Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012242
(1102 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029396.1| cellular nucleic acid-binding protein [Bos t... 346 2e-95
Alignment gi|NP_001193408.1| zinc finger protein 9 [Bos taurus]. 256 2e-68
Alignment gi|XP_001250569.1| PREDICTED: zinc finger protein 9 [Bos taurus]. 256 2e-68
Alignment gi|XP_002707894.1| PREDICTED: zinc finger protein 9-like [Bos t... 226 3e-59
Alignment gi|NP_001094525.1| zinc finger CCHC domain-containing protein 9... 56 6e-08
Alignment gi|NP_001039565.1| zinc finger CCHC domain-containing protein 7... 55 8e-08
Alignment gi|NP_001073703.1| zinc finger CCHC domain-containing protein 3... 54 2e-07
>ref|NP_001029396.1| cellular nucleic acid-binding protein [Bos taurus].
Length = 170
Score = 346 bits (887), Expect = 2e-95
Identities = 158/178 (88%), Positives = 159/178 (89%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 54 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 112
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 113 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|NP_001193408.1| zinc finger protein 9 [Bos taurus].
Length = 171
Score = 256 bits (654), Expect = 2e-68
Identities = 116/176 (65%), Positives = 128/176 (72%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSS ECFKCGR GHWA C G Q S++LP ICYRCG+
Sbjct: 1 MSSKECFKCGRVGHWAPACSKGGGARGRGARGRG------HGAQCSSTTLPVICYRCGKF 54
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GH AKDCDL +D CYNCG+ GHIAKDC EPKRE E+CCY CG+PGHLARDCD +E+KC
Sbjct: 55 GHYAKDCDLLDD-ICYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQEERKC 113
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEA 687
YSCG+ GHIQK CT+VKCYRCGE GHVAINC K +EVNCYRCGESGHL REC IEA
Sbjct: 114 YSCGKSGHIQKYCTQVKCYRCGEIGHVAINCRKMNEVNCYRCGESGHLTRECPIEA 169
>ref|XP_001250569.1| PREDICTED: zinc finger protein 9 [Bos taurus].
Length = 171
Score = 256 bits (654), Expect = 2e-68
Identities = 116/176 (65%), Positives = 128/176 (72%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSS ECFKCGR GHWA C G Q S++LP ICYRCG+
Sbjct: 1 MSSKECFKCGRVGHWAPACSKGGRARGRGARGRG------HGAQCSSTTLPVICYRCGKF 54
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GH AKDCDL +D CYNCG+ GHIAKDC EPKRE E+CCY CG+PGHLARDCD +E+KC
Sbjct: 55 GHYAKDCDLLDD-ICYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQEERKC 113
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEA 687
YSCG+ GHIQK CT+VKCYRCGE GHVAINC K +EVNCYRCGESGHL REC IEA
Sbjct: 114 YSCGKSGHIQKYCTQVKCYRCGEIGHVAINCRKMNEVNCYRCGESGHLTRECPIEA 169
>ref|XP_002707894.1| PREDICTED: zinc finger protein 9-like [Bos taurus].
Length = 170
Score = 226 bits (576), Expect = 3e-59
Identities = 108/176 (61%), Positives = 121/176 (68%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSS ECFKCGR GHWA C G Q S++LP ICYRCG+
Sbjct: 1 MSSKECFKCGRVGHWAPACSKGGRARGRGARGRG------HGAQCSSTTLPVICYRCGKF 54
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GH AKDCDL +D CYNCG+ GHIAKDC EPKRE E + + GHLARDCD +E+KC
Sbjct: 55 GHYAKDCDLLDD-ICYNCGKXGHIAKDCAEPKRE-ESVLLHLWQTGHLARDCDRQEERKC 112
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEA 687
YSCG+ GHIQ+ CT+VKCYRCGE HVAINC K +EVNCYRCGESGHL REC IEA
Sbjct: 113 YSCGKXGHIQQYCTQVKCYRCGEIVHVAINCRKMNEVNCYRCGESGHLTRECPIEA 168
>ref|NP_001094525.1| zinc finger CCHC domain-containing protein 9 [Bos taurus].
