Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012214
(2150 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850270.1| PREDICTED: similar to Insulin-like growth facto... 347 2e-95
Alignment gi|XP_861128.1| PREDICTED: similar to Insulin-like growth facto... 339 6e-93
Alignment gi|XP_861098.1| PREDICTED: similar to Insulin-like growth facto... 232 9e-61
Alignment gi|XP_861044.1| PREDICTED: similar to DNA-directed RNA polymera... 140 6e-33
Alignment gi|XP_861018.1| PREDICTED: similar to DNA-directed RNA polymera... 140 6e-33
Alignment gi|XP_860990.1| PREDICTED: similar to DNA-directed RNA polymera... 140 6e-33
Alignment gi|XP_860963.1| PREDICTED: similar to DNA-directed RNA polymera... 140 6e-33
Alignment gi|XP_860930.1| PREDICTED: similar to DNA-directed RNA polymera... 140 6e-33
Alignment gi|XP_860899.1| PREDICTED: similar to DNA-directed RNA polymera... 140 6e-33
Alignment gi|XP_860865.1| PREDICTED: similar to DNA-directed RNA polymera... 140 6e-33
>ref|XP_850270.1| PREDICTED: similar to Insulin-like growth factor binding protein 7
precursor (IGFBP-7) (IBP-7) (IGF-binding protein 7)
(MAC25 protein) (Prostacyclin-stimulating factor)
(PGI2-stimulating factor) isoform 1 [Canis familiaris].
Length = 282
Score = 347 bits (891), Expect = 2e-95
Identities = 174/253 (68%), Positives = 178/253 (70%)
Frame = +1
Query: 241 DACGXXXXXXXXXXXXXXXXXXETRDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXX 420
DACG ETRDACGCCPV RGHCAPGMEC
Sbjct: 30 DACGPCAPAACPPLPPRGCPLGETRDACGCCPVCARGEGEPCGGGGAGRGHCAPGMECVK 89
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 600
RYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT
Sbjct: 90 SRKRRKGKAGAAAGGSAASGVCVCKSRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 149
Query: 601 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELL 780
QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTP LIWNKV+RG+YGVQRTELL
Sbjct: 150 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPVLIWNKVKRGNYGVQRTELL 209
Query: 781 PGDRDNLAIQTRGGPEKHEVTGWVLISPLSKEDAGEYECHXXXXXXXXXXXXKITVVDTL 960
PGDRDNLAIQTRGGPEKHEVTGWVL+SPLSKEDAGEYECH KITVVD L
Sbjct: 210 PGDRDNLAIQTRGGPEKHEVTGWVLVSPLSKEDAGEYECHASNSQGQASASAKITVVDAL 269
Query: 961 HEIPVKKGEGAEL 999
HEIPVKKGEGA+L
Sbjct: 270 HEIPVKKGEGADL 282
>ref|XP_861128.1| PREDICTED: similar to Insulin-like growth factor binding protein 7
precursor (IGFBP-7) (IBP-7) (IGF-binding protein 7)
(MAC25 protein) (Prostacyclin-stimulating factor)
(PGI2-stimulating factor) isoform 3 [Canis familiaris].
Length = 278
Score = 339 bits (870), Expect = 6e-93
Identities = 170/248 (68%), Positives = 173/248 (69%)
Frame = +1
Query: 241 DACGXXXXXXXXXXXXXXXXXXETRDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXX 420
DACG ETRDACGCCPV RGHCAPGMEC
Sbjct: 30 DACGPCAPAACPPLPPRGCPLGETRDACGCCPVCARGEGEPCGGGGAGRGHCAPGMECVK 89
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 600
RYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT
Sbjct: 90 SRKRRKGKAGAAAGGSAASGVCVCKSRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 149
Query: 601 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELL 780
QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTP LIWNKV+RG+YGVQRTELL
Sbjct: 150 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPVLIWNKVKRGNYGVQRTELL 209
Query: 781 PGDRDNLAIQTRGGPEKHEVTGWVLISPLSKEDAGEYECHXXXXXXXXXXXXKITVVDTL 960
PGDRDNLAIQTRGGPEKHEVTGWVL+SPLSKEDAGEYECH KITVVD L
Sbjct: 210 PGDRDNLAIQTRGGPEKHEVTGWVLVSPLSKEDAGEYECHASNSQGQASASAKITVVDAL 269
Query: 961 HEIPVKKG 984
HEIPVKKG
Sbjct: 270 HEIPVKKG 277
>ref|XP_861098.1| PREDICTED: similar to Insulin-like growth factor binding protein 7
precursor (IGFBP-7) (IBP-7) (IGF-binding protein 7)
(MAC25 protein) (Prostacyclin-stimulating factor)
(PGI2-stimulating factor) isoform 2 [Canis familiaris].
Length = 237
Score = 232 bits (592), Expect = 9e-61
Identities = 130/253 (51%), Positives = 134/253 (52%)
Frame = +1
Query: 241 DACGXXXXXXXXXXXXXXXXXXETRDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXX 420
DACG ETRDACGCCPV RGHCAPGMEC
Sbjct: 30 DACGPCAPAACPPLPPRGCPLGETRDACGCCPVCARGEGEPCGGGGAGRGHCAPGMECVK 89
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 600
RYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT
Sbjct: 90 SRKRRKGKAGAAAGGSAASGVCVCKSRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 149
Query: 601 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELL 780
QV +RG+YGVQRTELL
Sbjct: 150 QV---------------------------------------------KRGNYGVQRTELL 164
Query: 781 PGDRDNLAIQTRGGPEKHEVTGWVLISPLSKEDAGEYECHXXXXXXXXXXXXKITVVDTL 960
PGDRDNLAIQTRGGPEKHEVTGWVL+SPLSKEDAGEYECH KITVVD L
Sbjct: 165 PGDRDNLAIQTRGGPEKHEVTGWVLVSPLSKEDAGEYECHASNSQGQASASAKITVVDAL 224
Query: 961 HEIPVKKGEGAEL 999
HEIPVKKGEGA+L
Sbjct: 225 HEIPVKKGEGADL 237
>ref|XP_861044.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
17 [Canis familiaris].
Length = 1099
Score = 140 bits (352), Expect = 6e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1006 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1065
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1066 RNKTQI 1071
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1071 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1099
>ref|XP_861018.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
16 [Canis familiaris].
Length = 1173
Score = 140 bits (352), Expect = 6e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1080 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1139
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1140 RNKTQI 1145
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1145 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1173
>ref|XP_860990.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
15 [Canis familiaris].
