Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012239
(734 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_862327.1| PREDICTED: similar to ribosomal protein S8 isof... 428 e-120
Alignment gi|XP_532605.1| PREDICTED: similar to ribosomal protein S8 isof... 428 e-120
Alignment gi|XP_862274.1| PREDICTED: similar to ribosomal protein S8 isof... 421 e-118
Alignment gi|XP_862244.1| PREDICTED: similar to ribosomal protein S8 isof... 410 e-115
Alignment gi|XP_862219.1| PREDICTED: similar to ribosomal protein S8 isof... 409 e-114
Alignment gi|XP_862198.1| PREDICTED: similar to ribosomal protein S8 isof... 403 e-113
Alignment gi|XP_862300.1| PREDICTED: similar to ribosomal protein S8 isof... 373 e-104
Alignment gi|XP_850594.1| PREDICTED: similar to ribosomal protein S8 [Can... 260 1e-73
>ref|XP_862327.1| PREDICTED: similar to ribosomal protein S8 isoform 8 [Canis
familiaris].
Length = 208
Score = 428 bits (1101), Expect = e-120
Identities = 208/208 (100%), Positives = 208/208 (100%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>ref|XP_532605.1| PREDICTED: similar to ribosomal protein S8 isoform 1 [Canis
familiaris].
Length = 208
Score = 428 bits (1101), Expect = e-120
Identities = 208/208 (100%), Positives = 208/208 (100%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>ref|XP_862274.1| PREDICTED: similar to ribosomal protein S8 isoform 6 [Canis
familiaris].
Length = 215
Score = 421 bits (1083), Expect = e-118
Identities = 208/215 (96%), Positives = 208/215 (96%), Gaps = 7/215 (3%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LGRKKGAKL-------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 545
LGRKKGAKL TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA
Sbjct: 121 LGRKKGAKLEGSRDWDTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 180
Query: 546 CIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 650
CIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 CIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 215
>ref|XP_862244.1| PREDICTED: similar to ribosomal protein S8 isoform 5 [Canis
familiaris].
Length = 220
Score = 410 bits (1055), Expect = e-115
Identities = 206/220 (93%), Positives = 207/220 (94%), Gaps = 12/220 (5%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LGRKKGAKL------TPEE------EEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQ 530
LGRKKGAKL + EE EEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQ
Sbjct: 121 LGRKKGAKLVRMKAFSAEEGSRDWDEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQ 180
Query: 531 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 650
GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 220
>ref|XP_862219.1| PREDICTED: similar to ribosomal protein S8 isoform 4 [Canis
familiaris].
Length = 202
Score = 409 bits (1052), Expect = e-114
Identities = 202/208 (97%), Positives = 202/208 (97%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKL ILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 121 LGRKKGAKL------ILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 174
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 175 QCGRADGYVLEGKELEFYLRKIKARKGK 202
>ref|XP_862198.1| PREDICTED: similar to ribosomal protein S8 isoform 3 [Canis
familiaris].
Length = 209
Score = 403 bits (1036), Expect = e-113
Identities = 199/209 (95%), Positives = 201/209 (96%), Gaps = 1/209 (0%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LG-RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRP 563
LG +K A + EEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRP
Sbjct: 121 LGLLRKAAGIGMYREEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRP 180
Query: 564 GQCGRADGYVLEGKELEFYLRKIKARKGK 650
GQCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 GQCGRADGYVLEGKELEFYLRKIKARKGK 209
>ref|XP_862300.1| PREDICTED: similar to ribosomal protein S8 isoform 7 [Canis
familiaris].
Length = 188
Score = 373 bits (958), Expect = e-104
Identities = 188/208 (90%), Positives = 188/208 (90%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 52 -----------CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 160
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 161 QCGRADGYVLEGKELEFYLRKIKARKGK 188
>ref|XP_850594.1| PREDICTED: similar to ribosomal protein S8 [Canis familiaris].
Length = 355
Score = 260 bits (664), Expect(2) = 1e-73
Identities = 134/196 (68%), Positives = 146/196 (74%)
Frame = +3
Query: 63 KTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECC 242
+ GGK KPYH+K+K+ELGRP ANTKIGP IHT++VRGGNKKYR LRLDVGN SWGSECC
Sbjct: 163 RAGGKSKPYHEKQKHELGRPVANTKIGPHHIHTIQVRGGNKKYRVLRLDVGNLSWGSECC 222
Query: 243 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPE 422
T KTRIIDVVYNAS+NELVRTKTLVKNCIV IDST
Sbjct: 223 THKTRIIDVVYNASDNELVRTKTLVKNCIVHIDST------------------------- 257
Query: 423 EEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEG 602
++ KYDERKKN+KISSLLEEQFQQGKLLACIASRP QCGRADGYVLEG
Sbjct: 258 ------------LKGKYDERKKNSKISSLLEEQFQQGKLLACIASRPRQCGRADGYVLEG 305
Query: 603 KELEFYLRKIKARKGK 650
+ELEFYLRKIKA + K
Sbjct: 306 RELEFYLRKIKAPERK 321
Score = 35.0 bits (79), Expect(2) = 1e-73
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +1
Query: 22 ERWASLGTTGTSAARLGARESP 87
ERWASLGTT TSA R G + P
Sbjct: 149 ERWASLGTTDTSAPRAGGKSKP 170
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,166,423
Number of extensions: 807081
Number of successful extensions: 4464
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4354
Number of HSP's successfully gapped: 9
Length of query: 244
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 144
Effective length of database: 15,540,904
Effective search space: 2237890176
Effective search space used: 2237890176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-012239
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012239
(734 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020488.1| 40S ribosomal protein S8 [Bos taurus]. 428 e-120
>ref|NP_001020488.1| 40S ribosomal protein S8 [Bos taurus].
