frame = +2
Query: 1394 DFHDYGXXXXXXXXXXXXXXXXXXXXXXXXXSEERGPGKKHFPFHGREIGYVHRLPPLKK 1573
DF DYG S +RGPGK FPFH ++IGYV+RLPPL
Sbjct: 418 DFLDYGPCDPPSNSQELKGQYHRGYGPPHGHSRKRGPGKGLFPFHHQQIGYVYRLPPLNI 477
Query: 1574 GEVLPLSEANFPSFLLPHHKPPTARDSAPSLNQPLKSCSGNIQGVNFHIRSKFF 1735
GEVL L EANFPSF LP+ + P +SC G + F SKFF
Sbjct: 478 GEVLTLPEANFPSFSLPNCNRSLQPEIQPFPQTASRSCPGKFES-EFPQISKFF 530
>ref|NP_001077374.1| fetuin-B isoform 3 [Mus musculus].
Length = 388
Score = 62.0 bits (149), Expect = 2e-09
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Frame = +2
Query: 158 PTGCDDAE--PVARKALDLINKGRWDGYLFELLQVADAHLDKSEST-AVYYLVLHVKESD 328
P GC+D+E VA AL IN+ + DGY+ L +V D E +++YL L V E+D
Sbjct: 36 PLGCNDSEVLAVAGFALQNINRDQKDGYMLSLNRVHDVREHYQEDMGSLFYLTLDVLETD 95
Query: 329 CPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQDLRVNGFNCTTSSASSVLAN 508
C VLSRK DC+P + + V GQCK + + L + +NCT S +
Sbjct: 96 CHVLSRKAQKDCKPRMF---YESVYGQCKAM-FHINKPRRVLYLPAYNCTLRPVSKRKTH 151
Query: 509 T--KDSPVLIDFFEDTEPYRKEANQTLEKYKREN 604
T D P ID + + A ++L K+ ++
Sbjct: 152 TTCPDCPSPIDLSNPSA--LEAATESLAKFNSKS 183
>ref|NP_067539.1| fetuin-B isoform 1 [Mus musculus].
Length = 388
Score = 62.0 bits (149), Expect = 2e-09
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Frame = +2
Query: 158 PTGCDDAE--PVARKALDLINKGRWDGYLFELLQVADAHLDKSEST-AVYYLVLHVKESD 328
P GC+D+E VA AL IN+ + DGY+ L +V D E +++YL L V E+D
Sbjct: 36 PLGCNDSEVLAVAGFALQNINRDQKDGYMLSLNRVHDVREHYQEDMGSLFYLTLDVLETD 95
Query: 329 CPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQDLRVNGFNCTTSSASSVLAN 508
C VLSRK DC+P + + V GQCK + + L + +NCT S +
Sbjct: 96 CHVLSRKAQKDCKPRMF---YESVYGQCKAM-FHINKPRRVLYLPAYNCTLRPVSKRKTH 151
Query: 509 T--KDSPVLIDFFEDTEPYRKEANQTLEKYKREN 604
T D P ID + + A ++L K+ ++
Sbjct: 152 TTCPDCPSPIDLSNPSA--LEAATESLAKFNSKS 183
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,133,962
Number of extensions: 1393631
Number of successful extensions: 4603
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4528
Number of HSP's successfully gapped: 4
Length of query: 625
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 518
Effective length of database: 12,403,707
Effective search space: 6425120226
Effective search space used: 6425120226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012185
(1877 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000403.1| histidine-rich glycoprotein precursor [Homo sap... 399 e-111
Alignment gi|NP_055190.2| fetuin-B precursor [Homo sapiens]. 71 4e-12
>ref|NP_000403.1| histidine-rich glycoprotein precursor [Homo sapiens].
