Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012206
(1271 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546936.2| PREDICTED: similar to 14-3-3 protein gamma [Can... 380 e-105
Alignment gi|XP_533072.2| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 352 3e-97
Alignment gi|XP_857778.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 352 3e-97
Alignment gi|XP_849044.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 352 3e-97
Alignment gi|XP_534429.2| PREDICTED: similar to 14-3-3 protein beta/alpha... 351 7e-97
Alignment gi|XP_852754.1| PREDICTED: similar to 14-3-3 protein beta/alpha... 351 7e-97
Alignment gi|XP_850323.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 345 4e-95
Alignment gi|XP_857819.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 345 7e-95
Alignment gi|XP_857856.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -... 338 5e-93
Alignment gi|XP_532871.1| PREDICTED: similar to 14-3-3 protein theta (14-... 336 2e-92
>ref|XP_546936.2| PREDICTED: similar to 14-3-3 protein gamma [Canis familiaris].
Length = 343
Score = 380 bits (977), Expect = e-105
Identities = 189/217 (87%), Positives = 203/217 (93%)
Frame = +1
Query: 415 VTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKLEKVKAYREKI 594
VTELNEPLSNE+RNLLSVAYKNVVGARRSSWRVISSIEQKT ADGNEKK+E V+AYREKI
Sbjct: 126 VTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKI 185
Query: 595 EKELETVCNDVLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEA 774
EKELE VC DVL+LLD +LIKNC++ QYESKVFYLKMKGDYYRYLAEVA+GEK+ +VVE+
Sbjct: 186 EKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVES 245
Query: 775 SEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELD 954
SE AY EA EISKEHMQPTHPIRLGLALN+SVFYYEIQNAPEQAC LAK AFDDAIAELD
Sbjct: 246 SEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELD 305
Query: 955 TLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKAGKGN 1065
TLNEDSYKDSTLIMQLLRDNLTLWTSDQQD+ G+GN
Sbjct: 306 TLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGN 342
>ref|XP_533072.2| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide isoform 1 [Canis
familiaris].
Length = 245
Score = 352 bits (904), Expect = 3e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|XP_857778.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide isoform 3 [Canis
familiaris].
Length = 245
Score = 352 bits (904), Expect = 3e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|XP_849044.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide isoform 2 [Canis
familiaris].
Length = 245
Score = 352 bits (904), Expect = 3e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|XP_534429.2| PREDICTED: similar to 14-3-3 protein beta/alpha (Protein kinase C
inhibitor protein-1) (KCIP-1) (Protein 1054) isoform 1
[Canis familiaris].
Length = 244
Score = 351 bits (901), Expect = 7e-97
Identities = 181/243 (74%), Positives = 207/243 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 62 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q ++
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 237
Query: 1054 GKG 1062
G
Sbjct: 238 DAG 240
>ref|XP_852754.1| PREDICTED: similar to 14-3-3 protein beta/alpha (Protein kinase C
inhibitor protein-1) (KCIP-1) (Protein 1054) isoform 2
[Canis familiaris].
Length = 244
Score = 351 bits (901), Expect = 7e-97
Identities = 181/243 (74%), Positives = 207/243 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 62 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q ++
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 237
Query: 1054 GKG 1062
G
Sbjct: 238 DAG 240
>ref|XP_850323.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide [Canis familiaris].
Length = 289
Score = 345 bits (886), Expect = 4e-95
Identities = 178/249 (71%), Positives = 209/249 (83%)
Frame = +1
Query: 325 DMGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSS 504
+ G + +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSS
Sbjct: 43 ETGHKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSS 102
Query: 505 WRVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYES 684
WRV+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ES
Sbjct: 103 WRVVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAES 158
Query: 685 KVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNF 864
KVF LKMKGDYYRYLAEVA+G+ K +V+ S+ A +EAFEISK+ MQPTHPIRLGLALNF
Sbjct: 159 KVFCLKMKGDYYRYLAEVAAGDDKKGIVDQSQQANQEAFEISKKEMQPTHPIRLGLALNF 218
Query: 865 SVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD 1044
SVFYYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q
Sbjct: 219 SVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQG 278
Query: 1045 EKAGKGN*G 1071
++A G G
Sbjct: 279 DEAEAGEGG 287
>ref|XP_857819.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide isoform 4 [Canis
familiaris].
Length = 254
Score = 345 bits (884), Expect = 7e-95
Identities = 180/255 (70%), Positives = 210/255 (82%), Gaps = 9/255 (3%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKN---------SVVEASEAAYKEAFEISKEHMQPTHPIRL 846
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRL
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKVCFGMFYFPGIVDQSQQAYQEAFEISKKEMQPTHPIRL 177
Query: 847 GLALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLW 1026
GLALNFSVFYYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLW
Sbjct: 178 GLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLW 237
Query: 1027 TSDQQDEKAGKGN*G 1071
TSD Q ++A G G
Sbjct: 238 TSDTQGDEAEAGEGG 252
>ref|XP_857856.1| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase
activation protein, zeta polypeptide isoform 5 [Canis
familiaris].
Length = 229
Score = 338 bits (868), Expect = 5e-93
Identities = 172/231 (74%), Positives = 200/231 (86%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLW 1026
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLT W
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTWW 228
>ref|XP_532871.1| PREDICTED: similar to 14-3-3 protein theta (14-3-3 protein tau)
(14-3-3 protein T-cell) (HS1 protein) isoform 1 [Canis
familiaris].
Length = 245
Score = 336 bits (862), Expect = 2e-92
Identities = 171/239 (71%), Positives = 200/239 (83%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYLAEVA G+ + ++ S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEK 1050
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E+
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE 236
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,265,634
Number of extensions: 869984
Number of successful extensions: 3600
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 3540
Number of HSP's successfully gapped: 25
Length of query: 423
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 318
Effective length of database: 15,374,224
Effective search space: 4889003232
Effective search space used: 4889003232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012206
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012206
(1271 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776917.2| 14-3-3 protein eta [Bos taurus]. 481 e-136
Alignment gi|NP_777218.2| 14-3-3 protein gamma [Bos taurus]. 426 e-119
Alignment gi|XP_002696287.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxyg... 354 1e-97
Alignment gi|XP_002702517.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxyg... 354 1e-97
Alignment gi|NP_777239.1| 14-3-3 protein zeta/delta [Bos taurus]. 352 3e-97
Alignment gi|NP_777219.2| 14-3-3 protein beta/alpha [Bos taurus]. 351 7e-97
Alignment gi|NP_001071595.1| 14-3-3 protein theta [Bos taurus]. 336 2e-92
Alignment gi|NP_001069380.1| 14-3-3 protein sigma [Bos taurus]. 306 3e-83
Alignment gi|NP_776916.1| 14-3-3 protein epsilon [Bos taurus]. 300 1e-81
Alignment gi|XP_002699268.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxyg... 294 1e-79
>ref|NP_776917.2| 14-3-3 protein eta [Bos taurus].
