Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012219
(967 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020740.1| heat shock protein beta-1 [Bos taurus]. 361 e-100
Alignment gi|NP_776715.1| alpha-crystallin B chain [Bos taurus]. 118 9e-27
Alignment gi|NP_001014955.1| heat shock protein beta-8 [Bos taurus]. 111 8e-25
Alignment gi|NP_776714.1| alpha-crystallin A chain [Bos taurus]. 103 2e-22
Alignment gi|NP_001069495.1| heat shock protein beta-6 [Bos taurus]. 98 1e-20
Alignment gi|NP_001091850.1| heat shock 27kDa protein 2 [Bos taurus]. 96 4e-20
Alignment gi|NP_001040035.1| heat shock protein beta-3 [Bos taurus]. 72 1e-12
>ref|NP_001020740.1| heat shock protein beta-1 [Bos taurus].
Length = 204
Score = 361 bits (926), Expect = e-100
Identities = 178/206 (86%), Positives = 183/206 (88%)
Frame = +3
Query: 147 MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLX 326
M ERRVPFSLLR PSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVR L
Sbjct: 1 MAERRVPFSLLRGPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRALP 60
Query: 327 XXXXXXXXXXXXXXYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVV 506
Y+R LSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVV
Sbjct: 61 AAAIEGPA------YNRALSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVV 114
Query: 507 EITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE 686
EITGKHEERQDEHG+ISRCFTRKYTLPPGVDPT VSSSLSPEGTL+VEAPLPK ATQSAE
Sbjct: 115 EITGKHEERQDEHGYISRCFTRKYTLPPGVDPTLVSSSLSPEGTLTVEAPLPKSATQSAE 174
Query: 687 ITIPVTFEARAQLGGTEAGKSEKPGT 764
ITIPVTF+ARAQLGG EAGKSE+P T
Sbjct: 175 ITIPVTFQARAQLGGPEAGKSEQPET 200
>ref|NP_776715.1| alpha-crystallin B chain [Bos taurus].
Length = 175
Score = 118 bits (295), Expect = 9e-27
Identities = 76/173 (43%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Frame = +3
Query: 204 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSR 377
R ++P HS RLFDQ FG L + S S P Y+RP + R
Sbjct: 12 RPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYLRP--------------PSFLR 56
Query: 378 LLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFIS 557
S + +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFIS
Sbjct: 57 APS-WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 115
Query: 558 RCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 716
R F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 116 REFHRKYRIPADVDPLAITSSLSSDGVLTVNG--PRKQASGPERTIPITREEK 166
>ref|NP_001014955.1| heat shock protein beta-8 [Bos taurus].
Length = 196
Score = 111 bits (278), Expect = 8e-25
Identities = 68/171 (39%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
Frame = +3
Query: 195 DPFRDWYPAHSRLFDQAFGLPRLPEE----WSQWLS---HSGWPGYVRPLXXXXXXXXXX 353
DPFRD P SRL D FG+ P++ W W S WPG +R
Sbjct: 19 DPFRD-SPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSAWPGTLRSGMVPRGPTAMT 77
Query: 354 XXXXXYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEER 533
+ G S + W+V ++V+ F PEEL VKTKDG VE++GKHEE+
Sbjct: 78 RFGVP---------AEGRSPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVEVSGKHEEK 128
Query: 534 QDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE 686
Q E G +S+ FT+K LP VDP V +SLSPEG L +EAP P + E
Sbjct: 129 QQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAPQVPPYSPFGE 179
>ref|NP_776714.1| alpha-crystallin A chain [Bos taurus].
Length = 173
Score = 103 bits (257), Expect = 2e-22
Identities = 66/171 (38%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Frame = +3
Query: 210 WYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSR 389
+YP SRLFDQ FG + +LS + P Y + L
Sbjct: 17 FYP--SRLFDQFFGEGLFEYDLLPFLSSTISPYYRQSLFRTV------------------ 56
Query: 390 QLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFT 569
L SG+SE++ D++ + LDV HF+PE+LTVK ++ VEI GKH ERQD+HG+ISR F
Sbjct: 57 -LDSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFH 115
Query: 570 RKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQS--AEITIPVTFEAR 716
R+Y LP VD + +S SLS +G L+ P + +E IPV+ E +
Sbjct: 116 RRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVSREEK 166
>ref|NP_001069495.1| heat shock protein beta-6 [Bos taurus].
Length = 164
Score = 97.8 bits (242), Expect = 1e-20
Identities = 59/151 (39%), Positives = 80/151 (52%)
Frame = +3
Query: 219 AHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQLS 398
A RLFDQ FG L E + + P Y+R + ++
Sbjct: 24 APGRLFDQRFGEGLLEAELAALCPAALAPYYLR----------------------APSVA 61
Query: 399 SGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKY 578
+++ + V LDV HF+PEE+ VK VE+ +HEER DEHG+I+R F R+Y
Sbjct: 62 LPTAQVSTDPGHFSVLLDVKHFSPEEIAVKVVGDHVEVHARHEERPDEHGYIAREFHRRY 121
Query: 579 TLPPGVDPTQVSSSLSPEGTLSVEAPLPKPA 671
LPPGVDP V+S+LSPEG LS++A P PA
Sbjct: 122 RLPPGVDPAAVTSALSPEGVLSIQA-APAPA 151
>ref|NP_001091850.1| heat shock 27kDa protein 2 [Bos taurus].
Length = 182
Score = 96.3 bits (238), Expect = 4e-20
Identities = 55/144 (38%), Positives = 82/144 (56%)
Frame = +3
Query: 225 SRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQLSSG 404
SRL +Q FG LPEE + G+ YVRP +G
Sbjct: 22 SRLGEQRFGEGLLPEEILTPTLYHGY--YVRPRAAPGGEGSR----------------AG 63
Query: 405 VSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTL 584
SE++ + +++ SLDV+HF P+E+TV+T D ++E++ +H +R D HGF+SR F R Y L
Sbjct: 64 ASELRLSEGKFQASLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVL 123
Query: 585 PPGVDPTQVSSSLSPEGTLSVEAP 656
P VDP +V ++LS +G L++EAP
Sbjct: 124 PADVDPWRVRAALSHDGILNLEAP 147
>ref|NP_001040035.1| heat shock protein beta-3 [Bos taurus].
