Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012196
(1238 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532345.2| PREDICTED: similar to eukaryotic translation el... 428 e-120
Alignment gi|XP_856630.1| PREDICTED: similar to Elongation factor 1-delta... 419 e-117
Alignment gi|XP_856709.1| PREDICTED: similar to Elongation factor 1-delta... 417 e-116
Alignment gi|XP_856555.1| PREDICTED: similar to Elongation factor 1-delta... 403 e-112
Alignment gi|XP_856591.1| PREDICTED: similar to Elongation factor 1-delta... 384 e-106
Alignment gi|XP_856754.1| PREDICTED: similar to eukaryotic translation el... 381 e-106
Alignment gi|XP_856676.1| PREDICTED: similar to Elongation factor 1-delta... 377 e-105
Alignment gi|XP_859898.1| PREDICTED: similar to eukaryotic translation el... 176 5e-44
Alignment gi|XP_859860.1| PREDICTED: similar to eukaryotic translation el... 176 5e-44
Alignment gi|XP_536040.1| PREDICTED: similar to eukaryotic translation el... 176 5e-44
>ref|XP_532345.2| PREDICTED: similar to eukaryotic translation elongation factor 1
delta isoform 1 [Canis familiaris].
Length = 634
Score = 428 bits (1100), Expect = e-120
Identities = 224/281 (79%), Positives = 229/281 (81%)
Frame = +3
Query: 267 RKMATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQ 446
+KMATNFLVHEK+WFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQ
Sbjct: 353 KKMATNFLVHEKIWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQ 412
Query: 447 KSLXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKT 626
KSL DHSEL IRIASLEVENQSLRGVVQDLQQAV KLEARLS LEK+
Sbjct: 413 KSLAGSSGPGASSGPSGDHSELAIRIASLEVENQSLRGVVQDLQQAVSKLEARLSVLEKS 472
Query: 627 SPAHRATAPQTQHVSPMRQVEPPSRKAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 806
SP HRA APQTQHVSPMRQ EPP RKAATA
Sbjct: 473 SPTHRAAAPQTQHVSPMRQAEPPPRKAATAAEDDEDDAIDLFGSDEEEDKEAARLREERL 532
Query: 807 XQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYG 986
QYAEKKAKKPALVAKSSILLDVKPWDDET+MAQLEACVRSIQLDGLTWGGSKLVPVGYG
Sbjct: 533 RQYAEKKAKKPALVAKSSILLDVKPWDDETNMAQLEACVRSIQLDGLTWGGSKLVPVGYG 592
Query: 987 IRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
IRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 593 IRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 633
>ref|XP_856630.1| PREDICTED: similar to Elongation factor 1-delta (EF-1-delta) (Antigen
NY-CO-4) isoform 5 [Canis familiaris].
Length = 286
Score = 419 bits (1076), Expect = e-117
Identities = 223/285 (78%), Positives = 227/285 (79%), Gaps = 6/285 (2%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFLVHEK+WFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLVHEKIWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
L DHSEL IRIASLEVENQSLRGVVQDLQQAV KLEARLS LEK+SP
Sbjct: 61 LAGSSGPGASSGPSGDHSELAIRIASLEVENQSLRGVVQDLQQAVSKLEARLSVLEKSSP 120
Query: 633 AHRATAPQT------QHVSPMRQVEPPSRKAATATXXXXXXXXXXXXXXXXXXXXXXXXX 794
HRA APQT QHVSPMRQ EPP RKAATA
Sbjct: 121 THRAAAPQTQPLSPWQHVSPMRQAEPPPRKAATAAEDDEDDAIDLFGSDEEEDKEAARLR 180
Query: 795 XXXXXQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVP 974
QYAEKKAKKPALVAKSSILLDVKPWDDET+MAQLEACVRSIQLDGLTWGGSKLVP
Sbjct: 181 EERLRQYAEKKAKKPALVAKSSILLDVKPWDDETNMAQLEACVRSIQLDGLTWGGSKLVP 240
Query: 975 VGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
VGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 241 VGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 285
>ref|XP_856709.1| PREDICTED: similar to Elongation factor 1-delta (EF-1-delta) (Antigen
NY-CO-4) isoform 7 [Canis familiaris].
Length = 291
Score = 417 bits (1071), Expect = e-116
Identities = 223/290 (76%), Positives = 227/290 (78%), Gaps = 11/290 (3%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFLVHEK+WFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLVHEKIWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXX-----------DHSELVIRIASLEVENQSLRGVVQDLQQAVCKLE 599
L DHSEL IRIASLEVENQSLRGVVQDLQQAV KLE
Sbjct: 61 LAGVRGSLCDGNLENSSPGASSGPSGDHSELAIRIASLEVENQSLRGVVQDLQQAVSKLE 120
Query: 600 ARLSALEKTSPAHRATAPQTQHVSPMRQVEPPSRKAATATXXXXXXXXXXXXXXXXXXXX 779
ARLS LEK+SP HRA APQTQHVSPMRQ EPP RKAATA
Sbjct: 121 ARLSVLEKSSPTHRAAAPQTQHVSPMRQAEPPPRKAATAAEDDEDDAIDLFGSDEEEDKE 180
Query: 780 XXXXXXXXXXQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGG 959
QYAEKKAKKPALVAKSSILLDVKPWDDET+MAQLEACVRSIQLDGLTWGG
Sbjct: 181 AARLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETNMAQLEACVRSIQLDGLTWGG 240
Query: 960 SKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
SKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 241 SKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 290
>ref|XP_856555.1| PREDICTED: similar to Elongation factor 1-delta (EF-1-delta) (Antigen
NY-CO-4) isoform 3 [Canis familiaris].
