Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012225
(1046 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028787.1| cathepsin S precursor [Bos taurus]. 447 e-126
Alignment gi|NP_001029607.1| cathepsin K [Bos taurus]. 256 3e-68
Alignment gi|NP_001077155.1| cathepsin L1 [Bos taurus]. 217 3e-58
Alignment gi|NP_776457.1| cathepsin L2 precursor [Bos taurus]. 216 4e-57
Alignment gi|NP_001029557.1| pro-cathepsin H precursor [Bos taurus]. 143 7e-36
Alignment gi|NP_001068884.1| cathepsin F [Bos taurus]. 96 4e-20
Alignment gi|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [B... 91 2e-18
Alignment gi|XP_874012.3| PREDICTED: cathepsin O [Bos taurus]. 91 2e-18
Alignment gi|NP_001103540.1| cathepsin W [Bos taurus]. 87 2e-17
Alignment gi|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus]. 68 2e-11
>ref|NP_001028787.1| cathepsin S precursor [Bos taurus].
Length = 331
Score = 447 bits (1150), Expect = e-126
Identities = 217/276 (78%), Positives = 231/276 (83%), Gaps = 4/276 (1%)
Frame = +3
Query: 144 MKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVM 323
M LVW LLLCSSAMA +HRDPTLD HWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTV
Sbjct: 1 MNWLVWALLLCSSAMAHVHRDPTLDHHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVT 60
Query: 324 LHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMD 503
LHNLEHSMGMHSY+LGMNHLGDMTSEEVISLMS +RVPSQWPRNVTYKS+PNQKLPDSMD
Sbjct: 61 LHNLEHSMGMHSYELGMNHLGDMTSEEVISLMSSLRVPSQWPRNVTYKSDPNQKLPDSMD 120
Query: 504 WREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGC 683
WREKGCVTEVKYQG+CGSCWAFSAVGALEAQVK+KTG+LVSLSAQNLVDCST KY NKGC
Sbjct: 121 WREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSTAKYGNKGC 180
Query: 684 NGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK 863
NGGFMTEAFQYIIDNNGIDSEASYPYKA+DGKCQYD K S + F LK+
Sbjct: 181 NGGFMTEAFQYIIDNNGIDSEASYPYKAMDGKCQYDVKNRAATCSRYIELPFGSEEALKE 240
Query: 864 L----WPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
P+ + F LY++GVYYDPSCT
Sbjct: 241 AVANKGPVSVGIDASHSS---FFLYKTGVYYDPSCT 273
Score = 57.4 bits (137), Expect = 2e-08
Identities = 40/89 (44%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +2
Query: 791 LKNRAATCFRYTELPFRDEYAFKEAVANRXLCPVL*MRSILLFSLQEWCLL*PLLYSECE 970
+KNRAATC RY ELPF E A KEAVAN+ V S F L + + C
Sbjct: 217 VKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVY---YDPSCT 273
Query: 971 SGCTSGRLXVPXW----EDYWLVKNSWGL 1045
G L V +DYWLVKNSWGL
Sbjct: 274 QNVNHGVLVVGYGNLDGKDYWLVKNSWGL 302
>ref|NP_001029607.1| cathepsin K [Bos taurus].
Length = 334
Score = 256 bits (653), Expect = 3e-68
Identities = 133/268 (49%), Positives = 173/268 (64%), Gaps = 3/268 (1%)
Frame = +3
Query: 162 VLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEH 341
VLLL + A L+ + LD W+LWKKTY KQY K +E++RRLIWEKNLK + +HNLE
Sbjct: 11 VLLLPVVSFA-LYPEEILDTQWELWKKTYRKQYNSKGDEISRRLIWEKNLKHISIHNLEA 69
Query: 342 SMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPR--NVTYKSNPNQKLPDSMDWREK 515
S+G+H+Y+L MNHLGDMTSEEV+ M+ ++VP+ R + Y + + PDS+D+R+K
Sbjct: 70 SLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPASRSRSNDTLYIPDWEGRAPDSVDYRKK 129
Query: 516 GCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGF 695
G VT VK QG CGSCWAFS+VGALE Q+K KTG+L++LS QNLVDC +E N GC GG+
Sbjct: 130 GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE---NDGCGGGY 186
Query: 696 MTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK-LWP 872
MT AFQY+ N GIDSE +YPY D C Y+ + + G LK+ +
Sbjct: 187 MTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 246
Query: 873 IGTCVPCYRCEAFFFSLYRSGVYYDPSC 956
+G F YR GVYYD +C
Sbjct: 247 VGPISVAIDASLTSFQFYRKGVYYDENC 274
>ref|NP_001077155.1| cathepsin L1 [Bos taurus].
Length = 333
Score = 217 bits (553), Expect(2) = 3e-58
Identities = 117/272 (43%), Positives = 158/272 (58%), Gaps = 3/272 (1%)
Frame = +3
Query: 153 LVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHN 332
L+ L A A D +LD W LWK + K Y + NEE R+ +W+KN+K + LHN
Sbjct: 5 LLLTALCLGIASAAPKFDHSLDTQWKLWKAAHRKPY-DLNEEGWRKAVWKKNMKMIELHN 63
Query: 333 LEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWRE 512
E+S G HS+ + MN GDMT+EE M+ + + + +P S+DWRE
Sbjct: 64 QEYSQGKHSFSMAMNAFGDMTNEEFRHTMNGFQRQKN-KKGKEFHETIFASIPPSVDWRE 122
Query: 513 KGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGG 692
KG VT VK QG CGSCWAFSA GALE Q+ KTG+LVSLS QNLVDCS + N+GC+GG
Sbjct: 123 KGYVTPVKNQGKCGSCWAFSATGALEGQMFQKTGKLVSLSEQNLVDCS-QPEGNRGCHGG 181
Query: 693 FMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNF---LFAMNMPLKK 863
F+ AFQY++D G+DSE SYPY + G C Y+ +G ++ A+ +
Sbjct: 182 FIDNAFQYVLDVGGLDSEESYPYTGLVGTCLYNPNNSAANETGFVDLPKQEKALMKAVAN 241
Query: 864 LWPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
L PI V + F Y+SG+YY+P+C+
Sbjct: 242 LGPISVAVDAHNPS---FQFYKSGIYYEPNCS 270
Score = 26.9 bits (58), Expect(2) = 3e-58
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWLVKNSWG
Sbjct: 295 YWLVKNSWG 303
>ref|NP_776457.1| cathepsin L2 precursor [Bos taurus].
Length = 334
Score = 216 bits (550), Expect(2) = 4e-57
Identities = 118/266 (44%), Positives = 152/266 (57%), Gaps = 1/266 (0%)
Frame = +3
Query: 165 LLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHS 344
+L A A DP LD HW WK T+ + Y NEE RR +WEKN K + LHN E+S
Sbjct: 9 VLCLGVASAAPKLDPNLDAHWHQWKATHRRLYG-MNEEEWRRAVWEKNKKIIDLHNQEYS 67
Query: 345 MGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCV 524
G H++ + MN GDMT+EE +M+ + + + + +P S+DW +KG V
Sbjct: 68 EGKHAFRMAMNAFGDMTNEEFRQVMNGFQ-NQKHKKGKLFHEPLLVDVPKSVDWTKKGYV 126
Query: 525 TEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTE 704
T VK QG CGSCWAFSA GALE Q+ KTG+LVSLS QNLVDCS + N+GCNGG M
Sbjct: 127 TPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQ-GNQGCNGGLMDN 185
Query: 705 AFQYIIDNNGIDSEASYPYKAVD-GKCQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGT 881
AFQYI DN G+DSE SYPY A D C Y + +G ++ +K + +G
Sbjct: 186 AFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGFVDIPQREKALMKAVATVGP 245
Query: 882 CVPCYRCEAFFFSLYRSGVYYDPSCT 959
F Y+SG+YYDP C+
Sbjct: 246 ISVAIDAGHTSFQFYKSGIYYDPDCS 271
Score = 24.6 bits (52), Expect(2) = 4e-57
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
+W+VKNSWG
Sbjct: 296 FWIVKNSWG 304
>ref|NP_001029557.1| pro-cathepsin H precursor [Bos taurus].
Length = 335
Score = 143 bits (361), Expect(2) = 7e-36
Identities = 97/287 (33%), Positives = 140/287 (48%), Gaps = 4/287 (1%)
Frame = +3
Query: 108 ILCIGAPAGSIIMKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVAR 287
+LC GA W+L + A+L + H+ W + K+Y +EE
Sbjct: 7 LLCAGA-----------WLLGAPACGAAELAANSLEKFHFQSWMVQHQKKYS--SEEYYH 53
Query: 288 RL-IWEKNLKTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVIS--LMSCVRVPSQWPRNV 458
RL + NL+ + HN + H++ +G+N DM+ +E+ L S + S N
Sbjct: 54 RLQAFASNLREINAHNARN----HTFKMGLNQFSDMSFDELKRKYLWSEPQNCSATKSNY 109
Query: 459 TYKSNPNQKLPDSMDWREKG-CVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSA 635
+ P P SMDWR+KG VT VK QGSCGSCW FS GALE+ V + TG+L L+
Sbjct: 110 LRGTGP---YPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAE 166
Query: 636 QNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRV 815
Q LVDC+ + + N GC GG ++AF+YI N GI E +YPY+ DG C+Y + V
Sbjct: 167 QQLVDCA-QNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGDCKYQPSKAIAFV 225
Query: 816 SGILNFLFAMNMPLKKLWPIGTCVPCYRCEAFFFSLYRSGVYYDPSC 956
+ N + + + V F +YR G+Y SC
Sbjct: 226 KDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMMYRKGIYSSTSC 272
Score = 26.2 bits (56), Expect(2) = 7e-36
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YW+VKNSWG
Sbjct: 296 YWIVKNSWG 304
>ref|NP_001068884.1| cathepsin F [Bos taurus].
Length = 460
Score = 96.3 bits (238), Expect = 4e-20
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 1/186 (0%)
Frame = +3
Query: 243 TYGKQYKEKNEEVARRLIWEKNL-KTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVISLM 419
TY + Y + E R ++ N+ + + L+ + G+ D+T EE ++
Sbjct: 169 TYNRTYDSQEEASWRMSVFANNMVRAQKIQALDRGTARY----GVTKFSDLTEEEFRTIY 224
Query: 420 SCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQV 599
+ RN+ P DWR KG VT VK QG CGSCWAFS G +E Q
Sbjct: 225 LNPLLKDAPGRNMRPAQPVTDVPPPQWDWRNKGAVTNVKDQGMCGSCWAFSVTGNVEGQW 284
Query: 600 KMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGK 779
+K G L+SLS Q L+DC +K C GG + A+ I G+++E Y Y+
Sbjct: 285 FLKRGTLLSLSEQELLDCDK---TDKACLGGLPSNAYSAIRTLGGLETEDDYSYRGRLQT 341
Query: 780 CQYDSK 797
C + ++
Sbjct: 342 CSFSAE 347
>ref|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [Bos taurus].