Length = 149
Score = 71.6 bits (174), Expect = 1e-12
Identities = 35/78 (44%), Positives = 51/78 (65%)
Frame = +3
Query: 417 QQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTLPPGV 596
Q+ R++V LDV F PE++ ++T +G + I +H R DEHGFISR FTR+Y LP G+
Sbjct: 64 QRGESRFQVLLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGI 123
Query: 597 DPTQVSSSLSPEGTLSVE 650
+ +S+ L +G L VE
Sbjct: 124 ETKDLSAILCHDGILVVE 141
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,092,112
Number of extensions: 751513
Number of successful extensions: 3629
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3619
Number of HSP's successfully gapped: 8
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012219
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012219
(967 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003295.1| heat shock protein beta-1 [Canis lupus famil... 354 6e-98
Alignment gi|XP_862288.1| PREDICTED: similar to Alpha crystallin B chain ... 118 1e-26
Alignment gi|XP_536576.1| PREDICTED: similar to Alpha crystallin B chain ... 118 1e-26
Alignment gi|NP_001003029.1| heat shock protein beta-8 [Canis lupus famil... 112 4e-25
Alignment gi|XP_862258.1| PREDICTED: similar to Alpha crystallin B chain ... 111 9e-25
Alignment gi|XP_862208.1| PREDICTED: similar to Alpha crystallin B chain ... 105 6e-23
Alignment gi|XP_862187.1| PREDICTED: similar to Alpha crystallin B chain ... 105 6e-23
Alignment gi|NP_001074367.1| alpha-crystallin A chain [Canis lupus famili... 102 4e-22
Alignment gi|XP_862156.1| PREDICTED: similar to Alpha crystallin B chain ... 102 7e-22
Alignment gi|XP_854111.1| PREDICTED: similar to heat shock 27kD protein 2... 94 3e-19
>ref|NP_001003295.1| heat shock protein beta-1 [Canis lupus familiaris].
Length = 209
Score = 354 bits (909), Expect = 6e-98
Identities = 174/209 (83%), Positives = 182/209 (87%), Gaps = 2/209 (0%)
Frame = +3
Query: 147 MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLX 326
MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEW+QW HSGWPGYVRP+
Sbjct: 1 MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWAQWFGHSGWPGYVRPIP 60
Query: 327 XXXXXXXXXXXXXX--YSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDG 500
YSR LSRQLSSGVSEI+QTADRWRVSLDVNHFAPEELTVKTKDG
Sbjct: 61 PAVEGPAAAAAAAAPAYSRALSRQLSSGVSEIRQTADRWRVSLDVNHFAPEELTVKTKDG 120
Query: 501 VVEITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQS 680
VVEITGKHEERQDEHG+ISR T KYTLPPGVDPT VSSSLSPEGTL+VEAP+PKPATQS
Sbjct: 121 VVEITGKHEERQDEHGYISRRLTPKYTLPPGVDPTLVSSSLSPEGTLTVEAPMPKPATQS 180
Query: 681 AEITIPVTFEARAQLGGTEAGKSEKPGTK 767
AEITIPVTFEARAQ+GG EAGKSE+ G K
Sbjct: 181 AEITIPVTFEARAQIGGPEAGKSEQSGAK 209
>ref|XP_862288.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) (Rosenthal fiber component)
(Heat-shock protein beta-5) (HspB5) isoform 6 [Canis
familiaris].
Length = 175
Score = 118 bits (295), Expect = 1e-26
Identities = 76/173 (43%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Frame = +3
Query: 204 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSR 377
R ++P HS RLFDQ FG L + S S P Y+RP + R
Sbjct: 12 RPFFPFHSPSRLFDQFFGEHLLESDLFP-TSTSLSPFYLRP--------------PSFLR 56
Query: 378 LLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFIS 557
S + +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFIS
Sbjct: 57 APS-WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 115
Query: 558 RCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 716
R F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 116 REFHRKYRIPADVDPLAITSSLSSDGVLTVNG--PRKQASGPERTIPITREEK 166
>ref|XP_536576.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) (Rosenthal fiber component)
(Heat-shock protein beta-5) (HspB5) isoform 1 [Canis
familiaris].
Length = 175
Score = 118 bits (295), Expect = 1e-26
Identities = 76/173 (43%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Frame = +3
Query: 204 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSR 377
R ++P HS RLFDQ FG L + S S P Y+RP + R
Sbjct: 12 RPFFPFHSPSRLFDQFFGEHLLESDLFP-TSTSLSPFYLRP--------------PSFLR 56
Query: 378 LLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFIS 557
S + +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFIS
Sbjct: 57 APS-WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 115
Query: 558 RCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 716
R F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 116 REFHRKYRIPADVDPLAITSSLSSDGVLTVNG--PRKQASGPERTIPITREEK 166
>ref|NP_001003029.1| heat shock protein beta-8 [Canis lupus familiaris].
Length = 196
Score = 112 bits (281), Expect = 4e-25
Identities = 74/190 (38%), Positives = 97/190 (51%), Gaps = 10/190 (5%)
Frame = +3
Query: 147 MTERRVPFSLLRSPSW---DPFRDWYPAHSRLFDQAFGLPRLPEE----WSQWLS---HS 296
M + ++PFS PS DPFRD P SRL D FG+ P++ W W +
Sbjct: 1 MADGQMPFSC-HYPSRLRRDPFRD-SPLPSRLLDDDFGMDPFPDDLTSSWRNWALPRFST 58
Query: 297 GWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEE 476
GWPG +R + G S + W+V ++V+ F PEE
Sbjct: 59 GWPGTLRSGMVPRGPTAAARFGVP---------AEGRSPPPFPGEPWKVCVNVHSFKPEE 109
Query: 477 LTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAP 656
L VKTKDG VE++GKHEE+Q E G +S+ FT+K LP VDP V +SLSPEG L +EAP
Sbjct: 110 LMVKTKDGYVEVSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAP 169
Query: 657 LPKPATQSAE 686
P + E
Sbjct: 170 QVPPYSPFGE 179
>ref|XP_862258.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) (Rosenthal fiber component)
(Heat-shock protein beta-5) (HspB5) isoform 5 [Canis
familiaris].