Length = 1179
Score = 140 bits (352), Expect = 6e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1086 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1145
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1146 RNKTQI 1151
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1151 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1179
>ref|XP_860963.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
14 [Canis familiaris].
Length = 1175
Score = 140 bits (352), Expect = 6e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1082 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1141
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1142 RNKTQI 1147
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1147 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1175
>ref|XP_860930.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
13 [Canis familiaris].
Length = 1180
Score = 140 bits (352), Expect = 6e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1087 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1146
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1147 RNKTQI 1152
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1152 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1180
>ref|XP_860899.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
12 [Canis familiaris].
Length = 1174
Score = 140 bits (352), Expect = 6e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1081 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1140
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1141 RNKTQI 1146
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1146 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1174
>ref|XP_860865.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
11 [Canis familiaris].
Length = 1180
Score = 140 bits (352), Expect = 6e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1087 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1146
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1147 RNKTQI 1152
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1152 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1180
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,716,561
Number of extensions: 1518158
Number of successful extensions: 4529
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4458
Number of HSP's successfully gapped: 35
Length of query: 716
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 606
Effective length of database: 15,207,544
Effective search space: 9215771664
Effective search space used: 9215771664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012214
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012214
(2150 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095770.1| insulin-like growth factor-binding protein 7... 348 1e-95
Alignment gi|NP_001092631.1| insulin-like growth factor-binding protein-l... 157 5e-38
Alignment gi|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 ... 140 6e-33
Alignment gi|XP_001249652.1| PREDICTED: insulin-like growth factor-bindin... 125 2e-28
Alignment gi|XP_002698538.1| PREDICTED: Kazal-type serine peptidase inhib... 105 2e-22
Alignment gi|XP_874800.2| PREDICTED: Kazal-type serine peptidase inhibito... 105 2e-22
Alignment gi|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2... 61 5e-09
Alignment gi|XP_002687706.1| PREDICTED: polymerase (RNA) III (DNA directe... 61 5e-09
Alignment gi|XP_002698596.1| PREDICTED: HtrA serine peptidase 1 [Bos taur... 52 2e-06
Alignment gi|XP_612097.3| PREDICTED: HtrA serine peptidase 1 [Bos taurus]. 52 2e-06
>ref|NP_001095770.1| insulin-like growth factor-binding protein 7 [Bos taurus].
Length = 282
Score = 348 bits (892), Expect = 1e-95
Identities = 174/253 (68%), Positives = 177/253 (69%)
Frame = +1
Query: 241 DACGXXXXXXXXXXXXXXXXXXETRDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXX 420
DACG ETRDACGCCPV RGHCAPGMEC
Sbjct: 30 DACGPCEPAACPPLPPRGCQLGETRDACGCCPVCARGEGEPCGGGGAGRGHCAPGMECVK 89
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 600
RYPVCGSDGVTY SGCQLRAASLRAESRGEKA+T
Sbjct: 90 SRKRRRGKAGAAAGGPVVSGVCVCKSRYPVCGSDGVTYSSGCQLRAASLRAESRGEKAIT 149
Query: 601 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELL 780
QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTP LIWNKV+RGHYGVQRTELL
Sbjct: 150 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPVLIWNKVKRGHYGVQRTELL 209
Query: 781 PGDRDNLAIQTRGGPEKHEVTGWVLISPLSKEDAGEYECHXXXXXXXXXXXXKITVVDTL 960
PGDRDNLAIQTRGGPEKHEVTGWVL+SPLSKEDAGEYECH KITVVD L
Sbjct: 210 PGDRDNLAIQTRGGPEKHEVTGWVLVSPLSKEDAGEYECHASNSQGQASASAKITVVDAL 269
Query: 961 HEIPVKKGEGAEL 999
HEIPVKKGEGAEL
Sbjct: 270 HEIPVKKGEGAEL 282
>ref|NP_001092631.1| insulin-like growth factor-binding protein-like 1 precursor [Bos
taurus].
Length = 274
Score = 157 bits (396), Expect = 5e-38
Identities = 85/214 (39%), Positives = 104/214 (48%)
Frame = +1
Query: 313 RDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXXXX 492
RD CGCC + R C PG+ C
Sbjct: 56 RDECGCCALCLGAEGASCGGRAGAR--CGPGLVCASRAAGAAPEGTGLCVCAQ------- 106
Query: 493 XXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQGPSIVTPPKDIWNVT 672
R VCGSDG +YPS C LR + +A + + G CE P ++TPP+ + NVT
Sbjct: 107 --RGSVCGSDGRSYPSVCALRLRARQAPRALPGHLHKARDGPCEFAPVVITPPQSVHNVT 164
Query: 673 GAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTGWV 852
GAQVYLSCEV +PTP + W KV R G Q E LPGD N+A+Q +GGP HE T WV
Sbjct: 165 GAQVYLSCEVRAVPTPVVTWRKVTRSPEGTQVMEELPGDHTNIAVQVQGGPSDHEATAWV 224
Query: 853 LISPLSKEDAGEYECHXXXXXXXXXXXXKITVVD 954
LI+PL KED G Y+CH +TVVD
Sbjct: 225 LINPLRKEDEGVYQCHSANAVGEAQSHGTVTVVD 258
>ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus].
Length = 1174
Score = 140 bits (352), Expect = 6e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1081 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1140
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1141 RNKTQI 1146
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1146 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1174
>ref|XP_001249652.1| PREDICTED: insulin-like growth factor-binding protein-like 1-like,
partial [Bos taurus].
Length = 124
Score = 125 bits (314), Expect = 2e-28
Identities = 57/108 (52%), Positives = 69/108 (63%)
Frame = +1
Query: 631 PSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQ 810
P ++TPP+ + NVTGAQVYLSCEV +PTP + W KV R G Q E LPGD N+A+Q
Sbjct: 1 PVVITPPQSVHNVTGAQVYLSCEVRAVPTPVVTWRKVTRSPEGTQVMEELPGDHTNIAVQ 60
Query: 811 TRGGPEKHEVTGWVLISPLSKEDAGEYECHXXXXXXXXXXXXKITVVD 954
+GGP HE T WVLI+PL KED G Y+CH +TVVD
Sbjct: 61 VQGGPSDHEATAWVLINPLRKEDEGVYQCHSANAVGEAQSHGTVTVVD 108
>ref|XP_002698538.1| PREDICTED: Kazal-type serine peptidase inhibitor domain 1-like [Bos
taurus].