Length = 375
Score = 90.9 bits (224), Expect = 2e-18
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Frame = +3
Query: 435 PSQWPRNVT--YKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMK 608
PS++PR Y S N LP DWR+K VT+V+ Q +CG CWAFS VGA+E+ +K
Sbjct: 143 PSRFPRFPAEEYTSISNLSLPLRFDWRDKHVVTQVRNQKTCGGCWAFSVVGAVESVCAIK 202
Query: 609 TGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIID-NNGIDSEASYPYKAVDGKCQ 785
L LS Q ++DCS Y N GCNGG A ++ + ++ YP++A +G C+
Sbjct: 203 GQPLEVLSVQQVIDCS---YSNYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQNGLCR 259
Query: 786 YDS 794
Y S
Sbjct: 260 YFS 262
>ref|XP_874012.3| PREDICTED: cathepsin O [Bos taurus].
Length = 384
Score = 90.9 bits (224), Expect = 2e-18
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Frame = +3
Query: 435 PSQWPRNVT--YKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMK 608
PS++PR Y S N LP DWR+K VT+V+ Q +CG CWAFS VGA+E+ +K
Sbjct: 152 PSRFPRFPAEEYTSISNLSLPLRFDWRDKHVVTQVRNQKTCGGCWAFSVVGAVESVCAIK 211
Query: 609 TGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIID-NNGIDSEASYPYKAVDGKCQ 785
L LS Q ++DCS Y N GCNGG A ++ + ++ YP++A +G C+
Sbjct: 212 GQPLEVLSVQQVIDCS---YSNYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQNGLCR 268
Query: 786 YDS 794
Y S
Sbjct: 269 YFS 271
>ref|NP_001103540.1| cathepsin W [Bos taurus].
Length = 272
Score = 87.0 bits (214), Expect = 2e-17
Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 1/203 (0%)
Frame = +3
Query: 231 LWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVI 410
L++ Y + Y E R I+ +NL E +G + + G+ D+T EE +
Sbjct: 44 LFQMQYNRSYPNPAEYARRLDIFAQNLAKAQRLQ-EEDLG--TAEFGVTQFSDLTEEEFV 100
Query: 411 SLM-SCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGAL 587
L S V + + P + DWR+ G ++ V+ Q +C CWA +A G +
Sbjct: 101 QLYGSQVAGEALGVSRKVGSEEWGESEPQTCDWRKVGTISPVRDQRNCNCCWAMAAAGNI 160
Query: 588 EAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKA 767
EA +K V +S Q L+DC GC GGF+ +AF +++N+G+ SE YP+
Sbjct: 161 EALWAIKFRHFVEVSVQQLLDCDR---CGNGCRGGFVWDAFLTVLNNSGLASEKDYPFNG 217
Query: 768 VDGKCQYDSKIELPRVSGILNFL 836
GK + +V+ I +F+
Sbjct: 218 -SGKTHRCLAKKYKKVAWIQDFI 239
>ref|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].
Length = 463
Score = 67.8 bits (164), Expect = 2e-11
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Frame = +3
Query: 429 RVPSQWPRNVTYKSNPN-QKLPDSMDWREK---GCVTEVKYQGSCGSCWAFSAVGALEAQ 596
R+P P +T + LP S DWR VT V+ QGSCGSC++F+++G +EA+
Sbjct: 211 RIPRPKPAPITAEIQKKILHLPTSWDWRNVHGINFVTPVRNQGSCGSCYSFASMGMMEAR 270
Query: 597 VKMKTGRLVS--LSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAV 770
+++ T + LS Q +V CS +GC GGF + G+ E +PY
Sbjct: 271 IRILTNNTQTPILSPQEVVSCSQYA---QGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGT 327
Query: 771 DGKCQ 785
D C+
Sbjct: 328 DSPCR 332
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,323,397
Number of extensions: 997281
Number of successful extensions: 2895
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2865
Number of HSP's successfully gapped: 19
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012225
(1046 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002938.1| cathepsin S precursor [Canis lupus familiari... 423 e-118
Alignment gi|NP_001029168.1| cathepsin K precursor [Canis lupus familiari... 258 9e-69
Alignment gi|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Ma... 215 3e-57
Alignment gi|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiar... 208 8e-55
Alignment gi|XP_855060.1| PREDICTED: similar to Cathepsin L2 precursor (C... 160 2e-39
Alignment gi|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Ca... 129 1e-31
Alignment gi|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CA... 100 2e-21
Alignment gi|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Ca... 91 2e-18
Alignment gi|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein... 86 8e-17
Alignment gi|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiar... 69 2e-14
>ref|NP_001002938.1| cathepsin S precursor [Canis lupus familiaris].
Length = 331
Score = 423 bits (1087), Expect = e-118
Identities = 206/276 (74%), Positives = 227/276 (82%), Gaps = 4/276 (1%)
Frame = +3
Query: 144 MKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVM 323
MK LV +L LCS A+AQ+H+DPTLD HW+LWKKTY KQYKE+NEEVARRLIWEKNLK VM
Sbjct: 1 MKWLVGLLPLCSYAVAQVHKDPTLDHHWNLWKKTYSKQYKEENEEVARRLIWEKNLKFVM 60
Query: 324 LHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMD 503
LHNLEHSMGMHSYDLGMNHLGDMT EEVISLM +RVPSQW RNVTY+SN NQKLPDS+D
Sbjct: 61 LHNLEHSMGMHSYDLGMNHLGDMTGEEVISLMGSLRVPSQWQRNVTYRSNSNQKLPDSVD 120
Query: 504 WREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGC 683
WREKGCVTEVKYQGSCG+CWAFSAVGALEAQ+K+KTG+LVSLSAQNLVDCSTEKY NKGC
Sbjct: 121 WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGC 180
Query: 684 NGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK 863
NGGFMT AFQYIIDNNGIDSEASYPYKA++GKC+YDSK S F LK+
Sbjct: 181 NGGFMTTAFQYIIDNNGIDSEASYPYKAMNGKCRYDSKKRAATCSKYTELPFGSEDALKE 240
Query: 864 L----WPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
P+ + + F LYRSGVYY+PSCT
Sbjct: 241 AVANKGPVSVAID---ASHYSFFLYRSGVYYEPSCT 273
Score = 57.0 bits (136), Expect = 3e-08
Identities = 41/90 (45%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +2
Query: 794 KNRAATCFRYTELPFRDEYAFKEAVANRXLCPVL*MRSILLFSLQEWCLL*PLLYSE--C 967
K RAATC +YTELPF E A KEAVAN+ V S F L +Y E C
Sbjct: 218 KKRAATCSKYTELPFGSEDALKEAVANKGPVSVAIDASHYSFFLYR-----SGVYYEPSC 272
Query: 968 ESGCTSGRLXVPXW----EDYWLVKNSWGL 1045
G L V +DYWLVKNSWGL
Sbjct: 273 TQNVNHGVLVVGYGNLNGKDYWLVKNSWGL 302
>ref|NP_001029168.1| cathepsin K precursor [Canis lupus familiaris].
Length = 330
Score = 258 bits (658), Expect = 9e-69
Identities = 133/268 (49%), Positives = 170/268 (63%), Gaps = 3/268 (1%)
Frame = +3
Query: 162 VLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEH 341
VLLL A L+ + LD WDLWKKTY KQY K +E++RRLIWEKNLK + +HNLE
Sbjct: 6 VLLLLPMASFALYPEEILDTQWDLWKKTYRKQYNSKVDELSRRLIWEKNLKHISIHNLEA 65
Query: 342 SMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPR--NVTYKSNPNQKLPDSMDWREK 515
S+G+H+Y+L MNHLGDMTSEEV+ M+ ++VP R + Y + + PDS+D+R+K
Sbjct: 66 SLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTLYIPDWESRAPDSVDYRKK 125
Query: 516 GCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGF 695
G VT VK QG CGSCWAFS+VGALE Q+K KTG+L++LS QNLVDC +E N GC GG+
Sbjct: 126 GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE---NDGCGGGY 182
Query: 696 MTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK-LWP 872
MT AFQY+ N GIDSE +YPY D C Y+ + + G LK+ +
Sbjct: 183 MTNAFQYVQKNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 242
Query: 873 IGTCVPCYRCEAFFFSLYRSGVYYDPSC 956
+G F Y GVYYD +C
Sbjct: 243 VGPISVAIDASLTSFQFYSKGVYYDENC 270
>ref|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Major excreted
protein) (MEP) [Canis familiaris].
Length = 333
Score = 215 bits (547), Expect(2) = 3e-57
Identities = 111/259 (42%), Positives = 154/259 (59%)
Frame = +3
Query: 183 AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSY 362
A A +D +LD HW WK+ +GK Y +K+EE RR +WE+N++ + HN E+S G HS+
Sbjct: 15 ASAAPQQDHSLDAHWSQWKEAHGKLY-DKDEEGWRRTVWERNMEMIEQHNQEYSQGEHSF 73
Query: 363 DLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQ 542
L MN GDMT+EE +++ ++ + + + ++P S+DWRE+G VT VK Q
Sbjct: 74 TLAMNAFGDMTNEEFKQVLNDFKIQKH-KKGKVFPAPLFAEVPSSVDWREQGYVTPVKDQ 132
Query: 543 GSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYII 722
G C CWAFSA GALE Q+ KTG+LVSLS QNLVDCS + N+GCNGG M AFQY+
Sbjct: 133 GQCLGCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSWSQ-GNRGCNGGLMEYAFQYVK 191
Query: 723 DNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPCYRC 902
DN G+DSE SYPY A + C+Y + V+ L + + + +G
Sbjct: 192 DNGGLDSEESYPYLARNEPCKYRPEKSAANVTAFWPILNEEDGLMTTVATVGPVSAAVDS 251
Query: 903 EAFFFSLYRSGVYYDPSCT 959
F Y+ G+YYDP C+
Sbjct: 252 SPQSFQFYKKGIYYDPKCS 270
Score = 26.2 bits (56), Expect(2) = 3e-57
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YW+VKNSWG
Sbjct: 295 YWIVKNSWG 303
>ref|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiaris].