Length = 192
Score = 111 bits (278), Expect = 9e-25
Identities = 74/175 (42%), Positives = 96/175 (54%), Gaps = 4/175 (2%)
Frame = +3
Query: 204 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSR 377
R ++P HS RLFDQ FG L + S S P Y+RP + R
Sbjct: 12 RPFFPFHSPSRLFDQFFGEHLLESDLFP-TSTSLSPFYLRPPSFLRAPSWIDTGLSEHLR 70
Query: 378 LL--SRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGF 551
L + L + ++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGF
Sbjct: 71 HLYVHQGLRNTRLLMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGF 130
Query: 552 ISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 716
ISR F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 131 ISREFHRKYRIPADVDPLAITSSLSSDGVLTVNG--PRKQASGPERTIPITREEK 183
>ref|XP_862208.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) isoform 4 [Canis familiaris].
Length = 108
Score = 105 bits (262), Expect = 6e-23
Identities = 53/96 (55%), Positives = 66/96 (68%)
Frame = +3
Query: 429 DRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQ 608
DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFISR F RKY +P VDP
Sbjct: 6 DRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLA 65
Query: 609 VSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 716
++SSLS +G L+V P+ E TIP+T E +
Sbjct: 66 ITSSLSSDGVLTVNG--PRKQASGPERTIPITREEK 99
>ref|XP_862187.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) isoform 3 [Canis familiaris].
Length = 108
Score = 105 bits (262), Expect = 6e-23
Identities = 53/96 (55%), Positives = 66/96 (68%)
Frame = +3
Query: 429 DRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQ 608
DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFISR F RKY +P VDP
Sbjct: 6 DRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLA 65
Query: 609 VSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 716
++SSLS +G L+V P+ E TIP+T E +
Sbjct: 66 ITSSLSSDGVLTVNG--PRKQASGPERTIPITREEK 99
>ref|NP_001074367.1| alpha-crystallin A chain [Canis lupus familiaris].
Length = 173
Score = 102 bits (255), Expect = 4e-22
Identities = 66/171 (38%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Frame = +3
Query: 210 WYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSR 389
+YP SRLFDQ FG + +LS + P Y + L
Sbjct: 17 FYP--SRLFDQFFGEGLFEYDLLPFLSSTISPYYRQSLFRTV------------------ 56
Query: 390 QLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFT 569
L SG+SE++ D++ + LDV HF+PE+LTVK + VEI GKH ERQD+HG+ISR F
Sbjct: 57 -LDSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVLEDFVEIHGKHNERQDDHGYISREFH 115
Query: 570 RKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQS--AEITIPVTFEAR 716
R+Y LP VD + +S SLS +G L+ P + +E IPV+ E +
Sbjct: 116 RRYRLPSNVDQSALSCSLSADGMLTFSGPKVPSGVDAGHSERAIPVSREEK 166
>ref|XP_862156.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) (Rosenthal fiber component)
(Heat-shock protein beta-5) (HspB5) isoform 2 [Canis
familiaris].
Length = 161
Score = 102 bits (253), Expect = 7e-22
Identities = 65/142 (45%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Frame = +3
Query: 204 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSR 377
R ++P HS RLFDQ FG L + S S P Y+RP + R
Sbjct: 12 RPFFPFHSPSRLFDQFFGEHLLESDLFP-TSTSLSPFYLRP--------------PSFLR 56
Query: 378 LLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFIS 557
S + +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFIS
Sbjct: 57 APS-WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 115
Query: 558 RCFTRKYTLPPGVDPTQVSSSL 623
R F RKY +P VDP ++SSL
Sbjct: 116 REFHRKYRIPADVDPLAITSSL 137
>ref|XP_854111.1| PREDICTED: similar to heat shock 27kD protein 2 [Canis familiaris].
Length = 182
Score = 93.6 bits (231), Expect = 3e-19
Identities = 54/144 (37%), Positives = 82/144 (56%)
Frame = +3
Query: 225 SRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQLSSG 404
SRL +Q FG LPEE + G+ YVRP + + +G
Sbjct: 22 SRLGEQRFGEGLLPEEILTPTLYHGY--YVRPR----------------AARAAEGSRAG 63
Query: 405 VSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTL 584
SE++ +++ LDV+HF P+E+TV+T D ++E++ +H +R D HGF+SR F R Y L
Sbjct: 64 ASELRLRNGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVL 123
Query: 585 PPGVDPTQVSSSLSPEGTLSVEAP 656
P VDP +V ++LS +G L++EAP
Sbjct: 124 PADVDPWRVRAALSHDGILNLEAP 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,262,376
Number of extensions: 755933
Number of successful extensions: 3952
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3937
Number of HSP's successfully gapped: 12
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012219
(967 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354541.1| PREDICTED: heat shock protein beta-1-like is... 449 e-127
Alignment gi|XP_003354542.1| PREDICTED: heat shock protein beta-1-like is... 393 e-110
Alignment gi|NP_001007519.1| heat shock protein beta-1 [Sus scrofa]. 393 e-110
Alignment gi|XP_003357342.1| PREDICTED: alpha-crystallin B chain [Sus scr... 117 1e-26
Alignment gi|XP_003357339.1| PREDICTED: alpha-crystallin B chain-like [Su... 117 1e-26
Alignment gi|XP_001929620.1| PREDICTED: heat shock protein beta-8 [Sus sc... 112 4e-25
Alignment gi|XP_003355906.1| PREDICTED: hypothetical protein LOC494560 [S... 98 6e-21
Alignment gi|XP_003127107.1| PREDICTED: hypothetical protein LOC494560 [S... 98 6e-21
Alignment gi|XP_003355923.1| PREDICTED: heat shock protein beta-6-like [S... 96 4e-20
Alignment gi|XP_003127108.1| PREDICTED: hypothetical protein LOC494560 [S... 96 4e-20
>ref|XP_003354541.1| PREDICTED: heat shock protein beta-1-like isoform 1 [Sus scrofa].
Length = 269
Score = 449 bits (1156), Expect = e-127
Identities = 223/255 (87%), Positives = 224/255 (87%)
Frame = +3
Query: 3 VIAINRDLKHRLLKIPGWPIIKALRARPTETNXXXXXXXXXXXXXXXXMTERRVPFSLLR 182
VIAINRDLKHRLLKIPGWPIIKALRARPT+TN MTERRVPFSLLR
Sbjct: 15 VIAINRDLKHRLLKIPGWPIIKALRARPTDTNSPSPSRSRTRPASAASMTERRVPFSLLR 74
Query: 183 SPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXX 362
SPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPL
Sbjct: 75 SPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLPPPAIEGPAAVAA 134
Query: 363 XXYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDE 542
YSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDE
Sbjct: 135 PAYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDE 194
Query: 543 HGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEARAQ 722
HGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEARAQ
Sbjct: 195 HGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEARAQ 254
Query: 723 LGGTEAGKSEKPGTK 767
LGGTEAGKSEKPGTK
Sbjct: 255 LGGTEAGKSEKPGTK 269
>ref|XP_003354542.1| PREDICTED: heat shock protein beta-1-like isoform 2 [Sus scrofa].