Length = 208
Score = 428 bits (1101), Expect = e-120
Identities = 208/208 (100%), Positives = 208/208 (100%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,074,518
Number of extensions: 807180
Number of successful extensions: 4174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4114
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 145
Effective length of database: 14,405,662
Effective search space: 2088820990
Effective search space used: 2088820990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012239
(734 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128108.1| PREDICTED: 40S ribosomal protein S8-like [Su... 428 e-120
>ref|XP_003128108.1| PREDICTED: 40S ribosomal protein S8-like [Sus scrofa].
Length = 208
Score = 428 bits (1101), Expect = e-120
Identities = 208/208 (100%), Positives = 208/208 (100%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,344,332
Number of extensions: 553743
Number of successful extensions: 2770
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2753
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 148
Effective length of database: 8,953,820
Effective search space: 1325165360
Effective search space used: 1325165360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012239
(734 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001474155.1| PREDICTED: 40S ribosomal protein S8-like iso... 428 e-120
Alignment gi|NP_033124.1| 40S ribosomal protein S8 [Mus musculus]. 428 e-120
Alignment gi|XP_001480960.2| PREDICTED: 40S ribosomal protein S8-like [Mu... 421 e-118
Alignment gi|XP_003086777.1| PREDICTED: 40S ribosomal protein S8-like [Mu... 407 e-114
Alignment gi|XP_003084733.1| PREDICTED: 40S ribosomal protein S8-like [Mu... 405 e-113
Alignment gi|XP_284504.1| PREDICTED: 40S ribosomal protein S8-like isofor... 404 e-113
Alignment gi|XP_003086602.1| PREDICTED: 40S ribosomal protein S8-like [Mu... 404 e-113
Alignment gi|XP_003086649.1| PREDICTED: 40S ribosomal protein S8-like, pa... 342 2e-94
>ref|XP_001474155.1| PREDICTED: 40S ribosomal protein S8-like isoform 1 [Mus musculus].
Length = 208
Score = 428 bits (1101), Expect = e-120
Identities = 208/208 (100%), Positives = 208/208 (100%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>ref|NP_033124.1| 40S ribosomal protein S8 [Mus musculus].
Length = 208
Score = 428 bits (1101), Expect = e-120
Identities = 208/208 (100%), Positives = 208/208 (100%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>ref|XP_001480960.2| PREDICTED: 40S ribosomal protein S8-like [Mus musculus].
Length = 253
Score = 421 bits (1082), Expect = e-118
Identities = 206/213 (96%), Positives = 209/213 (98%)
Frame = +3
Query: 12 SRRRAMGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKY 191
S+RRA+GI +DNWHKRRKT GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKY
Sbjct: 41 SQRRALGIFQDNWHKRRKTWGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKY 100
Query: 192 RALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYES 371
RALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYES
Sbjct: 101 RALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYES 160
Query: 372 HYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACI 551
H ALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACI
Sbjct: 161 HCALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACI 220
Query: 552 ASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 650
ASRPGQCGRADGYVLEGKELEFYL KIKARKGK
Sbjct: 221 ASRPGQCGRADGYVLEGKELEFYLWKIKARKGK 253
>ref|XP_003086777.1| PREDICTED: 40S ribosomal protein S8-like [Mus musculus].
Length = 208
Score = 407 bits (1045), Expect = e-114
Identities = 199/208 (95%), Positives = 204/208 (98%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAAN KIGPRRIHTVRV+GGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANRKIGPRRIHTVRVQGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCT KTRIIDVVYNASNNELVRTKTL+KNCIVLIDSTPYRQWY+SHYALP
Sbjct: 61 DVGNFSWGSECCTCKTRIIDVVYNASNNELVRTKTLMKNCIVLIDSTPYRQWYKSHYALP 120
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKI+KKYDER+KNAKISSLLEEQFQQGKLLA IASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIKKKYDEREKNAKISSLLEEQFQQGKLLAYIASRPG 180
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
Q GRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 QGGRADGYVLEGKELEFYLRKIKARKGK 208
>ref|XP_003084733.1| PREDICTED: 40S ribosomal protein S8-like [Mus musculus].