Length = 333
Score = 208 bits (530), Expect(2) = 8e-55
Identities = 110/253 (43%), Positives = 150/253 (59%), Gaps = 1/253 (0%)
Frame = +3
Query: 204 DPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHL 383
D +L+ W WK T+ + Y NEE RR +WEKN+K + LHN E+S G H + + MN
Sbjct: 22 DQSLNAQWYQWKATHRRLYG-MNEEGWRRAVWEKNMKMIELHNREYSQGKHGFTMAMNAF 80
Query: 384 GDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCW 563
GDMT+EE +M+ + + + ++ ++P S+DWREKG VT VK QG CGSCW
Sbjct: 81 GDMTNEEFRQVMNGFQ-NQKHKKGKMFQEPLFAEIPKSVDWREKGYVTPVKNQGQCGSCW 139
Query: 564 AFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDS 743
AFSA GALE Q+ KTG+LVSLS QNLVDCS + N+GCNGG M AF+Y+ DN G+DS
Sbjct: 140 AFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQ-GNEGCNGGLMDNAFRYVKDNGGLDS 198
Query: 744 EASYPYKAVDGK-CQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPCYRCEAFFFS 920
E SYPY D + C Y + +G ++ +K + +G F
Sbjct: 199 EESYPYLGRDTETCNYKPECSAANDTGFVDLPQREKALMKAVATLGPISVAIDAGHQSFQ 258
Query: 921 LYRSGVYYDPSCT 959
Y+SG+Y+DP C+
Sbjct: 259 FYKSGIYFDPDCS 271
Score = 24.6 bits (52), Expect(2) = 8e-55
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
+W+VKNSWG
Sbjct: 295 FWIVKNSWG 303
>ref|XP_855060.1| PREDICTED: similar to Cathepsin L2 precursor (Cathepsin V)
(Cathepsin U) [Canis familiaris].
Length = 289
Score = 160 bits (404), Expect = 2e-39
Identities = 86/190 (45%), Positives = 113/190 (59%)
Frame = +3
Query: 204 DPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHL 383
D +L+ W WK + + NEE RR +WEKN+K + LHN E+S G H + + MN
Sbjct: 19 DQSLNAQWYQWKAMH--RLYAMNEEGWRRAVWEKNMKMIELHNREYSQGKHGFTMAMNAF 76
Query: 384 GDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCW 563
G MT+EE +M+ + + + ++ ++P S+DWREKG VT VK QG CGSCW
Sbjct: 77 GYMTNEEFRQVMNGFQ-NQKHKKGKVFQEPLFAEIPKSVDWREKGYVTPVKNQGHCGSCW 135
Query: 564 AFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDS 743
AFSA G L+ Q+ KTG+L NLVDC + NKGCNGG M AFQY+ DN G+DS
Sbjct: 136 AFSATGDLKGQMFQKTGKL------NLVDC-YQAQGNKGCNGGLMDNAFQYVKDNGGLDS 188
Query: 744 EASYPYKAVD 773
E Y Y D
Sbjct: 189 EECYLYLGRD 198
>ref|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Canis familiaris].
Length = 304
Score = 129 bits (325), Expect(2) = 1e-31
Identities = 86/239 (35%), Positives = 121/239 (50%), Gaps = 5/239 (2%)
Frame = +3
Query: 255 QYKEKNEEVARRL-IWEKNLKTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVIS--LMSC 425
Q K +EE +RL + N + + HN G H++ +G+N DM E+ L S
Sbjct: 11 QKKYSSEEYLQRLQTFVGNWRKINAHNA----GNHTFKMGLNQFSDMNFAEIKHKYLWSE 66
Query: 426 VRVPSQWPRNVTYKSNPNQKLPDSMDWREKG-CVTEVKYQGSCGSCWAFSAVGALEAQVK 602
+ S N + P P +DWR+KG V+ VK QGSCGSCW FS GALE+ +
Sbjct: 67 PQNCSATKGNYLRGTGP---YPPFVDWRKKGKFVSPVKNQGSCGSCWTFSTTGALESAIA 123
Query: 603 MKTGRLVSLSAQNLVDCSTEKYRNKGCNG-GFMTEAFQYIIDNNGIDSEASYPYKAVDGK 779
+K+G+L+SL+ Q LVDC+ + + N GC G G +AF+YI N GI E SYPYK DG
Sbjct: 124 IKSGKLLSLAEQQLVDCA-QNFNNHGCQGYGAPLQAFEYIRYNKGIMGEDSYPYKGQDGD 182
Query: 780 CQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPCYRCEAFFFSLYRSGVYYDPSC 956
C+Y + V + N + + + V F +YR G+Y SC
Sbjct: 183 CKYQPSKAIAFVKDVANITINDEQAMVEAVALYNPVSFAFEVTSDFMMYRKGIYSSTSC 241
Score = 26.2 bits (56), Expect(2) = 1e-31
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YW+VKNSWG
Sbjct: 265 YWIVKNSWG 273
>ref|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CATSF) [Canis
familiaris].
Length = 442
Score = 100 bits (249), Expect = 2e-21
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 2/187 (1%)
Frame = +3
Query: 243 TYGKQYKEKNEEVARRLIWEKNL-KTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVISL- 416
TY + Y+ K E R ++ N+ + + L+ + G+ D+T EE ++
Sbjct: 150 TYNRTYETKEEAEWRMSVFSNNMVRAQKIQALDRGTAQY----GITKFSDLTEEEFRTIY 205
Query: 417 MSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQ 596
++ + ++ + KS + P DWR KG VT+VK QG CGSCWAFS G +E Q
Sbjct: 206 LNPLLRENRGKKMRLAKSISDHAPPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQ 265
Query: 597 VKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDG 776
+K G L+SLS Q L+DC +K C GG + A+ I+ G+++E Y Y+
Sbjct: 266 WFLKEGTLLSLSEQELLDCDKV---DKACLGGLPSNAYSAIMTLGGLETEDDYSYQGHLQ 322
Query: 777 KCQYDSK 797
C + +K
Sbjct: 323 ACSFSAK 329
>ref|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Canis familiaris].
Length = 518
Score = 90.5 bits (223), Expect = 2e-18
Identities = 54/145 (37%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Frame = +3
Query: 369 GMNHLGDMTSEE--VISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQ 542
G+N ++ EE I L S ++P V S N LP DWR+K VT+V+ Q
Sbjct: 263 GINQFSYLSPEEFKAIYLRSKPSRSPRYPAEVR-TSIRNVSLPLRFDWRDKRVVTQVRNQ 321
Query: 543 GSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYII 722
+CG CWAFS VGA+E+ +K L +S Q ++DCS Y N GC+GG A ++
Sbjct: 322 QTCGGCWAFSVVGAVESAYAIKGKPLADISVQQVIDCS---YNNYGCSGGSTLNALNWLN 378
Query: 723 DNN-GIDSEASYPYKAVDGKCQYDS 794
+ ++ YP+KA +G C Y S
Sbjct: 379 KTQVKLVRDSEYPFKAQNGLCHYFS 403
>ref|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein [Canis familiaris].
Length = 374
Score = 85.5 bits (210), Expect = 8e-17
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Frame = +3
Query: 231 LWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHLG-----DMT 395
L++ Y + Y EE ARRL + HNL + + DLG G D+T
Sbjct: 44 LFQIQYNRSYSNP-EEYARRL-------DIFAHNLAQAQQLEDEDLGTAEFGVTPFSDLT 95
Query: 396 SEEVISLMSCVRVPSQWPR--NVTYKSNPNQKLPDSMDWRE-KGCVTEVKYQGSCGSCWA 566
EE R+ + P + +P + DWR+ G ++ +K QG+C CWA
Sbjct: 96 EEEFGQFYGHQRMAGEAPSVGRKVESEEWGEPVPPTCDWRKLPGIISPIKQQGNCRCCWA 155
Query: 567 FSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSE 746
+A G +EA ++ + V +S Q L+DC GC GGF +AF +++N+G+ S
Sbjct: 156 MAAAGNIEALWGIRYHQPVEVSVQELLDCGR---CGDGCKGGFTWDAFITVLNNSGLASA 212
Query: 747 ASYPY 761
YP+
Sbjct: 213 KDYPF 217
>ref|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiaris].
Length = 459
Score = 69.3 bits (168), Expect(2) = 2e-14
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 13/198 (6%)
Frame = +3
Query: 390 MTSEEVISLMSCVRVPSQWPRNVTYKSNPN-QKLPDSMDWRE---KGCVTEVKYQGSCGS 557
+T ++++ + ++P P +T + + +LP S DWR V+ V+ Q SCGS
Sbjct: 195 LTLRDMMTRVGGRKIPRPKPTPLTAEIHEEISRLPTSWDWRNVRGTNFVSPVRNQASCGS 254
Query: 558 CWAFSAVGALEAQVKMKTGRLVS--LSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNN 731
C+AF++ LEA++++ T + LS Q +V CS +GC GGF +
Sbjct: 255 CYAFASTAMLEARIRILTNNTQTPILSPQEIVSCSQYA---QGCEGGFPYLIAGKYAQDF 311
Query: 732 GIDSEASYPYKAVDGKCQYDS-----KIELPRVSGILNFLFAMNMPLKKLWPI--GTCVP 890
G+ EA +PY D C+ + E V G F A N L KL + G
Sbjct: 312 GLVEEACFPYAGSDSPCKPNDCFRYYSSEYYYVGG---FYGACNEALMKLELVRHGPMAV 368
Query: 891 CYRCEAFFFSLYRSGVYY 944
+ FF Y+ G+YY
Sbjct: 369 AFEVYDDFFH-YQKGIYY 385
Score = 28.5 bits (62), Expect(2) = 2e-14
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1013 DYWLVKNSWG 1042
DYW+VKNSWG
Sbjct: 417 DYWIVKNSWG 426
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,895,996
Number of extensions: 1015254
Number of successful extensions: 3191
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3165
Number of HSP's successfully gapped: 18
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012225
(1046 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa]. 485 e-137
Alignment gi|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa]. 485 e-137
Alignment gi|NP_999467.1| cathepsin K precursor [Sus scrofa]. 254 7e-68
Alignment gi|NP_999057.1| cathepsin L1 precursor [Sus scrofa]. 216 2e-57
Alignment gi|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa]. 212 9e-57
Alignment gi|NP_999094.1| pro-cathepsin H precursor [Sus scrofa]. 137 4e-34
Alignment gi|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa]. 101 8e-22
Alignment gi|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa]. 92 5e-19
Alignment gi|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus s... 70 3e-12
Alignment gi|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus ... 67 2e-11
>ref|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa].