Length = 207
Score = 393 bits (1009), Expect = e-110
Identities = 192/207 (92%), Positives = 192/207 (92%)
Frame = +3
Query: 147 MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLX 326
MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPL
Sbjct: 1 MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLP 60
Query: 327 XXXXXXXXXXXXXXYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVV 506
YSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVV
Sbjct: 61 PPAIEGPAAVAAPAYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVV 120
Query: 507 EITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE 686
EITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE
Sbjct: 121 EITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE 180
Query: 687 ITIPVTFEARAQLGGTEAGKSEKPGTK 767
ITIPVTFEARAQLGGTEAGKSEKPGTK
Sbjct: 181 ITIPVTFEARAQLGGTEAGKSEKPGTK 207
>ref|NP_001007519.1| heat shock protein beta-1 [Sus scrofa].
Length = 207
Score = 393 bits (1009), Expect = e-110
Identities = 192/207 (92%), Positives = 192/207 (92%)
Frame = +3
Query: 147 MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLX 326
MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPL
Sbjct: 1 MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLP 60
Query: 327 XXXXXXXXXXXXXXYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVV 506
YSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVV
Sbjct: 61 PPAIEGPAAVAAPAYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVV 120
Query: 507 EITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE 686
EITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE
Sbjct: 121 EITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE 180
Query: 687 ITIPVTFEARAQLGGTEAGKSEKPGTK 767
ITIPVTFEARAQLGGTEAGKSEKPGTK
Sbjct: 181 ITIPVTFEARAQLGGTEAGKSEKPGTK 207
>ref|XP_003357342.1| PREDICTED: alpha-crystallin B chain [Sus scrofa].
Length = 175
Score = 117 bits (292), Expect = 1e-26
Identities = 76/173 (43%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Frame = +3
Query: 204 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSR 377
R ++P HS RLFDQ FG L + S S P Y RP + R
Sbjct: 12 RPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRP--------------PSFLR 56
Query: 378 LLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFIS 557
S + +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFIS
Sbjct: 57 APS-WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 115
Query: 558 RCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 716
R F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 116 REFHRKYRIPADVDPLTITSSLSSDGVLTVNG--PRRQASGPERTIPITREEK 166
>ref|XP_003357339.1| PREDICTED: alpha-crystallin B chain-like [Sus scrofa].
Length = 175
Score = 117 bits (292), Expect = 1e-26
Identities = 76/173 (43%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Frame = +3
Query: 204 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSR 377
R ++P HS RLFDQ FG L + S S P Y RP + R
Sbjct: 12 RPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRP--------------PSFLR 56
Query: 378 LLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFIS 557
S + +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFIS
Sbjct: 57 APS-WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 115
Query: 558 RCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 716
R F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 116 REFHRKYRIPADVDPLTITSSLSSDGVLTVNG--PRRQASGPERTIPITREEK 166
>ref|XP_001929620.1| PREDICTED: heat shock protein beta-8 [Sus scrofa].
Length = 196
Score = 112 bits (279), Expect = 4e-25
Identities = 69/171 (40%), Positives = 88/171 (51%), Gaps = 7/171 (4%)
Frame = +3
Query: 195 DPFRDWYPAHSRLFDQAFGLPRLPEE----WSQWLS---HSGWPGYVRPLXXXXXXXXXX 353
DPFRD P SRL D FG+ P++ W W S WPG +R
Sbjct: 19 DPFRD-SPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSAWPGTLRS---------GM 68
Query: 354 XXXXXYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEER 533
S + G S + W+V ++V+ F PEEL VKTKDG VE++GKHEE+
Sbjct: 69 VPRGPTSMARFGVPAEGRSPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVEVSGKHEEK 128
Query: 534 QDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE 686
Q E G +S+ FT+K LP VDP V +SLSPEG L +EAP P + E
Sbjct: 129 QQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAPQVPPYSPFGE 179
>ref|XP_003355906.1| PREDICTED: hypothetical protein LOC494560 [Sus scrofa].
Length = 163
Score = 98.2 bits (243), Expect = 6e-21
Identities = 60/157 (38%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Frame = +3
Query: 219 AHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQLS 398
A RLFDQ FG L E + + P Y+R + ++
Sbjct: 24 APGRLFDQRFGEGLLEAELAALCPATLAPYYLR----------------------APSVA 61
Query: 399 SGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKY 578
+++ + V LDV HF+PEE+ VK VE+ +HEER DEHG+I+R F R+Y
Sbjct: 62 LPTAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGYIAREFHRRY 121
Query: 579 TLPPGVDPTQVSSSLSPEGTLSVEA-------PLPKP 668
LPPGVDP V+S+LSPEG LS++A PLP P
Sbjct: 122 RLPPGVDPAAVTSALSPEGVLSIQAAPAPAQGPLPSP 158
>ref|XP_003127107.1| PREDICTED: hypothetical protein LOC494560 [Sus scrofa].
Length = 163
Score = 98.2 bits (243), Expect = 6e-21
Identities = 60/157 (38%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Frame = +3
Query: 219 AHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQLS 398
A RLFDQ FG L E + + P Y+R + ++
Sbjct: 24 APGRLFDQRFGEGLLEAELAALCPATLAPYYLR----------------------APSVA 61
Query: 399 SGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKY 578
+++ + V LDV HF+PEE+ VK VE+ +HEER DEHG+I+R F R+Y
Sbjct: 62 LPTAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGYIAREFHRRY 121
Query: 579 TLPPGVDPTQVSSSLSPEGTLSVEA-------PLPKP 668
LPPGVDP V+S+LSPEG LS++A PLP P
Sbjct: 122 RLPPGVDPAAVTSALSPEGVLSIQAAPAPAQGPLPSP 158
>ref|XP_003355923.1| PREDICTED: heat shock protein beta-6-like [Sus scrofa].