Length = 525
Score = 399 bits (1026), Expect = e-111
Identities = 209/348 (60%), Positives = 241/348 (69%), Gaps = 12/348 (3%)
Frame = +2
Query: 98 LNAVPLFILLITLQCSRAVSPTGCDDAEPVARKALDLINKGRWDGYLFELLQVADAHLDK 277
+ A+ +LLITLQ S AVSPT C EP A KALDLINK R DGYLF+LL++ADAHLD+
Sbjct: 1 MKALIAALLLITLQYSCAVSPTDCSAVEPEAEKALDLINKRRRDGYLFQLLRIADAHLDR 60
Query: 278 SESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIATTCLDGSQDLR 457
E+T VYYLVL V+ESDC VLSRK+W+DCEP S RPS+IVIGQCKVIAT SQDLR
Sbjct: 61 VENTTVYYLVLDVQESDCSVLSRKYWNDCEPPDSRRPSEIVIGQCKVIATRHSHESQDLR 120
Query: 458 VNGFNCTTSSASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKRENSDFASFRVDKX 637
V FNCTTSS SS LANTKDSPVLIDFFEDTE YRK+AN+ LEKYK EN DFASFRVD+
Sbjct: 121 VIDFNCTTSSVSSALANTKDSPVLIDFFEDTERYRKQANKALEKYKEENDDFASFRVDRI 180
Query: 638 XXXXXXXXXXXTNYYVDFSVRNCSSRW--RSP-TFGFCRADFINDAEASDLENPEDIVIN 808
T Y+VDFSVRNC R P FGFCRAD D EA DLE+P+++VIN
Sbjct: 181 ERVARVRGGEGTGYFVDFSVRNCPRHHFPRHPNVFGFCRADLFYDVEALDLESPKNLVIN 240
Query: 809 CEVFNFKDHRNISGGQKHLGHRFHSGEHEHSPAGRPPHKPGRSRDHHDSHKPHKFGCPPP 988
CEVF+ ++H NI+G HLGH FH G HE S +PP KP SRDHH HKPH+ G PPP
Sbjct: 241 CEVFDPQEHENINGVPPHLGHPFHWGGHERSSTTKPPFKPHGSRDHHHPHKPHEHGPPPP 300
Query: 989 LGDKSHSDSPPFQAEASPSL---------ASLGTNGVHGPSDNHSSSE 1105
++ HS PP P L A+ GTNG S N++SS+
Sbjct: 301 PDERDHSHGPPLPQGPPPLLPMSCSSCQHATFGTNGAQRHSHNNNSSD 348
Score = 88.2 bits (217), Expect = 2e-17
Identities = 46/80 (57%), Positives = 52/80 (65%)
Frame = +2
Query: 1496 RGPGKKHFPFHGREIGYVHRLPPLKKGEVLPLSEANFPSFLLPHHKPPTARDSAPSLNQP 1675
RGPGK PFH R+IG V+RLPPL+KGEVLPL EANFPSF LPHHK P D+ P
Sbjct: 441 RGPGKGPRPFHCRQIGSVYRLPPLRKGEVLPLPEANFPSFPLPHHKHPLKPDNQPFPQSV 500
Query: 1676 LKSCSGNIQGVNFHIRSKFF 1735
+SC G + F S FF
Sbjct: 501 SESCPGKFKS-GFPQVSMFF 519
>ref|NP_055190.2| fetuin-B precursor [Homo sapiens].