Length = 331
Score = 485 bits (1249), Expect = e-137
Identities = 237/276 (85%), Positives = 241/276 (87%), Gaps = 4/276 (1%)
Frame = +3
Query: 144 MKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVM 323
MKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVM
Sbjct: 1 MKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVM 60
Query: 324 LHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMD 503
LHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMD
Sbjct: 61 LHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMD 120
Query: 504 WREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGC 683
WREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGC
Sbjct: 121 WREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGC 180
Query: 684 NGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK 863
NGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKC+YDSK S FA LK+
Sbjct: 181 NGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCKYDSKNRAATCSRYTELPFADEYALKE 240
Query: 864 L----WPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
P+ + FF YRSGVYYDPSCT
Sbjct: 241 AVANKGPVSVAIDAKHSSFFF---YRSGVYYDPSCT 273
Score = 65.5 bits (158), Expect = 5e-11
Identities = 42/89 (47%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +2
Query: 794 KNRAATCFRYTELPFRDEYAFKEAVANRXLCPV-L*MRSILLFSLQEWCLL*PLLYSECE 970
KNRAATC RYTELPF DEYA KEAVAN+ V + + F + P C
Sbjct: 218 KNRAATCSRYTELPFADEYALKEAVANKGPVSVAIDAKHSSFFFYRSGVYYDP----SCT 273
Query: 971 SGCTSGRLXVPXW----EDYWLVKNSWGL 1045
G L V +DYWLVKNSWGL
Sbjct: 274 QNVNHGVLVVGYGNLNGKDYWLVKNSWGL 302
>ref|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa].
Length = 331
Score = 485 bits (1249), Expect = e-137
Identities = 237/276 (85%), Positives = 241/276 (87%), Gaps = 4/276 (1%)
Frame = +3
Query: 144 MKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVM 323
MKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVM
Sbjct: 1 MKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVM 60
Query: 324 LHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMD 503
LHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMD
Sbjct: 61 LHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMD 120
Query: 504 WREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGC 683
WREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGC
Sbjct: 121 WREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGC 180
Query: 684 NGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK 863
NGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKC+YDSK S FA LK+
Sbjct: 181 NGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCKYDSKNRAATCSRYTELPFADEYALKE 240
Query: 864 L----WPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
P+ + FF YRSGVYYDPSCT
Sbjct: 241 AVANKGPVSVAIDAKHSSFFF---YRSGVYYDPSCT 273
Score = 65.5 bits (158), Expect = 5e-11
Identities = 42/89 (47%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +2
Query: 794 KNRAATCFRYTELPFRDEYAFKEAVANRXLCPV-L*MRSILLFSLQEWCLL*PLLYSECE 970
KNRAATC RYTELPF DEYA KEAVAN+ V + + F + P C
Sbjct: 218 KNRAATCSRYTELPFADEYALKEAVANKGPVSVAIDAKHSSFFFYRSGVYYDP----SCT 273
Query: 971 SGCTSGRLXVPXW----EDYWLVKNSWGL 1045
G L V +DYWLVKNSWGL
Sbjct: 274 QNVNHGVLVVGYGNLNGKDYWLVKNSWGL 302
>ref|NP_999467.1| cathepsin K precursor [Sus scrofa].
Length = 330
Score = 254 bits (648), Expect = 7e-68
Identities = 130/268 (48%), Positives = 170/268 (63%), Gaps = 3/268 (1%)
Frame = +3
Query: 162 VLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEH 341
V+LL + L+ + LD W+LWKKTY KQY K +E++RRLIWEKNLK + +HNLE
Sbjct: 6 VVLLLPVMSSALYPEEILDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEA 65
Query: 342 SMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPR--NVTYKSNPNQKLPDSMDWREK 515
S+G+H+Y+L MNHLGDMTSEEV+ M+ ++VP R + Y + + PDS+D+R+K
Sbjct: 66 SLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTLYIPDWEGRTPDSIDYRKK 125
Query: 516 GCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGF 695
G VT VK QG CGSCWAFS+VGALE Q+K KTG+L++LS QNLVDC +E N GC GG+
Sbjct: 126 GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE---NDGCGGGY 182
Query: 696 MTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK-LWP 872
MT AFQY+ N GIDSE +YPY D C Y+ + + G LK+ +
Sbjct: 183 MTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 242
Query: 873 IGTCVPCYRCEAFFFSLYRSGVYYDPSC 956
+G F Y GVYYD +C
Sbjct: 243 VGPVSVAIDASLTSFQFYSKGVYYDENC 270
>ref|NP_999057.1| cathepsin L1 precursor [Sus scrofa].
Length = 334
Score = 216 bits (551), Expect(2) = 2e-57
Identities = 120/274 (43%), Positives = 158/274 (57%), Gaps = 2/274 (0%)
Frame = +3
Query: 144 MKCLVWVLLLCSS-AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTV 320
MK +++ LC A A D LD W WK T+G+ Y NEE RR +WEKN+K +
Sbjct: 1 MKPSLFLTALCLGIASAAPKLDQNLDADWYKWKATHGRLYG-MNEEGWRRAVWEKNMKMI 59
Query: 321 MLHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSM 500
LHN E+S G H + + MN GDMT+EE +M+ + V ++S + +P S+
Sbjct: 60 ELHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKVFHESLVLE-VPKSV 118
Query: 501 DWREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKG 680
DWREKG VT VK QG CGSCWAFSA GALE Q+ KTG+LVSLS QNLVDCS + N+G
Sbjct: 119 DWREKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ-GNQG 177
Query: 681 CNGGFMTEAFQYIIDNNGIDSEASYPYKAVD-GKCQYDSKIELPRVSGILNFLFAMNMPL 857
CNGG M AFQY+ DN G+D+E SYPY + C Y + +G ++ +
Sbjct: 178 CNGGLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGFVDIPQREKALM 237
Query: 858 KKLWPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
K + +G F Y+SG+YYDP C+
Sbjct: 238 KAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCS 271
Score = 24.6 bits (52), Expect(2) = 2e-57
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
+W+VKNSWG
Sbjct: 296 FWIVKNSWG 304
>ref|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa].
Length = 332
Score = 212 bits (539), Expect(2) = 9e-57
Identities = 114/259 (44%), Positives = 147/259 (56%)
Frame = +3
Query: 183 AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSY 362
A A D +LD W WK T+ K Y NEE RR IWEKN+K + HN EH G HS+
Sbjct: 15 ASAAPRHDHSLDADWYKWKATHRKLYG-LNEEGRRRAIWEKNMKMIERHNWEHRQGKHSF 73
Query: 363 DLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQ 542
+ MN GDMT+EE M+ + + + + + P S+DWREKG VT VK Q
Sbjct: 74 TMAMNAFGDMTNEEFRKTMNGFQ-NQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQ 132
Query: 543 GSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYII 722
G CGSCWAFSA GALE Q+ KT +L+SLS QNLVDCS + N+GCNGG M AFQYI
Sbjct: 133 GHCGSCWAFSATGALEGQMFRKTSKLISLSEQNLVDCSWPE-GNEGCNGGLMDNAFQYIK 191
Query: 723 DNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPCYRC 902
DN G+DSE SYPY DG C+Y + +G ++ +K + +G
Sbjct: 192 DNGGLDSEESYPYFGKDGSCKYKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDA 251
Query: 903 EAFFFSLYRSGVYYDPSCT 959
F Y +G+Y++P C+
Sbjct: 252 SHESFQFYSTGIYFEPQCS 270
Score = 26.9 bits (58), Expect(2) = 9e-57
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWLVKNSWG
Sbjct: 294 YWLVKNSWG 302
>ref|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].
Length = 335
Score = 137 bits (344), Expect(2) = 4e-34
Identities = 90/255 (35%), Positives = 129/255 (50%), Gaps = 10/255 (3%)
Frame = +3
Query: 222 HWDLWKKTYGKQYKEKNEEVARRL-IWEKNLKTVMLHNLEHSMGMHSYDLGMNHLGDMTS 398
H+ W + K+Y EE RL ++ N + + HN G H++ LG+N DM+
Sbjct: 34 HFKSWMVQHQKKYSL--EEYHHRLQVFVSNWRKINAHNA----GNHTFKLGLNQFSDMSF 87
Query: 399 EEVIS--LMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKG-CVTEVKYQGSCGSCWAF 569
+E+ L S + S N + P P SMDWR+KG V+ VK QGSCGSCW F
Sbjct: 88 DEIRHKYLWSEPQNCSATKGNYLRGTGP---YPPSMDWRKKGNFVSPVKNQGSCGSCWTF 144
Query: 570 SAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEA 749
S GALE+ V + TG+++SL+ Q LVDC+ + + N GC GG ++AF+YI N GI E
Sbjct: 145 STTGALESAVAIATGKMLSLAEQQLVDCA-QNFNNHGCQGGLPSQAFEYIRYNKGIMGED 203
Query: 750 SYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPCYRCEAFFFS--- 920
+YPYK D C++ + V + N + + V Y +F F
Sbjct: 204 TYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVE------AVALYNPVSFAFEVTN 257
Query: 921 ---LYRSGVYYDPSC 956
+YR G+Y SC
Sbjct: 258 DFLMYRKGIYSSTSC 272
Score = 26.2 bits (56), Expect(2) = 4e-34
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YW+VKNSWG
Sbjct: 296 YWIVKNSWG 304
>ref|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa].
Length = 490
Score = 101 bits (251), Expect = 8e-22
Identities = 59/185 (31%), Positives = 94/185 (50%)
Frame = +3
Query: 243 TYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMS 422
TY + Y K E R ++ N+ V ++ ++ + G+ D+T EE ++
Sbjct: 199 TYNRTYDTKEEARWRMSVFANNM--VRAQKIQ-ALDTGTARYGVTKFSDLTEEEFRTIYL 255
Query: 423 CVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQVK 602
+ + R + + + P DWR+KG VT+VK QG CGSCWAFS G +E Q
Sbjct: 256 NPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWF 315
Query: 603 MKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKC 782
+K G L+SLS Q L+DC +KGC GG + A+ I G+++E Y Y+ C
Sbjct: 316 LKQGTLLSLSEQELLDCDKV---DKGCMGGLPSNAYSAIKTLGGLETEEDYSYRGHLQTC 372
Query: 783 QYDSK 797
++++
Sbjct: 373 SFNAE 377
>ref|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa].