Length = 99
Score = 95.5 bits (236), Expect = 4e-20
Identities = 47/83 (56%), Positives = 58/83 (69%), Gaps = 7/83 (8%)
Frame = +3
Query: 441 VSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSS 620
V LDV HF+PEE+ VK VE+ +HEER DEHG+I+R F R+Y LPPGVDP V+S+
Sbjct: 12 VLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGYIAREFHRRYRLPPGVDPAAVTSA 71
Query: 621 LSPEGTLSVEA-------PLPKP 668
LSPEG LS++A PLP P
Sbjct: 72 LSPEGVLSIQAAPAPAQGPLPSP 94
>ref|XP_003127108.1| PREDICTED: hypothetical protein LOC494560 [Sus scrofa].
Length = 156
Score = 95.5 bits (236), Expect = 4e-20
Identities = 47/83 (56%), Positives = 58/83 (69%), Gaps = 7/83 (8%)
Frame = +3
Query: 441 VSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSS 620
V LDV HF+PEE+ VK VE+ +HEER DEHG+I+R F R+Y LPPGVDP V+S+
Sbjct: 69 VLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGYIAREFHRRYRLPPGVDPAAVTSA 128
Query: 621 LSPEGTLSVEA-------PLPKP 668
LSPEG LS++A PLP P
Sbjct: 129 LSPEGVLSIQAAPAPAQGPLPSP 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,037,924
Number of extensions: 518625
Number of successful extensions: 2448
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2438
Number of HSP's successfully gapped: 15
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012219
(967 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038588.2| heat shock protein beta-1 [Mus musculus]. 350 7e-97
Alignment gi|NP_034094.1| alpha-crystallin B chain [Mus musculus]. 117 1e-26
Alignment gi|NP_109629.1| heat shock protein beta-8 [Mus musculus]. 112 4e-25
Alignment gi|NP_001012401.1| heat shock protein beta-6 [Mus musculus]. 103 2e-22
Alignment gi|NP_077761.3| heat shock protein beta-2 isoform 1 [Mus muscul... 95 9e-20
Alignment gi|NP_038529.1| alpha-crystallin A chain [Mus musculus]. 92 6e-19
Alignment gi|NP_064344.1| heat shock protein beta-3 [Mus musculus]. 70 2e-12
>ref|NP_038588.2| heat shock protein beta-1 [Mus musculus].
Length = 209
Score = 350 bits (899), Expect = 7e-97
Identities = 171/209 (81%), Positives = 183/209 (87%), Gaps = 2/209 (0%)
Frame = +3
Query: 147 MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLX 326
MTERRVPFSLLRSPSW+PFRDWYPAHSRLFDQAFG+PRLP+EWSQW S +GWPGYVRPL
Sbjct: 1 MTERRVPFSLLRSPSWEPFRDWYPAHSRLFDQAFGVPRLPDEWSQWFSAAGWPGYVRPLP 60
Query: 327 XXXXXXXXXXXXXX--YSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDG 500
+SR L+RQLSSGVSEI+QTADRWRVSLDVNHFAPEELTVKTK+G
Sbjct: 61 AATAEGPAAVTLAAPAFSRALNRQLSSGVSEIRQTADRWRVSLDVNHFAPEELTVKTKEG 120
Query: 501 VVEITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQS 680
VVEITGKHEERQDEHG+ISRCFTRKYTLPPGVDPT VSSSLSPEGTL+VEAPLPK TQS
Sbjct: 121 VVEITGKHEERQDEHGYISRCFTRKYTLPPGVDPTLVSSSLSPEGTLTVEAPLPKAVTQS 180
Query: 681 AEITIPVTFEARAQLGGTEAGKSEKPGTK 767
AEITIPVTFEARAQ+GG EAGKSE+ G K
Sbjct: 181 AEITIPVTFEARAQIGGPEAGKSEQSGAK 209
>ref|NP_034094.1| alpha-crystallin B chain [Mus musculus].
Length = 175
Score = 117 bits (294), Expect = 1e-26
Identities = 77/174 (44%), Positives = 101/174 (58%), Gaps = 3/174 (1%)
Frame = +3
Query: 204 RDWYPAHS--RLFDQAFGLPRLPEE-WSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYS 374
R ++P HS RLFDQ FG L + +S S S P Y+RP +
Sbjct: 12 RPFFPFHSPSRLFDQFFGEHLLESDLFSTATSLS--PFYLRP--------------PSFL 55
Query: 375 RLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFI 554
R S + +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFI
Sbjct: 56 RAPS-WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFI 114
Query: 555 SRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 716
SR F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 115 SREFHRKYRIPADVDPLTITSSLSSDGVLTVNG--PRKQVSGPERTIPITREEK 166
>ref|NP_109629.1| heat shock protein beta-8 [Mus musculus].
Length = 196
Score = 112 bits (280), Expect = 4e-25
Identities = 68/171 (39%), Positives = 88/171 (51%), Gaps = 7/171 (4%)
Frame = +3
Query: 195 DPFRDWYPAHSRLFDQAFGLPRLPEE----WSQWLS---HSGWPGYVRPLXXXXXXXXXX 353
DPFRD P SRL D FG+ P++ W +W S WPG +R
Sbjct: 19 DPFRD-SPLSSRLLDDGFGMDPFPDDLTAPWPEWALPRLSSAWPGTLRSGMVPRGPPATA 77
Query: 354 XXXXXYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEER 533
+ G S + W+V ++V+ F PEEL VKTKDG VE++GKHEE+
Sbjct: 78 RFGVP---------AEGRSPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVEVSGKHEEK 128
Query: 534 QDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE 686
Q E G +S+ FT+K LP VDP V +SLSPEG L +EAP P + E
Sbjct: 129 QQEGGIVSKNFTKKIQLPAEVDPATVFASLSPEGLLIIEAPQVPPYSPFGE 179
>ref|NP_001012401.1| heat shock protein beta-6 [Mus musculus].
Length = 162
Score = 103 bits (258), Expect = 2e-22
Identities = 62/162 (38%), Positives = 87/162 (53%)
Frame = +3
Query: 213 YPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQ 392
+ A RLFDQ FG L E + + P Y+R +
Sbjct: 22 FSAPGRLFDQRFGEGLLEAELASLCPAAIAPYYLR----------------------APS 59
Query: 393 LSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTR 572
++ +++ + + V LDV HF PEE++VK D VE+ +HEER DEHGFI+R F R
Sbjct: 60 VALPTAQVSTDSGYFSVLLDVKHFLPEEISVKVVDDHVEVHARHEERPDEHGFIAREFHR 119
Query: 573 KYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIP 698
+Y LPPGVDP V+S+LSPEG LS++A PA+ A++ P
Sbjct: 120 RYRLPPGVDPAAVTSALSPEGVLSIQA---TPASAQAQLPSP 158
>ref|NP_077761.3| heat shock protein beta-2 isoform 1 [Mus musculus].