Length = 382
Score = 70.9 bits (172), Expect = 4e-12
Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
Frame = +2
Query: 107 VPLFILLITLQCSR------AVSPT-----GCDDAE--PVARKALDLINKGRWDGYLFEL 247
+PL + ++ L C A++P+ GC+D++ VA AL INK R DGY+ L
Sbjct: 5 LPLALCILVLCCGAMSPPQLALNPSALLSRGCNDSDVLAVAGFALRDINKDRKDGYVLRL 64
Query: 248 LQVADAH-LDKSESTAVYYLVLHVKESDCPVLSRKHWDDCEPAVSTRPSDIVIGQCKVIA 424
+V DA + +++YL L V E+DC VL +K W DC + + V GQCK I
Sbjct: 65 NRVNDAQEYRRGGLGSLFYLTLDVLETDCHVLRKKAWQDCGMRIF---FESVYGQCKAI- 120
Query: 425 TTCLDGSQDLRVNGFNCTTS--SASSVLANTKDSPVLIDFFEDTEPYRKEANQTLEKYKR 598
+ S+ L + +NCT S + D P I + A ++L KY
Sbjct: 121 FYMNNPSRVLYLAAYNCTLRPVSKKKIYMTCPDCPSSIPTDSSNHQVLEAATESLAKYNN 180
Query: 599 ENS--DFASFRVDK 634
EN+ ++ F+V +
Sbjct: 181 ENTSKQYSLFKVTR 194
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,202,123
Number of extensions: 1637277
Number of successful extensions: 5551
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5446
Number of HSP's successfully gapped: 3
Length of query: 625
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 516
Effective length of database: 14,704,088
Effective search space: 7587309408
Effective search space used: 7587309408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012185
(1877 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 620 e-175
>Sscrofa_Chr13
|| Length = 218635234
Score = 620 bits (313), Expect = e-175
Identities = 313/313 (100%)
Strand = Plus / Plus
Query: 828 aggatcatagaaacatcagtggtgggcagaagcatttgggccatcgcttccactctggcg 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905325 aggatcatagaaacatcagtggtgggcagaagcatttgggccatcgcttccactctggcg 133905384
Query: 888 agcatgagcattctcctgctggcaggcctccacataagcccggtagatctcgagatcacc 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905385 agcatgagcattctcctgctggcaggcctccacataagcccggtagatctcgagatcacc 133905444
Query: 948 atgattcccacaagccacataaatttgggtgcccacctcctctaggagacaaaagtcact 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905445 atgattcccacaagccacataaatttgggtgcccacctcctctaggagacaaaagtcact 133905504
Query: 1008 cagacagtccaccatttcaagcagaagcttctccatcattggcctctttaggcaccaatg 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905505 cagacagtccaccatttcaagcagaagcttctccatcattggcctctttaggcaccaatg 133905564
Query: 1068 gggtccatggaccctcagataatcatagttccagtgagcatcatctcccaggacatcctc 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905565 gggtccatggaccctcagataatcatagttccagtgagcatcatctcccaggacatcctc 133905624
Query: 1128 ctcatggacgcca 1140
|||||||||||||
Sbjct: 133905625 ctcatggacgcca 133905637
Score = 559 bits (282), Expect = e-156
Identities = 326/334 (97%), Gaps = 5/334 (1%)
Strand = Plus / Plus
Query: 1387 tggccatgatttccatgactatggaccctgtgacccaccaccccatagccaagatcccca 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905884 tggccatgatttccatgactatggaccctgtgacccaccaccccatagccaagatcccca 133905943
Query: 1447 agaccaccatcgctggggccatggcccaccacctaggcactcagaagaaagaggtccagg 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133905944 agaccaccatcgctggggccatggcccaccacctaggcactcagaagaaagaggtccagg 133906003
Query: 1507 taaaaaacactttcccttccatgggagagagattggatatgttcaccgactcccaccatt 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133906004 taaaaaacactttcccttccatgggagagagattggatatgttcaccgactcccaccatt 133906063
Query: 1567 aaagaaaggtgaggttcttcctctttccgaagccaattttcccagtttcttgttgccaca 1626
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 133906064 aaagaaaggtgaggttcttcctcttcccgaagccaattttcccagtttcttgttgccaca 133906123
Query: 1627 ccacaagccccctacagccagagattcagccccttccctcaatcagcctctgaaatcatg 1686
||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 133906124 ccacaag-cccctacagccagagattcag-cccttccctcaatcagcctctg-aatcatg 133906180
Query: 1687 ttcagggaacattcaaggggtgaattttcacatc 1720
| ||||| |||||| |||||||| ||||||||||
Sbjct: 133906181 tccaggg-acattc-aggggtgagttttcacatc 133906212
Score = 557 bits (281), Expect = e-156