Length = 246
Score = 481 bits (1237), Expect = e-136
Identities = 243/246 (98%), Positives = 246/246 (100%)
Frame = +1
Query: 328 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 507
MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
Sbjct: 1 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 60
Query: 508 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 687
RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK
Sbjct: 61 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 120
Query: 688 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 867
VFYLKMKGDYYRYLAEVASG+KKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS
Sbjct: 121 VFYLKMKGDYYRYLAEVASGQKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 180
Query: 868 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 1047
VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
Sbjct: 181 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 240
Query: 1048 KAGKGN 1065
+AG+GN
Sbjct: 241 EAGEGN 246
>ref|NP_777218.2| 14-3-3 protein gamma [Bos taurus].
Length = 247
Score = 426 bits (1094), Expect = e-119
Identities = 213/246 (86%), Positives = 230/246 (93%)
Frame = +1
Query: 328 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 507
M DREQL+Q+ARLAEQAERYDDMA+AMK VTELNEPLSNE+RNLLSVAYKNVVGARRSSW
Sbjct: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW 60
Query: 508 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 687
RVISSIEQKT ADGNEKK+E V+AYREKIEKELE VC DVL+LLD +LIKNC++ QYESK
Sbjct: 61 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
Query: 688 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 867
VFYLKMKGDYYRYLAEVA+GEK+ +VVE+SE AY EA EISKEHMQPTHPIRLGLALN+S
Sbjct: 121 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
Query: 868 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 1047
VFYYEIQNAPEQAC LAK AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD+
Sbjct: 181 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
Query: 1048 KAGKGN 1065
G+GN
Sbjct: 241 DGGEGN 246
>ref|XP_002696287.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxygenase activation protein,
zeta polypeptide-like [Bos taurus].
Length = 245
Score = 354 bits (908), Expect = 1e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNEDRNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEDRNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|XP_002702517.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxygenase activation protein,
zeta polypeptide [Bos taurus].
Length = 245
Score = 354 bits (908), Expect = 1e-97
Identities = 181/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNEDRNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEDRNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|NP_777239.1| 14-3-3 protein zeta/delta [Bos taurus].
Length = 245
Score = 352 bits (904), Expect = 3e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|NP_777219.2| 14-3-3 protein beta/alpha [Bos taurus].
Length = 246
Score = 351 bits (901), Expect = 7e-97
Identities = 181/243 (74%), Positives = 207/243 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 4 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 63
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 64 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 119
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 120 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 179
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q ++
Sbjct: 180 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 239
Query: 1054 GKG 1062
G
Sbjct: 240 DAG 242
>ref|NP_001071595.1| 14-3-3 protein theta [Bos taurus].
Length = 245
Score = 336 bits (862), Expect = 2e-92
Identities = 171/239 (71%), Positives = 200/239 (83%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYLAEVA G+ + ++ S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEK 1050
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E+
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE 236
>ref|NP_001069380.1| 14-3-3 protein sigma [Bos taurus].
Length = 248
Score = 306 bits (783), Expect = 3e-83
Identities = 153/242 (63%), Positives = 196/242 (80%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
+R L+Q+A+LAEQAERY+DMA+ MK+ E E LS E+RNLLSVAYKNVVG +R++WRV
Sbjct: 2 ERASLIQKAKLAEQAERYEDMAAFMKSAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQK+ + +E+K +V+ YREK+E EL VC+ VL LLD LIK D ES+VF
Sbjct: 62 LSSIEQKSNEESSEEKGPEVQEYREKVETELRGVCDTVLGLLDTHLIKEAGDA--ESRVF 119
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +++++ +AY+EA +ISK+ M PT+PIRLGLALNFSVF
Sbjct: 120 YLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVF 179
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
+YEI N+PE+A LAK FD+A+A+L TL+EDSYKDSTLIMQLLRDNLTLWT+D E+
Sbjct: 180 HYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEG 239
Query: 1054 GK 1059
G+
Sbjct: 240 GE 241
>ref|NP_776916.1| 14-3-3 protein epsilon [Bos taurus].
Length = 255
Score = 300 bits (769), Expect = 1e-81
Identities = 153/240 (63%), Positives = 186/240 (77%)
Frame = +1
Query: 328 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 507
M DRE L+ +A+LAEQAERYD+M +MK V ++ L+ E+RNLLSVAYKNV+GARR+SW
Sbjct: 1 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASW 60
Query: 508 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 687
R+ISSIEQK G E KL+ ++ YR+ +E EL+ +C D+L +LDK LI N ESK
Sbjct: 61 RIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTG--ESK 118
Query: 688 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 867
VFY KMKGDY+RYLAE A+G + E S AYK A +I+ + PTHPIRLGLALNFS
Sbjct: 119 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS 178
Query: 868 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 1047
VFYYEI N+P++AC LAK AFDDAIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q +
Sbjct: 179 VFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD 238
>ref|XP_002699268.1| PREDICTED: tyrosine 3/tryptophan 5 -monooxygenase activation protein,
theta polypeptide-like [Bos taurus].
