Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012203
(1745 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776917.2| 14-3-3 protein eta [Bos taurus]. 484 e-136
Alignment gi|NP_777218.2| 14-3-3 protein gamma [Bos taurus]. 428 e-120
Alignment gi|XP_002696287.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxyg... 355 5e-98
Alignment gi|XP_002702517.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxyg... 355 5e-98
Alignment gi|NP_777219.2| 14-3-3 protein beta/alpha [Bos taurus]. 354 1e-97
Alignment gi|NP_777239.1| 14-3-3 protein zeta/delta [Bos taurus]. 354 2e-97
Alignment gi|NP_001071595.1| 14-3-3 protein theta [Bos taurus]. 338 7e-93
Alignment gi|NP_001069380.1| 14-3-3 protein sigma [Bos taurus]. 309 6e-84
Alignment gi|NP_776916.1| 14-3-3 protein epsilon [Bos taurus]. 300 2e-81
Alignment gi|XP_002699268.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxyg... 295 7e-80
>ref|NP_776917.2| 14-3-3 protein eta [Bos taurus].
Length = 246
Score = 484 bits (1245), Expect = e-136
Identities = 245/246 (99%), Positives = 246/246 (100%)
Frame = +2
Query: 185 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 364
MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
Sbjct: 1 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 60
Query: 365 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 544
RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK
Sbjct: 61 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 120
Query: 545 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 724
VFYLKMKGDYYRYLAEVASG+KKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS
Sbjct: 121 VFYLKMKGDYYRYLAEVASGQKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 180
Query: 725 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 904
VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
Sbjct: 181 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 240
Query: 905 EAGEGN 922
EAGEGN
Sbjct: 241 EAGEGN 246
>ref|NP_777218.2| 14-3-3 protein gamma [Bos taurus].
Length = 247
Score = 428 bits (1101), Expect = e-120
Identities = 214/246 (86%), Positives = 231/246 (93%)
Frame = +2
Query: 185 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 364
M DREQL+Q+ARLAEQAERYDDMA+AMK VTELNEPLSNE+RNLLSVAYKNVVGARRSSW
Sbjct: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW 60
Query: 365 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 544
RVISSIEQKT ADGNEKK+E V+AYREKIEKELE VC DVL+LLD +LIKNC++ QYESK
Sbjct: 61 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
Query: 545 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 724
VFYLKMKGDYYRYLAEVA+GEK+ +VVE+SE AY EA EISKEHMQPTHPIRLGLALN+S
Sbjct: 121 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
Query: 725 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 904
VFYYEIQNAPEQAC LAK AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD+
Sbjct: 181 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
Query: 905 EAGEGN 922
+ GEGN
Sbjct: 241 DGGEGN 246
>ref|XP_002696287.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxygenase activation
protein, zeta polypeptide-like [Bos taurus].
Length = 245
Score = 355 bits (912), Expect = 5e-98
Identities = 182/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNEDRNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEDRNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|XP_002702517.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxygenase activation
protein, zeta polypeptide [Bos taurus].
Length = 245
Score = 355 bits (912), Expect = 5e-98
Identities = 182/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNEDRNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEDRNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|NP_777219.2| 14-3-3 protein beta/alpha [Bos taurus].
Length = 246
Score = 354 bits (909), Expect = 1e-97
Identities = 185/245 (75%), Positives = 210/245 (85%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 4 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 63
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 64 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 119
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 120 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 179
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q +E
Sbjct: 180 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 239
Query: 908 -AGEG 919
AGEG
Sbjct: 240 DAGEG 244
>ref|NP_777239.1| 14-3-3 protein zeta/delta [Bos taurus].
Length = 245
Score = 354 bits (908), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|NP_001071595.1| 14-3-3 protein theta [Bos taurus].
Length = 245
Score = 338 bits (868), Expect = 7e-93
Identities = 175/245 (71%), Positives = 203/245 (82%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYLAEVA G+ + ++ S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD EE
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEEC 237
Query: 908 -AGEG 919
A EG
Sbjct: 238 DAAEG 242
>ref|NP_001069380.1| 14-3-3 protein sigma [Bos taurus].
Length = 248
Score = 309 bits (791), Expect = 6e-84
Identities = 155/242 (64%), Positives = 196/242 (80%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
+R L+Q+A+LAEQAERY+DMA+ MK+ E E LS E+RNLLSVAYKNVVG +R++WRV
Sbjct: 2 ERASLIQKAKLAEQAERYEDMAAFMKSAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQK+ + +E+K +V+ YREK+E EL VC+ VL LLD LIK D ES+VF
Sbjct: 62 LSSIEQKSNEESSEEKGPEVQEYREKVETELRGVCDTVLGLLDTHLIKEAGDA--ESRVF 119
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +++++ +AY+EA +ISK+ M PT+PIRLGLALNFSVF
Sbjct: 120 YLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVF 179
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
+YEI N+PE+A LAK FD+A+A+L TL+EDSYKDSTLIMQLLRDNLTLWT+D EE
Sbjct: 180 HYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEG 239
Query: 911 GE 916
GE
Sbjct: 240 GE 241
>ref|NP_776916.1| 14-3-3 protein epsilon [Bos taurus].
Length = 255
Score = 300 bits (769), Expect = 2e-81
Identities = 153/240 (63%), Positives = 186/240 (77%)
Frame = +2
Query: 185 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 364
M DRE L+ +A+LAEQAERYD+M +MK V ++ L+ E+RNLLSVAYKNV+GARR+SW
Sbjct: 1 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASW 60
Query: 365 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 544
R+ISSIEQK G E KL+ ++ YR+ +E EL+ +C D+L +LDK LI N ESK
Sbjct: 61 RIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTG--ESK 118
Query: 545 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 724
VFY KMKGDY+RYLAE A+G + E S AYK A +I+ + PTHPIRLGLALNFS
Sbjct: 119 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS 178
Query: 725 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 904
VFYYEI N+P++AC LAK AFDDAIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +
Sbjct: 179 VFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD 238
>ref|XP_002699268.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxygenase activation
protein, theta polypeptide-like [Bos taurus].
Length = 243
Score = 295 bits (756), Expect = 7e-80
Identities = 154/239 (64%), Positives = 184/239 (76%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
++ +L+Q+ +LAEQAE YDDMA+ MKA+TE SNE+RNLLSVAYK VVG RRS+WRV
Sbjct: 2 EKTELIQKVKLAEQAEHYDDMATCMKAMTEQGAEPSNEERNLLSVAYK-VVGGRRSAWRV 60
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISS EQKT D ++KKL+ +K Y EK+E +L ++C VL LLDK+L N + VF
Sbjct: 61 ISSFEQKT--DTSDKKLQLIKDYWEKVESKLRSICTTVLELLDKYLTANATN---PESVF 115
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYLAEVA + + ++ S+ AY+EAF ISK+ MQPTHPI LGLALNFSV
Sbjct: 116 YLKMKGDYFRYLAEVACDDDQKQTIDNSQGAYQEAFHISKKEMQPTHPIGLGLALNFSVL 175
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE 907
YYEI N PE AC LAK AFD+A+AELDTLNEDS KDSTLIMQLLRDNL LWTSD EE
Sbjct: 176 YYEILNNPELACTLAKTAFDEALAELDTLNEDSCKDSTLIMQLLRDNLALWTSDSAGEE 234
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,435,642
Number of extensions: 1184155
Number of successful extensions: 3694
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3667
Number of HSP's successfully gapped: 13
Length of query: 581
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 473
Effective length of database: 14,107,870
Effective search space: 6673022510
Effective search space used: 6673022510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012203
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012203
(1745 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546936.2| PREDICTED: similar to 14-3-3 protein gamma [Can... 383 e-106
Alignment gi|XP_534429.2| PREDICTED: similar to 14-3-3 protein beta/alpha... 354 1e-97
Alignment gi|XP_852754.1| PREDICTED: similar to 14-3-3 protein beta/alpha... 354 1e-97
Alignment gi|XP_533072.2| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 354 2e-97
Alignment gi|XP_857778.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 354 2e-97
Alignment gi|XP_849044.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 354 2e-97
Alignment gi|XP_850323.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 347 2e-95
Alignment gi|XP_857819.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 346 4e-95
Alignment gi|XP_532871.1| PREDICTED: similar to 14-3-3 protein theta (14-... 338 7e-93
Alignment gi|XP_857856.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 338 7e-93
>ref|XP_546936.2| PREDICTED: similar to 14-3-3 protein gamma [Canis familiaris].