Length = 274
Score = 403 bits (1036), Expect = e-112
Identities = 216/279 (77%), Positives = 220/279 (78%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFLVHEK+WFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLVHEKIWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
L DHSEL IRIASLEVENQSLRGVVQDLQQAV KLEARLS LEK+SP
Sbjct: 61 LAGSSGPGASSGPSGDHSELAIRIASLEVENQSLRGVVQDLQQAVSKLEARLSVLEKSSP 120
Query: 633 AHRATAPQTQHVSPMRQVEPPSRKAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ 812
HRA APQTQ EPP RKAATA Q
Sbjct: 121 THRAAAPQTQ------VTEPPPRKAATAAEDDEDDAIDLFGSDEEEDKEAARLREERLRQ 174
Query: 813 YAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGIR 992
YAEKKAKKPALVAKSSILLDVKPWDDET+MAQLEACVRSIQLDGLTWGGSKLVPVGYGIR
Sbjct: 175 YAEKKAKKPALVAKSSILLDVKPWDDETNMAQLEACVRSIQLDGLTWGGSKLVPVGYGIR 234
Query: 993 KLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
KLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 235 KLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 273
>ref|XP_856591.1| PREDICTED: similar to Elongation factor 1-delta (EF-1-delta) (Antigen
NY-CO-4) isoform 4 [Canis familiaris].
Length = 274
Score = 384 bits (985), Expect = e-106
Identities = 209/281 (74%), Positives = 215/281 (76%), Gaps = 2/281 (0%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFLVHEK+WFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLVHEKIWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
L DHSEL IRIASLEVENQSLRGVVQDLQQAV KLEARLS LEK+
Sbjct: 61 LAGSSGPGASSGPSGDHSELAIRIASLEVENQSLRGVVQDLQQAVSKLEARLSVLEKS-- 118
Query: 633 AHRATAPQTQHV--SPMRQVEPPSRKAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 806
PQ + +P Q PP RKAATA
Sbjct: 119 ------PQLACIPGAPAAQASPPPRKAATAAEDDEDDAIDLFGSDEEEDKEAARLREERL 172
Query: 807 XQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYG 986
QYAEKKAKKPALVAKSSILLDVKPWDDET+MAQLEACVRSIQLDGLTWGGSKLVPVGYG
Sbjct: 173 RQYAEKKAKKPALVAKSSILLDVKPWDDETNMAQLEACVRSIQLDGLTWGGSKLVPVGYG 232
Query: 987 IRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
IRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 233 IRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 273
>ref|XP_856754.1| PREDICTED: similar to eukaryotic translation elongation factor 1
delta isoform 8 [Canis familiaris].
Length = 611
Score = 381 bits (979), Expect = e-106
Identities = 204/281 (72%), Positives = 209/281 (74%)
Frame = +3
Query: 267 RKMATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQ 446
RKMATNFLVHEK+WFDKFKYDDAERKFYEQMNGPVAGSSRQ +G
Sbjct: 354 RKMATNFLVHEKIWFDKFKYDDAERKFYEQMNGPVAGSSRQSSGPGA------------- 400
Query: 447 KSLXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKT 626
DHSEL IRIASLEVENQSLRGVVQDLQQAV KLEARLS LEK+
Sbjct: 401 -----------SSGPSGDHSELAIRIASLEVENQSLRGVVQDLQQAVSKLEARLSVLEKS 449
Query: 627 SPAHRATAPQTQHVSPMRQVEPPSRKAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 806
SP HRA APQTQHVSPMRQ EPP RKAATA
Sbjct: 450 SPTHRAAAPQTQHVSPMRQAEPPPRKAATAAEDDEDDAIDLFGSDEEEDKEAARLREERL 509
Query: 807 XQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYG 986
QYAEKKAKKPALVAKSSILLDVKPWDDET+MAQLEACVRSIQLDGLTWGGSKLVPVGYG
Sbjct: 510 RQYAEKKAKKPALVAKSSILLDVKPWDDETNMAQLEACVRSIQLDGLTWGGSKLVPVGYG 569
Query: 987 IRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
IRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 570 IRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 610
>ref|XP_856676.1| PREDICTED: similar to Elongation factor 1-delta (EF-1-delta) (Antigen
NY-CO-4) isoform 6 [Canis familiaris].
