Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012221
(1657 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851374.1| serine/threonine-protein phosphatase 2A catalyt... 653 0.0
Alignment gi|NP_001069325.1| serine/threonine-protein phosphatase 2A cata... 641 0.0
Alignment gi|NP_001092578.1| serine/threonine-protein phosphatase 4 catal... 438 e-123
Alignment gi|NP_001124222.1| serine/threonine-protein phosphatase 6 catal... 372 e-103
Alignment gi|NP_777006.1| serine/threonine-protein phosphatase PP1-gamma ... 297 2e-80
Alignment gi|XP_002683644.1| PREDICTED: protein phosphatase 1, catalytic ... 296 5e-80
Alignment gi|NP_001030393.1| serine/threonine-protein phosphatase PP1-alp... 295 1e-79
Alignment gi|NP_001029825.1| serine/threonine-protein phosphatase PP1-bet... 287 2e-77
Alignment gi|XP_002683645.1| PREDICTED: protein phosphatase 1, catalytic ... 273 3e-73
Alignment gi|NP_001179178.1| serine/threonine-protein phosphatase 5 [Bos ... 230 3e-60
>ref|NP_851374.1| serine/threonine-protein phosphatase 2A catalytic subunit alpha
isoform [Bos taurus].
Length = 309
Score = 653 bits (1684), Expect = 0.0
Identities = 309/309 (100%), Positives = 309/309 (100%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 180
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 181 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 240
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 241 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 300
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 301 TRRTPDYFL 309
>ref|NP_001069325.1| serine/threonine-protein phosphatase 2A catalytic subunit beta
isoform [Bos taurus].
Length = 309
Score = 641 bits (1654), Expect = 0.0
Identities = 300/309 (97%), Positives = 307/309 (99%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MD+K FTK+LDQW+EQLNECKQL+E+QV++LCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDDKAFTKDLDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY ERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 180
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 181 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 240
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 241 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 300
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 301 TRRTPDYFL 309
>ref|NP_001092578.1| serine/threonine-protein phosphatase 4 catalytic subunit [Bos
taurus].
Length = 307
Score = 438 bits (1127), Expect = e-123
Identities = 202/303 (66%), Positives = 248/303 (81%), Gaps = 2/303 (0%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+ IEQL C+ + ES+VK+LC KA+EIL +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKEL 65
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR+GG P+TNYLFMGD+VDRG+YSVET LL+ALKVRY +RIT++RGNHESRQITQVYG
Sbjct: 66 FRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 125
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDECLRKYG+ VW+Y T++FDYL L+A++DG+IFC+HGGLSPSI TLD IR +DR QE
Sbjct: 126 FYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQE 185
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
VPH+GPMCDLLWSDP+D GWG+SPRGAGY FG D+ FN AN + ++ RAHQLVMEGY
Sbjct: 186 VPHDGPMCDLLWSDPEDTTGWGVSPRGAGYLFGSDVVAQFNAANDIDMICRAHQLVMEGY 245
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR--RGEPHVTRRTPD 1301
W + V+T++SAPNYCYRCGN AAI+ELD+ L+ F+ F+ AP+ RG P + D
Sbjct: 246 KWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKDFIIFEAAPQETRGIPS-KKPVAD 304
Query: 1302 YFL 1310
YFL
Sbjct: 305 YFL 307
>ref|NP_001124222.1| serine/threonine-protein phosphatase 6 catalytic subunit [Bos
taurus].
Length = 305
Score = 372 bits (955), Expect = e-103
Identities = 175/301 (58%), Positives = 216/301 (71%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+++E CK L E+ +K LC+ ++L +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 5 DLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCEL 64
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR GG+ PDTNY+FMGD+VDRGYYS+ET T L+ALK ++ +RIT+LRGNHESRQITQVYG
Sbjct: 65 FRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYG 124
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDEC KYGNAN W+Y T +FD L + AL+D QI C+HGGLSP I TLD IR ++R QE
Sbjct: 125 FYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQE 184
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
+PH+G CDL+WSDP+D W ISPRGAG+ FG ++ F H N L L+ RAHQLV EGY
Sbjct: 185 IPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGY 244
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYF 1307
+ D +VT++SAPNYCYRCGN A+IM D F P R T YF
Sbjct: 245 KFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYF 304
Query: 1308 L 1310
L
Sbjct: 305 L 305
>ref|NP_777006.1| serine/threonine-protein phosphatase PP1-gamma catalytic subunit [Bos
taurus].
Length = 323
Score = 297 bits (760), Expect = 2e-80
Identities = 138/282 (48%), Positives = 196/282 (69%), Gaps = 1/282 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
QL E++++ LC K++EI + + E+ P+ +CGD+HGQ++DL+ LF GG P++NYL
Sbjct: 29 QLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 88
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N
Sbjct: 89 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIK 147
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWS
Sbjct: 148 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG ++ F H + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 208 DPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLF 267
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTR 1289
SAPNYC N A+M +D+TL SF PA ++ +P+ TR
Sbjct: 268 SAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK-KPNATR 308
>ref|XP_002683644.1| PREDICTED: protein phosphatase 1, catalytic subunit, alpha-like
isoform 1 [Bos taurus].
Length = 330
Score = 296 bits (757), Expect = 5e-80
Identities = 136/274 (49%), Positives = 191/274 (69%), Gaps = 1/274 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
QL+E++++ LC K++EI + + E+ P+ +CGD+HGQ++DL+ LF GG P++NYL
Sbjct: 29 QLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 88
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K+RY E +LRGNHE I ++YGFYDEC R+Y N
Sbjct: 89 FLGDYVDRGKQSLETICLLLAYKIRYPENFFLLRGNHECASINRIYGFYDECKRRY-NIK 147
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWS
Sbjct: 148 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG ++ F H + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 208 DPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLF 267
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR 1265
SAPNYC N A+M +D+TL SF PA +
Sbjct: 268 SAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301
>ref|NP_001030393.1| serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Bos
taurus].
Length = 330
Score = 295 bits (754), Expect = 1e-79
Identities = 135/274 (49%), Positives = 191/274 (69%), Gaps = 1/274 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
QL+E++++ LC K++EI + + E+ P+ +CGD+HGQ++DL+ LF GG P++NYL
Sbjct: 29 QLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 88
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N
Sbjct: 89 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIK 147
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWS
Sbjct: 148 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG ++ F H + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 208 DPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLF 267
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR 1265
SAPNYC N A+M +D+TL SF PA +
Sbjct: 268 SAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301
>ref|NP_001029825.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Bos
taurus].
Length = 327
Score = 287 bits (735), Expect = 2e-77
Identities = 132/277 (47%), Positives = 189/277 (68%), Gaps = 1/277 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
Q++E++V+ LC K++EI + + E+ P+ +CGD+HGQ+ DL+ LF GG P+ NYL
Sbjct: 28 QMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYL 87
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R++ N
Sbjct: 88 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NIK 146
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP G +CDLLWS
Sbjct: 147 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWS 206
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG D+ F + + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 207 DPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLF 266
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGE 1274
SAPNYC N +M +D+TL SF P+ ++ +
Sbjct: 267 SAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAK 303
>ref|XP_002683645.1| PREDICTED: protein phosphatase 1, catalytic subunit, alpha-like
isoform 2 [Bos taurus].