Length = 304
Score = 105 bits (261), Expect = 2e-22
Identities = 64/197 (32%), Positives = 85/197 (43%), Gaps = 2/197 (1%)
Frame = +1
Query: 313 RDACGCC--PVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXX 486
RDACGCC G C +EC
Sbjct: 73 RDACGCCWECANLEGQLCDLDPSAHFYGRCGEQLECRLDAGGDLSRGEVPEPLCVCRS-- 130
Query: 487 XXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQGPSIVTPPKDIWN 666
+ P+CGSDG TY C+L+ A A +R + +T G CE P I+ P D+WN
Sbjct: 131 ----QRPLCGSDGRTYAQICRLQEA---ARARPDANLTVAHPGPCETAPQILLHPYDVWN 183
Query: 667 VTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTG 846
VTG V CEV P ++ W K +Q LPGD ++++Q RGGP++ EVTG
Sbjct: 184 VTGQDVIFGCEVFAYPMASIEWRK---DGLDIQ----LPGDDPHISVQFRGGPQRFEVTG 236
Query: 847 WVLISPLSKEDAGEYEC 897
W+ I + D G Y C
Sbjct: 237 WLQIQAVRPSDEGTYRC 253
>ref|XP_874800.2| PREDICTED: Kazal-type serine peptidase inhibitor domain 1-like [Bos
taurus].
Length = 304
Score = 105 bits (261), Expect = 2e-22
Identities = 64/197 (32%), Positives = 85/197 (43%), Gaps = 2/197 (1%)
Frame = +1
Query: 313 RDACGCC--PVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXX 486
RDACGCC G C +EC
Sbjct: 73 RDACGCCWECANLEGQLCDLDPSAHFYGRCGEQLECRLDAGGDLSRGEVPEPLCVCRS-- 130
Query: 487 XXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQGPSIVTPPKDIWN 666
+ P+CGSDG TY C+L+ A A +R + +T G CE P I+ P D+WN
Sbjct: 131 ----QRPLCGSDGRTYAQICRLQEA---ARARPDANLTVAHPGPCETAPQILLHPYDVWN 183
Query: 667 VTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTG 846
VTG V CEV P ++ W K +Q LPGD ++++Q RGGP++ EVTG
Sbjct: 184 VTGQDVIFGCEVFAYPMASIEWRK---DGLDIQ----LPGDDPHISVQFRGGPQRFEVTG 236
Query: 847 WVLISPLSKEDAGEYEC 897
W+ I + D G Y C
Sbjct: 237 WLQIQAVRPSDEGTYRC 253
>ref|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2 [Bos taurus].
Length = 1133
Score = 60.8 bits (146), Expect = 5e-09
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLRLGEM+RDC I +GA+ L ERL +SD ++V VC CG++ + C C
Sbjct: 1042 DGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHFC 1095
Query: 1863 RNKTQV 1846
++ V
Sbjct: 1096 KSSCHV 1101
>ref|XP_002687706.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide B [Bos
taurus].
Length = 1133
Score = 60.8 bits (146), Expect = 5e-09
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLRLGEM+RDC I +GA+ L ERL +SD ++V VC CG++ + C C
Sbjct: 1042 DGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHFC 1095
Query: 1863 RNKTQV 1846
++ V
Sbjct: 1096 KSSCHV 1101
>ref|XP_002698596.1| PREDICTED: HtrA serine peptidase 1 [Bos taurus].
Length = 635
Score = 52.4 bits (124), Expect = 2e-06
Identities = 34/106 (32%), Positives = 41/106 (38%)
Frame = +1
Query: 313 RDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXXXX 492
RDACGCC V G C G++C
Sbjct: 212 RDACGCCEVCGAPEGAECGLQ---EGPCGEGLQCVVPFGVPASATVRRRAQSGLCVCASN 268
Query: 493 XXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQG 630
PVCGSD TY + CQLRAAS R+E + V + +G C QG
Sbjct: 269 E---PVCGSDAKTYTNLCQLRAASRRSERLHQPPVIVLQRGACGQG 311
>ref|XP_612097.3| PREDICTED: HtrA serine peptidase 1 [Bos taurus].
Length = 635
Score = 52.4 bits (124), Expect = 2e-06
Identities = 34/106 (32%), Positives = 41/106 (38%)
Frame = +1
Query: 313 RDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXXXX 492
RDACGCC V G C G++C
Sbjct: 212 RDACGCCEVCGAPEGAECGLQ---EGPCGEGLQCVVPFGVPASATVRRRAQSGLCVCASN 268
Query: 493 XXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQG 630
PVCGSD TY + CQLRAAS R+E + V + +G C QG
Sbjct: 269 E---PVCGSDAKTYTNLCQLRAASRRSERLHQPPVIVLQRGACGQG 311
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,622,537
Number of extensions: 1532325
Number of successful extensions: 4677
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4599
Number of HSP's successfully gapped: 15
Length of query: 716
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 607
Effective length of database: 14,074,782
Effective search space: 8543392674
Effective search space used: 8543392674
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012214
(2150 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157273.1| insulin-like growth factor-binding protein 7... 355 7e-98
Alignment gi|XP_001924387.1| PREDICTED: insulin-like growth factor-bindin... 150 4e-36
Alignment gi|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II su... 140 4e-33
Alignment gi|XP_003359381.1| PREDICTED: kazal-type serine protease inhibi... 110 3e-24
Alignment gi|XP_003122075.2| PREDICTED: insulin-like growth factor-bindin... 101 2e-21
Alignment gi|XP_003355419.1| PREDICTED: DNA-directed RNA polymerase III s... 61 3e-09
Alignment gi|XP_003355418.1| PREDICTED: DNA-directed RNA polymerase III s... 61 3e-09
Alignment gi|XP_003133256.1| PREDICTED: serine protease HTRA1-like [Sus s... 52 1e-06
Alignment gi|XP_003124849.2| PREDICTED: DNA-directed RNA polymerase I sub... 52 1e-06
>ref|NP_001157273.1| insulin-like growth factor-binding protein 7 [Sus scrofa].