Length = 182
Score = 94.7 bits (234), Expect = 9e-20
Identities = 54/144 (37%), Positives = 82/144 (56%)
Frame = +3
Query: 225 SRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQLSSG 404
SRL +Q FG LPEE + G+ YVRP + +G
Sbjct: 22 SRLGEQRFGEGLLPEEILTPTLYHGY--YVRPR----------------AARAGEGARAG 63
Query: 405 VSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTL 584
SE++ + +++ LDV+HF P+E+TV+T D ++E++ +H +R D HGF+SR F R Y L
Sbjct: 64 ASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVL 123
Query: 585 PPGVDPTQVSSSLSPEGTLSVEAP 656
P VDP +V ++LS +G L++EAP
Sbjct: 124 PADVDPWRVRAALSHDGILNLEAP 147
>ref|NP_038529.1| alpha-crystallin A chain [Mus musculus].
Length = 196
Score = 92.0 bits (227), Expect = 6e-19
Identities = 63/176 (35%), Positives = 91/176 (51%), Gaps = 7/176 (3%)
Frame = +3
Query: 210 WYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSR 389
+YP SRLFDQ FG + +LS + P Y R + +
Sbjct: 17 FYP--SRLFDQFFGEGLFEYDLLPFLSSTISP-YYRQSLFRTVLDSGISELMTHMWFVMH 73
Query: 390 QLSSGVSE-----IQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFI 554
Q +G + ++ D++ + LDV HF+PE+LTVK + VEI GKH ERQD+HG+I
Sbjct: 74 QPHAGNPKNNPVKVRSDRDKFVIFLDVKHFSPEDLTVKVLEDFVEIHGKHNERQDDHGYI 133
Query: 555 SRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQS--AEITIPVTFEAR 716
SR F R+Y LP VD + +S SLS +G L+ P + + +E IPV+ E +
Sbjct: 134 SREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKVQSGLDAGHSERAIPVSREEK 189
>ref|NP_064344.1| heat shock protein beta-3 [Mus musculus].
Length = 154
Score = 70.5 bits (171), Expect = 2e-12
Identities = 34/73 (46%), Positives = 49/73 (67%)
Frame = +3
Query: 432 RWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQV 611
R+++ LDV F PE++ ++T +G + I +H R DEHGFISR FTR+Y LP GV+ +
Sbjct: 74 RFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVETKDL 133
Query: 612 SSSLSPEGTLSVE 650
S+ L +G L VE
Sbjct: 134 SAILCHDGILVVE 146
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,761,021
Number of extensions: 602287
Number of successful extensions: 2879
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2866
Number of HSP's successfully gapped: 8
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012219
(967 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001531.1| heat shock protein beta-1 [Homo sapiens]. 342 4e-94
Alignment gi|NP_001876.1| alpha-crystallin B chain [Homo sapiens]. 117 2e-26
Alignment gi|NP_055180.1| heat shock protein beta-8 [Homo sapiens]. 111 9e-25
Alignment gi|NP_000385.1| alpha-crystallin A chain [Homo sapiens]. 105 8e-23
Alignment gi|NP_653218.1| heat shock protein beta-6 [Homo sapiens]. 98 1e-20
Alignment gi|NP_001532.1| heat shock protein beta-2 [Homo sapiens]. 94 2e-19
Alignment gi|NP_006299.1| heat shock protein beta-3 [Homo sapiens]. 69 8e-12
>ref|NP_001531.1| heat shock protein beta-1 [Homo sapiens].
Length = 205
Score = 342 bits (876), Expect = 4e-94
Identities = 170/207 (82%), Positives = 178/207 (85%)
Frame = +3
Query: 147 MTERRVPFSLLRSPSWDPFRDWYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLX 326
MTERRVPFSLLR PSWDPFRDWYP HSRLFDQAFGLPRLPEEWSQWL S WPGYVRPL
Sbjct: 1 MTERRVPFSLLRGPSWDPFRDWYP-HSRLFDQAFGLPRLPEEWSQWLGGSSWPGYVRPLP 59
Query: 327 XXXXXXXXXXXXXXYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVV 506
YSR LSRQLSSGVSEI+ TADRWRVSLDVNHFAP+ELTVKTKDGVV
Sbjct: 60 PAAIESPAVAAPA-YSRALSRQLSSGVSEIRHTADRWRVSLDVNHFAPDELTVKTKDGVV 118
Query: 507 EITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAE 686
EITGKHEERQDEHG+ISRCFTRKYTLPPGVDPTQVSSSLSPEGTL+VEAP+PK ATQS E
Sbjct: 119 EITGKHEERQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMPKLATQSNE 178
Query: 687 ITIPVTFEARAQLGGTEAGKSEKPGTK 767
ITIPVTFE+RAQLGG EA KS++ K
Sbjct: 179 ITIPVTFESRAQLGGPEAAKSDETAAK 205
>ref|NP_001876.1| alpha-crystallin B chain [Homo sapiens].
Length = 175
Score = 117 bits (293), Expect = 2e-26
Identities = 76/173 (43%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Frame = +3
Query: 204 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSR 377
R ++P HS RLFDQ FG L + S S P Y+RP + R
Sbjct: 12 RPFFPFHSPSRLFDQFFGEHLLESDLFP-TSTSLSPFYLRP--------------PSFLR 56
Query: 378 LLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFIS 557
S +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFIS
Sbjct: 57 APS-WFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 115
Query: 558 RCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 716
R F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 116 REFHRKYRIPADVDPLTITSSLSSDGVLTVNG--PRKQVSGPERTIPITREEK 166
>ref|NP_055180.1| heat shock protein beta-8 [Homo sapiens].
Length = 196
Score = 111 bits (278), Expect = 9e-25
Identities = 73/190 (38%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Frame = +3
Query: 147 MTERRVPFSLLRSPSW---DPFRDWYPAHSRLFDQAFGLPRLPEE----WSQWLS---HS 296
M + ++PFS PS DPFRD P SRL D FG+ P++ W W S
Sbjct: 1 MADGQMPFSC-HYPSRLRRDPFRD-SPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSS 58
Query: 297 GWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEE 476
WPG +R + G + + W+V ++V+ F PEE
Sbjct: 59 AWPGTLRSGMVPRGPTATARFGVP---------AEGRTPPPFPGEPWKVCVNVHSFKPEE 109
Query: 477 LTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAP 656
L VKTKDG VE++GKHEE+Q E G +S+ FT+K LP VDP V +SLSPEG L +EAP
Sbjct: 110 LMVKTKDGYVEVSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAP 169
Query: 657 LPKPATQSAE 686
P + E
Sbjct: 170 QVPPYSTFGE 179
>ref|NP_000385.1| alpha-crystallin A chain [Homo sapiens].