Length = 271
Score = 55.8 bits (133), Expect = 6e-08
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Frame = +1
Query: 316 ICYRCGESGHLAKDCD--LQEDE----ACYNCGRGGHIAKDCK---EPKREREQC--CYN 462
+C+ C ++GH DC L+ E CY CG H CK +P C+
Sbjct: 129 VCFHCRQTGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 463 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 558
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDC 226
>ref|NP_001039565.1| zinc finger CCHC domain-containing protein 7 [Bos taurus].
Length = 545
Score = 55.5 bits (132), Expect = 8e-08
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Frame = +1
Query: 382 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC-----GEFGHI 546
C NC + GH++K+C P++ R CC C + GHL C + C C +
Sbjct: 242 CRNCDKCGHLSKNCPFPQKVR-PCCL-CSERGHLQYAC---PARFCLGCSLPMSSTHRCL 296
Query: 547 QKDCTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESG 657
++ + +C RC GH A C +++ V CY CG+ G
Sbjct: 297 ERASWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEG 356
Query: 658 HLARECT 678
H ECT
Sbjct: 357 HYGHECT 363
>ref|NP_001073703.1| zinc finger CCHC domain-containing protein 3 [Bos taurus].
Length = 404
Score = 54.3 bits (129), Expect = 2e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 517 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 675
C+ CG H+ CT+ +C+RCGE GH++ C K + C CG+ GH +C
Sbjct: 336 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 386
Score = 52.0 bits (123), Expect = 9e-07
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 454 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 624
C+ CG H++ C + +C+ CGE GH+ C K + C CG+ GH C K +
Sbjct: 336 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 392
Query: 625 EVNCYRCGESGH 660
V G +GH
Sbjct: 393 SVGAQLTGVAGH 404
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,090,392
Number of extensions: 1078343
Number of successful extensions: 4832
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4386
Number of HSP's successfully gapped: 10
Length of query: 367
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,240,222
Effective search space: 3745178386
Effective search space used: 3745178386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012242
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012242
(1102 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857749.1| PREDICTED: similar to cellular nucleic acid bin... 359 3e-99
Alignment gi|XP_849006.1| PREDICTED: similar to cellular nucleic acid bin... 359 3e-99
Alignment gi|XP_533724.2| PREDICTED: similar to cellular nucleic acid bin... 346 3e-95
Alignment gi|XP_857625.1| PREDICTED: similar to cellular nucleic acid bin... 340 1e-93
Alignment gi|XP_857704.1| PREDICTED: similar to cellular nucleic acid bin... 332 5e-91
Alignment gi|XP_857588.1| PREDICTED: similar to cellular nucleic acid bin... 322 4e-88
Alignment gi|XP_538733.2| PREDICTED: similar to zinc finger, CCHC domain ... 56 5e-08
Alignment gi|XP_852557.1| PREDICTED: similar to zinc finger, CCHC domain ... 55 2e-07
Alignment gi|XP_536305.1| PREDICTED: similar to zinc finger, CCHC domain ... 54 3e-07
>ref|XP_857749.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 6 [Canis familiaris].
Length = 177
Score = 359 bits (921), Expect = 3e-99
Identities = 162/178 (91%), Positives = 162/178 (91%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 61 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 119
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 120 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
>ref|XP_849006.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 2 [Canis familiaris].
Length = 177
Score = 359 bits (921), Expect = 3e-99
Identities = 162/178 (91%), Positives = 162/178 (91%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 61 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 119
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 120 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
>ref|XP_533724.2| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 1 [Canis familiaris].
Length = 170
Score = 346 bits (887), Expect = 3e-95
Identities = 158/178 (88%), Positives = 159/178 (89%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 54 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 112
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 113 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|XP_857625.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 4 [Canis familiaris].
Length = 160
Score = 340 bits (872), Expect = 1e-93
Identities = 156/178 (87%), Positives = 156/178 (87%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGR-----------------FQFVSSSLPDICYRCGES 43
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 44 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 102
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 103 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 160
>ref|XP_857704.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 5 [Canis familiaris].