Length = 278
Score = 377 bits (969), Expect = e-105
Identities = 203/280 (72%), Positives = 210/280 (75%), Gaps = 1/280 (0%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFLVHEK+WFDKFKYDDAERKFYEQMNGPVAGSSRQ + R + +
Sbjct: 1 MATNFLVHEKIWFDKFKYDDAERKFYEQMNGPVAGSSRQ---VGTVRRSLGVCPRRLGLG 57
Query: 453 LXXXXXXXXXXXXXX-DHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTS 629
L DHSEL IRIASLEVENQSLRGVVQDLQQAV KLEARLS LEK+S
Sbjct: 58 LPGSGSGPGASSGPSGDHSELAIRIASLEVENQSLRGVVQDLQQAVSKLEARLSVLEKSS 117
Query: 630 PAHRATAPQTQHVSPMRQVEPPSRKAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 809
P HRA APQTQHVSPMRQ EPP RKAATA
Sbjct: 118 PTHRAAAPQTQHVSPMRQAEPPPRKAATAAEDDEDDAIDLFGSDEEEDKEAARLREERLR 177
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QYAEKKAKKPALVAKSSILLDVKPWDDET+MAQLEACVRSIQLDGLTWGGSKLVPVGYGI
Sbjct: 178 QYAEKKAKKPALVAKSSILLDVKPWDDETNMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 237
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 238 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 277
>ref|XP_859898.1| PREDICTED: similar to eukaryotic translation elongation factor 1 beta
2 isoform 4 [Canis familiaris].
Length = 225
Score = 176 bits (445), Expect = 5e-44
Identities = 84/100 (84%), Positives = 92/100 (92%)
Frame = +3
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QY KKAKKPALVAKSSILLDVKPWDDETDMA+LE CVRSIQ DGL WG SKLVPVGYGI
Sbjct: 125 QYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGI 184
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
+KLQIQCVVEDDKVGTD+LEE IT FE++VQS+D+AAFN+
Sbjct: 185 KKLQIQCVVEDDKVGTDMLEERITAFEDYVQSMDVAAFNK 224
>ref|XP_859860.1| PREDICTED: similar to eukaryotic translation elongation factor 1 beta
2 isoform 3 [Canis familiaris].
Length = 226
Score = 176 bits (445), Expect = 5e-44
Identities = 84/100 (84%), Positives = 92/100 (92%)
Frame = +3
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QY KKAKKPALVAKSSILLDVKPWDDETDMA+LE CVRSIQ DGL WG SKLVPVGYGI
Sbjct: 126 QYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGI 185
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
+KLQIQCVVEDDKVGTD+LEE IT FE++VQS+D+AAFN+
Sbjct: 186 KKLQIQCVVEDDKVGTDMLEERITAFEDYVQSMDVAAFNK 225
>ref|XP_536040.1| PREDICTED: similar to eukaryotic translation elongation factor 1 beta
2 isoform 1 [Canis familiaris].
Length = 225
Score = 176 bits (445), Expect = 5e-44
Identities = 84/100 (84%), Positives = 92/100 (92%)
Frame = +3
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QY KKAKKPALVAKSSILLDVKPWDDETDMA+LE CVRSIQ DGL WG SKLVPVGYGI
Sbjct: 125 QYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGI 184
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
+KLQIQCVVEDDKVGTD+LEE IT FE++VQS+D+AAFN+
Sbjct: 185 KKLQIQCVVEDDKVGTDMLEERITAFEDYVQSMDVAAFNK 224
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,005,559
Number of extensions: 1270969
Number of successful extensions: 8644
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 8573
Number of HSP's successfully gapped: 12
Length of query: 412
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 307
Effective length of database: 15,374,224
Effective search space: 4719886768
Effective search space used: 4719886768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012196
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012196
(1238 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193549.1| elongation factor 1-delta [Bos taurus]. 427 e-120
Alignment gi|NP_001014936.1| elongation factor 1-beta [Bos taurus]. 176 3e-44
>ref|NP_001193549.1| elongation factor 1-delta [Bos taurus].
Length = 280
Score = 427 bits (1099), Expect = e-120
Identities = 224/279 (80%), Positives = 229/279 (82%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFL+HEK+WFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLMHEKIWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
L DHSELV RIASLEVENQSLRGVVQDLQQAV KLEARLSALEK+SP
Sbjct: 61 LAGSSGPGASSGPSGDHSELVTRIASLEVENQSLRGVVQDLQQAVSKLEARLSALEKSSP 120
Query: 633 AHRATAPQTQHVSPMRQVEPPSRKAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ 812
AHRAT PQTQHVSPMRQVEPPSRKAATAT Q
Sbjct: 121 AHRATTPQTQHVSPMRQVEPPSRKAATATEDDEDDDIDLFGSDEEEDKEATRLREERLRQ 180
Query: 813 YAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGIR 992
YAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRS+QLDGL WG SKLVPVGYGIR
Sbjct: 181 YAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIR 240
Query: 993 KLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
KLQIQCVVEDDKVGTD LEEEITKFEEHVQSVDIAAFN+
Sbjct: 241 KLQIQCVVEDDKVGTDQLEEEITKFEEHVQSVDIAAFNK 279
>ref|NP_001014936.1| elongation factor 1-beta [Bos taurus].