Length = 203
Score = 405 bits (1042), Expect = e-113
Identities = 200/208 (96%), Positives = 202/208 (97%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHK RKTGGKRKPYHKKR RPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKCRKTGGKRKPYHKKR-----RPAANTKIGPRRIHTVRVRGGNKKYRALRL 55
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNN+LVRTKTLVKNCIVLIDSTPY+QWYESHYALP
Sbjct: 56 DVGNFSWGSECCTRKTRIIDVVYNASNNKLVRTKTLVKNCIVLIDSTPYQQWYESHYALP 115
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 116 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 175
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 176 QCGRADGYVLEGKELEFYLRKIKARKGK 203
>ref|XP_284504.1| PREDICTED: 40S ribosomal protein S8-like isoform 1 [Mus musculus].
Length = 208
Score = 404 bits (1037), Expect = e-113
Identities = 197/208 (94%), Positives = 204/208 (98%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAAN KIGPRRIHTVRV+GGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANRKIGPRRIHTVRVQGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCT KTRIIDVVYNASNNELVRTKTL+KNCIVLIDSTP+RQWY+SHYALP
Sbjct: 61 DVGNFSWGSECCTCKTRIIDVVYNASNNELVRTKTLMKNCIVLIDSTPHRQWYKSHYALP 120
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKI+KKYDER+KNAKISSLLEEQFQQGKLLA IASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIKKKYDEREKNAKISSLLEEQFQQGKLLAYIASRPG 180
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
Q G+ADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 QGGKADGYVLEGKELEFYLRKIKARKGK 208
>ref|XP_003086602.1| PREDICTED: 40S ribosomal protein S8-like [Mus musculus].
Length = 203
Score = 404 bits (1037), Expect = e-113
Identities = 199/208 (95%), Positives = 201/208 (96%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHK KTGGKRKPYHKKR RPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKCHKTGGKRKPYHKKR-----RPAANTKIGPRRIHTVRVRGGNKKYRALRL 55
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNN+LVRTKTLVKNCIVLIDSTPY+QWYESHYALP
Sbjct: 56 DVGNFSWGSECCTRKTRIIDVVYNASNNKLVRTKTLVKNCIVLIDSTPYQQWYESHYALP 115
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 116 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 175
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 176 QCGRADGYVLEGKELEFYLRKIKARKGK 203
>ref|XP_003086649.1| PREDICTED: 40S ribosomal protein S8-like, partial [Mus musculus].
Length = 168
Score = 342 bits (877), Expect = 2e-94
Identities = 168/168 (100%), Positives = 168/168 (100%)
Frame = +3
Query: 147 RRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNC 326
RRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNC
Sbjct: 1 RRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNC 60
Query: 327 IVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISS 506
IVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISS
Sbjct: 61 IVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISS 120
Query: 507 LLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 650
LLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 121 LLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 168
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,176,779
Number of extensions: 665295
Number of successful extensions: 3988
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3853
Number of HSP's successfully gapped: 8
Length of query: 244
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 145
Effective length of database: 12,643,995
Effective search space: 1833379275
Effective search space used: 1833379275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012239
(734 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003.1| 40S ribosomal protein S8 [Homo sapiens]. 428 e-120
>ref|NP_001003.1| 40S ribosomal protein S8 [Homo sapiens].
Length = 208
Score = 428 bits (1101), Expect = e-120
Identities = 208/208 (100%), Positives = 208/208 (100%)
Frame = +3
Query: 27 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 206
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 207 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 386
DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 387 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 566
LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 567 QCGRADGYVLEGKELEFYLRKIKARKGK 650
QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,578,640
Number of extensions: 786906
Number of successful extensions: 4242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4157
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 144
Effective length of database: 15,000,764
Effective search space: 2160110016
Effective search space used: 2160110016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012239
(734 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 563 e-158
Sscrofa_Chr07 406 e-111
Sscrofa_Chr06 335 2e-89
Sscrofa_Chr18 256 1e-65
Sscrofa_Chr13 198 3e-48
Sscrofa_Chr10 115 3e-23
Sscrofa_Chr05 86 3e-14
>Sscrofa_Chr16
|| Length = 86898991
Score = 563 bits (284), Expect = e-158
Identities = 395/431 (91%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 6 ctttccagccggcgccgagcgatgggcatctctcgggacaactggcacaagcgccgcaag 65
|||||||||| ||||||||||||||||||||||| |||||| ||||||| || | |||||
Sbjct: 65326147 ctttccagccagcgccgagcgatgggcatctctcaggacaattggcacatgcactgcaag 65326088
Query: 66 actgggggcaagagaaagccctaccacaagaagcggaagtatgagctgggacgccccgct 125
|| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 65326087 accgggggcaagagaaagccctaccacaagaagcggaagtatgagctgagatgccccact 65326028
Query: 126 gcaaacaccaagattggccctcgccgcatacacacagtccgtgtgcggggaggtaacaag 185
||||||||||||| |||||| | ||||||||||||| |||||| ||||||||||||||
Sbjct: 65326027 gcaaacaccaagactggcccccattgcatacacacagttcgtgtgtggggaggtaacaag 65325968
Query: 186 aagtaccgggccttgaggctggacgtggggaacttctcctggggctccgagtgttgcaca 245
|||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct: 65325967 aagtactgggccttgaggctggacgtggggaacttctcttgggg--ccgagtgttgtgca 65325910
Query: 246 cgaaagacgaggattattgacgttgtgtacaacgcatccaacaatgaactggtccgtacc 305
|||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||
Sbjct: 65325909 taaaagacgaggattattgatgttgtgtacaacgcatccaacaacgaactggtccaaacc 65325850
Query: 306 aagaccctggtgaagaactgcattgtgctcattgacagcaccccgtatcgacagtggtac 365
|||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 65325849 aagatcctggtgaagaactgcattgtgctcactgacagcaccccgtactgacagtggtac 65325790
Query: 366 gagtcccactacgcgctgcccctgggtcgcaagaagggggccaagctgactcctgaggag 425
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 65325789 gagtcccactacgtgctgcccctgggccacaagaagggggccaagctgactcctgaggag 65325730
Query: 426 gaagagatttt 436
|||||||||||
Sbjct: 65325729 gaagagatttt 65325719
Score = 333 bits (168), Expect = 8e-89
Identities = 359/421 (85%), Gaps = 15/421 (3%)
Strand = Plus / Minus
Query: 30 ggcatctctcgggacaactggcacaagcgccgcaagactgggggcaagagaaagccctac 89
||||||||| ||||||| ||||||||| ||| |||||| |||| || |||||||||||||
Sbjct: 52043129 ggcatctcttgggacaagtggcacaagtgccacaagaccggggacaggagaaagccctac 52043070
Query: 90 cacaagaagcggaagtatgagctgggacgccccgctgcaaacaccaagattggccctcgc 149
|||||||| ||| |||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 52043069 cacaagaattggacatatgagctgggacgccttgctgccaacaccaagattggccccagc 52043010
Query: 150 cgcatacacacagtccgtgtgcggggaggtaacaagaagtacc-gggccttgaggctgga 208
|||||| |||||||||||||| || |||| ||||||||||||| ||||||||||||||||
Sbjct: 52043009 cgcatatacacagtccgtgtgtggagaggcaacaagaagtaccagggccttgaggctgga 52042950
Query: 209 cgtggggaacttctcctggggctccgagtgttgcacacgaaagacgaggattattgacgt 268
|||| ||||||||||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct: 52042949 tgtggagaacttctcctggggctccaagtgttgcacacacgagacgaggattattgaggt 52042890
Query: 269 tgtgtacaacgcatccaacaatgaactggtccgt------accaagaccctggtgaagaa 322
||||||||| || |||||||| ||| |||| || ||||||||||||||||||||
Sbjct: 52042889 tgtgtacaatgcctccaacaacaaaccggtctgtaccaagaccaagaccctggtgaagaa 52042830
Query: 323 ctgcattgtgctcattgacagcaccccgtatcga-------cagtggtacgagtcccact 375
|||||| ||||||| |||||||||||| || ||| |||||||||||| ||||||
Sbjct: 52042829 ctgcatcgtgctcactgacagcaccccttaccgacaggggtcagtggtacgagccccact 52042770
Query: 376 acgcgctgcccctgggtcgcaagaagggggccaagctgactcctgaggaggaagagattt 435