Length = 343
Score = 383 bits (984), Expect = e-106
Identities = 190/217 (87%), Positives = 204/217 (94%)
Frame = +2
Query: 272 VTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKLEKVKAYREKI 451
VTELNEPLSNE+RNLLSVAYKNVVGARRSSWRVISSIEQKT ADGNEKK+E V+AYREKI
Sbjct: 126 VTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKI 185
Query: 452 EKELETVCNDVLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEA 631
EKELE VC DVL+LLD +LIKNC++ QYESKVFYLKMKGDYYRYLAEVA+GEK+ +VVE+
Sbjct: 186 EKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVES 245
Query: 632 SEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELD 811
SE AY EA EISKEHMQPTHPIRLGLALN+SVFYYEIQNAPEQAC LAK AFDDAIAELD
Sbjct: 246 SEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELD 305
Query: 812 TLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEAGEGN 922
TLNEDSYKDSTLIMQLLRDNLTLWTSDQQD++ GEGN
Sbjct: 306 TLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGN 342
>ref|XP_534429.2| PREDICTED: similar to 14-3-3 protein beta/alpha (Protein kinase C
inhibitor protein-1) (KCIP-1) (Protein 1054) isoform 1
[Canis familiaris].
Length = 244
Score = 354 bits (909), Expect = 1e-97
Identities = 185/245 (75%), Positives = 210/245 (85%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 62 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q +E
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 237
Query: 908 -AGEG 919
AGEG
Sbjct: 238 DAGEG 242
>ref|XP_852754.1| PREDICTED: similar to 14-3-3 protein beta/alpha (Protein kinase C
inhibitor protein-1) (KCIP-1) (Protein 1054) isoform 2
[Canis familiaris].
Length = 244
Score = 354 bits (909), Expect = 1e-97
Identities = 185/245 (75%), Positives = 210/245 (85%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 62 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q +E
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 237
Query: 908 -AGEG 919
AGEG
Sbjct: 238 DAGEG 242
>ref|XP_533072.2| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide isoform 1 [Canis
familiaris].
Length = 245
Score = 354 bits (908), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|XP_857778.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide isoform 3 [Canis
familiaris].
Length = 245
Score = 354 bits (908), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|XP_849044.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide isoform 2 [Canis
familiaris].
Length = 245
Score = 354 bits (908), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|XP_850323.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide [Canis familiaris].
Length = 289
Score = 347 bits (890), Expect = 2e-95
Identities = 179/249 (71%), Positives = 209/249 (83%)
Frame = +2
Query: 182 DMGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSS 361
+ G + +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSS
Sbjct: 43 ETGHKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSS 102
Query: 362 WRVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYES 541
WRV+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ES
Sbjct: 103 WRVVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAES 158
Query: 542 KVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNF 721
KVF LKMKGDYYRYLAEVA+G+ K +V+ S+ A +EAFEISK+ MQPTHPIRLGLALNF
Sbjct: 159 KVFCLKMKGDYYRYLAEVAAGDDKKGIVDQSQQANQEAFEISKKEMQPTHPIRLGLALNF 218
Query: 722 SVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD 901
SVFYYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q
Sbjct: 219 SVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQG 278
Query: 902 EEAGEGN*G 928
+EA G G
Sbjct: 279 DEAEAGEGG 287
>ref|XP_857819.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide isoform 4 [Canis
familiaris].
Length = 254
Score = 346 bits (888), Expect = 4e-95
Identities = 181/255 (70%), Positives = 210/255 (82%), Gaps = 9/255 (3%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKN---------SVVEASEAAYKEAFEISKEHMQPTHPIRL 703
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRL
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKVCFGMFYFPGIVDQSQQAYQEAFEISKKEMQPTHPIRL 177
Query: 704 GLALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLW 883
GLALNFSVFYYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLW
Sbjct: 178 GLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLW 237
Query: 884 TSDQQDEEAGEGN*G 928
TSD Q +EA G G
Sbjct: 238 TSDTQGDEAEAGEGG 252
>ref|XP_532871.1| PREDICTED: similar to 14-3-3 protein theta (14-3-3 protein tau)
(14-3-3 protein T-cell) (HS1 protein) isoform 1 [Canis
familiaris].
Length = 245
Score = 338 bits (868), Expect = 7e-93
Identities = 175/245 (71%), Positives = 203/245 (82%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYLAEVA G+ + ++ S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD EE
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEEC 237
Query: 908 -AGEG 919
A EG
Sbjct: 238 DAAEG 242
>ref|XP_857856.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide isoform 5 [Canis
familiaris].
Length = 229
Score = 338 bits (868), Expect = 7e-93
Identities = 172/231 (74%), Positives = 200/231 (86%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLW 883
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLT W
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTWW 228
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,568,751
Number of extensions: 1204489
Number of successful extensions: 3675
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 3621
Number of HSP's successfully gapped: 25
Length of query: 581
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 473
Effective length of database: 15,274,216
Effective search space: 7224704168
Effective search space used: 7224704168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012203
(1745 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928111.1| PREDICTED: 14-3-3 protein eta [Sus scrofa]. 485 e-137
Alignment gi|XP_003124444.2| PREDICTED: 14-3-3 protein gamma-like [Sus sc... 383 e-106
Alignment gi|XP_001927289.1| PREDICTED: 14-3-3 protein beta/alpha isoform... 353 2e-97
Alignment gi|XP_003125436.1| PREDICTED: 14-3-3 protein theta isoform 1 [S... 344 8e-95
Alignment gi|XP_003125437.2| PREDICTED: 14-3-3 protein theta isoform 2 [S... 338 4e-93
Alignment gi|NP_001038029.1| 14-3-3 protein sigma [Sus scrofa]. 308 5e-84
Alignment gi|XP_001927263.2| PREDICTED: 14-3-3 protein zeta/delta [Sus sc... 221 1e-57
Alignment gi|XP_003361720.1| PREDICTED: 14-3-3 protein epsilon-like [Sus ... 196 4e-50
Alignment gi|XP_003354973.1| PREDICTED: 14-3-3 protein theta-like [Sus sc... 186 4e-47
Alignment gi|XP_003354980.1| PREDICTED: 14-3-3 protein theta-like [Sus sc... 134 2e-31
>ref|XP_001928111.1| PREDICTED: 14-3-3 protein eta [Sus scrofa].