Length = 173
Score = 105 bits (261), Expect = 8e-23
Identities = 68/171 (39%), Positives = 93/171 (54%), Gaps = 2/171 (1%)
Frame = +3
Query: 210 WYPAHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSR 389
+YP SRLFDQ FG + +LS + P Y + L
Sbjct: 17 FYP--SRLFDQFFGEGLFEYDLLPFLSSTISPYYRQSLFRTV------------------ 56
Query: 390 QLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFT 569
L SG+SE++ D++ + LDV HF+PE+LTVK +D VEI GKH ERQD+HG+ISR F
Sbjct: 57 -LDSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFH 115
Query: 570 RKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQS--AEITIPVTFEAR 716
R+Y LP VD + +S SLS +G L+ P + + AE IPV+ E +
Sbjct: 116 RRYRLPSNVDQSALSCSLSADGMLTFCGPKIQTGLDATHAERAIPVSREEK 166
>ref|NP_653218.1| heat shock protein beta-6 [Homo sapiens].
Length = 160
Score = 97.8 bits (242), Expect = 1e-20
Identities = 57/145 (39%), Positives = 78/145 (53%)
Frame = +3
Query: 219 AHSRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQLS 398
A RLFDQ FG L E + + P Y+R + ++
Sbjct: 24 APGRLFDQRFGEGLLEAELAALCPTTLAPYYLR----------------------APSVA 61
Query: 399 SGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKY 578
V+++ + V LDV HF+PEE+ VK VE+ +HEER DEHGF++R F R+Y
Sbjct: 62 LPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRY 121
Query: 579 TLPPGVDPTQVSSSLSPEGTLSVEA 653
LPPGVDP V+S+LSPEG LS++A
Sbjct: 122 RLPPGVDPAAVTSALSPEGVLSIQA 146
>ref|NP_001532.1| heat shock protein beta-2 [Homo sapiens].
Length = 182
Score = 94.0 bits (232), Expect = 2e-19
Identities = 54/144 (37%), Positives = 81/144 (56%)
Frame = +3
Query: 225 SRLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLXXXXXXXXXXXXXXXYSRLLSRQLSSG 404
SRL +Q FG LPEE + G+ YVRP +G
Sbjct: 22 SRLGEQRFGEGLLPEEILTPTLYHGY--YVRPRAAPAGEGSR----------------AG 63
Query: 405 VSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTL 584
SE++ + +++ LDV+HF P+E+TV+T D ++E++ +H +R D HGF+SR F R Y L
Sbjct: 64 ASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVL 123
Query: 585 PPGVDPTQVSSSLSPEGTLSVEAP 656
P VDP +V ++LS +G L++EAP
Sbjct: 124 PADVDPWRVRAALSHDGILNLEAP 147
>ref|NP_006299.1| heat shock protein beta-3 [Homo sapiens].
Length = 150
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = +3
Query: 435 WRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFISRCFTRKYTLPPGVDPTQVS 614
+++ LDV F PE++ ++T +G + I +H R DEHGFISR FTR+Y LP GV+ +S
Sbjct: 71 FQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVEIKDLS 130
Query: 615 SSLSPEGTLSVEAPLP 662
+ L +G L VE P
Sbjct: 131 AVLCHDGILVVEVKDP 146
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,501,683
Number of extensions: 730373
Number of successful extensions: 3582
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3571
Number of HSP's successfully gapped: 8
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012219
(967 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 630 e-178
Sscrofa_Chr09 242 3e-61
>Sscrofa_Chr03
|| Length = 144787322
Score = 630 bits (318), Expect = e-178
Identities = 318/318 (100%)
Strand = Plus / Minus
Query: 581 gctgccccccggtgtggaccccacccaggtctcctcctccctgtcccctgagggcacgct 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9926180 gctgccccccggtgtggaccccacccaggtctcctcctccctgtcccctgagggcacgct 9926121
Query: 641 cagcgtggaggccccgctgcccaagccagccacccagtcggcagagatcaccatccctgt 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9926120 cagcgtggaggccccgctgcccaagccagccacccagtcggcagagatcaccatccctgt 9926061
Query: 701 cactttcgaggcgcgggcccagcttgggggcacagaagctggaaagtcggaaaagcccgg 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9926060 cactttcgaggcgcgggcccagcttgggggcacagaagctggaaagtcggaaaagcccgg 9926001
Query: 761 aaccaagtaaaggccttcgccctgctgctcaccgccccccgcccaaacccgcaccagcca 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9926000 aaccaagtaaaggccttcgccctgctgctcaccgccccccgcccaaacccgcaccagcca 9925941
Query: 821 tccccacctgccaactctctgtgctcttttgatacgtctaccttctgtttttctcgaata 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9925940 tccccacctgccaactctctgtgctcttttgatacgtctaccttctgtttttctcgaata 9925881
Query: 881 aagttcaaagcaactgcc 898
||||||||||||||||||
Sbjct: 9925880 aagttcaaagcaactgcc 9925863
Score = 630 bits (318), Expect = e-178
Identities = 318/318 (100%)
Strand = Plus / Minus
Query: 581 gctgccccccggtgtggaccccacccaggtctcctcctccctgtcccctgagggcacgct 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10049606 gctgccccccggtgtggaccccacccaggtctcctcctccctgtcccctgagggcacgct 10049547
Query: 641 cagcgtggaggccccgctgcccaagccagccacccagtcggcagagatcaccatccctgt 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10049546 cagcgtggaggccccgctgcccaagccagccacccagtcggcagagatcaccatccctgt 10049487
Query: 701 cactttcgaggcgcgggcccagcttgggggcacagaagctggaaagtcggaaaagcccgg 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10049486 cactttcgaggcgcgggcccagcttgggggcacagaagctggaaagtcggaaaagcccgg 10049427
Query: 761 aaccaagtaaaggccttcgccctgctgctcaccgccccccgcccaaacccgcaccagcca 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10049426 aaccaagtaaaggccttcgccctgctgctcaccgccccccgcccaaacccgcaccagcca 10049367
Query: 821 tccccacctgccaactctctgtgctcttttgatacgtctaccttctgtttttctcgaata 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10049366 tccccacctgccaactctctgtgctcttttgatacgtctaccttctgtttttctcgaata 10049307
Query: 881 aagttcaaagcaactgcc 898
||||||||||||||||||