Length = 367
Score = 92.0 bits (227), Expect = 5e-19
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 5/183 (2%)
Frame = +3
Query: 231 LWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVI 410
L++ Y + Y E R I+ +NL E +G + + G+ D+T EE
Sbjct: 44 LFQIQYNRSYSNPAEHARRLDIFAQNLAKAQRLQ-EEDLG--TAEFGVTPFSDLTEEEFG 100
Query: 411 SL----MSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREK-GCVTEVKYQGSCGSCWAFSA 575
L + PS + + +S + +P S DWR+K G ++ +K+Q C CWA +A
Sbjct: 101 QLHGHHWGAGKAPSMGIKVGSEESG--ETVPQSCDWRKKPGVISAIKHQKDCNCCWAMAA 158
Query: 576 VGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASY 755
V +EAQ +K + V LS Q ++DC GCNGGF+ +AF +++ +G+ SE Y
Sbjct: 159 VDNVEAQWAIKYHQAVQLSVQQVLDCDR---CGNGCNGGFVWDAFLTVLNTSGLASEQDY 215
Query: 756 PYK 764
PYK
Sbjct: 216 PYK 218
>ref|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus scrofa].
Length = 411
Score = 69.7 bits (169), Expect = 3e-12
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Frame = +3
Query: 399 EEVISLMSCVRVP-SQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGS------CGS 557
E I ++ +RVP ++ T+K N+ L S R + E + + CG
Sbjct: 162 ENKIGVLQSLRVPYNRRHYRDTFKGKDNELLLKSEQERTLLQLVEAWLERTPGLEPHCGG 221
Query: 558 CWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNN-G 734
CWAFS V A+E+ +K L LS Q ++DCS Y N GCNGG A ++
Sbjct: 222 CWAFSVVSAVESAYAIKGQPLEVLSVQQVIDCS---YNNYGCNGGSTLNALYWLNKTQVK 278
Query: 735 IDSEASYPYKAVDGKCQYDS 794
+ S++ YP+KA +G C Y S
Sbjct: 279 VVSDSEYPFKAQNGLCHYFS 298
>ref|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa].
Length = 463
Score = 67.0 bits (162), Expect = 2e-11
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Frame = +3
Query: 429 RVPSQWPRNVTYK-SNPNQKLPDSMDWRE---KGCVTEVKYQGSCGSCWAFSAVGALEAQ 596
R+P P +T + + LP S DWR VT V+ Q SCGSC++F+++G +EA+
Sbjct: 211 RLPRPKPAPITAEIQEKSLHLPASWDWRNVRGTNFVTPVRNQASCGSCYSFASMGMMEAR 270
Query: 597 VKMKTGRLVS--LSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAV 770
+++ T + LS Q +V CS +GC GGF + G+ EA +PY
Sbjct: 271 IRILTNNTQTPILSPQEVVSCSQYA---QGCAGGFPYLIAGKYAQDFGLVEEACFPYTGT 327
Query: 771 DGKC 782
D C
Sbjct: 328 DSPC 331
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,226,527
Number of extensions: 633185
Number of successful extensions: 1898
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1867
Number of HSP's successfully gapped: 16
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012225
(1046 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067256.2| cathepsin S preproprotein [Mus musculus]. 357 7e-99
Alignment gi|NP_031828.2| cathepsin K precursor [Mus musculus]. 253 2e-67
Alignment gi|NP_034114.1| cathepsin L1 preproprotein [Mus musculus]. 225 2e-60
Alignment gi|NP_954599.2| hypothetical protein LOC218275 [Mus musculus]. 208 1e-55
Alignment gi|NP_081620.2| cathepsin L-like 3 [Mus musculus]. 204 3e-54
Alignment gi|NP_036137.1| cathepsin J [Mus musculus]. 203 6e-54
Alignment gi|NP_067420.1| cathepsin 6 [Mus musculus]. 196 7e-52
Alignment gi|NP_064680.1| cathepsin R precursor [Mus musculus]. 196 9e-52
Alignment gi|NP_083912.2| cathepsin Q [Mus musculus]. 192 1e-50
Alignment gi|NP_062414.3| cathepsin 8 [Mus musculus]. 196 3e-50
>ref|NP_067256.2| cathepsin S preproprotein [Mus musculus].
Length = 340
Score = 357 bits (917), Expect = 7e-99
Identities = 171/281 (60%), Positives = 210/281 (74%), Gaps = 5/281 (1%)
Frame = +3
Query: 132 GSIIMKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNL 311
G ++ L W+ L+CS AM QL RDPTLD HWDLWKKT+ K+YK+KNEE RRLIWEKNL
Sbjct: 5 GHAAIRWLFWMPLVCSVAMEQLQRDPTLDYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNL 64
Query: 312 KTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLP 491
K +M+HNLE+SMGMH+Y +GMN +GDMT+EE++ M +R+P Q P+ VT++S N+ LP
Sbjct: 65 KFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEILCRMGALRIPRQSPKTVTFRSYSNRTLP 124
Query: 492 DSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCST-EKY 668
D++DWREKGCVTEVKYQGSCG+CWAFSAVGALE Q+K+KTG+L+SLSAQNLVDCS EKY
Sbjct: 125 DTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNEEKY 184
Query: 669 RNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMN 848
NKGC GG+MTEAFQYIIDN GI+++ASYPYKA D KC Y+SK S + F
Sbjct: 185 GNKGCGGGYMTEAFQYIIDNGGIEADASYPYKATDEKCHYNSKNRAATCSRYIQLPFGDE 244
Query: 849 MPLKKL----WPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
LK+ P+ + FF Y+SGVY DPSCT
Sbjct: 245 DALKEAVATKGPVSVGIDASHSSFFF---YKSGVYDDPSCT 282
Score = 53.9 bits (128), Expect = 2e-07
Identities = 39/90 (43%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +2
Query: 794 KNRAATCFRYTELPFRDEYAFKEAVANRXLCPVL*MRSILLFSLQEWCLL*PLLYSE--C 967
KNRAATC RY +LPF DE A KEAVA + V S F + +Y + C
Sbjct: 227 KNRAATCSRYIQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYK-----SGVYDDPSC 281
Query: 968 ESGCTSGRLXVPXW----EDYWLVKNSWGL 1045
G L V +DYWLVKNSWGL
Sbjct: 282 TGNVNHGVLVVGYGTLDGKDYWLVKNSWGL 311
>ref|NP_031828.2| cathepsin K precursor [Mus musculus].
Length = 329
Score = 253 bits (646), Expect = 2e-67
Identities = 128/270 (47%), Positives = 167/270 (61%), Gaps = 3/270 (1%)
Frame = +3
Query: 156 VWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNL 335
V+ LL L + LD W+LWKKT+ KQY K +E++RRLIWEKNLK + HNL
Sbjct: 3 VFKFLLLPMVSFALSPEEMLDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNL 62
Query: 336 EHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVP--SQWPRNVTYKSNPNQKLPDSMDWR 509
E S+G+H+Y+L MNHLGDMTSEEV+ M+ +R+P + + Y ++PDS+D+R
Sbjct: 63 EASLGVHTYELAMNHLGDMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYR 122
Query: 510 EKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNG 689
+KG VT VK QG CGSCWAFS+ GALE Q+K KTG+L++LS QNLVDC TE Y GC G
Sbjct: 123 KKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENY---GCGG 179
Query: 690 GFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK-L 866
G+MT AFQY+ N GIDSE +YPY D C Y++ + + G LK+ +
Sbjct: 180 GYMTTAFQYVQQNGGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAV 239
Query: 867 WPIGTCVPCYRCEAFFFSLYRSGVYYDPSC 956
+G F Y GVYYD +C
Sbjct: 240 ARVGPISVSIDASLASFQFYSRGVYYDENC 269
>ref|NP_034114.1| cathepsin L1 preproprotein [Mus musculus].
Length = 334
Score = 225 bits (573), Expect(2) = 2e-60
Identities = 118/273 (43%), Positives = 163/273 (59%), Gaps = 1/273 (0%)
Frame = +3
Query: 144 MKCLVWVLLLC-SSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTV 320
M L+ + +LC +A+A D T W WK T+ + Y NEE RR IWEKN++ +
Sbjct: 1 MNLLLLLAVLCLGTALATPKFDQTFSAEWHQWKSTHRRLYGT-NEEEWRRAIWEKNMRMI 59
Query: 321 MLHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSM 500
LHN E+S G H + + MN GDMT+EE +++ R + + ++ K+P S+
Sbjct: 60 QLHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYR-HQKHKKGRLFQEPLMLKIPKSV 118
Query: 501 DWREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKG 680
DWREKGCVT VK QG CGSCWAFSA G LE Q+ +KTG+L+SLS QNLVDCS N+G
Sbjct: 119 DWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCS-HAQGNQG 177
Query: 681 CNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLK 860
CNGG M AFQYI +N G+DSE SYPY+A DG C+Y ++ + +G ++ +K
Sbjct: 178 CNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDIPQQEKALMK 237
Query: 861 KLWPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
+ +G Y SG+YY+P+C+
Sbjct: 238 AVATVGPISVAMDASHPSLQFYSSGIYYEPNCS 270
Score = 26.9 bits (58), Expect(2) = 2e-60
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWLVKNSWG
Sbjct: 295 YWLVKNSWG 303
>ref|NP_954599.2| hypothetical protein LOC218275 [Mus musculus].
Length = 330
Score = 208 bits (530), Expect(2) = 1e-55
Identities = 108/253 (42%), Positives = 148/253 (58%), Gaps = 1/253 (0%)
Frame = +3
Query: 204 DPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHL 383
DP+LD W+ WK + K Y NEE +R +WE N+K + LHN ++ G H ++L MN
Sbjct: 22 DPSLDAVWEEWKTKHRKTYN-MNEEAQKRAVWENNMKMIGLHNEDYLKGKHGFNLEMNAF 80
Query: 384 GDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQ-KLPDSMDWREKGCVTEVKYQGSCGSC 560
GD+T+ E LM+ + S + +T P +P S+DWR+ G VT VK QG CGSC
Sbjct: 81 GDLTNTEFRELMTGFQ--SMGHKEMTIFQEPLLGDVPKSVDWRDHGYVTPVKDQGHCGSC 138
Query: 561 WAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGID 740
WAFSAVG+LE Q+ KTG+LV LS QNL+DCS Y N GCNGG M AFQY+ +N G+D
Sbjct: 139 WAFSAVGSLEGQIFRKTGKLVPLSEQNLMDCSW-SYGNVGCNGGLMELAFQYVKENRGLD 197
Query: 741 SEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPCYRCEAFFFS 920
+ SY Y+A DG C+YD K ++G + + + + + +G F
Sbjct: 198 TRESYAYEAWDGPCRYDPKYSAVNITGFVKVPLSEDALMNAVASVGPVSVGIDTHHHSFR 257
Query: 921 LYRSGVYYDPSCT 959
YR G YY+P C+
Sbjct: 258 FYRGGTYYEPDCS 270
Score = 26.9 bits (58), Expect(2) = 1e-55
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWLVKNSWG
Sbjct: 292 YWLVKNSWG 300
>ref|NP_081620.2| cathepsin L-like 3 [Mus musculus].