Length = 243
Score = 294 bits (752), Expect = 1e-79
Identities = 153/239 (64%), Positives = 184/239 (76%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
++ +L+Q+ +LAEQAE YDDMA+ MKA+TE SNE+RNLLSVAYK VVG RRS+WRV
Sbjct: 2 EKTELIQKVKLAEQAEHYDDMATCMKAMTEQGAEPSNEERNLLSVAYK-VVGGRRSAWRV 60
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISS EQKT D ++KKL+ +K Y EK+E +L ++C VL LLDK+L N + VF
Sbjct: 61 ISSFEQKT--DTSDKKLQLIKDYWEKVESKLRSICTTVLELLDKYLTANATN---PESVF 115
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYLAEVA + + ++ S+ AY+EAF ISK+ MQPTHPI LGLALNFSV
Sbjct: 116 YLKMKGDYFRYLAEVACDDDQKQTIDNSQGAYQEAFHISKKEMQPTHPIGLGLALNFSVL 175
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEK 1050
YYEI N PE AC LAK AFD+A+AELDTLNEDS KDSTLIMQLLRDNL LWTSD E+
Sbjct: 176 YYEILNNPELACTLAKTAFDEALAELDTLNEDSCKDSTLIMQLLRDNLALWTSDSAGEE 234
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,612,646
Number of extensions: 828534
Number of successful extensions: 3515
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3480
Number of HSP's successfully gapped: 13
Length of query: 423
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,207,134
Effective search space: 4517868612
Effective search space used: 4517868612
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012206
(1271 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928111.1| PREDICTED: 14-3-3 protein eta [Sus scrofa]. 482 e-136
Alignment gi|XP_003124444.2| PREDICTED: 14-3-3 protein gamma-like [Sus sc... 380 e-106
Alignment gi|XP_001927289.1| PREDICTED: 14-3-3 protein beta/alpha isoform... 351 4e-97
Alignment gi|XP_003125436.1| PREDICTED: 14-3-3 protein theta isoform 1 [S... 342 3e-94
Alignment gi|XP_003125437.2| PREDICTED: 14-3-3 protein theta isoform 2 [S... 336 1e-92
Alignment gi|NP_001038029.1| 14-3-3 protein sigma [Sus scrofa]. 305 3e-83
Alignment gi|XP_001927263.2| PREDICTED: 14-3-3 protein zeta/delta [Sus sc... 219 2e-57
Alignment gi|XP_003361720.1| PREDICTED: 14-3-3 protein epsilon-like [Sus ... 196 3e-50
Alignment gi|XP_003354973.1| PREDICTED: 14-3-3 protein theta-like [Sus sc... 184 1e-46
Alignment gi|XP_003354980.1| PREDICTED: 14-3-3 protein theta-like [Sus sc... 134 1e-31
>ref|XP_001928111.1| PREDICTED: 14-3-3 protein eta [Sus scrofa].
Length = 246
Score = 482 bits (1240), Expect = e-136
Identities = 244/246 (99%), Positives = 246/246 (100%)
Frame = +1
Query: 328 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 507
MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
Sbjct: 1 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 60
Query: 508 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 687
RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK
Sbjct: 61 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 120
Query: 688 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 867
VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS
Sbjct: 121 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 180
Query: 868 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 1047
VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
Sbjct: 181 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 240
Query: 1048 KAGKGN 1065
+AG+GN
Sbjct: 241 EAGEGN 246
>ref|XP_003124444.2| PREDICTED: 14-3-3 protein gamma-like [Sus scrofa].
Length = 241
Score = 380 bits (977), Expect = e-106
Identities = 189/217 (87%), Positives = 203/217 (93%)
Frame = +1
Query: 415 VTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKLEKVKAYREKI 594
VTELNEPLSNE+RNLLSVAYKNVVGARRSSWRVISSIEQKT ADGNEKK+E V+AYREKI
Sbjct: 24 VTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKI 83
Query: 595 EKELETVCNDVLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEA 774
EKELE VC DVL+LLD +LIKNC++ QYESKVFYLKMKGDYYRYLAEVA+GEK+ +VVE+
Sbjct: 84 EKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVES 143
Query: 775 SEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELD 954
SE AY EA EISKEHMQPTHPIRLGLALN+SVFYYEIQNAPEQAC LAK AFDDAIAELD
Sbjct: 144 SEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELD 203
Query: 955 TLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKAGKGN 1065
TLNEDSYKDSTLIMQLLRDNLTLWTSDQQD+ G+GN
Sbjct: 204 TLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGN 240
>ref|XP_001927289.1| PREDICTED: 14-3-3 protein beta/alpha isoform 1 [Sus scrofa].
Length = 246
Score = 351 bits (901), Expect = 4e-97
Identities = 181/243 (74%), Positives = 207/243 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 4 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 63
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 64 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 119
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 120 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 179
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q ++
Sbjct: 180 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 239
Query: 1054 GKG 1062
G
Sbjct: 240 DTG 242
>ref|XP_003125436.1| PREDICTED: 14-3-3 protein theta isoform 1 [Sus scrofa].
Length = 246
Score = 342 bits (877), Expect = 3e-94
Identities = 174/241 (72%), Positives = 202/241 (83%)
Frame = +1
Query: 328 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 507
MGD+ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+W
Sbjct: 1 MGDKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAW 60
Query: 508 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 687
RVISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESK
Sbjct: 61 RVISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESK 116
Query: 688 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 867
VFYLKMKGDY+RYLAEVA G+ + ++ S+ AY+EAF+ISK+ MQPTHPIRLGLALNFS
Sbjct: 117 VFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFS 176
Query: 868 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 1047
VFYYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E
Sbjct: 177 VFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGE 236
Query: 1048 K 1050
+
Sbjct: 237 E 237
>ref|XP_003125437.2| PREDICTED: 14-3-3 protein theta isoform 2 [Sus scrofa].
Length = 245
Score = 336 bits (862), Expect = 1e-92
Identities = 171/239 (71%), Positives = 200/239 (83%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYLAEVA G+ + ++ S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEK 1050
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E+
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE 236
>ref|NP_001038029.1| 14-3-3 protein sigma [Sus scrofa].
Length = 248
Score = 305 bits (782), Expect = 3e-83
Identities = 152/242 (62%), Positives = 197/242 (81%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
+R ++Q+A+LAEQAERY+DMA+ MK+ E E LS E+RNLLSVAYKNVVG +R++WRV
Sbjct: 2 ERASVIQKAKLAEQAERYEDMAAFMKSAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQK+ +G+E+K +V+ YREK+EKEL VC+ VL LL+ LIK D ES+VF
Sbjct: 62 LSSIEQKSNEEGSEEKGPEVREYREKVEKELRGVCDTVLGLLNTHLIKEAGDA--ESRVF 119
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +++++ +AY+EA +ISK+ M PT+PIRLGLALNF VF
Sbjct: 120 YLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFYVF 179
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
+YEI N+PE+A LAK FD+A+A+L TL+EDSYKDSTLIMQLLRDNLTLWT+D E+
Sbjct: 180 HYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEG 239
Query: 1054 GK 1059
G+
Sbjct: 240 GE 241
>ref|XP_001927263.2| PREDICTED: 14-3-3 protein zeta/delta [Sus scrofa].