Length = 167
Score = 332 bits (850), Expect = 5e-91
Identities = 152/178 (85%), Positives = 152/178 (85%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT FTSDR DICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDR----------DICYRCGES 50
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 51 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 109
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 110 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 167
>ref|XP_857588.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 3 [Canis familiaris].
Length = 160
Score = 322 bits (825), Expect = 4e-88
Identities = 150/178 (84%), Positives = 151/178 (84%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT RG + S DICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG--------------RGMR---SRGRDICYRCGES 43
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 44 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 102
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 103 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 160
>ref|XP_538733.2| PREDICTED: similar to zinc finger, CCHC domain containing 7 [Canis
familiaris].
Length = 544
Score = 56.2 bits (134), Expect = 5e-08
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Frame = +1
Query: 382 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC-----GEFGHI 546
C NC + GH++K+C P++ R CC C + GHL C + C C +
Sbjct: 242 CRNCDKCGHLSKNCPLPQKVR-PCCL-CSERGHLQYAC---PARFCLGCSLPMSSTHRCL 296
Query: 547 QKDCTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESG 657
++ + +C RC GH A C +++ V CY CG+ G
Sbjct: 297 ERSSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCGQEG 356
Query: 658 HLARECT 678
H ECT
Sbjct: 357 HYGHECT 363
>ref|XP_852557.1| PREDICTED: similar to zinc finger, CCHC domain containing 9 [Canis
familiaris].
Length = 244
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Frame = +1
Query: 424 KEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA 603
++ ++ C++C KPGH DC A E + G CYRCG T H
Sbjct: 93 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTG------------MCYRCGSTEHEI 140
Query: 604 INCSKTSE--------VNCYRCGESGHLAREC 675
C + C+ CGE GHL+R C
Sbjct: 141 TKCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 172
Score = 52.8 bits (125), Expect = 6e-07
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Frame = +1
Query: 316 ICYRCGESGHLAKDCDLQEDE------ACYNCGRGGHIAKDCK---EPKREREQC--CYN 462
+C+ C + GH DC + CY CG H CK +P C+
Sbjct: 102 VCFHCRKPGHGIADCPAALENQDMGTGMCYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 161
Query: 463 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 558
CG+ GHL+R C +AD C CG H +KDC
Sbjct: 162 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 199
Score = 52.4 bits (124), Expect = 8e-07
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 11/118 (9%)
Frame = +1
Query: 175 CFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGESGHLAK 354
CF C + GH +CP D G +CYRCG + H
Sbjct: 103 CFHCRKPGHGIADCPAALE-------------NQDMG--------TGMCYRCGSTEHEIT 141
Query: 355 DCDLQEDEA--------CYNCGRGGHIAKDCKE-PKREREQ--CCYNCGKPGHLARDC 495
C + D A C+ CG GH+++ C + PK CC CG H +DC
Sbjct: 142 KCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 199
>ref|XP_536305.1| PREDICTED: similar to zinc finger, CCHC domain containing 9 isoform
2 [Canis familiaris].
Length = 271
Score = 53.9 bits (128), Expect = 3e-07
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Frame = +1
Query: 424 KEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA 603
++ ++ C++C KPGH DC A E + G CYRCG T H
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTG------------ICYRCGSTEHEI 167
Query: 604 INCSKTSE--------VNCYRCGESGHLAREC 675
C + C+ CGE GHL+R C
Sbjct: 168 TKCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 199
Score = 53.5 bits (127), Expect = 3e-07
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 11/118 (9%)
Frame = +1
Query: 175 CFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGESGHLAK 354
CF C + GH +CP D G ICYRCG + H
Sbjct: 130 CFHCRKPGHGIADCPAALE-------------NQDMG--------TGICYRCGSTEHEIT 168
Query: 355 DCDLQEDEA--------CYNCGRGGHIAKDCKE-PKREREQ--CCYNCGKPGHLARDC 495
C + D A C+ CG GH+++ C + PK CC CG H +DC
Sbjct: 169 KCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 226
Score = 52.8 bits (125), Expect = 6e-07
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 17/98 (17%)
Frame = +1
Query: 316 ICYRCGESGHLAKDCDLQEDE------ACYNCGRGGHIAKDCK---EPKREREQC--CYN 462
+C+ C + GH DC + CY CG H CK +P C+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 463 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 558
CG+ GHL+R C +AD C CG H +KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 226
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,681,433
Number of extensions: 1097301
Number of successful extensions: 5028
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4451
Number of HSP's successfully gapped: 13
Length of query: 367
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 263
Effective length of database: 15,407,560
Effective search space: 4052188280
Effective search space used: 4052188280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012242
(1102 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926395.3| PREDICTED: cellular nucleic acid-binding pro... 280 8e-76
Alignment gi|XP_003360587.1| PREDICTED: cellular nucleic acid-binding pro... 221 4e-58
Alignment gi|XP_003122068.1| PREDICTED: zinc finger CCHC domain-containin... 57 2e-08
Alignment gi|XP_003123804.1| PREDICTED: zinc finger CCHC domain-containin... 55 9e-08
Alignment gi|XP_003134416.1| PREDICTED: zinc finger CCHC domain-containin... 54 1e-07
>ref|XP_001926395.3| PREDICTED: cellular nucleic acid-binding protein-like [Sus scrofa].