Length = 246
Score = 485 bits (1248), Expect = e-137
Identities = 246/246 (100%), Positives = 246/246 (100%)
Frame = +2
Query: 185 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 364
MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
Sbjct: 1 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 60
Query: 365 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 544
RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK
Sbjct: 61 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 120
Query: 545 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 724
VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS
Sbjct: 121 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 180
Query: 725 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 904
VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
Sbjct: 181 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 240
Query: 905 EAGEGN 922
EAGEGN
Sbjct: 241 EAGEGN 246
>ref|XP_003124444.2| PREDICTED: 14-3-3 protein gamma-like [Sus scrofa].
Length = 241
Score = 383 bits (984), Expect = e-106
Identities = 190/217 (87%), Positives = 204/217 (94%)
Frame = +2
Query: 272 VTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKLEKVKAYREKI 451
VTELNEPLSNE+RNLLSVAYKNVVGARRSSWRVISSIEQKT ADGNEKK+E V+AYREKI
Sbjct: 24 VTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKI 83
Query: 452 EKELETVCNDVLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEA 631
EKELE VC DVL+LLD +LIKNC++ QYESKVFYLKMKGDYYRYLAEVA+GEK+ +VVE+
Sbjct: 84 EKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVES 143
Query: 632 SEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELD 811
SE AY EA EISKEHMQPTHPIRLGLALN+SVFYYEIQNAPEQAC LAK AFDDAIAELD
Sbjct: 144 SEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELD 203
Query: 812 TLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEAGEGN 922
TLNEDSYKDSTLIMQLLRDNLTLWTSDQQD++ GEGN
Sbjct: 204 TLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGN 240
>ref|XP_001927289.1| PREDICTED: 14-3-3 protein beta/alpha isoform 1 [Sus scrofa].
Length = 246
Score = 353 bits (905), Expect = 2e-97
Identities = 182/243 (74%), Positives = 207/243 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 4 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 63
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 64 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 119
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 120 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 179
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q +E
Sbjct: 180 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 239
Query: 911 GEG 919
G
Sbjct: 240 DTG 242
>ref|XP_003125436.1| PREDICTED: 14-3-3 protein theta isoform 1 [Sus scrofa].
Length = 246
Score = 344 bits (883), Expect = 8e-95
Identities = 178/247 (72%), Positives = 205/247 (82%), Gaps = 2/247 (0%)
Frame = +2
Query: 185 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 364
MGD+ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+W
Sbjct: 1 MGDKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAW 60
Query: 365 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 544
RVISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESK
Sbjct: 61 RVISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESK 116
Query: 545 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 724
VFYLKMKGDY+RYLAEVA G+ + ++ S+ AY+EAF+ISK+ MQPTHPIRLGLALNFS
Sbjct: 117 VFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFS 176
Query: 725 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 904
VFYYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E
Sbjct: 177 VFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGE 236
Query: 905 E--AGEG 919
E A EG
Sbjct: 237 ECDAAEG 243
>ref|XP_003125437.2| PREDICTED: 14-3-3 protein theta isoform 2 [Sus scrofa].
Length = 245
Score = 338 bits (868), Expect = 4e-93
Identities = 175/245 (71%), Positives = 203/245 (82%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYLAEVA G+ + ++ S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD EE
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEEC 237
Query: 908 -AGEG 919
A EG
Sbjct: 238 DAAEG 242
>ref|NP_001038029.1| 14-3-3 protein sigma [Sus scrofa].
Length = 248
Score = 308 bits (790), Expect = 5e-84
Identities = 154/242 (63%), Positives = 197/242 (81%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
+R ++Q+A+LAEQAERY+DMA+ MK+ E E LS E+RNLLSVAYKNVVG +R++WRV
Sbjct: 2 ERASVIQKAKLAEQAERYEDMAAFMKSAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQK+ +G+E+K +V+ YREK+EKEL VC+ VL LL+ LIK D ES+VF
Sbjct: 62 LSSIEQKSNEEGSEEKGPEVREYREKVEKELRGVCDTVLGLLNTHLIKEAGDA--ESRVF 119
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +++++ +AY+EA +ISK+ M PT+PIRLGLALNF VF
Sbjct: 120 YLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFYVF 179
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
+YEI N+PE+A LAK FD+A+A+L TL+EDSYKDSTLIMQLLRDNLTLWT+D EE
Sbjct: 180 HYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEG 239
Query: 911 GE 916
GE
Sbjct: 240 GE 241
>ref|XP_001927263.2| PREDICTED: 14-3-3 protein zeta/delta [Sus scrofa].
Length = 286
Score = 221 bits (563), Expect = 1e-57
Identities = 112/150 (74%), Positives = 128/150 (85%)
Frame = +2
Query: 479 DVLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAF 658
D +LL+KFLI N + Q ESKVFYLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAF
Sbjct: 137 DAKSLLEKFLIPNAS--QAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAF 194
Query: 659 EISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKD 838
EISK+ MQPTHPIRLGLALNFSVFYYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKD
Sbjct: 195 EISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKD 254
Query: 839 STLIMQLLRDNLTLWTSDQQDEEAGEGN*G 928
STLIMQLLRDNLTLWTSD Q +EA G G
Sbjct: 255 STLIMQLLRDNLTLWTSDTQGDEAEAGEGG 284
>ref|XP_003361720.1| PREDICTED: 14-3-3 protein epsilon-like [Sus scrofa].
Length = 232
Score = 196 bits (497), Expect = 4e-50
Identities = 100/183 (54%), Positives = 128/183 (69%)
Frame = +2
Query: 251 MASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKLEKV 430
M +MK V ++ L+ E+RNLLSVAYKNV+GARR+SWR+ISSIEQK G E KL+ +
Sbjct: 1 MVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 60
Query: 431 KAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEK 610
+ YR+ +E EL+ +C D+L +LDK LI N ESKVFY KMKGDY+RYLAE A+G
Sbjct: 61 REYRQMVETELKLICCDILDVLDKHLIPAANTG--ESKVFYYKMKGDYHRYLAEFATGND 118
Query: 611 KNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFD 790
+ E S AYK A +I+ + PTHPIRLGLALNFSVFYYEI N+P++AC K
Sbjct: 119 RKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACREEKNGMR 178
Query: 791 DAI 799
+ +
Sbjct: 179 ELV 181
>ref|XP_003354973.1| PREDICTED: 14-3-3 protein theta-like [Sus scrofa].
Length = 125
Score = 186 bits (472), Expect = 4e-47
Identities = 93/122 (76%), Positives = 103/122 (84%), Gaps = 2/122 (1%)
Frame = +2
Query: 560 MKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYE 739
MKGDY+RYLAEVA G+ + ++ S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVFYYE
Sbjct: 1 MKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYE 60
Query: 740 IQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE--AG 913
I N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD EE A
Sbjct: 61 ILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAA 120
Query: 914 EG 919
EG
Sbjct: 121 EG 122
>ref|XP_003354980.1| PREDICTED: 14-3-3 protein theta-like [Sus scrofa].
Length = 152
Score = 134 bits (337), Expect = 2e-31
Identities = 67/99 (67%), Positives = 83/99 (83%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVL 487
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVL 98
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,491,554
Number of extensions: 777393
Number of successful extensions: 2365
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2351
Number of HSP's successfully gapped: 10
Length of query: 581
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 477
Effective length of database: 8,754,644
Effective search space: 4175965188
Effective search space used: 4175965188
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012203
(1745 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035868.1| 14-3-3 protein eta [Mus musculus]. 485 e-137
Alignment gi|NP_061359.2| 14-3-3 protein gamma [Mus musculus]. 428 e-120
Alignment gi|NP_061223.2| 14-3-3 protein beta/alpha [Mus musculus]. 355 5e-98
Alignment gi|NP_035870.1| 14-3-3 protein zeta/delta [Mus musculus]. 353 2e-97
Alignment gi|XP_001473550.2| PREDICTED: 14-3-3 protein theta-like [Mus mu... 340 3e-93
Alignment gi|XP_003085851.1| PREDICTED: 14-3-3 protein theta-like [Mus mu... 340 3e-93
Alignment gi|XP_003085853.1| PREDICTED: 14-3-3 protein theta-like [Mus mu... 340 3e-93
Alignment gi|XP_003085854.1| PREDICTED: 14-3-3 protein theta-like [Mus mu... 340 3e-93
Alignment gi|XP_003085852.1| PREDICTED: 14-3-3 protein theta-like [Mus mu... 340 3e-93
Alignment gi|XP_003085850.1| PREDICTED: 14-3-3 protein theta-like [Mus mu... 340 3e-93
>ref|NP_035868.1| 14-3-3 protein eta [Mus musculus].