Length = 286
Score = 219 bits (559), Expect = 2e-57
Identities = 111/150 (74%), Positives = 128/150 (85%)
Frame = +1
Query: 622 DVLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAF 801
D +LL+KFLI N + Q ESKVFYLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAF
Sbjct: 137 DAKSLLEKFLIPNAS--QAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAF 194
Query: 802 EISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKD 981
EISK+ MQPTHPIRLGLALNFSVFYYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKD
Sbjct: 195 EISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKD 254
Query: 982 STLIMQLLRDNLTLWTSDQQDEKAGKGN*G 1071
STLIMQLLRDNLTLWTSD Q ++A G G
Sbjct: 255 STLIMQLLRDNLTLWTSDTQGDEAEAGEGG 284
>ref|XP_003361720.1| PREDICTED: 14-3-3 protein epsilon-like [Sus scrofa].
Length = 232
Score = 196 bits (497), Expect = 3e-50
Identities = 100/183 (54%), Positives = 128/183 (69%)
Frame = +1
Query: 394 MASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKLEKV 573
M +MK V ++ L+ E+RNLLSVAYKNV+GARR+SWR+ISSIEQK G E KL+ +
Sbjct: 1 MVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 60
Query: 574 KAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEK 753
+ YR+ +E EL+ +C D+L +LDK LI N ESKVFY KMKGDY+RYLAE A+G
Sbjct: 61 REYRQMVETELKLICCDILDVLDKHLIPAANTG--ESKVFYYKMKGDYHRYLAEFATGND 118
Query: 754 KNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFD 933
+ E S AYK A +I+ + PTHPIRLGLALNFSVFYYEI N+P++AC K
Sbjct: 119 RKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACREEKNGMR 178
Query: 934 DAI 942
+ +
Sbjct: 179 ELV 181
>ref|XP_003354973.1| PREDICTED: 14-3-3 protein theta-like [Sus scrofa].
Length = 125
Score = 184 bits (466), Expect = 1e-46
Identities = 89/116 (76%), Positives = 100/116 (86%)
Frame = +1
Query: 703 MKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYE 882
MKGDY+RYLAEVA G+ + ++ S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVFYYE
Sbjct: 1 MKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYE 60
Query: 883 IQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEK 1050
I N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E+
Sbjct: 61 ILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE 116
>ref|XP_003354980.1| PREDICTED: 14-3-3 protein theta-like [Sus scrofa].
Length = 152
Score = 134 bits (337), Expect = 1e-31
Identities = 67/99 (67%), Positives = 83/99 (83%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVL 630
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVL 98
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,636,346
Number of extensions: 537594
Number of successful extensions: 2310
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2296
Number of HSP's successfully gapped: 10
Length of query: 423
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 321
Effective length of database: 8,804,438
Effective search space: 2826224598
Effective search space used: 2826224598
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012206
(1271 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035868.1| 14-3-3 protein eta [Mus musculus]. 482 e-136
Alignment gi|NP_061359.2| 14-3-3 protein gamma [Mus musculus]. 426 e-119
Alignment gi|NP_061223.2| 14-3-3 protein beta/alpha [Mus musculus]. 352 3e-97
Alignment gi|NP_035870.1| 14-3-3 protein zeta/delta [Mus musculus]. 352 4e-97
Alignment gi|XP_001473550.2| PREDICTED: 14-3-3 protein theta-like [Mus mu... 337 9e-93
Alignment gi|XP_003085851.1| PREDICTED: 14-3-3 protein theta-like [Mus mu... 337 9e-93
Alignment gi|XP_003085853.1| PREDICTED: 14-3-3 protein theta-like [Mus mu... 337 9e-93
Alignment gi|XP_003085854.1| PREDICTED: 14-3-3 protein theta-like [Mus mu... 337 9e-93
Alignment gi|XP_003085852.1| PREDICTED: 14-3-3 protein theta-like [Mus mu... 337 9e-93
Alignment gi|XP_003085850.1| PREDICTED: 14-3-3 protein theta-like [Mus mu... 337 9e-93
>ref|NP_035868.1| 14-3-3 protein eta [Mus musculus].
Length = 246
Score = 482 bits (1240), Expect = e-136
Identities = 244/246 (99%), Positives = 246/246 (100%)
Frame = +1
Query: 328 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 507
MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
Sbjct: 1 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 60
Query: 508 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 687
RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK
Sbjct: 61 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 120
Query: 688 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 867
VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS
Sbjct: 121 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 180
Query: 868 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 1047
VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
Sbjct: 181 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 240
Query: 1048 KAGKGN 1065
+AG+GN
Sbjct: 241 EAGEGN 246
>ref|NP_061359.2| 14-3-3 protein gamma [Mus musculus].
Length = 247
Score = 426 bits (1094), Expect = e-119
Identities = 213/246 (86%), Positives = 230/246 (93%)
Frame = +1
Query: 328 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 507
M DREQL+Q+ARLAEQAERYDDMA+AMK VTELNEPLSNE+RNLLSVAYKNVVGARRSSW
Sbjct: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW 60
Query: 508 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 687
RVISSIEQKT ADGNEKK+E V+AYREKIEKELE VC DVL+LLD +LIKNC++ QYESK
Sbjct: 61 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
Query: 688 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 867
VFYLKMKGDYYRYLAEVA+GEK+ +VVE+SE AY EA EISKEHMQPTHPIRLGLALN+S
Sbjct: 121 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
Query: 868 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 1047
VFYYEIQNAPEQAC LAK AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD+
Sbjct: 181 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
Query: 1048 KAGKGN 1065
G+GN
Sbjct: 241 DGGEGN 246
>ref|NP_061223.2| 14-3-3 protein beta/alpha [Mus musculus].
Length = 246
Score = 352 bits (904), Expect = 3e-97
Identities = 182/243 (74%), Positives = 207/243 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 4 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 63
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 64 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLILNAT--QAESKVF 119
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYL+EVASGE K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 120 YLKMKGDYFRYLSEVASGENKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 179
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q ++
Sbjct: 180 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 239
Query: 1054 GKG 1062
G
Sbjct: 240 DAG 242
>ref|NP_035870.1| 14-3-3 protein zeta/delta [Mus musculus].