Length = 225
Score = 176 bits (447), Expect = 3e-44
Identities = 84/100 (84%), Positives = 93/100 (93%)
Frame = +3
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QY KKAKKPALVAKSSILLDVKPWDDETDMA+LE CVRSIQ DGL WG SKLVPVGYGI
Sbjct: 125 QYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGI 184
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
+KLQIQCVVEDDKVGTD+LEE+IT F+E+VQS+D+AAFN+
Sbjct: 185 KKLQIQCVVEDDKVGTDMLEEQITAFDEYVQSMDVAAFNK 224
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,409,665
Number of extensions: 1289519
Number of successful extensions: 7705
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7621
Number of HSP's successfully gapped: 2
Length of query: 412
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,207,134
Effective search space: 4361590138
Effective search space used: 4361590138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012196
(1238 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125987.2| PREDICTED: hypothetical protein LOC100515435... 286 1e-77
Alignment gi|NP_001230453.1| elongation factor 1-beta [Sus scrofa]. 176 2e-44
>ref|XP_003125987.2| PREDICTED: hypothetical protein LOC100515435, partial [Sus scrofa].
Length = 409
Score = 286 bits (733), Expect = 1e-77
Identities = 173/289 (59%), Positives = 177/289 (61%), Gaps = 1/289 (0%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFLVHEKVWF+KFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLVHEKVWFNKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
L DHSELVIRIASLEVENQSLRGVVQDLQQAV KLEARLSALEKTSP
Sbjct: 61 LAGSSGPGASSGPSGDHSELVIRIASLEVENQSLRGVVQDLQQAVSKLEARLSALEKTSP 120
Query: 633 AHRATAPQTQHVSPMRQVEPPSRKAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ 812
AHRATAPQTQHVSPM RKAATAT
Sbjct: 121 AHRATAPQTQHVSPMXXXXXXXRKAATATEDDEDDDI----------------------- 157
Query: 813 YAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGIR 992
+L V WDDETDMAQLEACVRSIQLDGLTWGGS+LVP
Sbjct: 158 --------------DLLLPSVPQWDDETDMAQLEACVRSIQLDGLTWGGSELVP------ 197
Query: 993 KLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDI-AAFNRSESPGPRLK 1136
VQSVDI RSESPGPRL+
Sbjct: 198 ----------------------------VQSVDIXPPSTRSESPGPRLR 218
>ref|NP_001230453.1| elongation factor 1-beta [Sus scrofa].
Length = 225
Score = 176 bits (447), Expect = 2e-44
Identities = 84/100 (84%), Positives = 93/100 (93%)
Frame = +3
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QY KKAKKPALVAKSSILLDVKPWDDETDMA+LE CVRSIQ DGL WG SKLVPVGYGI
Sbjct: 125 QYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGI 184
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
+KLQIQCVVEDDKVGTD+LEE+IT FE++VQS+D+AAFN+
Sbjct: 185 KKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNK 224
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,258,150
Number of extensions: 923491
Number of successful extensions: 5130
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5101
Number of HSP's successfully gapped: 4
Length of query: 412
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,829,335
Effective search space: 2745923185
Effective search space used: 2745923185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012196
(1238 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083939.1| elongation factor 1-delta isoform a [Mus muscul... 406 e-113
Alignment gi|NP_075729.2| elongation factor 1-delta isoform b [Mus muscul... 402 e-112
Alignment gi|NP_061266.2| elongation factor 1-beta [Mus musculus]. 174 2e-43
>ref|NP_083939.1| elongation factor 1-delta isoform a [Mus musculus].
Length = 660
Score = 406 bits (1044), Expect = e-113
Identities = 212/282 (75%), Positives = 223/282 (79%), Gaps = 1/282 (0%)
Frame = +3
Query: 267 RKMATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQ 446
RKMATNFL HEK+WFDKFKYDDAER+FYEQMNGPV SRQENGASVILRDIARARENIQ
Sbjct: 378 RKMATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVTSGSRQENGASVILRDIARARENIQ 437
Query: 447 KSLXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKT 626
KSL DHSEL++RI SLEVENQ+LRGVVQDLQQA+ KLEARLS+LEK+
Sbjct: 438 KSLAGSSGPGASSGPGGDHSELIVRITSLEVENQNLRGVVQDLQQAISKLEARLSSLEKS 497
Query: 627 SPAHRATAPQTQHVSPMRQVEPPSRKAAT-ATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 803
SP RATAPQTQHVSPMRQVEPP++K AT A
Sbjct: 498 SPTPRATAPQTQHVSPMRQVEPPTKKGATPAEDDEDKDIDLFGSDEEEEDKEAARLREER 557
Query: 804 XXQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGY 983
QYAEKKAKKP LVAKSSILLDVKPWDDETDMAQLE CVRSIQLDGL WG SKLVPVGY
Sbjct: 558 LRQYAEKKAKKPTLVAKSSILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGY 617
Query: 984 GIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
GIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 618 GIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 659
>ref|NP_075729.2| elongation factor 1-delta isoform b [Mus musculus].