| || |||| | |||| ||||||| |||||| ||||||||||||||||||| ||| |||
Sbjct: 52042769 atgcactgctcatgggctgcaagaa-ggggcctagctgactcctgaggaggacgagcttt 52042711
Query: 436 t 436
|
Sbjct: 52042710 t 52042710
Score = 289 bits (146), Expect = 1e-75
Identities = 183/194 (94%), Gaps = 1/194 (0%)
Strand = Plus / Minus
Query: 499 tcagcagtctcctagaggagcagttccagcagggcaagcttcttgcgtgcatcgcctcaa 558
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 65325656 tcagcagtctcctagaggagcagttccagcagggcaagctccttgcgtgcatcgcttcaa 65325597
Query: 559 gaccaggccagtgtggccgagcagatggctacgtgctagagggcaaggagctggagttct 618
|||||||||| ||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 65325596 gaccaggccattgtggtcgagcagatggctatgtgctagaggtcaaggagctggagttct 65325537
Query: 619 atctgaggaaaatcaaggcccggaaaggcaaatgagtcct-cctcctgtcccagctcgtg 677
||||||||||||||||||||| ||||||||||||| |||| ||||||||| | |||||||
Sbjct: 65325536 atctgaggaaaatcaaggcccagaaaggcaaatgaatcctccctcctgtctcggctcgtg 65325477
Query: 678 taataaaggtgttt 691
||||||||||||||
Sbjct: 65325476 taataaaggtgttt 65325463
Score = 170 bits (86), Expect = 7e-40
Identities = 175/202 (86%), Gaps = 2/202 (0%)
Strand = Plus / Minus
Query: 499 tcagcagtctcctagaggagcagttccagcagggcaagcttcttgcgtgcatcgcctcaa 558
|||||||||||||||||||| |||||||||||||||||| |||||| |||||| | ||||
Sbjct: 52042308 tcagcagtctcctagaggagaagttccagcagggcaagcctcttgcatgcatcacttcaa 52042249
Query: 559 gaccaggccagtgtggccgagcagatggctacgtgctagagggcaaggagctggagttct 618
||| | | |||||||| ||||||| |||||| ||||||||| ||||| ||||||||||
Sbjct: 52042248 gactcgacaagtgtggctgagcagagggctacctgctagaggacaagggactggagttct 52042189
Query: 619 atctgaggaaaatcaaggcccggaaaggcaaatgagtcct-cctcctgtcccagctcgtg 677
|||||||| ||||| ||||| ||||| |||||||| |||| ||||| || ||||| ||
Sbjct: 52042188 atctgagg-aaatctaggccaggaaaagcaaatgaatcctccctcccatcttagctcatg 52042130
Query: 678 taataaaggtgtttgttgttct 699
|||||||||||||| |||||||
Sbjct: 52042129 taataaaggtgtttattgttct 52042108
Score = 83.8 bits (42), Expect = 1e-13
Identities = 88/102 (86%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 563 aggccagtgtggccgagcagatggctacgtgctagagggcaaggagctggagttctatct 622
||||||||||| || |||| |||||| |||||||||| ||||||||| |||||| | |
Sbjct: 55557551 aggccagtgtg-cctagcaaatggctctgtgctagaggacaaggagctagagttccagtt 55557609
Query: 623 gaggaaaatcaaggcccggaaaggcaaatgagtcctcctcct 664
||||||||||| ||||| ||||||||||| | ||||||||||
Sbjct: 55557610 gaggaaaatcacggcccagaaaggcaaataaatcctcctcct 55557651
>Sscrofa_Chr07
|| Length = 134764511
Score = 406 bits (205), Expect = e-111
Identities = 301/333 (90%)
Strand = Plus / Plus
Query: 3 gctctttccagccggcgccgagcgatgggcatctctcgggacaactggcacaagcgccgc 62
||||||||||||||| |||||| | ||||||||| |||||||||||||||||| | ||
Sbjct: 117327938 gctctttccagccggtcccgagcaacaggcatctctggggacaactggcacaagctctgc 117327997
Query: 63 aagactgggggcaagagaaagccctaccacaagaagcggaagtatgagctgggacgcccc 122
||||| |||| |||||||||| ||||||| ||||| ||||||||||||||||| |||||
Sbjct: 117327998 aagacgggggacaagagaaagtcctaccaggagaagtggaagtatgagctgggatgcccc 117328057
Query: 123 gctgcaaacaccaagattggccctcgccgcatacacacagtccgtgtgcggggaggtaac 182
|||||||||||||| ||| ||| ||| |||||||||||||| || || ||||||||||
Sbjct: 117328058 actgcaaacaccaaggttgacccctgccacatacacacagtccatgggcagggaggtaac 117328117
Query: 183 aagaagtaccgggccttgaggctggacgtggggaacttctcctggggctccgagtgttgc 242
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 117328118 aagaagtaccgggcctagaggctggatgtggggaacttctcctggggctccgagtgttgc 117328177
Query: 243 acacgaaagacgaggattattgacgttgtgtacaacgcatccaacaatgaactggtccgt 302
||||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||| |
Sbjct: 117328178 acacgaaagacgaggattattgatgttgtgtacaatgcttccaacaatgaactgctccat 117328237
Query: 303 accaagaccctggtgaagaactgcattgtgctc 335
|||||||||||||||||||||||||||| ||||
Sbjct: 117328238 accaagaccctggtgaagaactgcattgcgctc 117328270
Score = 192 bits (97), Expect = 2e-46
Identities = 174/198 (87%), Gaps = 5/198 (2%)
Strand = Plus / Plus
Query: 499 tcagcagtctcctagaggagcagttcca----gcagggcaagcttcttgcgtgcatcgcc 554