Length = 245
Score = 352 bits (903), Expect = 4e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QPESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|XP_001473550.2| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 319
Score = 337 bits (865), Expect = 9e-93
Identities = 175/247 (70%), Positives = 203/247 (82%)
Frame = +1
Query: 310 RPSHSDMGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVG 489
R S S ++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG
Sbjct: 68 RRSPSLAMEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVG 127
Query: 490 ARRSSWRVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCND 669
RRS+WRVISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N +
Sbjct: 128 GRRSAWRVISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN 185
Query: 670 FQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLG 849
ESKVFYLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLG
Sbjct: 186 --PESKVFYLKMKGDYFRYLAEVACGDDQKQTIENSQGAYQEAFDISKKEMQPTHPIRLG 243
Query: 850 LALNFSVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWT 1029
LALNFSVFYYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWT
Sbjct: 244 LALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWT 303
Query: 1030 SDQQDEK 1050
SD E+
Sbjct: 304 SDSAGEE 310
>ref|XP_003085851.1| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 245
Score = 337 bits (865), Expect = 9e-93
Identities = 172/239 (71%), Positives = 200/239 (83%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEK 1050
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E+
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE 236
>ref|XP_003085853.1| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 245
Score = 337 bits (865), Expect = 9e-93
Identities = 172/239 (71%), Positives = 200/239 (83%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEK 1050
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E+
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE 236
>ref|XP_003085854.1| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 245
Score = 337 bits (865), Expect = 9e-93
Identities = 172/239 (71%), Positives = 200/239 (83%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEK 1050
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E+
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE 236
>ref|XP_003085852.1| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 245
Score = 337 bits (865), Expect = 9e-93
Identities = 172/239 (71%), Positives = 200/239 (83%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEK 1050
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E+
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE 236
>ref|XP_003085850.1| PREDICTED: 14-3-3 protein theta-like [Mus musculus].
Length = 245
Score = 337 bits (865), Expect = 9e-93
Identities = 172/239 (71%), Positives = 200/239 (83%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
++ +L+Q+A+LAEQAERYDDMA+ MKAVTE LSNE+RNLLSVAYKNVVG RRS+WRV
Sbjct: 2 EKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT D ++KKL+ +K YREK+E EL ++C VL LLDK+LI N + ESKVF
Sbjct: 62 ISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYLAEVA G+ + +E S+ AY+EAF+ISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYFRYLAEVACGDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEK 1050
YYEI N PE AC LAK AFD+AIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD E+
Sbjct: 178 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEE 236
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,556,222
Number of extensions: 698229
Number of successful extensions: 2819
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2785
Number of HSP's successfully gapped: 14
Length of query: 423
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 319
Effective length of database: 12,493,815
Effective search space: 3985526985
Effective search space used: 3985526985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012206
(1271 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003396.1| 14-3-3 protein eta [Homo sapiens]. 478 e-135
Alignment gi|NP_036611.2| 14-3-3 protein gamma [Homo sapiens]. 426 e-119
Alignment gi|NP_001129174.1| 14-3-3 protein zeta/delta [Homo sapiens]. 352 3e-97
Alignment gi|NP_001129173.1| 14-3-3 protein zeta/delta [Homo sapiens]. 352 3e-97
Alignment gi|NP_001129172.1| 14-3-3 protein zeta/delta [Homo sapiens]. 352 3e-97
Alignment gi|NP_001129171.1| 14-3-3 protein zeta/delta [Homo sapiens]. 352 3e-97
Alignment gi|NP_663723.1| 14-3-3 protein zeta/delta [Homo sapiens]. 352 3e-97
Alignment gi|NP_003397.1| 14-3-3 protein zeta/delta [Homo sapiens]. 352 3e-97
Alignment gi|NP_003395.1| 14-3-3 protein beta/alpha [Homo sapiens]. 351 7e-97
Alignment gi|NP_647539.1| 14-3-3 protein beta/alpha [Homo sapiens]. 351 7e-97
>ref|NP_003396.1| 14-3-3 protein eta [Homo sapiens].
Length = 246
Score = 478 bits (1229), Expect = e-135
Identities = 242/246 (98%), Positives = 245/246 (99%)
Frame = +1
Query: 328 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 507
MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
Sbjct: 1 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 60
Query: 508 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 687
RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVL+LLDKFLIKNCNDFQYESK
Sbjct: 61 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK 120
Query: 688 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 867
VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKE MQPTHPIRLGLALNFS
Sbjct: 121 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS 180
Query: 868 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 1047
VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
Sbjct: 181 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 240
Query: 1048 KAGKGN 1065
+AG+GN
Sbjct: 241 EAGEGN 246
>ref|NP_036611.2| 14-3-3 protein gamma [Homo sapiens].
Length = 247
Score = 426 bits (1094), Expect = e-119
Identities = 213/246 (86%), Positives = 230/246 (93%)
Frame = +1
Query: 328 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW 507
M DREQL+Q+ARLAEQAERYDDMA+AMK VTELNEPLSNE+RNLLSVAYKNVVGARRSSW
Sbjct: 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW 60
Query: 508 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESK 687
RVISSIEQKT ADGNEKK+E V+AYREKIEKELE VC DVL+LLD +LIKNC++ QYESK
Sbjct: 61 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK 120
Query: 688 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFS 867
VFYLKMKGDYYRYLAEVA+GEK+ +VVE+SE AY EA EISKEHMQPTHPIRLGLALN+S
Sbjct: 121 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS 180
Query: 868 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 1047
VFYYEIQNAPEQAC LAK AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD+
Sbjct: 181 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD 240
Query: 1048 KAGKGN 1065
G+GN
Sbjct: 241 DGGEGN 246
>ref|NP_001129174.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 352 bits (904), Expect = 3e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|NP_001129173.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 352 bits (904), Expect = 3e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|NP_001129172.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 352 bits (904), Expect = 3e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|NP_001129171.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 352 bits (904), Expect = 3e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|NP_663723.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 352 bits (904), Expect = 3e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|NP_003397.1| 14-3-3 protein zeta/delta [Homo sapiens].
Length = 245
Score = 352 bits (904), Expect = 3e-97
Identities = 180/246 (73%), Positives = 210/246 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+ MK+VTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 2 DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRV 61
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
+SSIEQKT +G EKK + + YREKIE EL +CNDVL+LL+KFLI N + Q ESKVF
Sbjct: 62 VSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESKVF 117
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDYYRYLAEVA+G+ K +V+ S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 118 YLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 177
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD Q ++A
Sbjct: 178 YYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA 237
Query: 1054 GKGN*G 1071
G G
Sbjct: 238 EAGEGG 243
>ref|NP_003395.1| 14-3-3 protein beta/alpha [Homo sapiens].
Length = 246
Score = 351 bits (901), Expect = 7e-97
Identities = 181/243 (74%), Positives = 207/243 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 4 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 63
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 64 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 119
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 120 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 179
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q ++
Sbjct: 180 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 239
Query: 1054 GKG 1062
G
Sbjct: 240 DAG 242
>ref|NP_647539.1| 14-3-3 protein beta/alpha [Homo sapiens].