Length = 281
Score = 402 bits (1034), Expect = e-112
Identities = 210/280 (75%), Positives = 221/280 (78%), Gaps = 1/280 (0%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFL HEK+WFDKFKYDDAER+FYEQMNGPV SRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVTSGSRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
L DHSEL++RI SLEVENQ+LRGVVQDLQQA+ KLEARLS+LEK+SP
Sbjct: 61 LAGSSGPGASSGPGGDHSELIVRITSLEVENQNLRGVVQDLQQAISKLEARLSSLEKSSP 120
Query: 633 AHRATAPQTQHVSPMRQVEPPSRKAAT-ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 809
RATAPQTQHVSPMRQVEPP++K AT A
Sbjct: 121 TPRATAPQTQHVSPMRQVEPPTKKGATPAEDDEDKDIDLFGSDEEEEDKEAARLREERLR 180
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QYAEKKAKKP LVAKSSILLDVKPWDDETDMAQLE CVRSIQLDGL WG SKLVPVGYGI
Sbjct: 181 QYAEKKAKKPTLVAKSSILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGI 240
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 241 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 280
>ref|NP_061266.2| elongation factor 1-beta [Mus musculus].
Length = 225
Score = 174 bits (440), Expect = 2e-43
Identities = 82/100 (82%), Positives = 92/100 (92%)
Frame = +3
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QY KKAKKPA+VAKSSILLDVKPWDDETDM +LE CVRSIQ DGL WG SKLVPVGYGI
Sbjct: 125 QYESKKAKKPAVVAKSSILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGI 184
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
+KLQIQCVVEDDKVGTD+LEE+IT FE++VQS+D+AAFN+
Sbjct: 185 KKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNK 224
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,644,888
Number of extensions: 993853
Number of successful extensions: 5642
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5612
Number of HSP's successfully gapped: 3
Length of query: 412
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 308
Effective length of database: 12,493,815
Effective search space: 3848095020
Effective search space used: 3848095020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012196
(1238 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123525.2| elongation factor 1-delta isoform 1 [Homo sa... 416 e-116
Alignment gi|NP_115754.3| elongation factor 1-delta isoform 1 [Homo sapie... 416 e-116
Alignment gi|NP_001123529.1| elongation factor 1-delta isoform 2 [Homo sa... 412 e-115
Alignment gi|NP_001123527.1| elongation factor 1-delta isoform 2 [Homo sa... 412 e-115
Alignment gi|NP_001951.2| elongation factor 1-delta isoform 2 [Homo sapie... 412 e-115
Alignment gi|NP_001182132.1| elongation factor 1-delta isoform 5 [Homo sa... 369 e-102
Alignment gi|NP_001123528.1| elongation factor 1-delta isoform 4 [Homo sa... 364 e-100
Alignment gi|NP_001032752.1| elongation factor 1-beta [Homo sapiens]. 176 3e-44
Alignment gi|NP_066944.1| elongation factor 1-beta [Homo sapiens]. 176 3e-44
Alignment gi|NP_001950.1| elongation factor 1-beta [Homo sapiens]. 176 3e-44
>ref|NP_001123525.2| elongation factor 1-delta isoform 1 [Homo sapiens].
Length = 647
Score = 416 bits (1068), Expect = e-116
Identities = 217/282 (76%), Positives = 228/282 (80%), Gaps = 1/282 (0%)
Frame = +3
Query: 267 RKMATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQ 446
RKMATNFL HEK+WFDKFKYDDAER+FYEQMNGPVAG+SRQENGASVILRDIARARENIQ
Sbjct: 365 RKMATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQ 424
Query: 447 KSLXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKT 626
KSL DH ELV+RIASLEVENQSLRGVVQ+LQQA+ KLEARL+ LEK+
Sbjct: 425 KSLAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKS 484
Query: 627 SPAHRATAPQTQHVSPMRQVEPPSRKAAT-ATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 803
SP HRATAPQTQHVSPMRQVEPP++K AT A
Sbjct: 485 SPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREER 544
Query: 804 XXQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGY 983
QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGL WG SKLVPVGY
Sbjct: 545 LRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGY 604
Query: 984 GIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
GIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 605 GIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 646
>ref|NP_115754.3| elongation factor 1-delta isoform 1 [Homo sapiens].
Length = 647
Score = 416 bits (1068), Expect = e-116
Identities = 217/282 (76%), Positives = 228/282 (80%), Gaps = 1/282 (0%)
Frame = +3
Query: 267 RKMATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQ 446
RKMATNFL HEK+WFDKFKYDDAER+FYEQMNGPVAG+SRQENGASVILRDIARARENIQ
Sbjct: 365 RKMATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQ 424
Query: 447 KSLXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKT 626
KSL DH ELV+RIASLEVENQSLRGVVQ+LQQA+ KLEARL+ LEK+
Sbjct: 425 KSLAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKS 484
Query: 627 SPAHRATAPQTQHVSPMRQVEPPSRKAAT-ATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 803
SP HRATAPQTQHVSPMRQVEPP++K AT A
Sbjct: 485 SPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREER 544
Query: 804 XXQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGY 983
QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGL WG SKLVPVGY
Sbjct: 545 LRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGY 604
Query: 984 GIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
GIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 605 GIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 646
>ref|NP_001123529.1| elongation factor 1-delta isoform 2 [Homo sapiens].