Length = 288
Score = 273 bits (698), Expect = 3e-73
Identities = 126/242 (52%), Positives = 170/242 (70%), Gaps = 1/242 (0%)
Frame = +3
Query: 543 VCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITI 722
+CGD+HGQ++DL+ LF GG P++NYLF+GDYVDRG S+ET+ LL+A K+RY E +
Sbjct: 19 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIRYPENFFL 78
Query: 723 LRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPS 902
LRGNHE I ++YGFYDEC R+Y N +WK FTD F+ LP+ A+VD +IFC HGGLSP
Sbjct: 79 LRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPD 137
Query: 903 IDTLDHIRALDRLQEVPHEGPMCDLLWSDPD-DRGGWGISPRGAGYTFGQDISETFNHAN 1079
+ +++ IR + R +VP +G +CDLLWSDPD D GWG + RG +TFG ++ F H +
Sbjct: 138 LQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKH 197
Query: 1080 GLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPA 1259
L L+ RAHQ+V +GY + R +VT+FSAPNYC N A+M +D+TL SF PA
Sbjct: 198 DLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 257
Query: 1260 PR 1265
+
Sbjct: 258 DK 259
>ref|NP_001179178.1| serine/threonine-protein phosphatase 5 [Bos taurus].
Length = 499
Score = 230 bits (586), Expect = 3e-60
Identities = 121/295 (41%), Positives = 176/295 (59%), Gaps = 7/295 (2%)
Frame = +3
Query: 399 FTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQ 566
F KEL QW + + K+L + + KE+L+K S + E +TVCGD HGQ
Sbjct: 190 FMKELMQWYK---DQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQ 246
Query: 567 FHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
F+DL+ +F + G +TN Y+F GD+VDRG +SVE + L K+ Y + +LRGNHE+
Sbjct: 247 FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHET 306
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGL-SPSIDTLDH 920
+ Q+YGF E KY A +++ F+++F++LPL ++G++ +HGGL S TLD
Sbjct: 307 DNMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDD 365
Query: 921 IRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSR 1100
IR ++R ++ P GPMCDLLWSDP + G +S RG FG D+++ F N L + R
Sbjct: 366 IRKIERSRQPPDSGPMCDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENKLDYIIR 425
Query: 1101 AHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDT-LKYSFLQFDPAP 1262
+H++ EGY H VT+FSAPNYC + GN+AA + L L+ F QF P
Sbjct: 426 SHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKAAYIHLRGADLRPQFHQFTAVP 480
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,102,855
Number of extensions: 1415376
Number of successful extensions: 4364
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4314
Number of HSP's successfully gapped: 22
Length of query: 552
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 445
Effective length of database: 14,140,958
Effective search space: 6292726310
Effective search space used: 6292726310
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012221
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012221
(1657 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003063.1| serine/threonine-protein phosphatase 2A cata... 650 0.0
Alignment gi|XP_539988.1| PREDICTED: similar to Serine/threonine protein ... 642 0.0
Alignment gi|XP_858531.1| PREDICTED: similar to Serine/threonine protein ... 637 0.0
Alignment gi|XP_858573.1| PREDICTED: similar to Serine/threonine protein ... 592 e-169
Alignment gi|XP_858498.1| PREDICTED: similar to Serine/threonine protein ... 591 e-169
Alignment gi|XP_858464.1| PREDICTED: similar to Serine/threonine protein ... 536 e-152
Alignment gi|XP_547067.1| PREDICTED: similar to Serine/threonine protein ... 438 e-123
Alignment gi|XP_858953.1| PREDICTED: similar to Serine/threonine protein ... 427 e-119
Alignment gi|XP_858996.1| PREDICTED: similar to Serine/threonine protein ... 423 e-118
Alignment gi|XP_858914.1| PREDICTED: similar to Serine/threonine protein ... 409 e-114
>ref|NP_001003063.1| serine/threonine-protein phosphatase 2A catalytic subunit alpha
isoform [Canis lupus familiaris].
Length = 309
Score = 650 bits (1678), Expect = 0.0
Identities = 307/309 (99%), Positives = 309/309 (100%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MDEK+FTKELDQWIEQLNECKQLSESQVKSLCEKAKEILT+ESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDEKLFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTRESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 180
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 181 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 240
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 241 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 300
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 301 TRRTPDYFL 309
>ref|XP_539988.1| PREDICTED: similar to Serine/threonine protein phosphatase 2A,
catalytic subunit, beta isoform (PP2A-beta) isoform 1
[Canis familiaris].
Length = 309
Score = 642 bits (1657), Expect = 0.0
Identities = 301/309 (97%), Positives = 307/309 (99%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MD+K FTKELDQW+EQLNECKQL+E+QV++LCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY ERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 180
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 181 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 240
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 241 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 300
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 301 TRRTPDYFL 309
>ref|XP_858531.1| PREDICTED: similar to Serine/threonine protein phosphatase 2A,
catalytic subunit, beta isoform (PP2A-beta) isoform 4
[Canis familiaris].
Length = 311
Score = 637 bits (1644), Expect = 0.0
Identities = 301/311 (96%), Positives = 307/311 (98%), Gaps = 2/311 (0%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MD+K FTKELDQW+EQLNECKQL+E+QV++LCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY ERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQ--IFCLHGGLSPSIDTLD 917
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQ IFCLHGGLSPSIDTLD
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQPGIFCLHGGLSPSIDTLD 180
Query: 918 HIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVS 1097
HIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVS
Sbjct: 181 HIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVS 240
Query: 1098 RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEP 1277
RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEP
Sbjct: 241 RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEP 300
Query: 1278 HVTRRTPDYFL 1310
HVTRRTPDYFL
Sbjct: 301 HVTRRTPDYFL 311
>ref|XP_858573.1| PREDICTED: similar to Serine/threonine protein phosphatase 2A,
catalytic subunit, beta isoform (PP2A-beta) isoform 5
[Canis familiaris].
Length = 291
Score = 592 bits (1527), Expect = e-169
Identities = 283/309 (91%), Positives = 289/309 (93%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MD+K FTKELDQW+EQLNECKQL+E+QV++LCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIG YYSVETVTLLVALKVRY ERITILRGNHES
Sbjct: 61 QFHDLMELFRIG------------------YYSVETVTLLVALKVRYPERITILRGNHES 102
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 103 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 162
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 163 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 222
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 223 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 282
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 283 TRRTPDYFL 291
>ref|XP_858498.1| PREDICTED: similar to Serine/threonine protein phosphatase 2A,
catalytic subunit, beta isoform (PP2A-beta) isoform 3
[Canis familiaris].
Length = 292
Score = 591 bits (1524), Expect = e-169
Identities = 283/309 (91%), Positives = 289/309 (93%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MD+K FTKELDQW+EQLNECKQL+E+QV++LCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY ERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 180
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALD PDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 181 RALDH-----------------PDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 223
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 224 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 283
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 284 TRRTPDYFL 292
>ref|XP_858464.1| PREDICTED: similar to Serine/threonine protein phosphatase 2A,
catalytic subunit, beta isoform (PP2A-beta) isoform 2
[Canis familiaris].
Length = 274
Score = 536 bits (1382), Expect = e-152
Identities = 262/309 (84%), Positives = 270/309 (87%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MD+K FTKELDQW+EQLNECKQL+E+QV++LCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY ERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQ+
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQV----------------- 163
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
C L+ DDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 164 ---------------CIRLF---DDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 205
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 206 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 265
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 266 TRRTPDYFL 274
>ref|XP_547067.1| PREDICTED: similar to Serine/threonine protein phosphatase 4
catalytic subunit (PP4C) (Pp4) (Protein phosphatase X)
(PP-X) isoform 1 [Canis familiaris].