Length = 246
Score = 485 bits (1248), Expect = e-137
Identities = 246/246 (100%), Positives = 246/246 (100%)
Frame = +2
Query: 185 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 364
MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
Sbjct: 1 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 60
Query: 365 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 544
RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK
Sbjct: 61 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 120
Query: 545 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 724
VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS
Sbjct: 121 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 180
Query: 725 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 904
VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
Sbjct: 181 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 240
Query: 905 EAGEGN 922
EAGEGN
Sbjct: 241 EAGEGN 246
>ref|NP_061359.2| 14-3-3 protein gamma [Mus musculus].
Length = 247
Score = 428 bits (1101), Expect = e-120
Identities = 214/246 (86%), Positives = 231/246 (93%)
Frame = +2
Query: 185 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 364
M DREQL+Q+ARLAEQAERYDDMA+AMK VTELNEPLSNE+RNLLSVAYKNVVGARRSSW
Sbjct: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW 60
Query: 365 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 544
RVISSIEQKT ADGNEKK+E V+AYREKIEKELE VC DVL+LLD +LIKNC++ QYESK
Sbjct: 61 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
Query: 545 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 724
VFYLKMKGDYYRYLAEVA+GEK+ +VVE+SE AY EA EISKEHMQPTHPIRLGLALN+S
Sbjct: 121 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
Query: 725 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 904
VFYYEIQNAPEQAC LAK AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD+
Sbjct: 181 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
Query: 905 EAGEGN 922
+ GEGN
Sbjct: 241 DGGEGN 246
>ref|NP_061223.2| 14-3-3 protein beta/alpha [Mus musculus].
Length = 246
Score = 355 bits (912), Expect = 5e-98
Identities = 186/245 (75%), Positives = 210/245 (85%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 4 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 63
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 64 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLILNAT--QAESKVF 119
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYL+EVASGE K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 120 YLKMKGDYFRYLSEVASGENKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 179
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q +E
Sbjct: 180 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 239
Query: 908 -AGEG 919
AGEG
Sbjct: 240 DAGEG 244
>ref|NP_035870.1| 14-3-3 protein zeta/delta [Mus musculus].
Length = 245
Score = 353 bits (907), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QPESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|XP_001473550.2| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 319
Score = 340 bits (871), Expect = 3e-93
Identities = 179/253 (70%), Positives = 206/253 (81%), Gaps = 2/253 (0%)
Frame = +2
Query: 167 RPSHSDMGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVG 346
R S S ++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG
Sbjct: 68 RRSPSLAMEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVG 127
Query: 347 ARRSSWRVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCND 526
RRS+WRVISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N +
Sbjct: 128 GRRSAWRVISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN 185
Query: 527 FQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLG 706
ESKVFYLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLG
Sbjct: 186 --PESKVFYLKMKGDYFRYLAEVACGDDQKQTIENSQGAYQEAFDISKKEMQPTHPIRLG 243
Query: 707 LALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWT 886
LALNFSVFYYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWT
Sbjct: 244 LALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWT 303
Query: 887 SDQQDEE--AGEG 919
SD EE A EG
Sbjct: 304 SDSAGEECDAAEG 316
>ref|XP_003085851.1| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 245
Score = 340 bits (871), Expect = 3e-93
Identities = 176/245 (71%), Positives = 203/245 (82%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD EE
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEEC 237
Query: 908 -AGEG 919
A EG
Sbjct: 238 DAAEG 242
>ref|XP_003085853.1| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 245
Score = 340 bits (871), Expect = 3e-93
Identities = 176/245 (71%), Positives = 203/245 (82%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD EE
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEEC 237
Query: 908 -AGEG 919
A EG
Sbjct: 238 DAAEG 242
>ref|XP_003085854.1| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 245
Score = 340 bits (871), Expect = 3e-93
Identities = 176/245 (71%), Positives = 203/245 (82%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD EE
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEEC 237
Query: 908 -AGEG 919
A EG
Sbjct: 238 DAAEG 242
>ref|XP_003085852.1| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 245
Score = 340 bits (871), Expect = 3e-93
Identities = 176/245 (71%), Positives = 203/245 (82%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD EE
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEEC 237
Query: 908 -AGEG 919
A EG
Sbjct: 238 DAAEG 242
>ref|XP_003085850.1| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 245
Score = 340 bits (871), Expect = 3e-93
Identities = 176/245 (71%), Positives = 203/245 (82%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD EE
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEEC 237
Query: 908 -AGEG 919
A EG
Sbjct: 238 DAAEG 242
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,669,616
Number of extensions: 1016466
Number of successful extensions: 3087
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3059
Number of HSP's successfully gapped: 14
Length of query: 581
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 474
Effective length of database: 12,403,707
Effective search space: 5879357118
Effective search space used: 5879357118
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012203
(1745 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003396.1| 14-3-3 protein eta [Homo sapiens]. 481 e-135
Alignment gi|NP_036611.2| 14-3-3 protein gamma [Homo sapiens]. 428 e-120
Alignment gi|NP_003395.1| 14-3-3 protein beta/alpha [Homo sapiens]. 354 1e-97
Alignment gi|NP_647539.1| 14-3-3 protein beta/alpha [Homo sapiens]. 354 1e-97
Alignment gi|NP_001129174.1| 14-3-3 protein zeta/delta [Homo sapiens]. 354 2e-97
Alignment gi|NP_001129173.1| 14-3-3 protein zeta/delta [Homo sapiens]. 354 2e-97
Alignment gi|NP_001129172.1| 14-3-3 protein zeta/delta [Homo sapiens]. 354 2e-97
Alignment gi|NP_001129171.1| 14-3-3 protein zeta/delta [Homo sapiens]. 354 2e-97
Alignment gi|NP_663723.1| 14-3-3 protein zeta/delta [Homo sapiens]. 354 2e-97
Alignment gi|NP_003397.1| 14-3-3 protein zeta/delta [Homo sapiens]. 354 2e-97
>ref|NP_003396.1| 14-3-3 protein eta [Homo sapiens].
Length = 246
Score = 481 bits (1237), Expect = e-135
Identities = 244/246 (99%), Positives = 245/246 (99%)
Frame = +2
Query: 185 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 364
MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
Sbjct: 1 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 60
Query: 365 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 544
RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVL+LLDKFLIKNCNDFQYESK
Sbjct: 61 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK 120
Query: 545 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 724
VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKE MQPTHPIRLGLALNFS
Sbjct: 121 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS 180
Query: 725 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 904
VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
Sbjct: 181 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 240
Query: 905 EAGEGN 922
EAGEGN
Sbjct: 241 EAGEGN 246
>ref|NP_036611.2| 14-3-3 protein gamma [Homo sapiens].