Length = 282
Score = 355 bits (910), Expect = 7e-98
Identities = 179/253 (70%), Positives = 179/253 (70%)
Frame = +1
Query: 241 DACGXXXXXXXXXXXXXXXXXXETRDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXX 420
DACG ETRDACGCCPV RGHCAPGMEC
Sbjct: 30 DACGPCEPATCPPLPPRGCPLGETRDACGCCPVCARGEGEPCGGGGAGRGHCAPGMECVK 89
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 600
RYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT
Sbjct: 90 SRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 149
Query: 601 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELL 780
QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELL
Sbjct: 150 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELL 209
Query: 781 PGDRDNLAIQTRGGPEKHEVTGWVLISPLSKEDAGEYECHXXXXXXXXXXXXKITVVDTL 960
PGDRDNLAIQTRGGPEKHEVTGWVLISPLSKEDAGEYECH KITVVD L
Sbjct: 210 PGDRDNLAIQTRGGPEKHEVTGWVLISPLSKEDAGEYECHAANSQGQASASAKITVVDAL 269
Query: 961 HEIPVKKGEGAEL 999
HEIPVKKGEGAEL
Sbjct: 270 HEIPVKKGEGAEL 282
>ref|XP_001924387.1| PREDICTED: insulin-like growth factor-binding protein-like 1-like
[Sus scrofa].
Length = 275
Score = 150 bits (378), Expect = 4e-36
Identities = 85/214 (39%), Positives = 102/214 (47%), Gaps = 1/214 (0%)
Frame = +1
Query: 316 DACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXXXXX 495
D CGCC R C PG+ C
Sbjct: 58 DECGCCTRCLGSEGASCGGRAGTR--CGPGLVCASRAAGTAPEGTGLCVCAQ-------- 107
Query: 496 XRYPVCGSDGVTYPSGCQLRAASLRAESRGEKA-VTQVSKGTCEQGPSIVTPPKDIWNVT 672
R VCGSDG +YPS C LR + R E R + + G CE P ++TPP+ + N+T
Sbjct: 108 -RGTVCGSDGHSYPSVCALRLRA-RHEPRAHLGHLRKARDGPCEFAPVVITPPQSVHNIT 165
Query: 673 GAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTGWV 852
GAQVYLSCEV +PTP + W KV + G Q E LPGD N+A+Q RGGP HE T WV
Sbjct: 166 GAQVYLSCEVRAVPTPVVTWRKVTQSPEGTQVLEDLPGDHVNIAVQVRGGPSDHEATAWV 225
Query: 853 LISPLSKEDAGEYECHXXXXXXXXXXXXKITVVD 954
LI PL KED G Y+CH +TVVD
Sbjct: 226 LIKPLRKEDEGVYQCHSANAVGEAQSHGTVTVVD 259
>ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa].
Length = 1167
Score = 140 bits (352), Expect = 4e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1074 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1133
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1134 RNKTQI 1139
Score = 59.3 bits (142), Expect = 8e-09
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1139 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1167
>ref|XP_003359381.1| PREDICTED: kazal-type serine protease inhibitor domain-containing
protein 1-like [Sus scrofa].
Length = 315
Score = 110 bits (275), Expect = 3e-24
Identities = 64/177 (36%), Positives = 87/177 (49%), Gaps = 13/177 (7%)
Frame = +1
Query: 505 PVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQGPSIVTPPKDIWNVTGAQV 684
P+CGSDG TY C+L+ A A +R E +T G CE GP IV+ P DIWNVTG V
Sbjct: 144 PLCGSDGRTYAQICRLQEA---ARARPEANLTVAHPGPCESGPQIVSRPYDIWNVTGQDV 200
Query: 685 YLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTGWVLISP 864
CEV P ++ W K +Q LPGD ++++Q RGGP++ EVTGW+ I
Sbjct: 201 IFGCEVFAYPMASIEWRK---DGLDIQ----LPGDDPHISVQFRGGPQRFEVTGWLQIQA 253
Query: 865 LSKEDAGEYECHXXXXXXXXXXXXKITV-------------VDTLHEIPVKKGEGAE 996
+ D G Y C +TV + +LH +P ++ E E
Sbjct: 254 VRPSDEGTYRCLARNALGQVEAPASLTVLTPDQLNSTGIPQLSSLHLLPEEEAESEE 310
>ref|XP_003122075.2| PREDICTED: insulin-like growth factor-binding protein-like 1-like
[Sus scrofa].
Length = 175
Score = 101 bits (251), Expect = 2e-21
Identities = 51/108 (47%), Positives = 60/108 (55%)
Frame = +1
Query: 631 PSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQ 810
P ++TPP+ + N+TGAQVYLSCEV P G Q E LPGD N+A+Q
Sbjct: 65 PVVITPPQSVHNITGAQVYLSCEVTQSPE-------------GTQVLEDLPGDHVNIAVQ 111
Query: 811 TRGGPEKHEVTGWVLISPLSKEDAGEYECHXXXXXXXXXXXXKITVVD 954
RGGP HE T WVLI PL KED G Y+CH +TVVD
Sbjct: 112 VRGGPSDHEATAWVLIKPLRKEDEGVYQCHSANAVGEAQSHGTVTVVD 159
>ref|XP_003355419.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Sus
scrofa].
Length = 1075
Score = 60.8 bits (146), Expect = 3e-09
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLRLGEM+RDC I +GA+ L ERL +SD ++V VC CG++ + C C
Sbjct: 984 DGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYC 1037
Query: 1863 RNKTQV 1846
++ V
Sbjct: 1038 KSSCHV 1043
>ref|XP_003355418.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Sus
scrofa].
Length = 205
Score = 60.8 bits (146), Expect = 3e-09
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLRLGEM+RDC I +GA+ L ERL +SD ++V VC CG++ + C C
Sbjct: 114 DGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYC 167
Query: 1863 RNKTQV 1846
++ V
Sbjct: 168 KSSCHV 173
>ref|XP_003133256.1| PREDICTED: serine protease HTRA1-like [Sus scrofa].
Length = 481
Score = 52.0 bits (123), Expect = 1e-06
Identities = 34/106 (32%), Positives = 41/106 (38%)
Frame = +1
Query: 313 RDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXXXX 492
RDACGCC V G C G++C
Sbjct: 60 RDACGCCEVCGAPEGAECGLQ---EGPCGEGLQCVVPFGVPASATVRRRAQAGLCVCASN 116
Query: 493 XXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQG 630
PVCGSD TY + CQLRAAS R+E + V + +G C QG
Sbjct: 117 E---PVCGSDANTYANLCQLRAASRRSERLHQPPVIVLQRGACGQG 159
>ref|XP_003124849.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Sus
scrofa].