Length = 246
Score = 351 bits (901), Expect = 7e-97
Identities = 181/243 (74%), Positives = 207/243 (85%)
Frame = +1
Query: 334 DREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRV 513
D+ +L+Q+A+LAEQAERYDDMA+AMKAVTE LSNE+RNLLSVAYKNVVGARRSSWRV
Sbjct: 4 DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRV 63
Query: 514 ISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDKFLIKNCNDFQYESKVF 693
ISSIEQKT + NEKK + K YREKIE EL+ +CNDVL LLDK+LI N Q ESKVF
Sbjct: 64 ISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPESKVF 119
Query: 694 YLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVF 873
YLKMKGDY+RYL+EVASG+ K + V S+ AY+EAFEISK+ MQPTHPIRLGLALNFSVF
Sbjct: 120 YLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF 179
Query: 874 YYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEKA 1053
YYEI N+PE+AC LAK AFD+AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTS+ Q ++
Sbjct: 180 YYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEG 239
Query: 1054 GKG 1062
G
Sbjct: 240 DAG 242
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,373,103
Number of extensions: 839992
Number of successful extensions: 3512
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3428
Number of HSP's successfully gapped: 13
Length of query: 423
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,835,944
Effective search space: 4717830192
Effective search space used: 4717830192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012206
(1271 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1578 0.0
Sscrofa_Chr03 248 6e-63
Sscrofa_Chr17 82 9e-13
Sscrofa_Chr06 76 5e-11
>Sscrofa_Chr14
|| Length = 153851969
Score = 1578 bits (796), Expect = 0.0
Identities = 847/860 (98%), Gaps = 3/860 (0%)
Strand = Plus / Plus
Query: 414 ggtgacagagctcaatgaacctctctccaatgaggaccgaaacctcctctctgtggccta 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872327 ggtgacagagctcaatgaacctctctccaatgaggaccgaaacctcctctctgtggccta 51872386
Query: 474 caagaatgtggtcggtgcccggcggtcttcctggagggtcatcagcagcattgagcagaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872387 caagaatgtggtcggtgcccggcggtcttcctggagggtcatcagcagcattgagcagaa 51872446
Query: 534 aaccatggccgacgggaacgagaagaagttggagaaggttaaggcttaccgggagaagat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872447 aaccatggccgacgggaacgagaagaagttggagaaggttaaggcttaccgggagaagat 51872506
Query: 594 agagaaggagctggagacggtgtgcaatgatgtgctggctttgctagacaagttcctcat 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872507 agagaaggagctggagacggtgtgcaatgatgtgctggctttgctagacaagttcctcat 51872566
Query: 654 caagaactgcaatgatttccagtacgagagcaaggtcttctacctgaagatgaagggcga 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872567 caagaactgcaatgatttccagtacgagagcaaggtcttctacctgaagatgaagggcga 51872626
Query: 714 ttactaccgctacctggccgaggtggcttctggggagaagaaaaacagcgtggttgaagc 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872627 ttactaccgctacctggccgaggtggcttctggggagaagaaaaacagcgtggttgaagc 51872686
Query: 774 ttcagaggctgcctacaaggaagcctttgaaattagcaaagagcacatgcagccgacaca 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872687 ttcagaggctgcctacaaggaagcctttgaaattagcaaagagcacatgcagccgacaca 51872746
Query: 834 ccccatccggctgggcctggccctcaacttctccgtgttctactatgagatccagaacgc 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872747 ccccatccggctgggcctggccctcaacttctccgtgttctactatgagatccagaacgc 51872806
Query: 894 accggagcaggcctgtctcttagccaaacaggcctttgatgacgccatagccgagctgga 953
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 51872807 accggagcaggcctgtctcttagccaaacaggcctttgacgacgccatagccgagctgga 51872866
Query: 954 cacactaaatgaggattcctataaggactccacgctcatcatgcagctgctgcgagataa 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51872867 cacactaaatgaggattcctataaggactccacgctcatcatgcagctgctgcgagataa 51872926
Query: 1014 cctcaccctctggaccagcgaccagcaggacgaaaaagccggaaaaggcaactgaggctc 1073
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 51872927 cctcaccctctggaccagcgaccagcaggacgaagaagccggagaaggcaactgaggctc 51872986
Query: 1074 cctgaactgccccgcccccgccccatcaccacgggtccttcctcgccacagtcactcagt 1133
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 51872987 cctgacctgccccgcccccgccccatcaccaccggtccttcctcgccacagtcactcagt 51873046
Query: 1134 atccagtgctaaacctatgtgtatgacagcacagctactcagatctgctctccgcccct- 1192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51873047 atccagtgctaaacctatgtgtatgacagcacagctactcagatctgctctccgcccctg 51873106
Query: 1193 ggaagcagttccagataaa-ttatgggcatttgctggactgatgattgctttgaaacccc 1251
||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |
Sbjct: 51873107 ggaagcagttccagataaatttatgggca-ttgctggactgatgattgctttgagaccac 51873165
Query: 1252 gggaccccccttttcaaatt 1271
|||| | |||||||| ||||
Sbjct: 51873166 gggagctcccttttcgaatt 51873185
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 280 tagcaagcgagtggagctgggcgcgaggcgaggccgagccatagcgacatgggggaccgc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51861581 tagcaagcgagtggagctgggcgcgaggcgaggccgagccatagcgacatgggggaccgc 51861640
Query: 340 gaacagctgctgcagcgggcgcggctggccgagcaggcggagcgctacgacgacatggcc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51861641 gaacagctgctgcagcgggcgcggctggccgagcaggcggagcgctacgacgacatggcc 51861700