||||||||||||||||||||||||||| ||||||||||||||| | || |
Sbjct: 117328724 tcagcagtctcctagaggagcagttccctcccgcagggcaagcttctcacaaatgtccct 117328783
Query: 555 tcaagaccaggccagtgtggccgagcagatggctacgtgctagagggcaaggagctggag 614
||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct: 117328784 tcaagaccaggccagtgtggccgaggagatggctatgtgctagagggcaaggagatggag 117328843
Query: 615 ttctatctgaggaaaatcaaggcccggaaaggcaaatgagtcct-cctcctgtcccagct 673
|||||||||||| ||||| |||| ||||||||||||||| |||| ||||||||| ||||
Sbjct: 117328844 ttctatctgagggaaatcgaggctcggaaaggcaaatgaatcctccctcctgtcttagct 117328903
Query: 674 cgtgtaataaaggtgttt 691
||||||||||||||||||
Sbjct: 117328904 cgtgtaataaaggtgttt 117328921
Score = 129 bits (65), Expect = 2e-27
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 332 gctcattgacagcaccccgtatcgacagtggtacgagtcccactacgcgctgcccctggg 391
||||||||||||||| ||||||| ||||||||| ||||||||||| || |||||||||||
Sbjct: 117328557 gctcattgacagcacaccgtatctacagtggtatgagtcccactatgcactgcccctggg 117328616
Query: 392 tcgcaagaagggggccaagctgactcctgaggaggaagagatttt 436
| |||||| | ||||||||||||||||||||| |||||||||||
Sbjct: 117328617 ccacaagaaagaggccaagctgactcctgaggaagaagagatttt 117328661
>Sscrofa_Chr06
|| Length = 157765593
Score = 335 bits (169), Expect = 2e-89
Identities = 172/173 (99%)
Strand = Plus / Plus
Query: 238 gttgcacacgaaagacgaggattattgacgttgtgtacaacgcatccaacaatgaactgg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154028156 gttgcacacgaaagacgaggattattgacgttgtgtacaacgcatccaacaatgaactgg 154028215
Query: 298 tccgtaccaagaccctggtgaagaactgcattgtgctcattgacagcaccccgtatcgac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 154028216 tccgtaccaagaccctggtgaagaactgcattgtgctcattgacagcaccccgtaccgac 154028275
Query: 358 agtggtacgagtcccactacgcgctgcccctgggtcgcaagaagggggccaag 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154028276 agtggtacgagtcccactacgcgctgcccctgggtcgcaagaagggggccaag 154028328
Score = 315 bits (159), Expect = 2e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 543 gcgtgcatcgcctcaagaccaggccagtgtggccgagcagatggctacgtgctagagggc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154029071 gcgtgcatcgcctcaagaccaggccagtgtggccgagcagatggctacgtgctagagggc 154029130
Query: 603 aaggagctggagttctatctgaggaaaatcaaggcccggaaaggcaaatgagtcctcctc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154029131 aaggagctggagttctatctgaggaaaatcaaggcccggaaaggcaaatgagtcctcctc 154029190
Query: 663 ctgtcccagctcgtgtaataaaggtgtttgttgttctct 701
|||||||||||||||||||||||||||||||||||||||
Sbjct: 154029191 ctgtcccagctcgtgtaataaaggtgtttgttgttctct 154029229
Score = 214 bits (108), Expect = 5e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 30 ggcatctctcgggacaactggcacaagcgccgcaagactgggggcaagagaaagccctac 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154027008 ggcatctctcgggacaactggcacaagcgccgcaagactgggggcaagagaaagccctac 154027067
Query: 90 cacaagaagcggaagtatgagctgggacgccccgctgcaaacaccaag 137
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154027068 cacaagaagcggaagtatgagctgggacgccccgctgcaaacaccaag 154027115
Score = 206 bits (104), Expect = 1e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 136 agattggccctcgccgcatacacacagtccgtgtgcggggaggtaacaagaagtaccggg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154027545 agattggccctcgccgcatacacacagtccgtgtgcggggaggtaacaagaagtaccggg 154027604
Query: 196 ccttgaggctggacgtggggaacttctcctggggctccgagtgt 239
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154027605 ccttgaggctggacgtggggaacttctcctggggctccgagtgt 154027648
Score = 89.7 bits (45), Expect = 2e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 499 tcagcagtctcctagaggagcagttccagcagggcaagcttcttg 543
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154028657 tcagcagtctcctagaggagcagttccagcagggcaagcttcttg 154028701
>Sscrofa_Chr18
|| Length = 61220071
Score = 256 bits (129), Expect = 1e-65
Identities = 366/442 (82%), Gaps = 16/442 (3%)
Strand = Plus / Minus
Query: 3 gctctttccagccggcgccgagcgatgggcatctctcgggacaactggcacaagcgccgc 62
||||||||||||| | | |||| |||| |||| ||||||||| ||||| ||||||| |