Length = 281
Score = 412 bits (1058), Expect = e-115
Identities = 215/280 (76%), Positives = 226/280 (80%), Gaps = 1/280 (0%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFL HEK+WFDKFKYDDAER+FYEQMNGPVAG+SRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
L DH ELV+RIASLEVENQSLRGVVQ+LQQA+ KLEARL+ LEK+SP
Sbjct: 61 LAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSP 120
Query: 633 AHRATAPQTQHVSPMRQVEPPSRKAAT-ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 809
HRATAPQTQHVSPMRQVEPP++K AT A
Sbjct: 121 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR 180
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGL WG SKLVPVGYGI
Sbjct: 181 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGI 240
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 241 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 280
>ref|NP_001123527.1| elongation factor 1-delta isoform 2 [Homo sapiens].
Length = 281
Score = 412 bits (1058), Expect = e-115
Identities = 215/280 (76%), Positives = 226/280 (80%), Gaps = 1/280 (0%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFL HEK+WFDKFKYDDAER+FYEQMNGPVAG+SRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
L DH ELV+RIASLEVENQSLRGVVQ+LQQA+ KLEARL+ LEK+SP
Sbjct: 61 LAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSP 120
Query: 633 AHRATAPQTQHVSPMRQVEPPSRKAAT-ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 809
HRATAPQTQHVSPMRQVEPP++K AT A
Sbjct: 121 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR 180
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGL WG SKLVPVGYGI
Sbjct: 181 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGI 240
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 241 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 280
>ref|NP_001951.2| elongation factor 1-delta isoform 2 [Homo sapiens].
Length = 281
Score = 412 bits (1058), Expect = e-115
Identities = 215/280 (76%), Positives = 226/280 (80%), Gaps = 1/280 (0%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFL HEK+WFDKFKYDDAER+FYEQMNGPVAG+SRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
L DH ELV+RIASLEVENQSLRGVVQ+LQQA+ KLEARL+ LEK+SP
Sbjct: 61 LAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSP 120
Query: 633 AHRATAPQTQHVSPMRQVEPPSRKAAT-ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 809
HRATAPQTQHVSPMRQVEPP++K AT A
Sbjct: 121 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR 180
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGL WG SKLVPVGYGI
Sbjct: 181 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGI 240
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 241 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 280
>ref|NP_001182132.1| elongation factor 1-delta isoform 5 [Homo sapiens].
Length = 262
Score = 369 bits (947), Expect = e-102
Identities = 198/280 (70%), Positives = 208/280 (74%), Gaps = 1/280 (0%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFL HEK+WFDKFKYDDAER+FYEQMNGPVAG+SRQENGASVILRDIARARENIQKS
Sbjct: 1 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS 60
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
L DH VVQ+LQQA+ KLEARL+ LEK+SP
Sbjct: 61 LAGSSGPGASSGTSGDH-------------------VVQELQQAISKLEARLNVLEKSSP 101
Query: 633 AHRATAPQTQHVSPMRQVEPPSRKAAT-ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 809
HRATAPQTQHVSPMRQVEPP++K AT A
Sbjct: 102 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR 161
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGL WG SKLVPVGYGI
Sbjct: 162 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGI 221
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 222 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 261
>ref|NP_001123528.1| elongation factor 1-delta isoform 4 [Homo sapiens].
Length = 257
Score = 364 bits (934), Expect = e-100
Identities = 194/280 (69%), Positives = 206/280 (73%), Gaps = 1/280 (0%)
Frame = +3
Query: 273 MATNFLVHEKVWFDKFKYDDAERKFYEQMNGPVAGSSRQENGASVILRDIARARENIQKS 452
MATNFL HEK+WFDKFKYDDAER+FYEQMNGPVAG+SRQ +G
Sbjct: 1 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQSSGPGA--------------- 45
Query: 453 LXXXXXXXXXXXXXXDHSELVIRIASLEVENQSLRGVVQDLQQAVCKLEARLSALEKTSP 632
DH ELV+RIASLEVENQSLRGVVQ+LQQA+ KLEARL+ LEK+SP
Sbjct: 46 ---------SSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSP 96
Query: 633 AHRATAPQTQHVSPMRQVEPPSRKAAT-ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 809
HRATAPQTQHVSPMRQVEPP++K AT A
Sbjct: 97 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR 156
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGL WG SKLVPVGYGI
Sbjct: 157 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGI 216
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFN+
Sbjct: 217 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNK 256
>ref|NP_001032752.1| elongation factor 1-beta [Homo sapiens].