Query: 400 tccgccatgaaggcggtga 418
|||||||||||||||||||
Sbjct: 51861701 tccgccatgaaggcggtga 51861719
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 73 actgcgcaggcgtcctcccatccgcccatccccccgcgtgaccgcctgtcctctctcggc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51861374 actgcgcaggcgtcctcccatccgcccatccccccgcgtgaccgcctgtcctctctcggc 51861433
Query: 133 ggcgtccgcggtgcgagccacagcgcgcgaggcgagccagcgagaggtcgatcggtgctg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51861434 ggcgtccgcggtgcgagccacagcgcgcgaggcgagccagcgagaggtcgatcggtgctg 51861493
Query: 193 cctgctgcttgtagccta 210
||||||||||||||||||
Sbjct: 51861494 cctgctgcttgtagccta 51861511
Score = 153 bits (77), Expect = 3e-34
Identities = 247/301 (82%), Gaps = 2/301 (0%)
Strand = Plus / Minus
Query: 516 cagcagcattgagcagaaaaccatggccga-cgggaacgagaagaagttggagaaggtta 574
||||||||| ||||||||||||| ||| | ||| || ||||||| |||| |||||
Sbjct: 100163010 cagcagcatggagcagaaaaccacggctaaacggaaatgagaagagactggatgaggttc 100162951
Query: 575 aggcttaccgggagaagatagagaaggagctggagacggtgtgcaatgatgtgctggctt 634
||||||||||||||| ||| | || ||||||||| | ||||||||| || |||||| |
Sbjct: 100162950 aggcttaccgggagaggatggcgagggagctggaaatggtgtgcaacgacgtgctgagtc 100162891
Query: 635 tgctagacaagttcctcatcaagaactgcaatgatttccagtacgagagcaaggtcttct 694
||| |||||||||||||| ||||| |||| |||||||||| | |||||||||| |||||
Sbjct: 100162890 tgccagacaagttcctcacgaagaattgcagtgatttccagaatgagagcaaggacttct 100162831
Query: 695 acctgaagatgaagggcgattactaccgctacctggccgaggtggcttctggggagaaga 754
||||||| ||||| ||| | ||||||||||||||||| |||| |||| | | ||||||
Sbjct: 100162830 acctgaaaatgaa-ggcaactactaccgctacctggcagaggcggctccctgagagaagc 100162772
Query: 755 aaaacagcgtggttgaagcttcagaggctgcctacaaggaagcctttgaaattagcaaag 814
|||||| | ||| ||||| | | |||||||||||||||||||| ||||| |||||||
Sbjct: 100162771 caaacagtgcggtcgaagcatggggcgctgcctacaaggaagccttcgaaatcagcaaag 100162712
Query: 815 a 815
|
Sbjct: 100162711 a 100162711
Score = 105 bits (53), Expect = 6e-20
Identities = 59/61 (96%)
Strand = Plus / Minus
Query: 976 aaggactccacgctcatcatgcagctgctgcgagataacctcaccctctggaccagcgac 1035
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 41249349 aaggactccacgctcatcatgcagctgctgcgagacaacctcaccctctgggccagcgac 41249290
Query: 1036 c 1036
|
Sbjct: 41249289 c 41249289
Score = 103 bits (52), Expect = 2e-19
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 434 ctctctccaatgaggaccgaaacctcctctctgtggcctacaagaatgtggtcggtgccc 493
|||||||||| | |||||||| |||||||| | |||||| ||||| |||||||||||||
Sbjct: 41249846 ctctctccaacaaagaccgaaatctcctctccgaggcctaaaagaacgtggtcggtgccc 41249787
Query: 494 ggcggtcttcctggagggtcatcagcagcattgagc 529
|||||||||||||||||||| ||||||| ||||||
Sbjct: 41249786 ggcggtcttcctggagggtccgcagcagccttgagc 41249751
Score = 67.9 bits (34), Expect = 1e-08
Identities = 115/141 (81%), Gaps = 7/141 (4%)
Strand = Plus / Minus
Query: 344 agctgctgcagcgggcgcggctggcc-----gagcaggcggagcgctacgacgacatggc 398
|||||||||||| ||||||||||||| ||| ||| ||| | || |||||| ||||
Sbjct: 100163162 agctgctgcagcaggcgcggctggcctagacgagatggcagagtgttaggacgacgtggc 100163103
Query: 399 ctccgccatgaaggcggtgacagagctcaatgaacctctctccaatgaggaccgaaacct 458
||||| ||||||||||||||| | ||||| |||||||| |||| | |||||||||||
Sbjct: 100163102 ctccgtcatgaaggcggtgaccaatctcaacaaacctctc--caataaagaccgaaacct 100163045
Query: 459 cctctctgtggcctacaagaa 479
|| || ||||||||||||||
Sbjct: 100163044 ccccttcgtggcctacaagaa 100163024
>Sscrofa_Chr03
|| Length = 144787322
Score = 248 bits (125), Expect = 6e-63
Identities = 506/633 (79%)
Strand = Plus / Plus
Query: 414 ggtgacagagctcaatgaacctctctccaatgaggaccgaaacctcctctctgtggccta 473
|||||||||||| ||||| || || |||||||| || ||||||| ||||||||||| ||
Sbjct: 9907724 ggtgacagagctgaatgagccactgtccaatgaagaaagaaaccttctctctgtggctta 9907783
Query: 474 caagaatgtggtcggtgcccggcggtcttcctggagggtcatcagcagcattgagcagaa 533
||||||||| ||||| || || || ||||||||||||||||| || ||||||||||||||
Sbjct: 9907784 caagaatgtagtcggggcgcgccgttcttcctggagggtcattagtagcattgagcagaa 9907843
Query: 534 aaccatggccgacgggaacgagaagaagttggagaaggttaaggcttaccgggagaagat 593
||| || || || || ||||||||| | |||| ||| |||||||| || || ||
Sbjct: 9907844 gacctctgcagatggcaatgagaagaagatagagatggtccgtgcttaccgtgaaaaaat 9907903
Query: 594 agagaaggagctggagacggtgtgcaatgatgtgctggctttgctagacaagttcctcat 653
|||||||||| ||||| | || || | ||||||||| |||| || || | ||| ||
Sbjct: 9907904 agagaaggagttggaggccgtatgtcaggatgtgctgagcctgctggataactacctgat 9907963
Query: 654 caagaactgcaatgatttccagtacgagagcaaggtcttctacctgaagatgaagggcga 713
|||||| |||| || |||||| |||||||| || ||||||||||||||||| || ||
Sbjct: 9907964 caagaattgcagcgagacccagtatgagagcaaagtgttctacctgaagatgaaagggga 9908023
Query: 714 ttactaccgctacctggccgaggtggcttctggggagaagaaaaacagcgtggttgaagc 773
|| ||||||||||||||||| || || |||| ||||||| | ||| || || |
Sbjct: 9908024 ctattaccgctacctggccgaagtagccactggagagaagagggcgaccgtcgtggagtc 9908083
Query: 774 ttcagaggctgcctacaaggaagcctttgaaattagcaaagagcacatgcagccgacaca 833
|| ||| ||||| | |||||| ||| || ||||| |||||||||||||| || ||
Sbjct: 9908084 gtctgagaaggcctatagcgaagcccatgagatcagcaaggagcacatgcagcccactca 9908143
Query: 834 ccccatccggctgggcctggccctcaacttctccgtgttctactatgagatccagaacgc 893