Length = 1094
Score = 52.0 bits (123), Expect = 1e-06
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = -3
Query: 2049 NSDGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1915
N GG+R GEM+RD +AHG + L +RLF SD HVC CG
Sbjct: 989 NVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCG 1033
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,726,679
Number of extensions: 1050077
Number of successful extensions: 2831
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2788
Number of HSP's successfully gapped: 11
Length of query: 716
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 610
Effective length of database: 8,704,850
Effective search space: 5309958500
Effective search space used: 5309958500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012214
(2150 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032074.3| insulin-like growth factor-binding protein 7 is... 335 6e-92
Alignment gi|NP_001152990.1| insulin-like growth factor-binding protein 7... 319 5e-87
Alignment gi|NP_061211.1| insulin-like growth factor-binding protein-like... 146 6e-35
Alignment gi|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mu... 140 5e-33
Alignment gi|NP_849260.2| kazal-type serine protease inhibitor domain-con... 107 3e-23
Alignment gi|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [M... 61 4e-09
Alignment gi|NP_062510.2| serine protease HTRA1 precursor [Mus musculus]. 53 1e-06
Alignment gi|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus... 50 5e-06
>ref|NP_032074.3| insulin-like growth factor-binding protein 7 isoform 2 [Mus
musculus].
Length = 282
Score = 335 bits (860), Expect = 6e-92
Identities = 166/253 (65%), Positives = 176/253 (69%)
Frame = +1
Query: 241 DACGXXXXXXXXXXXXXXXXXXETRDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXX 420
DACG ETRDACGCCPV RGHCAPGMEC
Sbjct: 30 DACGPCVPASCPALPRLGCPLGETRDACGCCPVCARGEGEPCGGGAAGRGHCAPGMECVK 89
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 600
RYPVCGS+G+TYPSGCQLRAASLRAESRGEKA+T
Sbjct: 90 SRKRRKGKAGAAAGGPATLAVCVCKSRYPVCGSNGITYPSGCQLRAASLRAESRGEKAIT 149
Query: 601 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELL 780
QVSKGTCEQGPSIVTPPKDIWNVTGA+V+LSCEVIGIPTP LIWNKV+R H GVQRTELL
Sbjct: 150 QVSKGTCEQGPSIVTPPKDIWNVTGAKVFLSCEVIGIPTPVLIWNKVKRDHSGVQRTELL 209
Query: 781 PGDRDNLAIQTRGGPEKHEVTGWVLISPLSKEDAGEYECHXXXXXXXXXXXXKITVVDTL 960
PGDR+NLAIQTRGGPEKHEVTGWVL+SPLSKEDAGEYECH KITVVD L
Sbjct: 210 PGDRENLAIQTRGGPEKHEVTGWVLVSPLSKEDAGEYECHASNSQGQASAAAKITVVDAL 269
Query: 961 HEIPVKKGEGAEL 999
HEIP+KKGEGA+L
Sbjct: 270 HEIPLKKGEGAQL 282
>ref|NP_001152990.1| insulin-like growth factor-binding protein 7 isoform 1 [Mus
musculus].
Length = 313
Score = 319 bits (818), Expect = 5e-87
Identities = 166/284 (58%), Positives = 176/284 (61%), Gaps = 31/284 (10%)
Frame = +1
Query: 241 DACGXXXXXXXXXXXXXXXXXXETRDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXX 420
DACG ETRDACGCCPV RGHCAPGMEC
Sbjct: 30 DACGPCVPASCPALPRLGCPLGETRDACGCCPVCARGEGEPCGGGAAGRGHCAPGMECVK 89
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 600
RYPVCGS+G+TYPSGCQLRAASLRAESRGEKA+T
Sbjct: 90 SRKRRKGKAGAAAGGPATLAVCVCKSRYPVCGSNGITYPSGCQLRAASLRAESRGEKAIT 149
Query: 601 QVSKGTCEQG-------------------------------PSIVTPPKDIWNVTGAQVY 687
QVSKGTCEQG PSIVTPPKDIWNVTGA+V+
Sbjct: 150 QVSKGTCEQGSLIWDTQPAQRSHNPQVENRCFRDKHSREQGPSIVTPPKDIWNVTGAKVF 209
Query: 688 LSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTGWVLISPL 867
LSCEVIGIPTP LIWNKV+R H GVQRTELLPGDR+NLAIQTRGGPEKHEVTGWVL+SPL
Sbjct: 210 LSCEVIGIPTPVLIWNKVKRDHSGVQRTELLPGDRENLAIQTRGGPEKHEVTGWVLVSPL 269
Query: 868 SKEDAGEYECHXXXXXXXXXXXXKITVVDTLHEIPVKKGEGAEL 999
SKEDAGEYECH KITVVD LHEIP+KKGEGA+L
Sbjct: 270 SKEDAGEYECHASNSQGQASAAAKITVVDALHEIPLKKGEGAQL 313
>ref|NP_061211.1| insulin-like growth factor-binding protein-like 1 precursor [Mus
musculus].
Length = 270
Score = 146 bits (369), Expect = 6e-35
Identities = 80/214 (37%), Positives = 99/214 (46%)
Frame = +1
Query: 313 RDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXXXX 492
RD CGCC R C PG+ C
Sbjct: 52 RDECGCCARCLGAEGASCGGPVGSR--CGPGLVCASRASGTAPEGTGLCVCAQ------- 102
Query: 493 XXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQGPSIVTPPKDIWNVT 672
R VCGSDG +Y S C LR + A + + G CE P ++ PP+DI NVT
Sbjct: 103 --RGAVCGSDGRSYSSICALRLRARHAPRAHHGHLHKARDGPCEFAPVVLMPPRDIHNVT 160
Query: 673 GAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTGWV 852
G QV+LSCEV +PTP + W KV+ G + E LPGD N+A+Q RGGP HE T W+
Sbjct: 161 GTQVFLSCEVKAVPTPVITWKKVKHSPEGTEGLEELPGDHVNIAVQVRGGPSDHETTSWI 220
Query: 853 LISPLSKEDAGEYECHXXXXXXXXXXXXKITVVD 954
LI+PL KED G Y CH +TV+D
Sbjct: 221 LINPLRKEDEGVYHCHAANAIGEAQSHGTVTVLD 254
>ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus].
Length = 1174
Score = 140 bits (352), Expect = 5e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1081 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1140
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1141 RNKTQI 1146
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1146 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1174
>ref|NP_849260.2| kazal-type serine protease inhibitor domain-containing protein 1
[Mus musculus].