Length = 247
Score = 428 bits (1101), Expect = e-120
Identities = 214/246 (86%), Positives = 231/246 (93%)
Frame = +2
Query: 185 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 364
M DREQL+Q+ARLAEQAERYDDMA+AMK VTELNEPLSNE+RNLLSVAYKNVVGARRSSW
Sbjct: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW 60
Query: 365 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 544
RVISSIEQKT ADGNEKK+E V+AYREKIEKELE VC DVL+LLD +LIKNC++ QYESK
Sbjct: 61 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
Query: 545 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 724
VFYLKMKGDYYRYLAEVA+GEK+ +VVE+SE AY EA EISKEHMQPTHPIRLGLALN+S
Sbjct: 121 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
Query: 725 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 904
VFYYEIQNAPEQAC LAK AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD+
Sbjct: 181 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
Query: 905 EAGEGN 922
+ GEGN
Sbjct: 241 DGGEGN 246
>ref|NP_003395.1| 14-3-3 protein beta/alpha [Homo sapiens].
Length = 246
Score = 354 bits (909), Expect = 1e-97
Identities = 185/245 (75%), Positives = 210/245 (85%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 4 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 63
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 64 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 119
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 120 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 179
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q +E
Sbjct: 180 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 239
Query: 908 -AGEG 919
AGEG
Sbjct: 240 DAGEG 244
>ref|NP_647539.1| 14-3-3 protein beta/alpha [Homo sapiens].
Length = 246
Score = 354 bits (909), Expect = 1e-97
Identities = 185/245 (75%), Positives = 210/245 (85%), Gaps = 2/245 (0%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 4 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 63
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 64 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 119
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 120 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 179
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEE- 907
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q +E
Sbjct: 180 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 239
Query: 908 -AGEG 919
AGEG
Sbjct: 240 DAGEG 244
>ref|NP_001129174.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 354 bits (908), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|NP_001129173.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 354 bits (908), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|NP_001129172.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 354 bits (908), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|NP_001129171.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 354 bits (908), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|NP_663723.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 354 bits (908), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
>ref|NP_003397.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 354 bits (908), Expect = 2e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +2
Query: 191 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 370
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 371 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 550
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 551 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 730
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 731 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEA 910
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +EA
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 911 GEGN*G 928
G G
Sbjct: 238 EAGEGG 243
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,660,218
Number of extensions: 1190393
Number of successful extensions: 3695
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3615
Number of HSP's successfully gapped: 13
Length of query: 581
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 473
Effective length of database: 14,737,052
Effective search space: 6970625596
Effective search space used: 6970625596
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012203
(1745 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 2781 0.0
Sscrofa_Chr03 254 1e-64
gb|GL894571.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 100 5e-18
Sscrofa_Chr17 82 1e-12
Sscrofa_Chr06 76 7e-11
>Sscrofa_Chr14
|| Length = 153851969
Score = 2781 bits (1403), Expect = 0.0
Identities = 1439/1454 (98%), Gaps = 1/1454 (0%)
Strand = Plus / Plus
Query: 271 ggtgacagagctcaatgaacctctctccaatgaggaccgaaacctcctctctgtggccta 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872327 ggtgacagagctcaatgaacctctctccaatgaggaccgaaacctcctctctgtggccta 51872386
Query: 331 caagaatgtggtcggtgcccggcggtcttcctggagggtcatcagcagcattgagcagaa 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872387 caagaatgtggtcggtgcccggcggtcttcctggagggtcatcagcagcattgagcagaa 51872446
Query: 391 aaccatggccgacgggaacgagaagaagttggagaaggttaaggcttaccgggagaagat 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872447 aaccatggccgacgggaacgagaagaagttggagaaggttaaggcttaccgggagaagat 51872506
Query: 451 agagaaggagctggagacggtgtgcaatgatgtgctggctttgctagacaagttcctcat 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872507 agagaaggagctggagacggtgtgcaatgatgtgctggctttgctagacaagttcctcat 51872566
Query: 511 caagaactgcaatgatttccagtacgagagcaaggtcttctacctgaagatgaagggcga 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872567 caagaactgcaatgatttccagtacgagagcaaggtcttctacctgaagatgaagggcga 51872626
Query: 571 ttactaccgctacctggccgaggtggcttctggggagaagaaaaacagcgtggttgaagc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872627 ttactaccgctacctggccgaggtggcttctggggagaagaaaaacagcgtggttgaagc 51872686
Query: 631 ttcagaggctgcctacaaggaagcctttgaaattagcaaagagcacatgcagccgacaca 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872687 ttcagaggctgcctacaaggaagcctttgaaattagcaaagagcacatgcagccgacaca 51872746
Query: 691 ccccatccggctgggcctggccctcaacttctccgtgttctactatgagatccagaacgc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872747 ccccatccggctgggcctggccctcaacttctccgtgttctactatgagatccagaacgc 51872806