Sbjct: 10049306 aagttcaaagcaactgcc 10049289
Score = 613 bits (309), Expect = e-173
Identities = 312/313 (99%)
Strand = Plus / Minus
Query: 2 agtcattgccattaatagagacctgaaacaccgcctgctaaaaatacccggctggcccat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9927504 agtcattgccattaatagagacctgaaacaccgcctgctaaaaatacccggctggcccat 9927445
Query: 62 tataaaagcgctgcgggctcggcccaccgagactaactccccttctcccagccgcagccg 121
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9927444 tataaaagcgctgcgggctcggcccaccgacactaactccccttctcccagccgcagccg 9927385
Query: 122 gacgcgtccagccagcgcagccagcatgactgagcgccgtgtgcctttctcgctcctgcg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9927384 gacgcgtccagccagcgcagccagcatgactgagcgccgtgtgcctttctcgctcctgcg 9927325
Query: 182 gagccccagctgggaccctttccgcgactggtacccggcccacagccgcctcttcgacca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9927324 gagccccagctgggaccctttccgcgactggtacccggcccacagccgcctcttcgacca 9927265
Query: 242 ggccttcgggctgccccggctgcccgaggagtggtcgcagtggctgagccacagcggctg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9927264 ggccttcgggctgccccggctgcccgaggagtggtcgcagtggctgagccacagcggctg 9927205
Query: 302 gccgggctacgtg 314
|||||||||||||
Sbjct: 9927204 gccgggctacgtg 9927192
Score = 613 bits (309), Expect = e-173
Identities = 312/313 (99%)
Strand = Plus / Minus
Query: 2 agtcattgccattaatagagacctgaaacaccgcctgctaaaaatacccggctggcccat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10050930 agtcattgccattaatagagacctgaaacaccgcctgctaaaaatacccggctggcccat 10050871
Query: 62 tataaaagcgctgcgggctcggcccaccgagactaactccccttctcccagccgcagccg 121
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 10050870 tataaaagcgctgcgggctcggcccaccgacactaactccccttctcccagccgcagccg 10050811
Query: 122 gacgcgtccagccagcgcagccagcatgactgagcgccgtgtgcctttctcgctcctgcg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10050810 gacgcgtccagccagcgcagccagcatgactgagcgccgtgtgcctttctcgctcctgcg 10050751
Query: 182 gagccccagctgggaccctttccgcgactggtacccggcccacagccgcctcttcgacca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10050750 gagccccagctgggaccctttccgcgactggtacccggcccacagccgcctcttcgacca 10050691
Query: 242 ggccttcgggctgccccggctgcccgaggagtggtcgcagtggctgagccacagcggctg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10050690 ggccttcgggctgccccggctgcccgaggagtggtcgcagtggctgagccacagcggctg 10050631
Query: 302 gccgggctacgtg 314
|||||||||||||
Sbjct: 10050630 gccgggctacgtg 10050618
Score = 268 bits (135), Expect = 5e-69
Identities = 138/139 (99%)
Strand = Plus / Minus
Query: 379 tgctcagcaggcagctcagcagcggcgtctcggagatccagcagaccgccgaccgctggc 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9927127 tgctcagcaggcagctcagcagcggcgtctcggagatccagcagactgccgaccgctggc 9927068
Query: 439 gcgtctccctggacgtcaaccacttcgcccccgaggagctgacggtcaagaccaaggacg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9927067 gcgtctccctggacgtcaaccacttcgcccccgaggagctgacggtcaagaccaaggacg 9927008
Query: 499 gcgtggtggagatcacggg 517
|||||||||||||||||||
Sbjct: 9927007 gcgtggtggagatcacggg 9926989
Score = 268 bits (135), Expect = 5e-69
Identities = 138/139 (99%)
Strand = Plus / Minus
Query: 379 tgctcagcaggcagctcagcagcggcgtctcggagatccagcagaccgccgaccgctggc 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10050553 tgctcagcaggcagctcagcagcggcgtctcggagatccagcagactgccgaccgctggc 10050494
Query: 439 gcgtctccctggacgtcaaccacttcgcccccgaggagctgacggtcaagaccaaggacg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10050493 gcgtctccctggacgtcaaccacttcgcccccgaggagctgacggtcaagaccaaggacg 10050434
Query: 499 gcgtggtggagatcacggg 517
|||||||||||||||||||
Sbjct: 10050433 gcgtggtggagatcacggg 10050415
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 516 ggcaagcacgaggagcggcaggatgagcacggcttcatttcccggtgtttcactcgaaaa 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9926332 ggcaagcacgaggagcggcaggatgagcacggcttcatttcccggtgtttcactcgaaaa 9926273
Query: 576 tacacg 581
||||||
Sbjct: 9926272 tacacg 9926267
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 516 ggcaagcacgaggagcggcaggatgagcacggcttcatttcccggtgtttcactcgaaaa 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10049758 ggcaagcacgaggagcggcaggatgagcacggcttcatttcccggtgtttcactcgaaaa 10049699
Query: 576 tacacg 581
||||||
Sbjct: 10049698 tacacg 10049693
>Sscrofa_Chr09
|| Length = 153670197
Score = 242 bits (122), Expect = 3e-61
Identities = 140/146 (95%)
Strand = Plus / Plus
Query: 469 ccgaggagctgacggtcaagaccaaggacggcgtggtggagatcacgggcaagcacgagg 528
||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 26842316 ccgaggagctgacagtcaagactaaggacggcgtggtggagatcacgcgcaagcacgagg 26842375
Query: 529 agcggcaggatgagcacggcttcatttcccggtgtttcactcgaaaatacacgctgcccc 588
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26842376 ggctgcaggatgagcacggcttcatttcccggtgtttcactcgaaaatacacgctgcccc 26842435
Query: 589 ccggtgtggaccccacccaggtctcc 614
|||||||||||||||||||||||||
Sbjct: 26842436 tcggtgtggaccccacccaggtctcc 26842461
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,156,317
Number of extensions: 145
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 9
Length of query: 967
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 946
Effective length of database: 2,808,413,156
Effective search space: 2656758845576
Effective search space used: 2656758845576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)