Length = 313
Score = 107 bits (268), Expect = 3e-23
Identities = 67/197 (34%), Positives = 87/197 (44%), Gaps = 2/197 (1%)
Frame = +1
Query: 313 RDACGCC--PVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXX 486
RDACGCC G C +EC
Sbjct: 80 RDACGCCWECANLEGQLCDLDPSANFYGRCGEQLECRLDAGGDLSRGEVPEPLCVCRS-- 137
Query: 487 XXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQGPSIVTPPKDIWN 666
+ P+CGSDG TY C+L+ A A +R + +T V G CE P I++ P +IWN
Sbjct: 138 ----QRPLCGSDGRTYAQICRLQEA---ARARLDANLTVVHPGPCESEPQILSQPHNIWN 190
Query: 667 VTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTG 846
VTG V CEV P ++ W K +Q LPGD ++++Q RGGP+K EVTG
Sbjct: 191 VTGQDVIFGCEVFAYPMASIEWRK---DGLDIQ----LPGDDPHISVQFRGGPQKFEVTG 243
Query: 847 WVLISPLSKEDAGEYEC 897
W+ I L D G Y C
Sbjct: 244 WLQIQALRPSDEGTYRC 260
>ref|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [Mus musculus].
Length = 1133
Score = 60.8 bits (146), Expect = 4e-09
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLRLGEM+RDC I +GA+ L ERL +SD ++V VC CG++ + C C
Sbjct: 1042 DGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYC 1095
Query: 1863 RNKTQV 1846
++ V
Sbjct: 1096 KSSCHV 1101
>ref|NP_062510.2| serine protease HTRA1 precursor [Mus musculus].
Length = 480
Score = 52.8 bits (125), Expect = 1e-06
Identities = 34/106 (32%), Positives = 41/106 (38%)
Frame = +1
Query: 313 RDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXXXX 492
RDACGCC V G C G++C
Sbjct: 59 RDACGCCEVCGALEGAACGLQ---EGPCGEGLQCVVPFGVPASATVRRRAQAGLCVCASS 115
Query: 493 XXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQG 630
PVCGSD TY + CQLRAAS R+E + V + +G C QG
Sbjct: 116 E---PVCGSDAKTYTNLCQLRAASRRSEKLRQPPVIVLQRGACGQG 158
>ref|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus musculus].
Length = 1135
Score = 50.4 bits (119), Expect = 5e-06
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = -3
Query: 2049 NSDGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1915
N GG+R GEM+RD +AHG + L +RLF SD H+C CG
Sbjct: 1030 NVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECG 1074
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 54,613,218
Number of extensions: 1290393
Number of successful extensions: 3977
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3898
Number of HSP's successfully gapped: 12
Length of query: 716
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 607
Effective length of database: 12,343,635
Effective search space: 7492586445
Effective search space used: 7492586445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012214
(2150 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001544.1| insulin-like growth factor-binding protein 7 [H... 342 8e-94
Alignment gi|NP_001007564.1| insulin-like growth factor-binding protein-l... 147 3e-35
Alignment gi|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Ho... 140 6e-33
Alignment gi|NP_112191.2| kazal-type serine protease inhibitor domain-con... 111 3e-24
Alignment gi|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 is... 61 5e-09
Alignment gi|NP_001154180.1| DNA-directed RNA polymerase III subunit RPC2... 61 5e-09
Alignment gi|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 i... 52 2e-06
Alignment gi|NP_061887.2| DNA-directed RNA polymerase I subunit RPA2 isof... 52 2e-06
Alignment gi|NP_002766.1| serine protease HTRA1 precursor [Homo sapiens]. 51 4e-06
>ref|NP_001544.1| insulin-like growth factor-binding protein 7 [Homo sapiens].
Length = 282
Score = 342 bits (877), Expect = 8e-94
Identities = 170/253 (67%), Positives = 175/253 (69%)
Frame = +1
Query: 241 DACGXXXXXXXXXXXXXXXXXXETRDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXX 420
D CG ETRDACGCCP+ RG+CAPGMEC
Sbjct: 30 DTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGRGYCAPGMECVK 89
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVT 600
RYPVCGSDG TYPSGCQLRAAS RAESRGEKA+T
Sbjct: 90 SRKRRKGKAGAAAGGPGVSGVCVCKSRYPVCGSDGTTYPSGCQLRAASQRAESRGEKAIT 149
Query: 601 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELL 780
QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTP LIWNKV+RGHYGVQRTELL
Sbjct: 150 QVSKGTCEQGPSIVTPPKDIWNVTGAQVYLSCEVIGIPTPVLIWNKVKRGHYGVQRTELL 209
Query: 781 PGDRDNLAIQTRGGPEKHEVTGWVLISPLSKEDAGEYECHXXXXXXXXXXXXKITVVDTL 960
PGDRDNLAIQTRGGPEKHEVTGWVL+SPLSKEDAGEYECH KITVVD L
Sbjct: 210 PGDRDNLAIQTRGGPEKHEVTGWVLVSPLSKEDAGEYECHASNSQGQASASAKITVVDAL 269
Query: 961 HEIPVKKGEGAEL 999
HEIPVKKGEGAEL
Sbjct: 270 HEIPVKKGEGAEL 282
>ref|NP_001007564.1| insulin-like growth factor-binding protein-like 1 precursor [Homo
sapiens].
Length = 278
Score = 147 bits (372), Expect = 3e-35
Identities = 80/213 (37%), Positives = 98/213 (46%)
Frame = +1
Query: 316 DACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXXXXX 495
D CGCC G C PG+ C
Sbjct: 61 DECGCCA--RCLGAEGASCGGRAGGRCGPGLVCASQAAGAAPEGTGLCVCAQ-------- 110
Query: 496 XRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQGPSIVTPPKDIWNVTG 675
R VCGSDG +YPS C LR + + + G CE P +V PP+ + NVTG
Sbjct: 111 -RGTVCGSDGRSYPSVCALRLRARHTPRAHPGHLHKARDGPCEFAPVVVVPPRSVHNVTG 169
Query: 676 AQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTGWVL 855
AQV LSCEV +PTP + W KV + G Q E LPGD N+A+Q RGGP HE T W+L
Sbjct: 170 AQVGLSCEVRAVPTPVITWRKVTKSPEGTQALEELPGDHVNIAVQVRGGPSDHEATAWIL 229
Query: 856 ISPLSKEDAGEYECHXXXXXXXXXXXXKITVVD 954
I+PL KED G Y+CH +TV+D
Sbjct: 230 INPLRKEDEGVYQCHAANMVGEAESHSTVTVLD 262
>ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens].
Length = 1174
Score = 140 bits (352), Expect = 6e-33
Identities = 63/66 (95%), Positives = 65/66 (98%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLR GEM+RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
Sbjct: 1081 DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1140
Query: 1863 RNKTQV 1846
RNKTQ+
Sbjct: 1141 RNKTQI 1146
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 1405 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1319
ISLVRMPYACKLLFQELMSMSIAPRMMSV
Sbjct: 1146 ISLVRMPYACKLLFQELMSMSIAPRMMSV 1174
>ref|NP_112191.2| kazal-type serine protease inhibitor domain-containing protein 1
precursor [Homo sapiens].