Length = 307
Score = 438 bits (1127), Expect = e-123
Identities = 202/303 (66%), Positives = 248/303 (81%), Gaps = 2/303 (0%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+ IEQL C+ + ES+VK+LC KA+EIL +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKEL 65
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR+GG P+TNYLFMGD+VDRG+YSVET LL+ALKVRY +RIT++RGNHESRQITQVYG
Sbjct: 66 FRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 125
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDECLRKYG+ VW+Y T++FDYL L+A++DG+IFC+HGGLSPSI TLD IR +DR QE
Sbjct: 126 FYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQE 185
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
VPH+GPMCDLLWSDP+D GWG+SPRGAGY FG D+ FN AN + ++ RAHQLVMEGY
Sbjct: 186 VPHDGPMCDLLWSDPEDTTGWGVSPRGAGYLFGSDVVAQFNAANDIDMICRAHQLVMEGY 245
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR--RGEPHVTRRTPD 1301
W + V+T++SAPNYCYRCGN AAI+ELD+ L+ F+ F+ AP+ RG P + D
Sbjct: 246 KWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKDFIIFEAAPQETRGIPS-KKPVAD 304
Query: 1302 YFL 1310
YFL
Sbjct: 305 YFL 307
>ref|XP_858953.1| PREDICTED: similar to Serine/threonine protein phosphatase 4
catalytic subunit (PP4C) (Pp4) (Protein phosphatase X)
(PP-X) isoform 4 [Canis familiaris].
Length = 324
Score = 427 bits (1099), Expect = e-119
Identities = 202/320 (63%), Positives = 248/320 (77%), Gaps = 19/320 (5%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+ IEQL C+ + ES+VK+LC KA+EIL +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKEL 65
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR+GG P+TNYLFMGD+VDRG+YSVET LL+ALKVRY +RIT++RGNHESRQITQVYG
Sbjct: 66 FRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 125
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDECLRKYG+ VW+Y T++FDYL L+A++DG+IFC+HGGLSPSI TLD IR +DR QE
Sbjct: 126 FYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQE 185
Query: 948 VPHEGPMCDLLWSDPD-----------------DRGGWGISPRGAGYTFGQDISETFNHA 1076
VPH+GPMCDLLWSDP+ D GWG+SPRGAGY FG D+ FN A
Sbjct: 186 VPHDGPMCDLLWSDPEEKPGGHPLPPSLPSFASDTTGWGVSPRGAGYLFGSDVVAQFNAA 245
Query: 1077 NGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDP 1256
N + ++ RAHQLVMEGY W + V+T++SAPNYCYRCGN AAI+ELD+ L+ F+ F+
Sbjct: 246 NDIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKDFIIFEA 305
Query: 1257 APR--RGEPHVTRRTPDYFL 1310
AP+ RG P + DYFL
Sbjct: 306 APQETRGIPS-KKPVADYFL 324
>ref|XP_858996.1| PREDICTED: similar to Serine/threonine protein phosphatase 4
catalytic subunit (PP4C) (Pp4) (Protein phosphatase X)
(PP-X) isoform 5 [Canis familiaris].
Length = 308
Score = 423 bits (1087), Expect = e-118
Identities = 197/304 (64%), Positives = 245/304 (80%), Gaps = 3/304 (0%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+ IEQL C+ + ES+VK+LC KA+EIL +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKEL 65
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR+GG P+TNYLFMGD+VDRG+YSVET LL+ALKVRY +RIT++RGNHESRQITQVYG
Sbjct: 66 FRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 125
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDECLRKYG+ VW+Y T++FDYL L+A++DG+IFC+HGGLSPSI TLD IR +DR QE
Sbjct: 126 FYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQE 185
Query: 948 VPHEGPMCDLLWSDPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEG 1124
VPH+GPMCDLLWSDP+ + + + PRGAGY FG D+ FN AN + ++ RAHQLVMEG
Sbjct: 186 VPHDGPMCDLLWSDPEGEENSFSLDPRGAGYLFGSDVVAQFNAANDIDMICRAHQLVMEG 245
Query: 1125 YNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR--RGEPHVTRRTP 1298
Y W + V+T++SAPNYCYRCGN AAI+ELD+ L+ F+ F+ AP+ RG P +
Sbjct: 246 YKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKDFIIFEAAPQETRGIPS-KKPVA 304
Query: 1299 DYFL 1310
DYFL
Sbjct: 305 DYFL 308
>ref|XP_858914.1| PREDICTED: similar to Serine/threonine protein phosphatase 4
catalytic subunit (PP4C) (Pp4) (Protein phosphatase X)
(PP-X) isoform 3 [Canis familiaris].
Length = 295
Score = 409 bits (1051), Expect = e-114
Identities = 193/303 (63%), Positives = 238/303 (78%), Gaps = 2/303 (0%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+ IEQL C+ + ES+VK+LC KA+EIL +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKEL 65
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR+GG P+TNYLFMGD+VDRG+YSVET LL+ALKVRY +RIT++RGNHESRQITQVYG
Sbjct: 66 FRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 125
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDECLRKYG+ VW+Y T++FDYL L+A++DG+IFC+HGGLSPSI TLD IR +DR QE
Sbjct: 126 FYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQE 185
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
VPH+GPMC WG+SPRGAGY FG D+ FN AN + ++ RAHQLVMEGY
Sbjct: 186 VPHDGPMC------------WGVSPRGAGYLFGSDVVAQFNAANDIDMICRAHQLVMEGY 233
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR--RGEPHVTRRTPD 1301
W + V+T++SAPNYCYRCGN AAI+ELD+ L+ F+ F+ AP+ RG P + D
Sbjct: 234 KWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKDFIIFEAAPQETRGIPS-KKPVAD 292
Query: 1302 YFL 1310
YFL
Sbjct: 293 YFL 295
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,676,694
Number of extensions: 1313223
Number of successful extensions: 4561
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 4495
Number of HSP's successfully gapped: 37
Length of query: 552
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 444
Effective length of database: 15,274,216
Effective search space: 6781751904
Effective search space used: 6781751904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012221
(1657 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999531.1| serine/threonine-protein phosphatase 2A catalyt... 653 0.0
Alignment gi|XP_003133430.1| PREDICTED: serine/threonine-protein phosphat... 582 e-166
Alignment gi|XP_001929230.1| PREDICTED: serine/threonine-protein phosphat... 372 e-103
Alignment gi|XP_003122208.1| PREDICTED: serine/threonine-protein phosphat... 356 2e-98
Alignment gi|XP_003122209.1| PREDICTED: serine/threonine-protein phosphat... 324 8e-89
Alignment gi|NP_001038025.1| protein phosphatase 1 catalytic subunit gamm... 297 1e-80
Alignment gi|NP_001038024.1| protein phosphatase 1 catalytic subunit alph... 295 7e-80
Alignment gi|NP_999349.1| serine/threonine-protein phosphatase PP1-beta c... 287 1e-77
Alignment gi|XP_003127282.2| PREDICTED: serine/threonine-protein phosphat... 230 2e-60
Alignment gi|NP_999293.1| serine/threonine-protein phosphatase 2B catalyt... 224 1e-58
>ref|NP_999531.1| serine/threonine-protein phosphatase 2A catalytic subunit alpha
isoform [Sus scrofa].
Length = 309
Score = 653 bits (1684), Expect = 0.0
Identities = 309/309 (100%), Positives = 309/309 (100%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 180
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 181 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 240
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 241 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 300
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 301 TRRTPDYFL 309
>ref|XP_003133430.1| PREDICTED: serine/threonine-protein phosphatase 2A catalytic subunit
alpha isoform [Sus scrofa].
Length = 287
Score = 582 bits (1499), Expect = e-166
Identities = 274/275 (99%), Positives = 274/275 (99%)
Frame = +3
Query: 486 AKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSV 665
AKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSV
Sbjct: 13 AKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSV 72
Query: 666 ETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLP 845
ETVTLLVALKVRY ERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLP
Sbjct: 73 ETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLP 132
Query: 846 LTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPR 1025
LTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPR
Sbjct: 133 LTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPR 192
Query: 1026 GAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAA 1205
GAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAA
Sbjct: 193 GAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAA 252
Query: 1206 IMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL 1310
IMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL
Sbjct: 253 IMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL 287
>ref|XP_001929230.1| PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit
isoform 1 [Sus scrofa].