Length = 225
Score = 176 bits (447), Expect = 3e-44
Identities = 84/100 (84%), Positives = 93/100 (93%)
Frame = +3
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QY KKAKKPALVAKSSILLDVKPWDDETDMA+LE CVRSIQ DGL WG SKLVPVGYGI
Sbjct: 125 QYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGI 184
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
+KLQIQCVVEDDKVGTD+LEE+IT FE++VQS+D+AAFN+
Sbjct: 185 KKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNK 224
>ref|NP_066944.1| elongation factor 1-beta [Homo sapiens].
Length = 225
Score = 176 bits (447), Expect = 3e-44
Identities = 84/100 (84%), Positives = 93/100 (93%)
Frame = +3
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QY KKAKKPALVAKSSILLDVKPWDDETDMA+LE CVRSIQ DGL WG SKLVPVGYGI
Sbjct: 125 QYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGI 184
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
+KLQIQCVVEDDKVGTD+LEE+IT FE++VQS+D+AAFN+
Sbjct: 185 KKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNK 224
>ref|NP_001950.1| elongation factor 1-beta [Homo sapiens].
Length = 225
Score = 176 bits (447), Expect = 3e-44
Identities = 84/100 (84%), Positives = 93/100 (93%)
Frame = +3
Query: 810 QYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLTWGGSKLVPVGYGI 989
QY KKAKKPALVAKSSILLDVKPWDDETDMA+LE CVRSIQ DGL WG SKLVPVGYGI
Sbjct: 125 QYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGI 184
Query: 990 RKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNR 1109
+KLQIQCVVEDDKVGTD+LEE+IT FE++VQS+D+AAFN+
Sbjct: 185 KKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNK 224
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,861,331
Number of extensions: 1214947
Number of successful extensions: 7096
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7041
Number of HSP's successfully gapped: 11
Length of query: 412
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,835,944
Effective search space: 4554634808
Effective search space used: 4554634808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012196
(1238 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 440 e-121
gb|GL896391.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 240 2e-60
Sscrofa_Chr15 98 1e-17
>Sscrofa_Chr04
|| Length = 143465943
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 660 cagcacgtgtctcccatgcgccaagtggagccccccagccggaaggcggccacggccaca 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046667 cagcacgtgtctcccatgcgccaagtggagccccccagccggaaggcggccacggccaca 1046726
Query: 720 gaggacgacgaggacgatgacattgacctgttcggcagcgacgaagaggaggacaaggag 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046727 gaggacgacgaggacgatgacattgacctgttcggcagcgacgaagaggaggacaaggag 1046786
Query: 780 gctgcccggctgcgggaggagaggctgcggcaatacgccgagaaaaaggccaagaagccc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046787 gctgcccggctgcgggaggagaggctgcggcaatacgccgagaaaaaggccaagaagccc 1046846
Query: 840 gccctggtggccaagtcctccatcctgctggatgtcaagcct 881
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046847 gccctggtggccaagtcctccatcctgctggatgtcaagcct 1046888
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 882 tgggacgacgagacggacatggcccagctggaggcctgtgtgcgctccatccagctggac 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046999 tgggacgacgagacggacatggcccagctggaggcctgtgtgcgctccatccagctggac 1047058
Query: 942 gggctgacctggggcggctccaagctggtgcctgtgggctacggcatccgcaagctgcag 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047059 gggctgacctggggcggctccaagctggtgcctgtgggctacggcatccgcaagctgcag 1047118
Query: 1002 atccagtgcgtggtggaggacgacaaggtgggcaccgacctgctggaagaggagatcacc 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047119 atccagtgcgtggtggaggacgacaaggtgggcaccgacctgctggaagaggagatcacc 1047178
Query: 1062 aagttcgaggagcacgtg 1079
||||||||||||||||||
Sbjct: 1047179 aagttcgaggagcacgtg 1047196
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 266 caggaagatggccacaaacttcctggtgcacgagaaggtctggttcgacaagttcaaata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042558 caggaagatggccacaaacttcctggtgcacgagaaggtctggttcgacaagttcaaata 1042617
Query: 326 cgatgatgcagagaggaaattctatgagcagatgaacgggcctgtggctggctcctcacg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042618 cgatgatgcagagaggaaattctatgagcagatgaacgggcctgtggctggctcctcacg 1042677
Query: 386 ccagg 390
|||||
Sbjct: 1042678 ccagg 1042682
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 462 agctcaggccctggggcctccagcgggcccagtggagaccacagtgagctggtcatccgg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046223 agctcaggccctggggcctccagcgggcccagtggagaccacagtgagctggtcatccgg 1046282
Query: 522 atcgccagcctggaagtggagaaccagagcctgcgagggg 561
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046283 atcgccagcctggaagtggagaaccagagcctgcgagggg 1046322
Score = 194 bits (98), Expect = 8e-47
Identities = 101/102 (99%)
Strand = Plus / Plus
Query: 561 gtggtacaggatctgcagcaggccgtctgcaagctggaggcccggctgagtgcgctcgag 620