Length = 304
Score = 111 bits (277), Expect = 3e-24
Identities = 67/197 (34%), Positives = 87/197 (44%), Gaps = 2/197 (1%)
Frame = +1
Query: 313 RDACGCC--PVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXX 486
RDACGCC GHC +EC
Sbjct: 73 RDACGCCWECANLEGQLCDLDPSAHFYGHCGEQLECRLDTGGDLSRGEVPEPLCACRS-- 130
Query: 487 XXXXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQGPSIVTPPKDIWN 666
+ P+CGSDG TY C+L+ A A +R + +T G CE GP IV+ P D WN
Sbjct: 131 ----QSPLCGSDGHTYSQICRLQEA---ARARPDANLTVAHPGPCESGPQIVSHPYDTWN 183
Query: 667 VTGAQVYLSCEVIGIPTPALIWNKVQRGHYGVQRTELLPGDRDNLAIQTRGGPEKHEVTG 846
VTG V CEV P ++ W K +Q LPGD ++++Q RGGP++ EVTG
Sbjct: 184 VTGQDVIFGCEVFAYPMASIEWRK---DGLDIQ----LPGDDPHISVQFRGGPQRFEVTG 236
Query: 847 WVLISPLSKEDAGEYEC 897
W+ I + D G Y C
Sbjct: 237 WLQIQAVRPSDEGTYRC 253
>ref|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Homo
sapiens].
Length = 1133
Score = 60.8 bits (146), Expect = 5e-09
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLRLGEM+RDC I +GA+ L ERL +SD ++V VC CG++ + C C
Sbjct: 1042 DGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYC 1095
Query: 1863 RNKTQV 1846
++ V
Sbjct: 1096 KSSCHV 1101
>ref|NP_001154180.1| DNA-directed RNA polymerase III subunit RPC2 isoform 2 [Homo
sapiens].
Length = 1075
Score = 60.8 bits (146), Expect = 5e-09
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = -3
Query: 2043 DGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC 1864
DGGLRLGEM+RDC I +GA+ L ERL +SD ++V VC CG++ + C C
Sbjct: 984 DGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYC 1037
Query: 1863 RNKTQV 1846
++ V
Sbjct: 1038 KSSCHV 1043
>ref|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Homo sapiens].
Length = 1079
Score = 52.0 bits (123), Expect = 2e-06
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = -3
Query: 2049 NSDGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1915
N GG+R GEM+RD +AHG + L +RLF SD HVC CG
Sbjct: 974 NVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCG 1018
>ref|NP_061887.2| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Homo sapiens].
Length = 1135
Score = 52.0 bits (123), Expect = 2e-06
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = -3
Query: 2049 NSDGGLRLGEMKRDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 1915
N GG+R GEM+RD +AHG + L +RLF SD HVC CG
Sbjct: 1030 NVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCG 1074
>ref|NP_002766.1| serine protease HTRA1 precursor [Homo sapiens].
Length = 480
Score = 51.2 bits (121), Expect = 4e-06
Identities = 34/106 (32%), Positives = 40/106 (37%)
Frame = +1
Query: 313 RDACGCCPVXXXXXXXXXXXXXXXRGHCAPGMECXXXXXXXXXXXXXXXXXXXXXXXXXX 492
RDACGCC V G C G++C
Sbjct: 59 RDACGCCEVCGAPEGAACGLQ---EGPCGEGLQCVVPFGVPASATVRRRAQAGLCVCASS 115
Query: 493 XXRYPVCGSDGVTYPSGCQLRAASLRAESRGEKAVTQVSKGTCEQG 630
PVCGSD TY + CQLRAAS R+E V + +G C QG
Sbjct: 116 E---PVCGSDANTYANLCQLRAASRRSERLHRPPVIVLQRGACGQG 158
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,854,889
Number of extensions: 1505987
Number of successful extensions: 4814
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4699
Number of HSP's successfully gapped: 12
Length of query: 716
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 606
Effective length of database: 14,671,124
Effective search space: 8890701144
Effective search space used: 8890701144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012214
(2150 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1679 0.0
Sscrofa_Chr11 220 2e-54
>Sscrofa_Chr08
|| Length = 148491826
Score = 1679 bits (847), Expect = 0.0
Identities = 870/875 (99%), Gaps = 2/875 (0%)
Strand = Plus / Minus
Query: 1277 ccatatcatagaaacaagacacacagagttgtaagagagctaaacactcatcatccgagg 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064638 ccatatcatagaaacaagacacacagagttgtaagagagctaaacactcatcatccgagg 59064579
Query: 1337 tgcaatactcatggacatgagctcctgaaacagcagcttgcaggcatacggcatccgcac 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064578 tgcaatactcatggacatgagctcctgaaacagcagcttgcaggcatacggcatccgcac 59064519
Query: 1397 cagcgagatctagggtagagagaaggccattagcgaggacagacagcagcgccctcatgg 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064518 cagcgagatctagggtagagagaaggccattagcgaggacagacagcagcgccctcatgg 59064459
Query: 1457 cccttaacccactcgcttaggttgtgagtgcgtgactggtgccagcactcagcctatgac 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064458 cccttaacccactcgcttaggttgtgagtgcgtgactggtgccagcactcagcctatgac 59064399
Query: 1517 cttggcctctggtggttccctctcttaactggcttcggtatttcactctttctgctagac 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064398 cttggcctctggtggttccctctcttaactggcttcggtatttcactctttctgctagac 59064339
Query: 1577 ctaatttatattcaccttcatgatttaaagttccttctacaagtccttattacttccaaa 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064338 ctaatttatattcaccttcatgatttaaagttccttctacaagtccttattacttccaaa 59064279
Query: 1637 agatgaacagccaagaggaattctaaggtaaaacttacactggttttttgaaaaacctaa 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064278 agatgaacagccaagaggaattctaaggtaaaacttacactggttttttgaaaaacctaa 59064219
Query: 1697 ttgttaccttttccctcatttcaaactaggaatctgacagaagcttgctgtcaaaactgc 1756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064218 ttgttaccttttccctcatttcaaactaggaatctgacagaagcttgctgtcaaaactgc 59064159
Query: 1757 ccatctgttccatcccactaaatctgcccacatggtcagaccagcagggtcccatcctga 1816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064158 ccatctgttccatcccactaaatctgcccacatggtcagaccagcagggtcccatcctga 59064099
Query: 1817 acaagagcacctgcccgtgaggtctagcgcacctgagtcttattccggcagcctctgcat 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064098 acaagagcacctgcccgtgaggtctagcgcacctgagtcttattccggcagcctctgcat 59064039