Length = 331
Score = 204 bits (518), Expect(2) = 3e-54
Identities = 104/252 (41%), Positives = 150/252 (59%)
Frame = +3
Query: 204 DPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHL 383
+P+LD W+ WK + K Y N+E +R +WE N K + LHN ++ G H + L MN
Sbjct: 22 NPSLDAVWEEWKTKHKKTYN-MNDEGQKRAVWENNKKMIDLHNEDYLKGKHGFSLEMNAF 80
Query: 384 GDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCW 563
GD+T+ E LM+ + ++ +P S+DWR+ G VT VK QGSCGSCW
Sbjct: 81 GDLTNTEFRELMTGFQGQKTKMMMKVFQEPLLGDVPKSVDWRDHGYVTPVKDQGSCGSCW 140
Query: 564 AFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDS 743
AFSAVG+LE Q+ KTG+LV LS QNLVDCS + N+GC+GG AFQY+ DN G+D+
Sbjct: 141 AFSAVGSLEGQMFRKTGKLVPLSVQNLVDCSWSQ-GNQGCDGGLPDLAFQYVKDNGGLDT 199
Query: 744 EASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPCYRCEAFFFSL 923
SYPY+A++G C+Y+ K V+G +N + + +K + +G + F
Sbjct: 200 SVSYPYEALNGTCRYNPKNSAATVTGFVNVQSSEDALMKAVATVGPISVGIDTKHKSFQF 259
Query: 924 YRSGVYYDPSCT 959
Y+ G+YY+P C+
Sbjct: 260 YKEGMYYEPDCS 271
Score = 26.9 bits (58), Expect(2) = 3e-54
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWLVKNSWG
Sbjct: 293 YWLVKNSWG 301
>ref|NP_036137.1| cathepsin J [Mus musculus].
Length = 333
Score = 203 bits (516), Expect(2) = 6e-54
Identities = 109/276 (39%), Positives = 158/276 (57%), Gaps = 8/276 (2%)
Frame = +3
Query: 156 VWVLLLCSSAM--AQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLH 329
V +L+LC AQ H DP LD W WK Y K Y EE RR +WE+N++ + LH
Sbjct: 5 VLLLILCFGVASGAQAH-DPKLDAEWKDWKTKYAKSYSP--EEALRRAVWEENMRMIKLH 61
Query: 330 NLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWR 509
N E+S+G +++ + MN GD TSEE + + +P+ + +++ + LPD DWR
Sbjct: 62 NKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMT-DPHAQNHVSIGLPDYKDWR 120
Query: 510 EKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNG 689
E+G VT V+ QG CGSCWAF+A GA+E Q+ KTG L LS QNL+DCS + NKGC
Sbjct: 121 EEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCS-KTVGNKGCQS 179
Query: 690 GFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKKLW 869
G +AF+Y++ N G+++EA+YPY+ DG C+Y S+ + N +N+P +L+
Sbjct: 180 GTAHQAFEYVLKNKGLEAEATYPYEGKDGPCRYRSE------NASANITDYVNLPPNELY 233
Query: 870 ------PIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
IG F Y G+YY+P+C+
Sbjct: 234 LWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCS 269
Score = 26.9 bits (58), Expect(2) = 6e-54
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +2
Query: 1013 DYWLVKNSWG 1042
+YWL+KNSWG
Sbjct: 293 NYWLIKNSWG 302
>ref|NP_067420.1| cathepsin 6 [Mus musculus].
Length = 334
Score = 196 bits (499), Expect(2) = 7e-52
Identities = 102/284 (35%), Positives = 159/284 (55%)
Frame = +3
Query: 108 ILCIGAPAGSIIMKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVAR 287
ILC+G +G++ + DP L+ W WKK Y K Y + EE R
Sbjct: 9 ILCLGVGSGALAL-------------------DPNLNAEWHDWKKQYEKSYTME-EEGLR 48
Query: 288 RLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYK 467
R IWE+N++ + LHN E+S+G +++ L MN GD+T EE+ +M+ + S R + K
Sbjct: 49 RAIWEENMRMIKLHNWENSLGKNNFTLKMNEFGDLTPEELRKMMNNFPIWSHKKRKIIRK 108
Query: 468 SNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLV 647
LP +DWR+KG VT V+ Q C SCWAF+ GA+E Q+ KTG+L LS QNLV
Sbjct: 109 RAVGDVLPKFVDWRKKGYVTRVRRQKFCNSCWAFAVNGAIEGQMFKKTGKLTPLSVQNLV 168
Query: 648 DCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGIL 827
DC T+ N GC G A++Y+++N G+++EA+YPY+ +G C+Y+ K ++G +
Sbjct: 169 DC-TKTQGNDGCQWGDPYIAYEYVLNNGGLEAEATYPYEGKEGPCRYNPKNSKAEITGFV 227
Query: 828 NFLFAMNMPLKKLWPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
+ + ++ ++ + IG FS Y G+Y+ P+C+
Sbjct: 228 SLPESEDILMEAVATIGPISAAVDASFNRFSFYDGGIYHQPNCS 271
Score = 26.6 bits (57), Expect(2) = 7e-52
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWL+KNSWG
Sbjct: 296 YWLIKNSWG 304
>ref|NP_064680.1| cathepsin R precursor [Mus musculus].
Length = 334
Score = 196 bits (498), Expect(2) = 9e-52
Identities = 97/252 (38%), Positives = 145/252 (57%)
Frame = +3
Query: 204 DPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHL 383
D +LD W WK Y K Y K E++ +R++WE+ LK + LHN E+S+G + + + MN
Sbjct: 22 DSSLDAEWQDWKIKYNKSYSLKEEKL-KRVVWEEKLKMIKLHNRENSLGKNGFTMKMNEF 80
Query: 384 GDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCW 563
GD T EE +M + V + K LP +DWR+KG VT V+ QG C +CW
Sbjct: 81 GDQTDEEFRKMMIEISVWTHREGKSIMKREAGSILPKFVDWRKKGYVTPVRRQGDCDACW 140
Query: 564 AFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDS 743
AF+ GA+EAQ +TG+L LS QNLVDCS + N GC GG AFQY++ N G++S
Sbjct: 141 AFAVTGAIEAQAIWQTGKLTPLSVQNLVDCS-KPQGNNGCLGGDTYNAFQYVLHNGGLES 199
Query: 744 EASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPCYRCEAFFFSL 923
EA+YPY+ DG C+Y+ K ++G ++ + ++ + + IG F
Sbjct: 200 EATYPYEGKDGPCRYNPKNSKAEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKN 259
Query: 924 YRSGVYYDPSCT 959
Y+ G+Y++P+C+
Sbjct: 260 YKGGIYHEPNCS 271
Score = 26.6 bits (57), Expect(2) = 9e-52
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWL+KNSWG
Sbjct: 296 YWLIKNSWG 304
>ref|NP_083912.2| cathepsin Q [Mus musculus].
Length = 343
Score = 192 bits (487), Expect(2) = 1e-50
Identities = 100/278 (35%), Positives = 160/278 (57%), Gaps = 11/278 (3%)
Frame = +3
Query: 159 WVLLLCSSAMAQLHR-DPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNL 335
++++LC ++ + DP+LD W W ++ K Y + EEV RR IWE+N+K + LHN
Sbjct: 6 FLVILCLGILSGVSAFDPSLDVEWKEWMGSFEKLYSPE-EEVLRRAIWEENVKRIKLHNR 64
Query: 336 EHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYK---SNPNQK------- 485
E+S+G ++Y +G+N DMT EE ++++ +P R +K +P K
Sbjct: 65 ENSLGKNTYTMGLNGFADMTDEEFMNIVIGATLPVDNTRKSLWKRALGSPFPKSWYWKDA 124
Query: 486 LPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEK 665
LP +DWR +G VT V+ Q +C SCWAF GA+E Q+ KTG+L+ LS QNLVDCS +
Sbjct: 125 LPKFVDWRNEGYVTRVRNQRNCNSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLVDCSRPQ 184
Query: 666 YRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAM 845
N+GC G FQY++ N G++++A+YPY+ +G C+Y+ K +++G + +
Sbjct: 185 -GNRGCRWGNTYNGFQYVLHNGGLEAQATYPYEGKEGLCRYNPKNSAAKITGFVVLPESE 243
Query: 846 NMPLKKLWPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
++ + + G + F Y GVYY+P+CT
Sbjct: 244 DVLMDAVATKGPIATGIHVVSSSFRFYDGGVYYEPNCT 281
Score = 26.9 bits (58), Expect(2) = 1e-50
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +2
Query: 1013 DYWLVKNSWG 1042
+YWL+KNSWG
Sbjct: 304 NYWLIKNSWG 313
>ref|NP_062414.3| cathepsin 8 [Mus musculus].
Length = 333
Score = 196 bits (497), Expect = 3e-50
Identities = 104/259 (40%), Positives = 149/259 (57%), Gaps = 7/259 (2%)
Frame = +3
Query: 204 DPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHL 383
DP+LD W WK+ + K Y + EE +R +WE+N+K V HN+E+ G ++ + +N
Sbjct: 22 DPSLDSEWQEWKRKFNKNYSME-EEGQKRAVWEENMKLVKQHNIEYDQGKKNFTMDVNAF 80
Query: 384 GDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQK----LPDSMDWREKGCVTEVKYQGSC 551
GDMT EE +++ + VP N K + +Q LP +DWR++GCVT VK QG+C
Sbjct: 81 GDMTGEEYRKMLTDIPVP-----NFRKKKSIHQPIAGYLPKFVDWRKRGCVTPVKNQGTC 135
Query: 552 GSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNN 731
SCWAFSA GA+E Q+ KTG+LV LS QNLVDCS + N GC G A +Y+ N
Sbjct: 136 NSCWAFSAAGAIEGQMFRKTGKLVPLSTQNLVDCSRLE-GNFGCFKGSTFLALKYVWKNR 194
Query: 732 GIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPC---YRC 902
G+++E++YPYK DG C+Y + R++ +F F N + + T P
Sbjct: 195 GLEAESTYPYKGTDGHCRYHPERSAARIT---SFSFVSNSEKDLMRAVATIGPISVGIDA 251
Query: 903 EAFFFSLYRSGVYYDPSCT 959
F LYR G+YY+P C+
Sbjct: 252 RHKSFRLYREGIYYEPKCS 270
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,636,064
Number of extensions: 877534
Number of successful extensions: 2700
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2612
Number of HSP's successfully gapped: 39
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012225
(1046 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapie... 425 e-119
Alignment gi|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sa... 312 3e-85
Alignment gi|NP_000387.1| cathepsin K preproprotein [Homo sapiens]. 252 5e-67
Alignment gi|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens]. 217 5e-58
Alignment gi|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens]. 217 5e-58
Alignment gi|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens]. 216 8e-58
Alignment gi|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens]. 216 8e-58
Alignment gi|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens]. 133 9e-33
Alignment gi|NP_003784.2| cathepsin F precursor [Homo sapiens]. 98 1e-20
Alignment gi|NP_001325.1| cathepsin O preproprotein [Homo sapiens]. 96 5e-20
>ref|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapiens].