Length = 305
Score = 372 bits (955), Expect = e-103
Identities = 175/301 (58%), Positives = 216/301 (71%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+++E CK L E+ +K LC+ ++L +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 5 DLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCEL 64
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR GG+ PDTNY+FMGD+VDRGYYS+ET T L+ALK ++ +RIT+LRGNHESRQITQVYG
Sbjct: 65 FRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYG 124
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDEC KYGNAN W+Y T +FD L + AL+D QI C+HGGLSP I TLD IR ++R QE
Sbjct: 125 FYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQE 184
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
+PH+G CDL+WSDP+D W ISPRGAG+ FG ++ F H N L L+ RAHQLV EGY
Sbjct: 185 IPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGY 244
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYF 1307
+ D +VT++SAPNYCYRCGN A+IM D F P R T YF
Sbjct: 245 KFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYF 304
Query: 1308 L 1310
L
Sbjct: 305 L 305
>ref|XP_003122208.1| PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit
isoform 2 [Sus scrofa].
Length = 350
Score = 356 bits (913), Expect = 2e-98
Identities = 167/282 (59%), Positives = 204/282 (72%)
Frame = +3
Query: 465 VKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYV 644
++ LC+ ++L +ESNVQ V PVTVCGD+HGQF+DL ELFR GG+ PDTNY+FMGD+V
Sbjct: 69 LQRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMGDFV 128
Query: 645 DRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFT 824
DRGYYS+ET T L+ALK ++ +RIT+LRGNHESRQITQVYGFYDEC KYGNAN W+Y T
Sbjct: 129 DRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTKYGNANAWRYCT 188
Query: 825 DLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRG 1004
+FD L + AL+D QI C+HGGLSP I TLD IR ++R QE+PH+G CDL+WSDP+D
Sbjct: 189 KVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVWSDPEDVD 248
Query: 1005 GWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCY 1184
W ISPRGAG+ FG ++ F H N L L+ RAHQLV EGY + D +VT++SAPNYCY
Sbjct: 249 TWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCY 308
Query: 1185 RCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL 1310
RCGN A+IM D F P R T YFL
Sbjct: 309 RCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYFL 350
>ref|XP_003122209.1| PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit
isoform 3 [Sus scrofa].
Length = 283
Score = 324 bits (831), Expect = 8e-89
Identities = 159/301 (52%), Positives = 197/301 (65%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+++E CK L E+ +K LC+ ++L +ESNVQ V PVTVCGD+HGQ
Sbjct: 5 DLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQ------- 57
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
GD+VDRGYYS+ET T L+ALK ++ +RIT+LRGNHESRQITQVYG
Sbjct: 58 ---------------GDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYG 102
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDEC KYGNAN W+Y T +FD L + AL+D QI C+HGGLSP I TLD IR ++R QE
Sbjct: 103 FYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQE 162
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
+PH+G CDL+WSDP+D W ISPRGAG+ FG ++ F H N L L+ RAHQLV EGY
Sbjct: 163 IPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGY 222
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYF 1307
+ D +VT++SAPNYCYRCGN A+IM D F P R T YF
Sbjct: 223 KFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYF 282
Query: 1308 L 1310
L
Sbjct: 283 L 283
>ref|NP_001038025.1| protein phosphatase 1 catalytic subunit gamma isoform [Sus scrofa].
Length = 323
Score = 297 bits (760), Expect = 1e-80
Identities = 138/282 (48%), Positives = 196/282 (69%), Gaps = 1/282 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
QL E++++ LC K++EI + + E+ P+ +CGD+HGQ++DL+ LF GG P++NYL
Sbjct: 29 QLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 88
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N
Sbjct: 89 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIK 147
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWS
Sbjct: 148 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG ++ F H + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 208 DPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLF 267
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTR 1289
SAPNYC N A+M +D+TL SF PA ++ +P+ TR
Sbjct: 268 SAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK-KPNATR 308
>ref|NP_001038024.1| protein phosphatase 1 catalytic subunit alpha isoform [Sus scrofa].
Length = 330
Score = 295 bits (754), Expect = 7e-80
Identities = 135/274 (49%), Positives = 191/274 (69%), Gaps = 1/274 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
QL+E++++ LC K++EI + + E+ P+ +CGD+HGQ++DL+ LF GG P++NYL
Sbjct: 29 QLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 88
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N
Sbjct: 89 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIK 147
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWS
Sbjct: 148 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG ++ F H + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 208 DPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLF 267
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR 1265
SAPNYC N A+M +D+TL SF PA +
Sbjct: 268 SAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301
>ref|NP_999349.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Sus
scrofa].
Length = 327
Score = 287 bits (735), Expect = 1e-77
Identities = 132/277 (47%), Positives = 189/277 (68%), Gaps = 1/277 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
Q++E++V+ LC K++EI + + E+ P+ +CGD+HGQ+ DL+ LF GG P+ NYL
Sbjct: 28 QMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYL 87
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R++ N
Sbjct: 88 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NIK 146
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP G +CDLLWS
Sbjct: 147 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWS 206
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG D+ F + + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 207 DPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLF 266
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGE 1274
SAPNYC N +M +D+TL SF P+ ++ +
Sbjct: 267 SAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAK 303
>ref|XP_003127282.2| PREDICTED: serine/threonine-protein phosphatase 5 [Sus scrofa].
Length = 449
Score = 230 bits (587), Expect = 2e-60
Identities = 121/295 (41%), Positives = 176/295 (59%), Gaps = 7/295 (2%)
Frame = +3
Query: 399 FTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQ 566
F KEL QW + + K+L + + KE+L+K S + E +TVCGD HGQ
Sbjct: 140 FMKELMQWYK---DQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQ 196
Query: 567 FHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
F+DL+ +F + G +TN Y+F GD+VDRG +SVE + L K+ Y + +LRGNHE+
Sbjct: 197 FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHET 256
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGL-SPSIDTLDH 920
+ Q+YGF E KY A +++ F+++F++LPL ++G++ +HGGL S TLD
Sbjct: 257 DNMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDD 315
Query: 921 IRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSR 1100
IR ++R ++ P GPMCDLLWSDP + G +S RG FG D+++ F N L + R
Sbjct: 316 IRKIERSRQPPDSGPMCDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENHLDYIIR 375
Query: 1101 AHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMEL-DDTLKYSFLQFDPAP 1262
+H++ EGY H VT+FSAPNYC + GN+AA + L L+ F QF P
Sbjct: 376 SHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKAAYIHLRGSDLRPQFHQFTAVP 430
>ref|NP_999293.1| serine/threonine-protein phosphatase 2B catalytic subunit alpha
isoform [Sus scrofa].