Query: 751 accggagcaggcctgtctcttagccaaacaggcctttgatgacgccatagccgagctgga 810
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 51872807 accggagcaggcctgtctcttagccaaacaggcctttgacgacgccatagccgagctgga 51872866
Query: 811 cacactaaatgaggattcctataaggactccacgctcatcatgcagctgctgcgagataa 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872867 cacactaaatgaggattcctataaggactccacgctcatcatgcagctgctgcgagataa 51872926
Query: 871 cctcaccctctggaccagcgaccagcaggacgaagaagccggagaaggcaactgaggctc 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872927 cctcaccctctggaccagcgaccagcaggacgaagaagccggagaaggcaactgaggctc 51872986
Query: 931 cctgacctgccccgcccccgccccatcaccaccggtccttcctcgccacagtcactcagt 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872987 cctgacctgccccgcccccgccccatcaccaccggtccttcctcgccacagtcactcagt 51873046
Query: 991 atccagtgctaaacctatgtgtatgacagcacagctactcagatctgctctccgcccctg 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873047 atccagtgctaaacctatgtgtatgacagcacagctactcagatctgctctccgcccctg 51873106
Query: 1051 ggaagcagttccagataaatttatgggcattgctggactgatgattgctttgagaccacg 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873107 ggaagcagttccagataaatttatgggcattgctggactgatgattgctttgagaccacg 51873166
Query: 1111 ggagctcccttttcgaattgagcagacaggtgcgttctgaaggaggcatttcaccatgcc 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873167 ggagctcccttttcgaattgagcagacaggtgcgttctgaaggaggcatttcaccatgcc 51873226
Query: 1171 tgcagtctaggtgaattgcaggtaaaagcagtggggaagttagaaactagaaaggagact 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873227 tgcagtctaggtgaattgcaggtaaaagcagtggggaagttagaaactagaaaggagact 51873286
Query: 1231 cagcctttaacaggccacagttggtatttaaatggtccatttaaaacaagctgatagtgt 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873287 cagcctttaacaggccacagttggtatttaaatggtccatttaaaacaagctgatagtgt 51873346
Query: 1291 tttgttaagcagtacatctgtgcatgcaaaaatgaattcgcccctcccacctctttcttc 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873347 tttgttaagcagtacatctgtgcatgcaaaaatgaattcgcccctcccacctctttcttc 51873406
Query: 1351 agctaatggaaaacttaggggaagctgagatgaagagaccacttgctcctttccatccgc 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873407 agctaatggaaaacttaggggaagctgagatgaagagaccacttgctcctttccatccgc 51873466
Query: 1411 ttggtaataaactgtttaatgtgaggtttcagtagcgccttgttttgcctctttaaatta 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873467 ttggtaataaactgtttaatgtgaggtttcagtagcgccttgttttgcctctttaaatta 51873526
Query: 1471 tgacgtgcacaaccttcttttcaatgcaatgcatctaaagttttgatacctgtaccnnnn 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873527 tgacgtgcacaaccttcttttcaatgcaatgcatctaaagttttgatacctgtacc-ttt 51873585
Query: 1531 nnnnnnnnnnggttgcgattgtttaagaatcatggatttattttttgtaactctttggct 1590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873586 ttttttttttggttgcgattgtttaagaatcatggatttattttttgtaactctttggct 51873645
Query: 1591 gttgtccttgtgtatcctgacagcaccatgtgtgtcagcccatgtcaatcaagatgggta 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873646 gttgtccttgtgtatcctgacagcaccatgtgtgtcagcccatgtcaatcaagatgggta 51873705
Query: 1651 attatgaaatgccagacttctaaattaaatgttttggaattcagtgggtaaataaatgct 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873706 attatgaaatgccagacttctaaattaaatgttttggaattcagtgggtaaataaatgct 51873765
Query: 1711 gctttggggatatt 1724
||||||||||||||
Sbjct: 51873766 gctttggggatatt 51873779
Score = 276 bits (139), Expect = 4e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 137 tagcaagcgagtggagctgggcgcgaggcgaggccgagccatagcgacatgggggaccgc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51861581 tagcaagcgagtggagctgggcgcgaggcgaggccgagccatagcgacatgggggaccgc 51861640
Query: 197 gaacagctgctgcagcgggcgcggctggccgagcaggcggagcgctacgacgacatggcc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51861641 gaacagctgctgcagcgggcgcggctggccgagcaggcggagcgctacgacgacatggcc 51861700
Query: 257 tccgccatgaaggcggtga 275
|||||||||||||||||||
Sbjct: 51861701 tccgccatgaaggcggtga 51861719
Score = 212 bits (107), Expect = 5e-52
Identities = 539/680 (79%), Gaps = 37/680 (5%)
Strand = Plus / Minus
Query: 1051 ggaagcagttccagataaatttatgggcattgctggactgat----gattgctttgagac 1106
|||||||||||| ||||||| ||||||||||||||||||| | ||||||||||
Sbjct: 100162352 ggaagcagttcccaataaattcatgggcattgctggactgactgccggttgctttgagct 100162293
Query: 1107 cacgggagctcccttttcgaattgagcagacaggtgcgttctgaaggaggcatttcacca 1166
|||||||||||||||||||||||| | | ||||||| |||||||||| |||||| |
Sbjct: 100162292 cacgggagctcccttttcgaattgtgtacacaggtgagttctgaaggttgcattttgtta 100162233
Query: 1167 tgcctgcag-tctaggtgaattgcaggtaaaagcagtggggaagttagaaactagaaagg 1225
||||||| | | |||||||| ||| || |||||| | ||| |||| |||| ||
Sbjct: 100162232 tgcctgctgatgtaggtgaaatgcgggagaaagcactaggggagttggaaa-------gg 100162180
Query: 1226 agactcagcctttaacaggccacagttggtatttaaatggtccatttaaaacaagctgat 1285
||| | | || | ||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct: 100162179 agaattaaccaatg-caggctatagttggtatttaaatgatccatttaaaacaagctgat 100162121
Query: 1286 agtgttttgttaagcagtacatctgtgcatgcaaaaatgaattcgcccctcccacctctt 1345
||||||||||| |||| |||| | || ||||||||||| ||| ||||| || ||| |
Sbjct: 100162120 agtgttttgtttagcaatacagtttagcgtgcaaaaatgatttcatccctctcatctcat 100162061
Query: 1346 tcttcagctaatggaaaact--taggggaagctgagatgaagagaccacttgctcctttc 1403
|||||||||| ||| ||||| || ||||||||||||| |||||||| |||||
Sbjct: 100162060 tcttcagctagtgggaaactgttaagggaagctgagat--------cacttgcttctttc 100162009
Query: 1404 catccgcttggtaataaactgtttaatgtgaggtttcagtagcgccttgttttgcctctt 1463
||| | || ||| ||| ||| |||||||||||||| |||||||||||||||||
Sbjct: 100162008 tatcaggttcataa----ctgcctaacatgaggtttcagtagtgccttgttttgcctctt 100161953
Query: 1464 taaattatgacgtgcacaa-ccttcttttcaatgcaatgcatctaaagttttgatacctg 1522
|||||||||| ||||| || ||||||||||||||||||||||||| | |||||||||||
Sbjct: 100161952 taaattatgatgtgcataaaccttcttttcaatgcaatgcatcta--ggtttgatacctg 100161895
Query: 1523 taccnnnnnnnnnnnnnnggttgcgattgtttaagaatcatggatttattttttgtaact 1582
| | || | |||||||| ||||||||||||| ||||| |||| |
Sbjct: 100161894 caactttttctta------gtagtgattgttttagaatcatggattaattttc-gtaatt 100161842
Query: 1583 ctttggctgttgtccttgtgtatcctgacagcaccatgtgtgtcagcccatgtcaatcaa 1642
|||| ||| |||||||||| |||||||||||||| |||||||||| |||||| |
Sbjct: 100161841 ttttgatgattgcccttgtgtattctgacagcaccatgcatgtcagcccacatcaatcca 100161782
Query: 1643 gatgggtaattatgaaatgccagacttctaaattaaatgttttggaattcagtgggtaaa 1702