Length = 331
Score = 425 bits (1093), Expect = e-119
Identities = 210/276 (76%), Positives = 229/276 (82%), Gaps = 4/276 (1%)
Frame = +3
Query: 144 MKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVM 323
MK LV VLL+CSSA+AQLH+DPTLD HW LWKKTYGKQYKEKNEE RRLIWEKNLK VM
Sbjct: 1 MKRLVCVLLVCSSAVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVM 60
Query: 324 LHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMD 503
LHNLEHSMGMHSYDLGMNHLGDMTSEEV+SLMS +RVPSQW RN+TYKSNPN+ LPDS+D
Sbjct: 61 LHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNRILPDSVD 120
Query: 504 WREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGC 683
WREKGCVTEVKYQGSCG+CWAFSAVGALEAQ+K+KTG+LVSLSAQNLVDCSTEKY NKGC
Sbjct: 121 WREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGC 180
Query: 684 NGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK 863
NGGFMT AFQYIIDN GIDS+ASYPYKA+D KCQYDSK S + LK+
Sbjct: 181 NGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKE 240
Query: 864 L----WPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
P+ V R +FF LYRSGVYY+PSCT
Sbjct: 241 AVANKGPVSVGVDA-RHPSFF--LYRSGVYYEPSCT 273
Score = 48.9 bits (115), Expect = 8e-06
Identities = 35/88 (39%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +2
Query: 794 KNRAATCFRYTELPFRDEYAFKEAVANRXLCPV-L*MRSILLFSLQEWCLL*PLLYSECE 970
K RAATC +YTELP+ E KEAVAN+ V + R F + P C
Sbjct: 218 KYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP----SCT 273
Query: 971 SGCTSGRLXVPXWE----DYWLVKNSWG 1042
G L V + +YWLVKNSWG
Sbjct: 274 QNVNHGVLVVGYGDLNGKEYWLVKNSWG 301
>ref|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sapiens].
Length = 281
Score = 312 bits (800), Expect = 3e-85
Identities = 168/276 (60%), Positives = 182/276 (65%), Gaps = 4/276 (1%)
Frame = +3
Query: 144 MKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVM 323
MK LV VLL+CSSA+AQLH+DPTLD HW LWKKTYGKQYKEKNEE RRLIWEKNLK VM
Sbjct: 1 MKRLVCVLLVCSSAVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVM 60
Query: 324 LHNLEHSMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMD 503
LHNLEHSMGMHSYDLGMNHLGDM
Sbjct: 61 LHNLEHSMGMHSYDLGMNHLGDM------------------------------------- 83
Query: 504 WREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGC 683
GSCG+CWAFSAVGALEAQ+K+KTG+LVSLSAQNLVDCSTEKY NKGC
Sbjct: 84 -------------GSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGC 130
Query: 684 NGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK 863
NGGFMT AFQYIIDN GIDS+ASYPYKA+D KCQYDSK S + LK+
Sbjct: 131 NGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKE 190
Query: 864 L----WPIGTCVPCYRCEAFFFSLYRSGVYYDPSCT 959
P+ V R +FF LYRSGVYY+PSCT
Sbjct: 191 AVANKGPVSVGVDA-RHPSFF--LYRSGVYYEPSCT 223
Score = 48.9 bits (115), Expect = 8e-06
Identities = 35/88 (39%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +2
Query: 794 KNRAATCFRYTELPFRDEYAFKEAVANRXLCPV-L*MRSILLFSLQEWCLL*PLLYSECE 970
K RAATC +YTELP+ E KEAVAN+ V + R F + P C
Sbjct: 168 KYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP----SCT 223
Query: 971 SGCTSGRLXVPXWE----DYWLVKNSWG 1042
G L V + +YWLVKNSWG
Sbjct: 224 QNVNHGVLVVGYGDLNGKEYWLVKNSWG 251
>ref|NP_000387.1| cathepsin K preproprotein [Homo sapiens].
Length = 329
Score = 252 bits (643), Expect = 5e-67
Identities = 132/268 (49%), Positives = 171/268 (63%), Gaps = 3/268 (1%)
Frame = +3
Query: 162 VLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEH 341
VLLL + A L+ + LD HW+LWKKT+ KQY K +E++RRLIWEKNLK + +HNLE
Sbjct: 6 VLLLPVVSFA-LYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEA 64
Query: 342 SMGMHSYDLGMNHLGDMTSEEVISLMSCVRVPSQWPR--NVTYKSNPNQKLPDSMDWREK 515
S+G+H+Y+L MNHLGDMTSEEV+ M+ ++VP R + Y + PDS+D+R+K
Sbjct: 65 SLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKK 124
Query: 516 GCVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGF 695
G VT VK QG CGSCWAFS+VGALE Q+K KTG+L++LS QNLVDC +E N GC GG+
Sbjct: 125 GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE---NDGCGGGY 181
Query: 696 MTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKK-LWP 872
MT AFQY+ N GIDSE +YPY + C Y+ + + G LK+ +
Sbjct: 182 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVAR 241
Query: 873 IGTCVPCYRCEAFFFSLYRSGVYYDPSC 956
+G F Y GVYYD SC
Sbjct: 242 VGPVSVAIDASLTSFQFYSKGVYYDESC 269
>ref|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens].
Length = 333
Score = 217 bits (552), Expect(2) = 5e-58
Identities = 116/260 (44%), Positives = 155/260 (59%), Gaps = 1/260 (0%)
Frame = +3
Query: 183 AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSY 362
A A L D +L+ W WK + + Y NEE RR +WEKN+K + LHN E+ G HS+
Sbjct: 15 ASATLTFDHSLEAQWTKWKAMHNRLYG-MNEEGWRRAVWEKNMKMIELHNQEYREGKHSF 73
Query: 363 DLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPN-QKLPDSMDWREKGCVTEVKY 539
+ MN GDMTSEE +M+ + ++ PR P + P S+DWREKG VT VK
Sbjct: 74 TMAMNAFGDMTSEEFRQVMNGFQ--NRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKN 131
Query: 540 QGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYI 719
QG CGSCWAFSA GALE Q+ KTGRL+SLS QNLVDCS + N+GCNGG M AFQY+
Sbjct: 132 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYV 190
Query: 720 IDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPCYR 899
DN G+DSE SYPY+A + C+Y+ K + +G ++ +K + +G
Sbjct: 191 QDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 250
Query: 900 CEAFFFSLYRSGVYYDPSCT 959
F Y+ G+Y++P C+
Sbjct: 251 AGHESFLFYKEGIYFEPDCS 270
Score = 26.9 bits (58), Expect(2) = 5e-58
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWLVKNSWG
Sbjct: 295 YWLVKNSWG 303
>ref|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens].
Length = 333
Score = 217 bits (552), Expect(2) = 5e-58
Identities = 116/260 (44%), Positives = 155/260 (59%), Gaps = 1/260 (0%)
Frame = +3
Query: 183 AMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSY 362
A A L D +L+ W WK + + Y NEE RR +WEKN+K + LHN E+ G HS+
Sbjct: 15 ASATLTFDHSLEAQWTKWKAMHNRLYG-MNEEGWRRAVWEKNMKMIELHNQEYREGKHSF 73
Query: 363 DLGMNHLGDMTSEEVISLMSCVRVPSQWPRNVTYKSNPN-QKLPDSMDWREKGCVTEVKY 539
+ MN GDMTSEE +M+ + ++ PR P + P S+DWREKG VT VK
Sbjct: 74 TMAMNAFGDMTSEEFRQVMNGFQ--NRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKN 131
Query: 540 QGSCGSCWAFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYI 719
QG CGSCWAFSA GALE Q+ KTGRL+SLS QNLVDCS + N+GCNGG M AFQY+
Sbjct: 132 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYV 190
Query: 720 IDNNGIDSEASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMPLKKLWPIGTCVPCYR 899
DN G+DSE SYPY+A + C+Y+ K + +G ++ +K + +G
Sbjct: 191 QDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 250
Query: 900 CEAFFFSLYRSGVYYDPSCT 959
F Y+ G+Y++P C+
Sbjct: 251 AGHESFLFYKEGIYFEPDCS 270
Score = 26.9 bits (58), Expect(2) = 5e-58
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWLVKNSWG
Sbjct: 295 YWLVKNSWG 303
>ref|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens].
Length = 334
Score = 216 bits (550), Expect(2) = 8e-58
Identities = 116/258 (44%), Positives = 153/258 (59%), Gaps = 6/258 (2%)
Frame = +3
Query: 204 DPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHL 383
D LD W WK T+ + Y NEE RR +WEKN+K + LHN E+S G H + + MN
Sbjct: 22 DQNLDTKWYQWKATHRRLYGA-NEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAF 80
Query: 384 GDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCW 563
GDMT+EE +M C R ++ + ++ LP S+DWR+KG VT VK Q CGSCW
Sbjct: 81 GDMTNEEFRQMMGCFR-NQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCW 139
Query: 564 AFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDS 743
AFSA GALE Q+ KTG+LVSLS QNLVDCS + N+GCNGGFM AFQY+ +N G+DS
Sbjct: 140 AFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ-GNQGCNGGFMARAFQYVKENGGLDS 198
Query: 744 EASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMP------LKKLWPIGTCVPCYRCE 905
E SYPY AVD C+Y + + +G F + P +K + +G
Sbjct: 199 EESYPYVAVDEICKYRPENSVANDTG-----FTVVAPGKEKALMKAVATVGPISVAMDAG 253
Query: 906 AFFFSLYRSGVYYDPSCT 959
F Y+SG+Y++P C+
Sbjct: 254 HSSFQFYKSGIYFEPDCS 271
Score = 26.9 bits (58), Expect(2) = 8e-58
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWLVKNSWG
Sbjct: 296 YWLVKNSWG 304
>ref|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens].