|||||| | | ||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct: 9908144 ccccattagattaggcctggcccttaactactccgttttctactatgagatccagaacgc 9908203
Query: 894 accggagcaggcctgtctcttagccaaacaggcctttgatgacgccatagccgagctgga 953
|||||||| ||||| | ||| ||||| || || ||||||||||| |||||||| ||
Sbjct: 9908204 cccggagcaagcctgccacttggccaagaccgctttcgatgacgccatcgccgagcttga 9908263
Query: 954 cacactaaatgaggattcctataaggactccacgctcatcatgcagctgctgcgagataa 1013
||| || || ||||| ||||| |||||||||||||||||||||||||| || || || ||
Sbjct: 9908264 caccctcaacgaggactcctacaaggactccacgctcatcatgcagctcctccgcgacaa 9908323
Query: 1014 cctcaccctctggaccagcgaccagcaggacga 1046
|||||| |||||||| ||||| ||||| |||||
Sbjct: 9908324 cctcacgctctggacaagcgatcagcaagacga 9908356
Score = 145 bits (73), Expect = 7e-32
Identities = 170/201 (84%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 847 ggcctggccctcaacttctcc-gtgttctactatgagatccagaacgcaccggagcaggc 905
||||||||||| |||| |||| || ||||||||||||||||||||||| |||||||| ||
Sbjct: 10031230 ggcctggcccttaactactcccgttttctactatgagatccagaacgccccggagcaagc 10031289
Query: 906 ctgtctcttagccaaacaggcctttgatgacgccatagccgagctggacacactaaatga 965
||| | || ||||| || || ||||||||||| |||||||| ||||| || || ||
Sbjct: 10031290 ctgccactgggccaagaccgctttcgatgacgccatcgccgagcttgacaccctcaacga 10031349
Query: 966 ggattcctataaggactccacgctcatcatgcagctgctgcgagataacctcaccctctg 1025
||| ||||| |||||||||||||||||||||||||| || || || |||||||| |||||
Sbjct: 10031350 ggactcctacaaggactccacgctcatcatgcagctcctccgcgacaacctcacgctctg 10031409
Query: 1026 gaccagcgaccagcaggacga 1046
||| ||||| ||||| |||||
Sbjct: 10031410 gacaagcgatcagcaagacga 10031430
Score = 79.8 bits (40), Expect = 3e-12
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 328 atgggggaccgcgaacagctgctgcagcgggcgcggctggccgagcaggcggagcgctac 387
|||| ||||||||| || ||| ||||| || |||||||| ||||||||||||||||||
Sbjct: 9882857 atggtggaccgcgagcaactggtgcagaaagcccggctggcggagcaggcggagcgctac 9882916
Query: 388 gacgacatggcctccgccatgaag 411
|||||||||||| | |||||||||
Sbjct: 9882917 gacgacatggccgcggccatgaag 9882940
Score = 77.8 bits (39), Expect = 1e-11
Identities = 138/171 (80%)
Strand = Plus / Minus
Query: 363 gctggccgagcaggcggagcgctacgacgacatggcctccgccatgaaggcggtgacaga 422
||||||||||||||| ||||||||||||||||||||| || ||||||||| ||||| ||
Sbjct: 135278591 gctggccgagcaggccgagcgctacgacgacatggccacctgcatgaaggccgtgacgga 135278532
Query: 423 gctcaatgaacctctctccaatgaggaccgaaacctcctctctgtggcctacaagaatgt 482
|| | || ||||| ||||| || ||||| ||||| |||||||||||||| ||
Sbjct: 135278531 gcagggcgccgagctgtccaacgaggagcgcaacctgctctcggtggcctacaagaacgt 135278472
Query: 483 ggtcggtgcccggcggtcttcctggagggtcatcagcagcattgagcagaa 533
|||||| | ||| |||| |||||||||||||| ||||| ||||||||
Sbjct: 135278471 ggtcgggggccgcaggtccgcctggagggtcatctcgagcatcgagcagaa 135278421
Score = 63.9 bits (32), Expect = 2e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 679 gagagcaaggtcttctacctgaagatgaagggcgattactaccgctacctggccgaggtg 738
||||| ||||||||||||||||| |||||||| ||||||| ||| ||||| || |||||
Sbjct: 135251367 gagagtaaggtcttctacctgaaaatgaagggagattacttccggtaccttgctgaggtt 135251308
Query: 739 gctt 742
||||
Sbjct: 135251307 gctt 135251304
Score = 61.9 bits (31), Expect = 8e-07
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 820 atgcagccgacacaccccatccggctgggcctggccctcaacttctccgtgttctactat 879
||||| || |||||||||||||| ||||| ||||| || |||||||| || || ||||||
Sbjct: 135247876 atgcaacccacacaccccatccgcctggggctggctcttaacttctctgtattttactat 135247817
Query: 880 gagatcc 886
|||||||
Sbjct: 135247816 gagatcc 135247810
>Sscrofa_Chr17
|| Length = 69701581
Score = 81.8 bits (41), Expect = 9e-13
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 436 ctctccaatgaggaccgaaacctcctctctgtggcctacaagaatgtggtcggtgcccgg 495
|||||||| ||||| ||||||| ||||| || ||||||||||| || |||||||||||
Sbjct: 52808557 ctctccaacgaggagagaaacctgctctccgtcgcctacaagaacgtagtcggtgcccgc 52808616
Query: 496 cggtcttcctggagggtcatcagcagcattgagcagaaaac 536
|| ||||||||| | |||||| |||||| |||||||||||
Sbjct: 52808617 cgttcttcctggcgtgtcatctccagcatcgagcagaaaac 52808657
Score = 65.9 bits (33), Expect = 5e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 784 gcctacaaggaagcctttgaaattagcaaagagcacatgcagccgacacaccccatccgg 843
|||||| ||||||| ||||||||||| || | | |||||||| |||||||| || ||
Sbjct: 52812401 gcctaccaggaagcatttgaaattagtaagaaagaaatgcagcctacacacccaattcga 52812460
Query: 844 ctgggcctggccctcaacttctccgtgttctactatgagat 884
||||||||||| || || |||||||| || |||||||||||
Sbjct: 52812461 ctgggcctggcacttaatttctccgtcttttactatgagat 52812501
>Sscrofa_Chr06
|| Length = 157765593
Score = 75.8 bits (38), Expect = 5e-11
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 687 ggtcttctacctgaagatgaagggcgattactaccgctacctggccgaggtggc 740
||||||||||||||| |||||||| || |||||||| |||||||||||||||||
Sbjct: 77759112 ggtcttctacctgaaaatgaagggtgactactaccgttacctggccgaggtggc 77759165
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,769,875
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 23
Length of query: 1271
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1250
Effective length of database: 2,808,413,156
Effective search space: 3510516445000
Effective search space used: 3510516445000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)