Length = 511
Score = 224 bits (570), Expect = 1e-58
Identities = 122/286 (42%), Positives = 171/286 (59%), Gaps = 14/286 (4%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
+L E+ + + IL +E N+ ++ PVTVCGD+HGQF DLM+LF +GG +T YL
Sbjct: 55 RLEENVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYL 114
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRGY+S+E V L ALK+ Y + + +LRGNHE R +T+ + F EC KY + +
Sbjct: 115 FLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SEH 173
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
V+ D FD LPL AL++ Q C+HGGLSP I+TLD IR LDR +E P GPMCD+LWS
Sbjct: 174 VYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWS 233
Query: 987 DP-DDRGGWGI-------SPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHD 1142
DP +D G + RG Y + F N L + RAH+ GY
Sbjct: 234 DPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRK 293
Query: 1143 R------NVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAP 1262
+++TIFSAPNY N+AA+++ ++ + + QF+ +P
Sbjct: 294 SQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSP 338
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,370,402
Number of extensions: 1121442
Number of successful extensions: 2761
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2728
Number of HSP's successfully gapped: 18
Length of query: 552
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,754,644
Effective search space: 3922080512
Effective search space used: 3922080512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012221
(1657 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062284.1| serine/threonine-protein phosphatase 2A catalyt... 652 0.0
Alignment gi|NP_059070.1| serine/threonine-protein phosphatase 2A catalyt... 642 0.0
Alignment gi|NP_062648.1| serine/threonine-protein phosphatase 4 catalyti... 438 e-123
Alignment gi|NP_077171.1| serine/threonine-protein phosphatase 6 catalyti... 374 e-103
Alignment gi|NP_038664.2| serine/threonine-protein phosphatase PP1-gamma ... 297 2e-80
Alignment gi|NP_114074.1| serine/threonine-protein phosphatase PP1-alpha ... 296 4e-80
Alignment gi|NP_766295.2| serine/threonine-protein phosphatase PP1-beta c... 287 1e-77
Alignment gi|NP_035285.2| serine/threonine-protein phosphatase 5 [Mus mus... 228 1e-59
Alignment gi|NP_032939.1| serine/threonine-protein phosphatase 2B catalyt... 224 1e-58
Alignment gi|NP_032940.1| serine/threonine-protein phosphatase 2B catalyt... 219 4e-57
>ref|NP_062284.1| serine/threonine-protein phosphatase 2A catalytic subunit alpha
isoform [Mus musculus].
Length = 309
Score = 652 bits (1681), Expect = 0.0
Identities = 308/309 (99%), Positives = 309/309 (100%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MDEK+FTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDEKLFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 180
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 181 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 240
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 241 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 300
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 301 TRRTPDYFL 309
>ref|NP_059070.1| serine/threonine-protein phosphatase 2A catalytic subunit beta
isoform [Mus musculus].
Length = 309
Score = 642 bits (1657), Expect = 0.0
Identities = 301/309 (97%), Positives = 307/309 (99%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MD+K FTKELDQW+EQLNECKQL+E+QV++LCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY ERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 180
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 181 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 240
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 241 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 300
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 301 TRRTPDYFL 309
>ref|NP_062648.1| serine/threonine-protein phosphatase 4 catalytic subunit [Mus
musculus].
Length = 307
Score = 438 bits (1127), Expect = e-123
Identities = 202/303 (66%), Positives = 248/303 (81%), Gaps = 2/303 (0%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+ IEQL C+ + ES+VK+LC KA+EIL +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKEL 65
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR+GG P+TNYLFMGD+VDRG+YSVET LL+ALKVRY +RIT++RGNHESRQITQVYG
Sbjct: 66 FRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 125
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDECLRKYG+ VW+Y T++FDYL L+A++DG+IFC+HGGLSPSI TLD IR +DR QE
Sbjct: 126 FYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQE 185
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
VPH+GPMCDLLWSDP+D GWG+SPRGAGY FG D+ FN AN + ++ RAHQLVMEGY
Sbjct: 186 VPHDGPMCDLLWSDPEDTTGWGVSPRGAGYLFGSDVVAQFNAANDIDMICRAHQLVMEGY 245
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR--RGEPHVTRRTPD 1301
W + V+T++SAPNYCYRCGN AAI+ELD+ L+ F+ F+ AP+ RG P + D
Sbjct: 246 KWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKDFIIFEAAPQETRGIPS-KKPVAD 304
Query: 1302 YFL 1310
YFL
Sbjct: 305 YFL 307
>ref|NP_077171.1| serine/threonine-protein phosphatase 6 catalytic subunit [Mus
musculus].
Length = 305
Score = 374 bits (960), Expect = e-103
Identities = 175/301 (58%), Positives = 217/301 (72%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+++E +CK L E+ +K LC+ ++L +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 5 DLDKYVEIARQCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCEL 64
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR GG+ PDTNY+FMGD+VDRGYYS+ET T L+ALK ++ +RIT+LRGNHESRQITQVYG
Sbjct: 65 FRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYG 124
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDEC KYGNAN W+Y T +FD L + AL+D QI C+HGGLSP I TLD IR ++R QE
Sbjct: 125 FYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQE 184
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
+PH+G CDL+WSDP+D W ISPRGAG+ FG ++ F H N L L+ RAHQLV EGY
Sbjct: 185 IPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGY 244
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYF 1307
+ D +VT++SAPNYCYRCGN A+IM D F P R T YF
Sbjct: 245 KFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYF 304
Query: 1308 L 1310
L
Sbjct: 305 L 305
>ref|NP_038664.2| serine/threonine-protein phosphatase PP1-gamma catalytic subunit [Mus
musculus].
Length = 323
Score = 297 bits (760), Expect = 2e-80
Identities = 138/282 (48%), Positives = 196/282 (69%), Gaps = 1/282 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
QL E++++ LC K++EI + + E+ P+ +CGD+HGQ++DL+ LF GG P++NYL
Sbjct: 29 QLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 88
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N
Sbjct: 89 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIK 147
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWS
Sbjct: 148 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG ++ F H + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 208 DPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLF 267
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTR 1289
SAPNYC N A+M +D+TL SF PA ++ +P+ TR
Sbjct: 268 SAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK-KPNATR 308
>ref|NP_114074.1| serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Mus
musculus].
Length = 330
Score = 296 bits (757), Expect = 4e-80
Identities = 136/274 (49%), Positives = 191/274 (69%), Gaps = 1/274 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
QL+E++++ LC K++EI + + E+ P+ +CGD+HGQ++DL+ LF GG P++NYL
Sbjct: 29 QLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 88
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K+RY E +LRGNHE I ++YGFYDEC R+Y N
Sbjct: 89 FLGDYVDRGKQSLETICLLLAYKIRYPENFFLLRGNHECASINRIYGFYDECKRRY-NIK 147
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWS
Sbjct: 148 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG ++ F H + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 208 DPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLF 267
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR 1265
SAPNYC N A+M +D+TL SF PA +
Sbjct: 268 SAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301
>ref|NP_766295.2| serine/threonine-protein phosphatase PP1-beta catalytic subunit [Mus
musculus].
Length = 327
Score = 287 bits (735), Expect = 1e-77
Identities = 132/277 (47%), Positives = 189/277 (68%), Gaps = 1/277 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
Q++E++V+ LC K++EI + + E+ P+ +CGD+HGQ+ DL+ LF GG P+ NYL
Sbjct: 28 QMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYL 87
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R++ N
Sbjct: 88 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NIK 146
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP G +CDLLWS
Sbjct: 147 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWS 206
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG D+ F + + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 207 DPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLF 266
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGE 1274
SAPNYC N +M +D+TL SF P+ ++ +
Sbjct: 267 SAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAK 303
>ref|NP_035285.2| serine/threonine-protein phosphatase 5 [Mus musculus].