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1046399 gtggtacaggatctgcagcaggccgtctccaagctggaggcccggctgagtgcgctcgag 1046458
Query: 621 aagacctcgcccgcccaccgtgccacagccccacagacccag 662
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046459 aagacctcgcccgcccaccgtgccacagccccacagacccag 1046500
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 387 caggagaacggcgccagcgtgatcctccgtgacatcgcgagagccagagaaaacatccag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042929 caggagaacggcgccagcgtgatcctccgtgacatcgcgagagccagagaaaacatccag 1042988
Query: 447 aagtccctggccgga 461
|||||||||||||||
Sbjct: 1042989 aagtccctggccgga 1043003
Score = 143 bits (72), Expect = 3e-31
Identities = 88/92 (95%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1077 gtgcagagtgtggacattgccgccttcaaca-gatctgagagccccggcccgcgcctgaa 1135
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1047274 gtgcagagtgtggacattgccgccttcaacaagatctgagagccccggcccgcgcctgag 1047333
Query: 1136 agtgcgatgccttgcagcccaataaagactga 1167
||||||||||||||||||| |||||||||||
Sbjct: 1047334 agtgcgatgccttgcagccagataaagactga 1047365
>gb|GL896391.1| Sus scrofa unplaced genomic scaffold chrU_scaffold736
Length = 13074
Score = 240 bits (121), Expect = 2e-60
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 266 caggaagatggccacaaacttcctggtgcacgagaaggtctggttcgacaagttcaaata 325
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1087 caggaagatggccacaaacttcctggtgcacgagaaggtctggttcaacaagttcaaata 1146
Query: 326 cgatgatgcagagaggaaattctatgagcagatgaacgggcctgtggctggctcctcacg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 cgatgatgcagagaggaaattctatgagcagatgaacgggcctgtggctggctcctcacg 1206
Query: 386 ccagg 390
|||||
Sbjct: 1207 ccagg 1211
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 462 agctcaggccctggggcctccagcgggcccagtggagaccacagtgagctggtcatccgg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5460 agctcaggccctggggcctccagcgggcccagtggagaccacagtgagctggtcatccgg 5519
Query: 522 atcgccagcctggaagtggagaaccagagcctgcgagggg 561
||||||||||||||||||||||||||||||||||||||||
Sbjct: 5520 atcgccagcctggaagtggagaaccagagcctgcgagggg 5559
Score = 194 bits (98), Expect = 8e-47
Identities = 101/102 (99%)
Strand = Plus / Plus
Query: 561 gtggtacaggatctgcagcaggccgtctgcaagctggaggcccggctgagtgcgctcgag 620
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5702 gtggtacaggatctgcagcaggccgtctccaagctggaggcccggctgagtgcgctcgag 5761
Query: 621 aagacctcgcccgcccaccgtgccacagccccacagacccag 662
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5762 aagacctcgcccgcccaccgtgccacagccccacagacccag 5803
Score = 182 bits (92), Expect = 3e-43
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 882 tgggacgacgagacggacatggcccagctggaggcctgtgtgcgctccatccagctggac 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6311 tgggacgacgagacggacatggcccagctggaggcctgtgtgcgctccatccagctggac 6370
Query: 942 gggctgacctggggcggctccaagctggtgcctgtg 977
||||||||||||||||||||| ||||||||||||||
Sbjct: 6371 gggctgacctggggcggctccgagctggtgcctgtg 6406
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 387 caggagaacggcgccagcgtgatcctccgtgacatcgcgagagccagagaaaacatccag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 caggagaacggcgccagcgtgatcctccgtgacatcgcgagagccagagaaaacatccag 1599
Query: 447 aagtccctggccgga 461
|||||||||||||||
Sbjct: 1600 aagtccctggccgga 1614
Score = 129 bits (65), Expect = 4e-27
Identities = 94/100 (94%), Gaps = 4/100 (4%)
Strand = Plus / Plus
Query: 1077 gtgcagagtgtggacattg--ccgccttcaaca-gatctgagagccccggcccgcgcctg 1133
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 6574 gtgcagagtgtggacattgngccgccttcaacaagatctgagagccccggcccgcgcctg 6633
Query: 1134 aaagtgcgatgccttgcagcccaataaagactgaaattcc 1173
| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 6634 agagtgcgatgccttgcag-ccaataaagactgagattcc 6672
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 697 gccggaaggcggccacggccacagaggacgacgaggacgatgacattgacctgtt 751
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6088 gccggaaggcggccacggccacagaggacgacgaggacgatgacattgacctgtt 6142
>Sscrofa_Chr15
|| Length = 157681621
Score = 97.6 bits (49), Expect = 1e-17
Identities = 59/61 (96%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 462 agctcaggccctggggcctccagcgggcccagtggagaccacagtgagctggtcatccgg 521
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 92599423 agctcaggccctggggcctccagcaggcccagt-gagaccacagtgagctggtcatccgg 92599481
Query: 522 a 522
|
Sbjct: 92599482 a 92599482
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,911,734
Number of extensions: 151
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 15
Length of query: 1238
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1217
Effective length of database: 2,808,413,156
Effective search space: 3417838810852
Effective search space used: 3417838810852
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)