||| ||| |||||||||||||| ||||||||||||| |||||||||||| || |||||
Sbjct: 100161781 gattggtgtttatgaaatgccaggcttctaaattaaacattttggaattcaatgagtaaa 100161722
Query: 1703 taaatgctgctttggggata 1722
|||||| |||||||||||||
Sbjct: 100161721 taaatgttgctttggggata 100161702
Score = 190 bits (96), Expect = 2e-45
Identities = 138/151 (91%), Gaps = 2/151 (1%)
Strand = Plus / Minus
Query: 1573 ttttgtaactctttggctgttgtccttgtgtatcctgacagcaccatgtgtgtcagccca 1632
|||||||||||||||||| | ||||||||||||||||||||| ||| |||||||||||||
Sbjct: 41248231 ttttgtaactctttggctatcgtccttgtgtatcctgacagcgccaagtgtgtcagccca 41248172
Query: 1633 tgtcaatcaagatgggtaattatgaaatgccagacttctaaattaaatgttttggaattc 1692
||||||||| ||||||| |||| ||||||||||| || |||||||||||||||||||
Sbjct: 41248171 tgtcaatcatgatgggtgattacaaaatgccagac--atatattaaatgttttggaattc 41248114
Query: 1693 agtgggtaaataaatgctgctttggggatat 1723
|||||||||||||||||| ||||||||||||
Sbjct: 41248113 agtgggtaaataaatgctactttggggatat 41248083
Score = 153 bits (77), Expect = 4e-34
Identities = 247/301 (82%), Gaps = 2/301 (0%)
Strand = Plus / Minus
Query: 373 cagcagcattgagcagaaaaccatggccga-cgggaacgagaagaagttggagaaggtta 431
||||||||| ||||||||||||| ||| | ||| || ||||||| |||| |||||
Sbjct: 100163010 cagcagcatggagcagaaaaccacggctaaacggaaatgagaagagactggatgaggttc 100162951
Query: 432 aggcttaccgggagaagatagagaaggagctggagacggtgtgcaatgatgtgctggctt 491
||||||||||||||| ||| | || ||||||||| | ||||||||| || |||||| |
Sbjct: 100162950 aggcttaccgggagaggatggcgagggagctggaaatggtgtgcaacgacgtgctgagtc 100162891
Query: 492 tgctagacaagttcctcatcaagaactgcaatgatttccagtacgagagcaaggtcttct 551
||| |||||||||||||| ||||| |||| |||||||||| | |||||||||| |||||
Sbjct: 100162890 tgccagacaagttcctcacgaagaattgcagtgatttccagaatgagagcaaggacttct 100162831
Query: 552 acctgaagatgaagggcgattactaccgctacctggccgaggtggcttctggggagaaga 611
||||||| ||||| ||| | ||||||||||||||||| |||| |||| | | ||||||
Sbjct: 100162830 acctgaaaatgaa-ggcaactactaccgctacctggcagaggcggctccctgagagaagc 100162772
Query: 612 aaaacagcgtggttgaagcttcagaggctgcctacaaggaagcctttgaaattagcaaag 671
|||||| | ||| ||||| | | |||||||||||||||||||| ||||| |||||||
Sbjct: 100162771 caaacagtgcggtcgaagcatggggcgctgcctacaaggaagccttcgaaatcagcaaag 100162712
Query: 672 a 672
|
Sbjct: 100162711 a 100162711
Score = 133 bits (67), Expect = 4e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 tgcgagccacagcgcgcgaggcgagccagcgagaggtcgatcggtgctgcctgctgcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51861445 tgcgagccacagcgcgcgaggcgagccagcgagaggtcgatcggtgctgcctgctgcttg 51861504
Query: 61 tagccta 67
|||||||
Sbjct: 51861505 tagccta 51861511
Score = 121 bits (61), Expect = 1e-24
Identities = 97/108 (89%), Gaps = 2/108 (1%)
Strand = Plus / Minus
Query: 1273 aaaacaagctgatagtgttttgttaagcagtacatctgtgcatgcaaaaatgaattcgcc 1332
||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||
Sbjct: 41249036 aaaacaagctgatagcatttccttaagcagtactgctgtgcatgcaaaaatgaattcacc 41248977
Query: 1333 cctcccacctctttcttcagctaatggaaaacttaggggaagctgaga 1380
|||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 41248976 cctctcacctctttcttcagctaatggagaac--aggggaagctgaga 41248931
Score = 115 bits (58), Expect = 8e-23
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 833 aaggactccacgctcatcatgcagctgctgcgagataacctcaccctctggaccagcgac 892
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 41249349 aaggactccacgctcatcatgcagctgctgcgagacaacctcaccctctgggccagcgac 41249290
Query: 893 cagcaggacgaagaagccggagaaggcaac 922
| | ||||| |||||| |||||||||||
Sbjct: 41249289 ccgtaggactgggaagccagagaaggcaac 41249260
Score = 103 bits (52), Expect = 3e-19
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 291 ctctctccaatgaggaccgaaacctcctctctgtggcctacaagaatgtggtcggtgccc 350
|||||||||| | |||||||| |||||||| | |||||| ||||| |||||||||||||
Sbjct: 41249846 ctctctccaacaaagaccgaaatctcctctccgaggcctaaaagaacgtggtcggtgccc 41249787
Query: 351 ggcggtcttcctggagggtcatcagcagcattgagc 386
|||||||||||||||||||| ||||||| ||||||
Sbjct: 41249786 ggcggtcttcctggagggtccgcagcagccttgagc 41249751
Score = 79.8 bits (40), Expect = 5e-12
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 1453 ttttgcctctttaaattatgacgtgcacaaccttcttttcaatgcaatgcatctaaagtt 1512
|||| ||||||||||||||||| || |||| | ||||||||||||||||||||||| ||
Sbjct: 41248621 ttttccctctttaaattatgacatggacaaac--cttttcaatgcaatgcatctaaaatt 41248564
Query: 1513 ttgatacctgt 1523
|||||||||||
Sbjct: 41248563 ttgatacctgt 41248553
Score = 67.9 bits (34), Expect = 2e-08
Identities = 115/141 (81%), Gaps = 7/141 (4%)
Strand = Plus / Minus
Query: 201 agctgctgcagcgggcgcggctggcc-----gagcaggcggagcgctacgacgacatggc 255
|||||||||||| ||||||||||||| ||| ||| ||| | || |||||| ||||
Sbjct: 100163162 agctgctgcagcaggcgcggctggcctagacgagatggcagagtgttaggacgacgtggc 100163103
Query: 256 ctccgccatgaaggcggtgacagagctcaatgaacctctctccaatgaggaccgaaacct 315
||||| ||||||||||||||| | ||||| |||||||| |||| | |||||||||||
Sbjct: 100163102 ctccgtcatgaaggcggtgaccaatctcaacaaacctctc--caataaagaccgaaacct 100163045
Query: 316 cctctctgtggcctacaagaa 336
|| || ||||||||||||||
Sbjct: 100163044 ccccttcgtggcctacaagaa 100163024
>Sscrofa_Chr03
|| Length = 144787322
Score = 254 bits (128), Expect = 1e-64
Identities = 521/652 (79%)
Strand = Plus / Plus
Query: 271 ggtgacagagctcaatgaacctctctccaatgaggaccgaaacctcctctctgtggccta 330
|||||||||||| ||||| || || |||||||| || ||||||| ||||||||||| ||
Sbjct: 9907724 ggtgacagagctgaatgagccactgtccaatgaagaaagaaaccttctctctgtggctta 9907783
Query: 331 caagaatgtggtcggtgcccggcggtcttcctggagggtcatcagcagcattgagcagaa 390
||||||||| ||||| || || || ||||||||||||||||| || ||||||||||||||
Sbjct: 9907784 caagaatgtagtcggggcgcgccgttcttcctggagggtcattagtagcattgagcagaa 9907843
Query: 391 aaccatggccgacgggaacgagaagaagttggagaaggttaaggcttaccgggagaagat 450
||| || || || || ||||||||| | |||| ||| |||||||| || || ||
Sbjct: 9907844 gacctctgcagatggcaatgagaagaagatagagatggtccgtgcttaccgtgaaaaaat 9907903
Query: 451 agagaaggagctggagacggtgtgcaatgatgtgctggctttgctagacaagttcctcat 510
|||||||||| ||||| | || || | ||||||||| |||| || || | ||| ||
Sbjct: 9907904 agagaaggagttggaggccgtatgtcaggatgtgctgagcctgctggataactacctgat 9907963
Query: 511 caagaactgcaatgatttccagtacgagagcaaggtcttctacctgaagatgaagggcga 570
|||||| |||| || |||||| |||||||| || ||||||||||||||||| || ||
Sbjct: 9907964 caagaattgcagcgagacccagtatgagagcaaagtgttctacctgaagatgaaagggga 9908023
Query: 571 ttactaccgctacctggccgaggtggcttctggggagaagaaaaacagcgtggttgaagc 630