Length = 334
Score = 216 bits (550), Expect(2) = 8e-58
Identities = 116/258 (44%), Positives = 153/258 (59%), Gaps = 6/258 (2%)
Frame = +3
Query: 204 DPTLDRHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVMLHNLEHSMGMHSYDLGMNHL 383
D LD W WK T+ + Y NEE RR +WEKN+K + LHN E+S G H + + MN
Sbjct: 22 DQNLDTKWYQWKATHRRLYGA-NEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAF 80
Query: 384 GDMTSEEVISLMSCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCW 563
GDMT+EE +M C R ++ + ++ LP S+DWR+KG VT VK Q CGSCW
Sbjct: 81 GDMTNEEFRQMMGCFR-NQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCW 139
Query: 564 AFSAVGALEAQVKMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDS 743
AFSA GALE Q+ KTG+LVSLS QNLVDCS + N+GCNGGFM AFQY+ +N G+DS
Sbjct: 140 AFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ-GNQGCNGGFMARAFQYVKENGGLDS 198
Query: 744 EASYPYKAVDGKCQYDSKIELPRVSGILNFLFAMNMP------LKKLWPIGTCVPCYRCE 905
E SYPY AVD C+Y + + +G F + P +K + +G
Sbjct: 199 EESYPYVAVDEICKYRPENSVANDTG-----FTVVAPGKEKALMKAVATVGPISVAMDAG 253
Query: 906 AFFFSLYRSGVYYDPSCT 959
F Y+SG+Y++P C+
Sbjct: 254 HSSFQFYKSGIYFEPDCS 271
Score = 26.9 bits (58), Expect(2) = 8e-58
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YWLVKNSWG
Sbjct: 296 YWLVKNSWG 304
>ref|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens].
Length = 335
Score = 133 bits (334), Expect(2) = 9e-33
Identities = 93/293 (31%), Positives = 141/293 (48%), Gaps = 10/293 (3%)
Frame = +3
Query: 108 ILCIGAPAGSIIMKCLVWVLLLCSSAMAQLHRDPTLDRHWDLWKKTYGKQYKEKNEEVAR 287
+LC GA W+L + A+L + H+ W + K Y EE
Sbjct: 7 LLCAGA-----------WLLGVPVCGAAELCVNSLEKFHFKSWMSKHRKTYS--TEEYHH 53
Query: 288 RL-IWEKNLKTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVIS--LMSCVRVPSQWPRNV 458
RL + N + + HN G H++ + +N DM+ E+ L S + S N
Sbjct: 54 RLQTFASNWRKINAHN----NGNHTFKMALNQFSDMSFAEIKHKYLWSEPQNCSATKSNY 109
Query: 459 TYKSNPNQKLPDSMDWREKG-CVTEVKYQGSCGSCWAFSAVGALEAQVKMKTGRLVSLSA 635
+ P P S+DWR+KG V+ VK QG+CGSCW FS GALE+ + + TG+++SL+
Sbjct: 110 LRGTGP---YPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAE 166
Query: 636 QNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGKCQYDSKIELPRV 815
Q LVDC+ + + N GC GG ++AF+YI+ N GI E +YPY+ DG C++ + V
Sbjct: 167 QQLVDCA-QDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYCKFQPGKAIGFV 225
Query: 816 SGILNFLFAMNMPLKKLWPIGTCVPCYRCEAFFFS------LYRSGVYYDPSC 956
+ N + + V Y +F F +YR+G+Y SC
Sbjct: 226 KDVANITIYDEEAMVE------AVALYNPVSFAFEVTQDFMMYRTGIYSSTSC 272
Score = 26.2 bits (56), Expect(2) = 9e-33
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2
Query: 1016 YWLVKNSWG 1042
YW+VKNSWG
Sbjct: 296 YWIVKNSWG 304
>ref|NP_003784.2| cathepsin F precursor [Homo sapiens].
Length = 484
Score = 97.8 bits (242), Expect = 1e-20
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
Frame = +3
Query: 243 TYGKQYKEKNEEVARRLIWEKNL-KTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVISLM 419
TY + Y+ K E R ++ N+ + + L+ + G+ D+T EE ++
Sbjct: 193 TYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQY----GVTKFSDLTEEEFRTIY 248
Query: 420 SCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQV 599
+ + + + P DWR KG VT+VK QG CGSCWAFS G +E Q
Sbjct: 249 LNTLLRKEPGNKMKQAKSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 308
Query: 600 KMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGK 779
+ G L+SLS Q L+DC +K C GG + A+ I + G+++E Y Y+
Sbjct: 309 FLNQGTLLSLSEQELLDCDK---MDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQS 365
Query: 780 CQYDSK 797
C + ++
Sbjct: 366 CNFSAE 371
>ref|NP_001325.1| cathepsin O preproprotein [Homo sapiens].
Length = 321
Score = 95.9 bits (237), Expect = 5e-20
Identities = 52/123 (42%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Frame = +3
Query: 435 PSQWPRNVT--YKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQVKMK 608
PS++PR + S PN LP DWR+K VT+V+ Q CG CWAFS VGA+E+ +K
Sbjct: 89 PSKFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAYAIK 148
Query: 609 TGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNN-GIDSEASYPYKAVDGKCQ 785
L LS Q ++DCS Y N GCNGG A ++ + ++ YP+KA +G C
Sbjct: 149 GKPLEDLSVQQVIDCS---YNNYGCNGGSTLNALNWLNKMQVKLVKDSEYPFKAQNGLCH 205
Query: 786 YDS 794
Y S
Sbjct: 206 YFS 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,485,876
Number of extensions: 1019906
Number of successful extensions: 3126
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3086
Number of HSP's successfully gapped: 30
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012225
(1046 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 458 e-126
>Sscrofa_Chr04
|| Length = 143465943
Score = 458 bits (231), Expect = e-126
Identities = 231/231 (100%)
Strand = Plus / Plus
Query: 541 agggttcttgtggttcttgttgggctttcagcgctgtgggagctctggaagcacaagtga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107674018 agggttcttgtggttcttgttgggctttcagcgctgtgggagctctggaagcacaagtga 107674077
Query: 601 agatgaaaacaggaaggctggtgtctctgagtgcacagaacctggtggattgctcaactg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107674078 agatgaaaacaggaaggctggtgtctctgagtgcacagaacctggtggattgctcaactg 107674137
Query: 661 aaaaatacaggaataaaggctgcaatggcggcttcatgacagaggctttccaatatatca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107674138 aaaaatacaggaataaaggctgcaatggcggcttcatgacagaggctttccaatatatca 107674197
Query: 721 ttgataacaacggcatcgattcagaagcctcctatccctacaaagccgtgg 771
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107674198 ttgataacaacggcatcgattcagaagcctcctatccctacaaagccgtgg 107674248
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 392 gaccagtgaagaagtgatatcattgatgagttgcgtgagagttcccagccaatggccgag 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107671672 gaccagtgaagaagtgatatcattgatgagttgcgtgagagttcccagccaatggccgag 107671731
Query: 452 aaatgtcacttacaagtcaaaccctaatcagaaattgcctgattctatggactggagaga 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107671732 aaatgtcacttacaagtcaaaccctaatcagaaattgcctgattctatggactggagaga 107671791
Query: 512 gaaggggtgtgttactgaagtgaaataccagg 543
||||||||||||||||||||||||||||||||
Sbjct: 107671792 gaaggggtgtgttactgaagtgaaataccagg 107671823
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 1 ctcattgtggatacctcatgtgacaagttccaatttctttttaaagtctctttaactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107666257 ctcattgtggatacctcatgtgacaagttccaatttctttttaaagtctctttaactgaa 107666316
Query: 61 gtctctttgctgcctttggaatctttggagagagcccactgtcacgcattctttgtatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107666317 gtctctttgctgcctttggaatctttggagagagcccactgtcacgcattctttgtatag 107666376
Query: 121 gagcacctgctggttctatcat 142
||||||||||||||||||||||
Sbjct: 107666377 gagcacctgctggttctatcat 107666398
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 143 aatgaaatgcctggtttgggtgctcctcctgtgctcctcagcgatggcacagctgcacag 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107667386 aatgaaatgcctggtttgggtgctcctcctgtgctcctcagcgatggcacagctgcacag 107667445
Query: 203 agaccccaccttggatcgtcactgggatctctggaagaaaacctatggaaaacaatacaa 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107667446 agaccccaccttggatcgtcactgggatctctggaagaaaacctatggaaaacaatacaa 107667505
Query: 263 ggaaaag 269
|||||||
Sbjct: 107667506 ggaaaag 107667512
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 268 agaatgaggaagtagcacggcgtctcatctgggaaaagaacctaaaaactgtaatgcttc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107670741 agaatgaggaagtagcacggcgtctcatctgggaaaagaacctaaaaactgtaatgcttc 107670800
Query: 328 acaatctggagcattcgatgggaatgcattcatatgatctaggcatgaaccacctgggag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107670801 acaatctggagcattcgatgggaatgcattcatatgatctaggcatgaaccacctgggag 107670860
Query: 388 acatg 392
|||||
Sbjct: 107670861 acatg 107670865
Score = 194 bits (98), Expect = 7e-47
Identities = 154/169 (91%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 770 ggatggaaaatgccagtatgactcaaaa-atcgagctgccacgtgtttcaggtatactga 828
||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 107675987 ggatggaaaatgcaagtatgactcaaaaaatcgagctgccacgtgttcaaggtatactga 107676046
Query: 829 acttccttttcgcgatgaatatgcctttaaagaagctgtggccaat-aggnacctgtgtc 887
||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||
Sbjct: 107676047 acttcctttcgccgatgaatatgccttaaaagaagctgtggccaataagggacctgtgtc 107676106
Query: 888 ccgtgctatagatgcgaagcattcttcttttctc-tctacaggagtggt 935
| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 107676107 cgttgctatagatgcgaagcattcttctttcttcttctacaggagtggt 107676155
Score = 147 bits (74), Expect = 1e-32
Identities = 97/104 (93%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 933 ggtgtctactatgacccctcctgtactcagaatgtgaatcagggtgtactagtggtcggc 992
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 107677452 ggtgtctactatgacccctcctgtactcagaatgtgaatcatggtgtactagtggtcggc 107677511
Query: 993 tacnggtaccttnatgg-gaagactactggcttgtgaaaaacag 1035
||| | ||||| |||| |||||||||||||||||||||||||
Sbjct: 107677512 tacggtaaccttaatggaaaagactactggcttgtgaaaaacag 107677555
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,532,937
Number of extensions: 284
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 7
Length of query: 1046
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1025
Effective length of database: 2,808,413,156
Effective search space: 2878623484900
Effective search space used: 2878623484900
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)