Identities = 281/281 (100%)
Strand = Plus / Plus
Query: 1 ttgtgcatgtgtgtgtttaagaaaatctgtatataaacttctccgccgtggtatccagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133895239 ttgtgcatgtgtgtgtttaagaaaatctgtatataaacttctccgccgtggtatccagag 133895298
Query: 61 caaggcatggttttcactttttaacaaaatgaggttactcaatgcagtgccgcttttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133895299 caaggcatggttttcactttttaacaaaatgaggttactcaatgcagtgccgcttttcat 133895358
Query: 121 ccttttgatcacattgcagtgttcccgtgctgtgagtcccacaggctgtgacgatgctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133895359 ccttttgatcacattgcagtgttcccgtgctgtgagtcccacaggctgtgacgatgctga 133895418
Query: 181 gcctgtggccagaaaagctctagacctgatcaataaaggacgatgggacggctacctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133895419 gcctgtggccagaaaagctctagacctgatcaataaaggacgatgggacggctacctttt 133895478
Query: 241 cgagttgctgcaggttgctgatgcccacttggacaaatcgg 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 133895479 cgagttgctgcaggttgctgatgcccacttggacaaatcgg 133895519
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 488 gcctcttcagtactggccaatacgaaagacagcccagtactcatcgatttctttgaggat 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133900678 gcctcttcagtactggccaatacgaaagacagcccagtactcatcgatttctttgaggat 133900737
Query: 548 acggagccctacagaaaagaagctaaccaaaccttggaaaagtacaaaagggagaacagt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133900738 acggagccctacagaaaagaagctaaccaaaccttggaaaagtacaaaagggagaacagt 133900797
Query: 608 gactttgcctctttccgagtggacaaagtggagagggttgcaagagtg 655
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133900798 gactttgcctctttccgagtggacaaagtggagagggttgcaagagtg 133900845
Score = 230 bits (116), Expect = 2e-57
Identities = 119/120 (99%)
Strand = Plus / Plus
Query: 280 ggaatctaccgctgtctattatttagtcttgcatgtaaaagaatcagactgtccagtcct 339
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133897762 ggaatctaccgctgtgtattatttagtcttgcatgtaaaagaatcagactgtccagtcct 133897821
Query: 340 atccaggaagcactgggatgactgtgagccagctgtttccacacgtccatctgatatagt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133897822 atccaggaagcactgggatgactgtgagccagctgtttccacacgtccatctgatatagt 133897881
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 728 acctttggattctgtagagcagatttcatcaatgatgcagaagcctctgacttggaaaac 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133903961 acctttggattctgtagagcagatttcatcaatgatgcagaagcctctgacttggaaaac 133904020
Query: 788 ccagaagatattgtcataaactgtgaagtcttcaacttcaagg 830
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133904021 ccagaagatattgtcataaactgtgaagtcttcaacttcaagg 133904063
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 398 gttattggacaatgtaaggtaatagctacaacatgtttggatggatctcaggatcttaga 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133898884 gttattggacaatgtaaggtaatagctacaacatgtttggatggatctcaggatcttaga 133898943
Query: 458 gtgaatggctttaattgcaccacaagttctg 488
|||||||||||||||||||||||||||||||
Sbjct: 133898944 gtgaatggctttaattgcaccacaagttctg 133898974
Score = 145 bits (73), Expect = 1e-31
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 655 gagaggaggggaaagaacgaattactacgtggatttctctgtgaggaactgctccagtcg 714
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Sbjct: 133901403 gagaggaggggaaagaacgaattactacgtggatttctctgtgaggaactgctccagtcg 133901462
Query: 715 ctggcgctctcct 727
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Sbjct: 133901463 ctggcgctctcct 133901475
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,198,186
Number of extensions: 313
Number of successful extensions: 313
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 8
Length of query: 1877
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1855
Effective length of database: 2,808,408,574
Effective search space: 5209597904770
Effective search space used: 5209597904770
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)