|| ||||||||||||||||| || || |||| ||||||| | ||| || || |
Sbjct: 9908024 ctattaccgctacctggccgaagtagccactggagagaagagggcgaccgtcgtggagtc 9908083
Query: 631 ttcagaggctgcctacaaggaagcctttgaaattagcaaagagcacatgcagccgacaca 690
|| ||| ||||| | |||||| ||| || ||||| |||||||||||||| || ||
Sbjct: 9908084 gtctgagaaggcctatagcgaagcccatgagatcagcaaggagcacatgcagcccactca 9908143
Query: 691 ccccatccggctgggcctggccctcaacttctccgtgttctactatgagatccagaacgc 750
|||||| | | ||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct: 9908144 ccccattagattaggcctggcccttaactactccgttttctactatgagatccagaacgc 9908203
Query: 751 accggagcaggcctgtctcttagccaaacaggcctttgatgacgccatagccgagctgga 810
|||||||| ||||| | ||| ||||| || || ||||||||||| |||||||| ||
Sbjct: 9908204 cccggagcaagcctgccacttggccaagaccgctttcgatgacgccatcgccgagcttga 9908263
Query: 811 cacactaaatgaggattcctataaggactccacgctcatcatgcagctgctgcgagataa 870
||| || || ||||| ||||| |||||||||||||||||||||||||| || || || ||
Sbjct: 9908264 caccctcaacgaggactcctacaaggactccacgctcatcatgcagctcctccgcgacaa 9908323
Query: 871 cctcaccctctggaccagcgaccagcaggacgaagaagccggagaaggcaac 922
|||||| |||||||| ||||| ||||| ||||| || | ||||||||||||
Sbjct: 9908324 cctcacgctctggacaagcgatcagcaagacgacgacggtggagaaggcaac 9908375
Score = 151 bits (76), Expect = 2e-33
Identities = 185/220 (84%), Gaps = 1/220 (0%)
Strand = Plus / Plus
Query: 704 ggcctggccctcaacttctcc-gtgttctactatgagatccagaacgcaccggagcaggc 762
||||||||||| |||| |||| || ||||||||||||||||||||||| |||||||| ||
Sbjct: 10031230 ggcctggcccttaactactcccgttttctactatgagatccagaacgccccggagcaagc 10031289
Query: 763 ctgtctcttagccaaacaggcctttgatgacgccatagccgagctggacacactaaatga 822
||| | || ||||| || || ||||||||||| |||||||| ||||| || || ||
Sbjct: 10031290 ctgccactgggccaagaccgctttcgatgacgccatcgccgagcttgacaccctcaacga 10031349
Query: 823 ggattcctataaggactccacgctcatcatgcagctgctgcgagataacctcaccctctg 882
||| ||||| |||||||||||||||||||||||||| || || || |||||||| |||||
Sbjct: 10031350 ggactcctacaaggactccacgctcatcatgcagctcctccgcgacaacctcacgctctg 10031409
Query: 883 gaccagcgaccagcaggacgaagaagccggagaaggcaac 922
||| ||||| ||||| ||||| || | ||||||||||||
Sbjct: 10031410 gacaagcgatcagcaagacgacgacggtggagaaggcaac 10031449
Score = 79.8 bits (40), Expect = 5e-12
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 185 atgggggaccgcgaacagctgctgcagcgggcgcggctggccgagcaggcggagcgctac 244
|||| ||||||||| || ||| ||||| || |||||||| ||||||||||||||||||
Sbjct: 9882857 atggtggaccgcgagcaactggtgcagaaagcccggctggcggagcaggcggagcgctac 9882916
Query: 245 gacgacatggcctccgccatgaag 268
|||||||||||| | |||||||||
Sbjct: 9882917 gacgacatggccgcggccatgaag 9882940
Score = 77.8 bits (39), Expect = 2e-11
Identities = 138/171 (80%)
Strand = Plus / Minus
Query: 220 gctggccgagcaggcggagcgctacgacgacatggcctccgccatgaaggcggtgacaga 279
||||||||||||||| ||||||||||||||||||||| || ||||||||| ||||| ||
Sbjct: 135278591 gctggccgagcaggccgagcgctacgacgacatggccacctgcatgaaggccgtgacgga 135278532
Query: 280 gctcaatgaacctctctccaatgaggaccgaaacctcctctctgtggcctacaagaatgt 339
|| | || ||||| ||||| || ||||| ||||| |||||||||||||| ||
Sbjct: 135278531 gcagggcgccgagctgtccaacgaggagcgcaacctgctctcggtggcctacaagaacgt 135278472
Query: 340 ggtcggtgcccggcggtcttcctggagggtcatcagcagcattgagcagaa 390
|||||| | ||| |||| |||||||||||||| ||||| ||||||||
Sbjct: 135278471 ggtcgggggccgcaggtccgcctggagggtcatctcgagcatcgagcagaa 135278421
Score = 63.9 bits (32), Expect = 3e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 536 gagagcaaggtcttctacctgaagatgaagggcgattactaccgctacctggccgaggtg 595
||||| ||||||||||||||||| |||||||| ||||||| ||| ||||| || |||||
Sbjct: 135251367 gagagtaaggtcttctacctgaaaatgaagggagattacttccggtaccttgctgaggtt 135251308
Query: 596 gctt 599
||||
Sbjct: 135251307 gctt 135251304
Score = 61.9 bits (31), Expect = 1e-06
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 677 atgcagccgacacaccccatccggctgggcctggccctcaacttctccgtgttctactat 736
||||| || |||||||||||||| ||||| ||||| || |||||||| || || ||||||
Sbjct: 135247876 atgcaacccacacaccccatccgcctggggctggctcttaacttctctgtattttactat 135247817
Query: 737 gagatcc 743
|||||||
Sbjct: 135247816 gagatcc 135247810
>gb|GL894571.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3222
Length = 18960
Score = 99.6 bits (50), Expect = 5e-18
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 1631 catgtcaatcaagatgggtaattatgaaatgccagacttctaaattaaatgttttggaat 1690
||||||| |||| ||| || || || |||||||||||||||||||||||| |||||||||
Sbjct: 1805 catgtcagtcaaaatgtgtgatgataaaatgccagacttctaaattaaatattttggaat 1864
Query: 1691 tcagtgggtaaataaatgctgctttg 1716
||| ||||||||||||| ||||||||
Sbjct: 1865 tcaatgggtaaataaatactgctttg 1890
>Sscrofa_Chr17
|| Length = 69701581
Score = 81.8 bits (41), Expect = 1e-12
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 293 ctctccaatgaggaccgaaacctcctctctgtggcctacaagaatgtggtcggtgcccgg 352
|||||||| ||||| ||||||| ||||| || ||||||||||| || |||||||||||
Sbjct: 52808557 ctctccaacgaggagagaaacctgctctccgtcgcctacaagaacgtagtcggtgcccgc 52808616
Query: 353 cggtcttcctggagggtcatcagcagcattgagcagaaaac 393
|| ||||||||| | |||||| |||||| |||||||||||
Sbjct: 52808617 cgttcttcctggcgtgtcatctccagcatcgagcagaaaac 52808657
Score = 65.9 bits (33), Expect = 7e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 641 gcctacaaggaagcctttgaaattagcaaagagcacatgcagccgacacaccccatccgg 700
|||||| ||||||| ||||||||||| || | | |||||||| |||||||| || ||
Sbjct: 52812401 gcctaccaggaagcatttgaaattagtaagaaagaaatgcagcctacacacccaattcga 52812460
Query: 701 ctgggcctggccctcaacttctccgtgttctactatgagat 741
||||||||||| || || |||||||| || |||||||||||
Sbjct: 52812461 ctgggcctggcacttaatttctccgtcttttactatgagat 52812501
>Sscrofa_Chr06
|| Length = 157765593
Score = 75.8 bits (38), Expect = 7e-11
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 544 ggtcttctacctgaagatgaagggcgattactaccgctacctggccgaggtggc 597
||||||||||||||| |||||||| || |||||||| |||||||||||||||||
Sbjct: 77759112 ggtcttctacctgaaaatgaagggtgactactaccgttacctggccgaggtggc 77759165
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,186,544
Number of extensions: 406
Number of successful extensions: 406
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 32
Length of query: 1745
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1723
Effective length of database: 2,808,408,574
Effective search space: 4838887973002
Effective search space used: 4838887973002
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)