Sbjct: 52268131 gctctttccagccagaactgagcaatggatatctttcgggacaagtggcataagcgccac 52268072
Query: 63 aagactgggggcaagagaaagccctaccacaagaagcggaagtatgagctgggacgcccc 122
||||| ||||||||| |||||||||||||||| || | ||||||||||||||| |||||
Sbjct: 52268071 aagaccaggggcaagaaaaagccctaccacaagcagtgcaagtatgagctgggatgcccc 52268012
Query: 123 gctgcaaacaccaagattggccctcgccgcatacacacagtccgtgtgcggggaggtaac 182
|| ||| |||||| |||||| |||||||| |||||| |||||| | |||| |||
Sbjct: 52268011 caggccaaccccaagactggcccccgccgcat----acagtctgtgtgcagagaggcaac 52267956
Query: 183 aagaagtaccgggccttgaggctggacgtggggaacttctcctggggctccgagtgttgc 242
|||||||||| |||||||| || ||||||||| || |||||| |||||| |||||||||
Sbjct: 52267955 aagaagtaccaggccttgaagcgggacgtgggaaagttctcccggggcttggagtgttgc 52267896
Query: 243 acacgaaagacgaggattattgacgttgtgtacaacgcatccaa---------caatgaa 293
||||| |||||| ||||| |||||||||||| ||||||| ||| ||| ||
Sbjct: 52267895 acacgcaagacg-ggattcctgacgttgtgtataacgcattcaaagcattcagcaaccaa 52267837
Query: 294 ctggtccgtaccaagaccctggtgaagaactgcattgtgctcattgacagcaccccgtat 353
|||||| ||||||||| ||||| ||||||| |||| ||||||| ||| ||||||||||
Sbjct: 52267836 ctggtctgtaccaaga-cctggggaagaaccgcatcgtgctcacggacggcaccccgtac 52267778
Query: 354 cgacagtggtacgagtcccactacgcgctgcccctgggtcgcaagaagggggccaagctg 413
||||||||||||||||| | | | || ||||||||||| |||||||||||||||||| ||
Sbjct: 52267777 cgacagtggtacgagtctc-ccatgcactgcccctgggccgcaagaagggggccaagatg 52267719
Query: 414 actcctgaggaggaagagattt 435
|||| |||||| ||||||||||
Sbjct: 52267718 actcttgaggatgaagagattt 52267697
Score = 184 bits (93), Expect = 5e-44
Identities = 176/201 (87%), Gaps = 2/201 (0%)
Strand = Plus / Minus
Query: 500 cagcagtctcctagaggagcagttccagcagggcaagcttcttgcgtgcatcgcctcaag 559
|||||| |||| |||||||| || |||||||||| ||||||| || |||||||| |||||
Sbjct: 52267632 cagcagcctcccagaggagctgt-ccagcagggccagcttctcgcatgcatcgcttcaag 52267574
Query: 560 accaggccagtgtggccgagcagatggctacgtgctagagggcaaggagctggagttcta 619
||| ||||||| ||||||||||| ||||| |||||||||||| ||||||| ||||||||
Sbjct: 52267573 acccggccagtatggccgagcaggtggctccgtgctagagggtgaggagctagagttcta 52267514
Query: 620 tctgaggaaaatcaaggcccggaaaggcaaatgagtcct-cctcctgtcccagctcgtgt 678
||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 52267513 tctgaggaaaatcaaggcccggaaaggcaaatggatcctccctcctgtctcagctcacag 52267454
Query: 679 aataaaggtgtttgttgttct 699
||||||||||| | |||||||
Sbjct: 52267453 aataaaggtgtatattgttct 52267433
>Sscrofa_Chr13
|| Length = 218635234
Score = 198 bits (100), Expect = 3e-48
Identities = 166/188 (88%)
Strand = Plus / Plus
Query: 249 aagacgaggattattgacgttgtgtacaacgcatccaacaatgaactggtccgtaccaag 308
||||||||||||||||| |||||| || |||||||||||||||||| || || |||||
Sbjct: 188482136 aagacgaggattattgatattgtgtgcagtgcatccaacaatgaactgctctgtgccaag 188482195
Query: 309 accctggtgaagaactgcattgtgctcattgacagcaccccgtatcgacagtggtacgag 368
|||||||||| |||||||| |||||||| |||||| ||||| | |||||||||||||
Sbjct: 188482196 gccctggtgaaaaactgcatcatgctcatttccagcacaccgtaccaacagtggtacgag 188482255
Query: 369 tcccactacgcgctgcccctgggtcgcaagaagggggccaagctgactcctgaggaggaa 428
||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 188482256 tcccactctgccctgcccctgggccgccagaagggggccaagctgactcctgaggaggaa 188482315
Query: 429 gagatttt 436
||||||||
Sbjct: 188482316 gagatttt 188482323
Score = 117 bits (59), Expect = 9e-24
Identities = 95/106 (89%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 3 gctctttccagccggcgccgagcgatgggcatctctcgggacaactggcacaagcgccgc 62
||||||| ||||| ||||| ||| |||||||||| |||||||||||||||||| ||||
Sbjct: 188481831 gctcttttcagccagcgcccagcaatgggcatctt--gggacaactggcacaagcaccgc 188481888
Query: 63 aagactgggggcaagagaaagccctaccacaagaagcggaagtatg 108
|||||||||||||||||||| ||| ||||||||||| |||||||||
Sbjct: 188481889 aagactgggggcaagagaaaacccaaccacaagaagtggaagtatg 188481934
Score = 103 bits (52), Expect = 1e-19
Identities = 132/160 (82%), Gaps = 9/160 (5%)
Strand = Plus / Plus
Query: 499 tcagcagtctcctagaggagcagttccagcagggcaagcttcttgcgtgcatcgcctcaa 558
|||||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||