Length = 499
Score = 228 bits (580), Expect = 1e-59
Identities = 119/295 (40%), Positives = 176/295 (59%), Gaps = 7/295 (2%)
Frame = +3
Query: 399 FTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQ 566
F K+L QW + + K+L + + KE+L K S + E +TVCGD HGQ
Sbjct: 190 FMKDLMQWYK---DQKKLHRKCAYQILVQVKEVLCKLSTLVETTLKETEKITVCGDTHGQ 246
Query: 567 FHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
F+DL+ +F + G +TN Y+F GD+VDRG +SVE + L K+ Y + +LRGNHE+
Sbjct: 247 FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHET 306
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGL-SPSIDTLDH 920
+ Q+YGF E KY A +++ F+++F++LPL ++G++ +HGGL S TLD
Sbjct: 307 DNMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDD 365
Query: 921 IRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSR 1100
IR ++R ++ P GPMCDLLWSDP + G +S RG FG D+++ F N L + R
Sbjct: 366 IRKIERNRQPPDSGPMCDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENQLDYIIR 425
Query: 1101 AHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDT-LKYSFLQFDPAP 1262
+H++ EGY H VT+FSAPNYC + GN+A+ + L + L+ F QF P
Sbjct: 426 SHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 480
>ref|NP_032939.1| serine/threonine-protein phosphatase 2B catalytic subunit alpha
isoform [Mus musculus].
Length = 521
Score = 224 bits (572), Expect = 1e-58
Identities = 123/286 (43%), Positives = 170/286 (59%), Gaps = 14/286 (4%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
+L ES + + IL +E N+ ++ PVTVCGD+HGQF DLM+LF +GG +T YL
Sbjct: 55 RLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYL 114
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRGY+S+E V L ALK+ Y + + +LRGNHE R +T+ + F EC KY +
Sbjct: 115 FLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SER 173
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
V+ D FD LPL AL++ Q C+HGGLSP I+TLD IR LDR +E P GPMCD+LWS
Sbjct: 174 VYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWS 233
Query: 987 DP-DDRGGWGI-------SPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHD 1142
DP +D G + RG Y + F N L + RAH+ GY
Sbjct: 234 DPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCDFLQHNNLLSILRAHEAQDAGYRMYRK 293
Query: 1143 R------NVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAP 1262
+++TIFSAPNY N+AA+++ ++ + + QF+ +P
Sbjct: 294 SQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSP 338
>ref|NP_032940.1| serine/threonine-protein phosphatase 2B catalytic subunit beta
isoform [Mus musculus].
Length = 525
Score = 219 bits (559), Expect = 4e-57
Identities = 120/286 (41%), Positives = 165/286 (57%), Gaps = 14/286 (4%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
++ E + + IL +E + EV P+TVCGD+HGQF DLM+LF +GG +T YL
Sbjct: 64 RVDEEIALRIINEGAAILRREKTMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANTRYL 123
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRGY+S+E V L LK+ Y + +LRGNHE R +T+ + F EC KY +
Sbjct: 124 FLGDYVDRGYFSIECVLYLWVLKILYPSTLFLLRGNHECRHLTEYFTFKQECKIKY-SER 182
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
V++ + FD LPL AL++ Q C+HGGLSP I TLD IR LDR +E P GPMCDLLWS
Sbjct: 183 VYEACMEAFDSLPLAALLNQQFLCVHGGLSPEIHTLDDIRRLDRFKEPPAFGPMCDLLWS 242
Query: 987 DPDDRGGWGISP--------RGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHD 1142
DP + G S RG Y + F N L + RAH+ GY
Sbjct: 243 DPSEDFGNEKSQEHFSHNTVRGCSYFYNYPAVCEFLQNNNLLSIIRAHEAQDAGYRMYRK 302
Query: 1143 R------NVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAP 1262
+++TIFSAPNY N+AA+++ ++ + + QF+ +P
Sbjct: 303 SQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSP 347
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,136,206
Number of extensions: 1111886
Number of successful extensions: 3704
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3676
Number of HSP's successfully gapped: 15
Length of query: 552
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 446
Effective length of database: 12,433,743
Effective search space: 5545449378
Effective search space used: 5545449378
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012221
(1657 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002706.1| serine/threonine-protein phosphatase 2A catalyt... 653 0.0
Alignment gi|NP_001009552.1| serine/threonine-protein phosphatase 2A cata... 642 0.0
Alignment gi|NP_002711.1| serine/threonine-protein phosphatase 4 catalyti... 438 e-123
Alignment gi|NP_002712.1| serine/threonine-protein phosphatase 6 catalyti... 372 e-103
Alignment gi|NP_001116827.1| serine/threonine-protein phosphatase 6 catal... 355 5e-98
Alignment gi|NP_001116841.1| serine/threonine-protein phosphatase 6 catal... 324 1e-88
Alignment gi|NP_002701.1| serine/threonine-protein phosphatase PP1-gamma ... 297 2e-80
Alignment gi|NP_001008709.1| serine/threonine-protein phosphatase PP1-alp... 295 1e-79
Alignment gi|NP_002699.1| serine/threonine-protein phosphatase PP1-alpha ... 295 1e-79
Alignment gi|NP_996759.1| serine/threonine-protein phosphatase PP1-beta c... 287 2e-77
>ref|NP_002706.1| serine/threonine-protein phosphatase 2A catalytic subunit alpha
isoform [Homo sapiens].
Length = 309
Score = 653 bits (1684), Expect = 0.0
Identities = 309/309 (100%), Positives = 309/309 (100%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 180
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 181 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 240
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 241 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 300
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 301 TRRTPDYFL 309
>ref|NP_001009552.1| serine/threonine-protein phosphatase 2A catalytic subunit beta
isoform [Homo sapiens].
Length = 309
Score = 642 bits (1657), Expect = 0.0
Identities = 301/309 (97%), Positives = 307/309 (99%)
Frame = +3
Query: 384 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHG 563
MD+K FTKELDQW+EQLNECKQL+E+QV++LCEKAKEILTKESNVQEVRCPVTVCGDVHG
Sbjct: 1 MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHG 60
Query: 564 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 743
QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY ERITILRGNHES
Sbjct: 61 QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120
Query: 744 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 923
RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHI 180
Query: 924 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 1103
RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA
Sbjct: 181 RALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRA 240
Query: 1104 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 1283
HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV
Sbjct: 241 HQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHV 300
Query: 1284 TRRTPDYFL 1310
TRRTPDYFL
Sbjct: 301 TRRTPDYFL 309
>ref|NP_002711.1| serine/threonine-protein phosphatase 4 catalytic subunit [Homo
sapiens].
Length = 307
Score = 438 bits (1127), Expect = e-123
Identities = 202/303 (66%), Positives = 248/303 (81%), Gaps = 2/303 (0%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+ IEQL C+ + ES+VK+LC KA+EIL +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 6 DLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKEL 65
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR+GG P+TNYLFMGD+VDRG+YSVET LL+ALKVRY +RIT++RGNHESRQITQVYG
Sbjct: 66 FRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 125
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDECLRKYG+ VW+Y T++FDYL L+A++DG+IFC+HGGLSPSI TLD IR +DR QE
Sbjct: 126 FYDECLRKYGSVTVWRYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQE 185
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
VPH+GPMCDLLWSDP+D GWG+SPRGAGY FG D+ FN AN + ++ RAHQLVMEGY
Sbjct: 186 VPHDGPMCDLLWSDPEDTTGWGVSPRGAGYLFGSDVVAQFNAANDIDMICRAHQLVMEGY 245
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR--RGEPHVTRRTPD 1301
W + V+T++SAPNYCYRCGN AAI+ELD+ L+ F+ F+ AP+ RG P + D
Sbjct: 246 KWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQKDFIIFEAAPQETRGIPS-KKPVAD 304
Query: 1302 YFL 1310
YFL
Sbjct: 305 YFL 307
>ref|NP_002712.1| serine/threonine-protein phosphatase 6 catalytic subunit isoform b
[Homo sapiens].