Query: 1877 tcatacgtatgggtccgggtgttagcgatcgccattatgccacacaggttgcagacatga 1936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064038 tcatacgtatgggtccgggtgttagcgatcgccattatgccacacaggttgcagacatga 59063979
Query: 1937 acctgataaggatctgatgcctcaaatagtctttcccttaaaaactgggctgctccatgg 1996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59063978 acctgataaggatctgatgcctcaaatagtctttcccttaaaaactgggctgctccatgg 59063919
Query: 1997 gcaatctgacagtctcgtttcatttctcccaaacgcaggccaccgtcactgttaagagaa 2056
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 59063918 gcaatctgacagtctcgttccatttctccaaaacgcaggccaccgtcactgttaagagaa 59063859
Query: 2057 aaacagctgactattttgtgcttattttctattatccatgctactttgactaaacggcaa 2116
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 59063858 aaacagctgactattttgtgcttattttctattatcaatgctactttgactaa-cggcaa 59063800
Query: 2117 aa-taaagaacactgtttaggaaaggagatttgga 2150
|| ||||||||||||||||||||||||||||||||
Sbjct: 59063799 aaataaagaacactgtttaggaaaggagatttgga 59063765
Score = 537 bits (271), Expect = e-150
Identities = 271/271 (100%)
Strand = Plus / Minus
Query: 981 aggtgaaggtgctgagctgtaaacctgcagagtatattagtctgcgtagctaatagtcat 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064935 aggtgaaggtgctgagctgtaaacctgcagagtatattagtctgcgtagctaatagtcat 59064876
Query: 1041 ggataactacagccctggttctcacctaataaccagcttcttttcatgcagtacactaac 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064875 ggataactacagccctggttctcacctaataaccagcttcttttcatgcagtacactaac 59064816
Query: 1101 actttagttatattcagtggtttttacacagtgaaatatgaaataaaggtaacacatcaa 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064815 actttagttatattcagtggtttttacacagtgaaatatgaaataaaggtaacacatcaa 59064756
Query: 1161 gactatctacaaaagctgtatttacagaaaagcatgcttatcatgaaacaaaacaaataa 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59064755 gactatctacaaaagctgtatttacagaaaagcatgcttatcatgaaacaaaacaaataa 59064696
Query: 1221 aatgctttttctcacaatacagtacattttc 1251
|||||||||||||||||||||||||||||||
Sbjct: 59064695 aatgctttttctcacaatacagtacattttc 59064665
Score = 476 bits (240), Expect = e-131
Identities = 240/240 (100%)
Strand = Plus / Minus
Query: 391 cactgcgcgccgggcatggagtgcgtgaagagccgcaagaggcggaagggtaaagcgggc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59139161 cactgcgcgccgggcatggagtgcgtgaagagccgcaagaggcggaagggtaaagcgggc 59139102
Query: 451 gcagcagccggcggcccgggcgtaagcggtgtgtgcgtgtgcaagagccgctacccggtg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59139101 gcagcagccggcggcccgggcgtaagcggtgtgtgcgtgtgcaagagccgctacccggtg 59139042
Query: 511 tgcggcagcgacggcgtcacctaccccagcggctgccagctgcgcgccgccagcctgagg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59139041 tgcggcagcgacggcgtcacctaccccagcggctgccagctgcgcgccgccagcctgagg 59138982
Query: 571 gccgagagccgcggggagaaagccgtcacccaggtcagcaagggcacctgcgagcaaggt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59138981 gccgagagccgcggggagaaagccgtcacccaggtcagcaagggcacctgcgagcaaggt 59138922
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 855 gatatctcctcttagtaaggaagacgctggagagtatgagtgccatgcagctaactccca 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59066033 gatatctcctcttagtaaggaagacgctggagagtatgagtgccatgcagctaactccca 59065974
Query: 915 aggacaggcttcagcatcagcaaaaattacagtggttgacactttacatgagataccagt 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59065973 aggacaggcttcagcatcagcaaaaattacagtggttgacactttacatgagataccagt 59065914
Query: 975 gaaaaaaggt 984
||||||||||
Sbjct: 59065913 gaaaaaaggt 59065904
Score = 236 bits (119), Expect = 4e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 737 aggtacaaaggggtcactatggagttcaaaggacggaactcttgcctggtgaccgagata 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59066963 aggtacaaaggggtcactatggagttcaaaggacggaactcttgcctggtgaccgagata 59066904
Query: 797 acctggccattcagacgcggggtggcccagaaaagcatgaagtgacgggctgggtgctg 855
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59066903 acctggccattcagacgcggggtggcccagaaaagcatgaagtgacgggctgggtgctg 59066845
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 627 aggtccttccatcgtgacaccccctaaggacatctggaatgtcactggtgcccaggtgta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59072636 aggtccttccatcgtgacaccccctaaggacatctggaatgtcactggtgcccaggtgta 59072577
Query: 687 cctgagctgcgaggtcatcggaatcccaacccctgccctcatctggaacaaggt 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59072576 cctgagctgcgaggtcatcggaatcccaacccctgccctcatctggaacaaggt 59072523
Score = 95.6 bits (48), Expect = 1e-16
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 114 aatcgcgctccggctgccgccctgagccccgcgccccgttatggagcg 161
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59139438 aatcgcgctccggctgccgccctgagccccgcgccccgttatggagcg 59139391
Score = 73.8 bits (37), Expect = 4e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 304 ggcgagacccgcgacgcgtgcggctgctgcccggtgt 340
|||||||||||||||||||||||||||||||||||||
Sbjct: 59139248 ggcgagacccgcgacgcgtgcggctgctgcccggtgt 59139212
>Sscrofa_Chr11
|| Length = 87690581
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1 tagttatattcatgtcttcctttaaagagagtagaatcttacaaatgttcttctaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13513153 tagttatattcatgtcttcctttaaagagagtagaatcttacaaatgttcttctaaataa 13513094
Query: 61 gtagtagaagaaaagaaatagatgtgagaggaagaagtccttttattacct 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13513093 gtagtagaagaaaagaaatagatgtgagaggaagaagtccttttattacct 13513043
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,386,160
Number of extensions: 514
Number of successful extensions: 514
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 9
Length of query: 2150
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2128
Effective length of database: 2,808,408,574
Effective search space: 5976293445472
Effective search space used: 5976293445472
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)