Sbjct: 188482384 tcagcagtctcctagaggagcagttcaagcagggcaagcttcttgcatgcatgacttcaa 188482443
Query: 559 gaccaggccagtgtggccgagcagatggctacgtgctagagggcaaggagctggagttct 618
||||| | | |||||||||||| ||||||||||||||||| ||||||
Sbjct: 188482444 gacca---------gacagagcagatggctcttctctagagggcaaggagctatagttct 188482494
Query: 619 atctgaggaaaatcaaggcccggaaaggcaaatgagtcct 658
||||||| |||||||||| | ||||||||||||| ||||
Sbjct: 188482495 atctgagaaaaatcaaggtctagaaaggcaaatgaatcct 188482534
>Sscrofa_Chr10
|| Length = 79102373
Score = 115 bits (58), Expect = 3e-23
Identities = 143/170 (84%), Gaps = 1/170 (0%)
Strand = Plus / Plus
Query: 499 tcagcagtctcctagaggagcagttccagcagggcaagcttcttgcgtgcatcgcctcaa 558
|||||||| | |||||| ||||||||||||||||| || ||| ||| || | | ||||
Sbjct: 49651355 tcagcagttttctagagaagcagttccagcagggccagtttcctgcatgaagtgtttcaa 49651414
Query: 559 gaccaggccagtgtggccgagcagatggctacgtgctagagggcaaggagctggagttct 618
|| ||| |||||||||| ||| |||||||| | |||| |||||||||||| ||||||||
Sbjct: 49651415 gatcagcccagtgtggctgagaagatggctgcatgctcaagggcaaggagcaggagttct 49651474
Query: 619 atctgaggaaaatcaaggcccggaaaggcaaatgagtcct-cctcctgtc 667
| |||||||||||| ||||| ||||||||||||| |||| |||||||||
Sbjct: 49651475 acctgaggaaaatccaggcctagaaaggcaaatgaatcctgcctcctgtc 49651524
Score = 105 bits (53), Expect = 3e-20
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 8 ttccagccggcgccgagcgatgggcatctctcgggacaactggcacaagcgccgcaagac 67
|||||||| |||||||| |||||||||||||| |||||||||||||||| || ||||||
Sbjct: 49650894 ttccagccagcgccgagtgatgggcatctctcaggacaactggcacaaggaccacaagac 49650953
Query: 68 tgggggcaagagaaagccctaccacaagaagcg 100
|||||||||||||||||||||| ||||||||
Sbjct: 49650954 -cggggcaagagaaagccctaccaaaagaagcg 49650985
Score = 85.7 bits (43), Expect = 3e-14
Identities = 184/229 (80%), Gaps = 14/229 (6%)
Strand = Plus / Plus
Query: 211 tggggaacttctcctggggctccgagtgttgcacacgaaagacgaggattattgacgttg 270
|||||||||||||||||||||| | ||||||||||| ||||| ||| ||||
Sbjct: 49651076 tggggaacttctcctggggctcagggtgttgcacaca---------gattactgatgttg 49651126
Query: 271 tgtacaacgcatccaacaatgaactggtccgtaccaa-gaccctggtgaagaactgcatt 329
||||||||| |||||||||| || || ||| |||||| | |||||||||||| | |||||
Sbjct: 49651127 tgtacaacgtatccaacaataaagtgatccataccaaagtccctggtgaagagcagcatt 49651186
Query: 330 gtgctcattgacagcaccccgtatcgacagtggtacgagtcccactacgcgctgcccctg 389
| ||| ||||||||| || | | |||| |||| |||||||||||| | ||||| ||
Sbjct: 49651187 gagcttgctgacagcacaccagaccaacagcggtaggagtcccactacac--tgcccatg 49651244
Query: 390 ggtcgcaagaagggggc--caagctgactcctgaggaggaagagatttt 436
|| | ||||||||||| |||| |||||||||| ||||||||||||||
Sbjct: 49651245 ggccacaagaaggggggggcaagttgactcctgaagaggaagagatttt 49651293
>Sscrofa_Chr05
|| Length = 111506441
Score = 85.7 bits (43), Expect = 3e-14
Identities = 191/239 (79%), Gaps = 1/239 (0%)
Strand = Plus / Minus
Query: 199 tgaggctggacgtggggaacttctcctggggctccgagtgttgcacacgaaagacgagga 258
||||||||||| | ||||| ||| ||||| ||| | |||||| ||| | || || |||
Sbjct: 13179835 tgaggctggacatagggaaggtcttctgggcctcagggtgttgtacatgtaaaacaggga 13179776
Query: 259 ttattgacgttgtgtacaacgcatccaacaatgaactggtccgtaccaagaccctggtga 318
||| ||| ||||| ||||| |||||||||| |||||||||| ||| |||||||| |||||
Sbjct: 13179775 ttactgatgttgtctacaatgcatccaacagtgaactggtcagtatcaagaccccggtga 13179716
Query: 319 agaactgcattgtgctcattgacagcaccccgtatcgacagtggtacgagtc-ccactac 377
|| |||||| || ||||||||||||| || | |||| | | | ||||| |||||
Sbjct: 13179715 ggatctgcatcatgttcattgacagcacaccattctgacaatagcaggagtctccactgt 13179656
Query: 378 gcgctgcccctgggtcgcaagaagggggccaagctgactcctgaggaggaagagatttt 436
|| ||| |||||| |||| ||| | |||||||||||||||||||||||||| |||||
Sbjct: 13179655 gcactgttcctgggctgcaataagtgagccaagctgactcctgaggaggaagaaatttt 13179597
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 14,405,179
Number of extensions: 243
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 27
Length of query: 734
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 713
Effective length of database: 2,808,413,156
Effective search space: 2002398580228
Effective search space used: 2002398580228
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)