Length = 305
Score = 372 bits (955), Expect = e-103
Identities = 175/301 (58%), Positives = 216/301 (71%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+++E CK L E+ +K LC+ ++L +ESNVQ V PVTVCGD+HGQF+DL EL
Sbjct: 5 DLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCEL 64
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
FR GG+ PDTNY+FMGD+VDRGYYS+ET T L+ALK ++ +RIT+LRGNHESRQITQVYG
Sbjct: 65 FRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYG 124
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDEC KYGNAN W+Y T +FD L + AL+D QI C+HGGLSP I TLD IR ++R QE
Sbjct: 125 FYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQE 184
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
+PH+G CDL+WSDP+D W ISPRGAG+ FG ++ F H N L L+ RAHQLV EGY
Sbjct: 185 IPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGY 244
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYF 1307
+ D +VT++SAPNYCYRCGN A+IM D F P R T YF
Sbjct: 245 KFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYF 304
Query: 1308 L 1310
L
Sbjct: 305 L 305
>ref|NP_001116827.1| serine/threonine-protein phosphatase 6 catalytic subunit isoform a
[Homo sapiens].
Length = 342
Score = 355 bits (912), Expect = 5e-98
Identities = 167/279 (59%), Positives = 202/279 (72%)
Frame = +3
Query: 474 LCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRG 653
LC+ ++L +ESNVQ V PVTVCGD+HGQF+DL ELFR GG+ PDTNY+FMGD+VDRG
Sbjct: 64 LCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMGDFVDRG 123
Query: 654 YYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLF 833
YYS+ET T L+ALK ++ +RIT+LRGNHESRQITQVYGFYDEC KYGNAN W+Y T +F
Sbjct: 124 YYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTKYGNANAWRYCTKVF 183
Query: 834 DYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWG 1013
D L + AL+D QI C+HGGLSP I TLD IR ++R QE+PH+G CDL+WSDP+D W
Sbjct: 184 DMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVWSDPEDVDTWA 243
Query: 1014 ISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCG 1193
ISPRGAG+ FG ++ F H N L L+ RAHQLV EGY + D +VT++SAPNYCYRCG
Sbjct: 244 ISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCG 303
Query: 1194 NQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL 1310
N A+IM D F P R T YFL
Sbjct: 304 NIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYFL 342
>ref|NP_001116841.1| serine/threonine-protein phosphatase 6 catalytic subunit isoform c
[Homo sapiens].
Length = 283
Score = 324 bits (831), Expect = 1e-88
Identities = 159/301 (52%), Positives = 197/301 (65%)
Frame = +3
Query: 408 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 587
+LD+++E CK L E+ +K LC+ ++L +ESNVQ V PVTVCGD+HGQ
Sbjct: 5 DLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQ------- 57
Query: 588 FRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYG 767
GD+VDRGYYS+ET T L+ALK ++ +RIT+LRGNHESRQITQVYG
Sbjct: 58 ---------------GDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYG 102
Query: 768 FYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE 947
FYDEC KYGNAN W+Y T +FD L + AL+D QI C+HGGLSP I TLD IR ++R QE
Sbjct: 103 FYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQE 162
Query: 948 VPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGY 1127
+PH+G CDL+WSDP+D W ISPRGAG+ FG ++ F H N L L+ RAHQLV EGY
Sbjct: 163 IPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGY 222
Query: 1128 NWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYF 1307
+ D +VT++SAPNYCYRCGN A+IM D F P R T YF
Sbjct: 223 KFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYF 282
Query: 1308 L 1310
L
Sbjct: 283 L 283
>ref|NP_002701.1| serine/threonine-protein phosphatase PP1-gamma catalytic subunit
[Homo sapiens].
Length = 323
Score = 297 bits (760), Expect = 2e-80
Identities = 138/282 (48%), Positives = 196/282 (69%), Gaps = 1/282 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
QL E++++ LC K++EI + + E+ P+ +CGD+HGQ++DL+ LF GG P++NYL
Sbjct: 29 QLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 88
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N
Sbjct: 89 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIK 147
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWS
Sbjct: 148 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG ++ F H + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 208 DPDKDVLGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLF 267
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTR 1289
SAPNYC N A+M +D+TL SF PA ++ +P+ TR
Sbjct: 268 SAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKK-KPNATR 308
>ref|NP_001008709.1| serine/threonine-protein phosphatase PP1-alpha catalytic subunit
isoform 3 [Homo sapiens].
Length = 341
Score = 295 bits (754), Expect = 1e-79
Identities = 135/274 (49%), Positives = 191/274 (69%), Gaps = 1/274 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
QL+E++++ LC K++EI + + E+ P+ +CGD+HGQ++DL+ LF GG P++NYL
Sbjct: 40 QLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 99
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N
Sbjct: 100 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIK 158
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWS
Sbjct: 159 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 218
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG ++ F H + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 219 DPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLF 278
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR 1265
SAPNYC N A+M +D+TL SF PA +
Sbjct: 279 SAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 312
>ref|NP_002699.1| serine/threonine-protein phosphatase PP1-alpha catalytic subunit
isoform 1 [Homo sapiens].
Length = 330
Score = 295 bits (754), Expect = 1e-79
Identities = 135/274 (49%), Positives = 191/274 (69%), Gaps = 1/274 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
QL+E++++ LC K++EI + + E+ P+ +CGD+HGQ++DL+ LF GG P++NYL
Sbjct: 29 QLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 88
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N
Sbjct: 89 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIK 147
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWS
Sbjct: 148 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG ++ F H + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 208 DPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLF 267
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPR 1265
SAPNYC N A+M +D+TL SF PA +
Sbjct: 268 SAPNYCGEFDNAGAMMSVDETLMCSFQILKPADK 301
>ref|NP_996759.1| serine/threonine-protein phosphatase PP1-beta catalytic subunit
isoform 1 [Homo sapiens].
Length = 327
Score = 287 bits (735), Expect = 2e-77
Identities = 132/277 (47%), Positives = 189/277 (68%), Gaps = 1/277 (0%)
Frame = +3
Query: 447 QLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 626
Q++E++V+ LC K++EI + + E+ P+ +CGD+HGQ+ DL+ LF GG P+ NYL
Sbjct: 28 QMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYL 87
Query: 627 FMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAN 806
F+GDYVDRG S+ET+ LL+A K++Y E +LRGNHE I ++YGFYDEC R++ N
Sbjct: 88 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRF-NIK 146
Query: 807 VWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWS 986
+WK FTD F+ LP+ A+VD +IFC HGGLSP + +++ IR + R +VP G +CDLLWS
Sbjct: 147 LWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWS 206
Query: 987 DPD-DRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIF 1163
DPD D GWG + RG +TFG D+ F + + L L+ RAHQ+V +GY + R +VT+F
Sbjct: 207 DPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLF 266
Query: 1164 SAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGE 1274
SAPNYC N +M +D+TL SF P+ ++ +
Sbjct: 267 SAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAK 303
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,942,369
Number of extensions: 1293781
Number of successful extensions: 4509
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 4448
Number of HSP's successfully gapped: 27
Length of query: 552
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 444
Effective length of database: 14,737,052
Effective search space: 6543251088
Effective search space used: 6543251088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012221
(1657 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 424 e-116
Sscrofa_Chr15 147 2e-32
Sscrofa_Chr10 66 7e-08
>Sscrofa_Chr02
|| Length = 162569375
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Minus
Query: 484 aggctaaagaaatcctgacaaaagaatccaacgtgcaagaggttcgatgtccagtcactg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142123726 aggctaaagaaatcctgacaaaagaatccaacgtgcaagaggttcgatgtccagtcactg 142123667
Query: 544 tctgtggagatgtgcacgggcaatttcatgatctcatggaactgtttagaattggtggca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142123666 tctgtggagatgtgcacgggcaatttcatgatctcatggaactgtttagaattggtggca 142123607
Query: 604 aatcaccagatacgaattacctgtttatgggagattacgttgacagaggatattattccg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142123606 aatcaccagatacgaattacctgtttatgggagattacgttgacagaggatattattccg 142123547
Query: 664 ttgaaacagttactctgcttgtagctcttaaggt 697
||||||||||||||||||||||||||||||||||
Sbjct: 142123546 ttgaaacagttactctgcttgtagctcttaaggt 142123513
Score = 349 bits (176), Expect = 3e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 694 aggttcgttaccgtgaacgcatcaccattcttcgaggaaatcatgagagcagacagatca 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142119613 aggttcgttaccgtgaacgcatcaccattcttcgaggaaatcatgagagcagacagatca 142119554
Query: 754 cacaagtatatggtttctatgatgagtgtttaaggaaatatggaaatgcaaatgtttgga 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142119553 cacaagtatatggtttctatgatgagtgtttaaggaaatatggaaatgcaaatgtttgga 142119494
Query: 814 aatattttacagatctttttgattatcttcctctcactgcattagtggatgggcag 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142119493 aatattttacagatctttttgattatcttcctctcactgcattagtggatgggcag 142119438
Score = 327 bits (165), Expect = 1e-86
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 958 agggtccaatgtgtgacttgctgtggtcagatccagatgaccgtggaggttggggtatat 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142117690 agggtccaatgtgtgacttgctgtggtcagatccagatgaccgtggaggttggggtatat 142117631
Query: 1018 ctcctcgaggagctggttacacttttgggcaagatatttccgagacatttaatcatgcca 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142117630 ctcctcgaggagctggttacacttttgggcaagatatttccgagacatttaatcatgcca 142117571
Query: 1078 atggcctcacgttggtgtccagagctcatcagctcgtgatggagg 1122
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142117570 atggcctcacgttggtgtccagagctcatcagctcgtgatggagg 142117526
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 1120 agggatataactggtgccatgaccggaatgtagtaacgattttcagtgctccaaactatt 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142116108 agggatataactggtgccatgaccggaatgtagtaacgattttcagtgctccaaactatt 142116049
Query: 1180 gttaccgttgtgggaaccaagctgcaatcatggaacttgatgatactctaaaatactctt 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142116048 gttaccgttgtgggaaccaagctgcaatcatggaacttgatgatactctaaaatactctt 142115989
Query: 1240 t 1240
|
Sbjct: 142115988 t 142115988
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 867 cagatcttctgtctacatggtggcctctcaccatccatagatacactggatcacatcaga 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142118298 cagatcttctgtctacatggtggcctctcaccatccatagatacactggatcacatcaga 142118239
Query: 927 gcacttgatcgcctgcaagaagttccccatgagg 960
||||||||||||||||||||||||||||||||||
Sbjct: 142118238 gcacttgatcgcctgcaagaagttccccatgagg 142118205
Score = 87.7 bits (44), Expect = 2e-14
Identities = 51/52 (98%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 435 aatgagtgcaagcagctgtccgagtcccaggtcaagagcctctgcgagaagg 486
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142143110 aatgagtg-aagcagctgtccgagtcccaggtcaagagcctctgcgagaagg 142143160
>Sscrofa_Chr15
|| Length = 157681621
Score = 147 bits (74), Expect = 2e-32
Identities = 152/178 (85%)
Strand = Plus / Plus
Query: 484 aggctaaagaaatcctgacaaaagaatccaacgtgcaagaggttcgatgtccagtcactg 543
||||||| ||||| || ||||||||||| || |||||||||||||| |||||||| || |
Sbjct: 61682876 aggctaaggaaattctaacaaaagaatcaaatgtgcaagaggttcgttgtccagttacgg 61682935
Query: 544 tctgtggagatgtgcacgggcaatttcatgatctcatggaactgtttagaattggtggca 603
|||||||||||||||| || ||||| |||||||| |||||||| |||||||| ||||| |
Sbjct: 61682936 tctgtggagatgtgcatggtcaattccatgatcttatggaactctttagaatcggtggaa 61682995
Query: 604 aatcaccagatacgaattacctgtttatgggagattacgttgacagaggatattattc 661
|||||||||| || || || || || ||||| || || || |||||||| ||||||||
Sbjct: 61682996 aatcaccagacacaaactatctattcatgggtgactatgtagacagaggttattattc 61683053
Score = 109 bits (55), Expect = 5e-21
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 727 gaggaaatcatgagagcagacagatcacacaagtatatggtttctatgatgagtgtttaa 786
||||||| || |||||| |||| || || ||||||||||| || ||||| || ||| |
Sbjct: 61684899 gaggaaaccacgagagccgacaaattacccaagtatatggcttttatgacgaatgtctgc 61684958
Query: 787 ggaaatatggaaatgcaaatgtttggaaatattttacagatctttttgattatcttcctc 846
|||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 61684959 ggaagtatggaaatgccaatgtttggaaatattttacagatctatttgattatcttccac 61685018
Query: 847 tcactgcattagtggatgg 865
| || || ||||| |||||
Sbjct: 61685019 ttacagctttagtagatgg 61685037
Score = 85.7 bits (43), Expect = 7e-14
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 1120 agggatataactggtgccatgaccggaatgtagtaacgattttcagtgctccaaactatt 1179
||||||| |||||||| ||||||||||| || || || ||||||||||| || || || |
Sbjct: 61689974 agggatacaactggtgtcatgaccggaacgttgttaccattttcagtgcacccaattact 61690033
Query: 1180 gttaccgttgtgggaaccaagctgcaatcatggaa 1214
|||| |||||||||||||| ||||| |||||||||
Sbjct: 61690034 gttatcgttgtgggaaccaggctgctatcatggaa 61690068
Score = 83.8 bits (42), Expect = 3e-13
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 867 cagatcttctgtctacatggtggcctctcaccatccatagatacactggatcacatcaga 926
||||| ||||| || |||||||||||||| ||||||||||||||||||||||| || |||
Sbjct: 61687409 cagatattctgcctccatggtggcctctctccatccatagatacactggatcatataaga 61687468
Query: 927 gcacttgatcgcctgcaagaagttccccatgagg 960
|| || ||||| | |||||||| || |||||||
Sbjct: 61687469 gccctggatcgtttacaagaagtgccacatgagg 61687502
Score = 77.8 bits (39), Expect = 2e-11
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 981 tggtcagatccagatgaccgtggaggttggggtatatctcctcgaggagctggttacact 1040
||||| ||||| ||||| ||||| || ||||| || || || || || ||||| |||||
Sbjct: 61687631 tggtcggatccggatgatcgtggtgggtggggcatctcaccacgtggtgctggctacaca 61687690
Query: 1041 tttgggcaagatatttccgagacatttaatcatgccaatggcctcac 1087
||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct: 61687691 tttggacaagatatttctgaaacatttaaccatgccaatggcctcac 61687737
>Sscrofa_Chr10
|| Length = 79102373
Score = 65.9 bits (33), Expect = 7e-08
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 727 gaggaaatcatgagagcagacagatcacacaagtatatggtttctatgatgagtgtttaa 786
|||||||||||||||| |||||||| ||||| || ||||| || ||||||||||| ||
Sbjct: 22269354 gaggaaatcatgagagtagacagataacacaggtgtatggattttatgatgagtgccaaa 22269295
Query: 787 ggaaatatggaaatgcaaatg 807
|||||||||||||| ||||
Sbjct: 22269294 ccaaatatggaaatgctaatg 22269274
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,109,880
Number of extensions: 245
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 12
Length of query: 1657
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1635
Effective length of database: 2,808,408,574
Effective search space: 4591748018490
Effective search space used: 4591748018490
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)