Length = 171
Score = 280 bits (717), Expect = 8e-76
Identities = 127/177 (71%), Positives = 137/177 (77%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MS+ ECFKCGRSGHWAR CP RG S++LP ICYRCGE
Sbjct: 1 MSNKECFKCGRSGHWARGCPKGGGARGRGSRGRG------RGPHCSSTTLPIICYRCGEP 54
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GH AK+CDLQED CYNCG+ GHIAKDC EPKRER+QCCY CG+PGHLARDCD +EQKC
Sbjct: 55 GHHAKNCDLQED-ICYNCGKSGHIAKDCMEPKRERDQCCYTCGRPGHLARDCDRQEEQKC 113
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 690
YSCGE GHIQKDCT+V+CYRCGETGHVAINCSK SEVNCYRCGESGHLAREC IE T
Sbjct: 114 YSCGERGHIQKDCTQVRCYRCGETGHVAINCSKPSEVNCYRCGESGHLARECPIETT 170
>ref|XP_003360587.1| PREDICTED: cellular nucleic acid-binding protein, partial [Sus
scrofa].
Length = 97
Score = 221 bits (564), Expect = 4e-58
Identities = 97/98 (98%), Positives = 97/98 (98%)
Frame = +1
Query: 286 FQFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNC 465
FQFVSSSLPDICYRCGESGHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNC
Sbjct: 1 FQFVSSSLPDICYRCGESGHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNC 59
Query: 466 GKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR 579
GKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR
Sbjct: 60 GKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR 97
Score = 98.6 bits (244), Expect = 5e-21
Identities = 41/81 (50%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Frame = +1
Query: 454 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK------CYRCGETGHVAINCS 615
CY CG+ GHLA+DCD E CY+CG GHI KDC + K CY CG+ GH+A +C
Sbjct: 12 CYRCGESGHLAKDCD-LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 70
Query: 616 KTSEVNCYRCGESGHLARECT 678
E CY CGE GH+ ++CT
Sbjct: 71 HADEQKCYSCGEFGHIQKDCT 91
>ref|XP_003122068.1| PREDICTED: zinc finger CCHC domain-containing protein 7-like [Sus
scrofa].
Length = 545
Score = 57.0 bits (136), Expect = 2e-08
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Frame = +1
Query: 382 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH--IQKD 555
C NC + GH++K+C P++ R CC C + GHL C C H +++
Sbjct: 243 CRNCNKCGHLSKNCPFPQKVR-PCCL-CSERGHLQYACPARFCLDCSLPMSSAHRCLERP 300
Query: 556 CTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESGHLA 666
+ +C RC GH A C +++ V CY CG+ GH
Sbjct: 301 SWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEGHYG 360
Query: 667 RECT 678
ECT
Sbjct: 361 HECT 364
>ref|XP_003123804.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like [Sus
scrofa].
Length = 270
Score = 54.7 bits (130), Expect = 9e-08
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Frame = +1
Query: 316 ICYRCGESGHLAKDCD--LQEDE----ACYNCGRGGHIAKDCK---EPKREREQC--CYN 462
+C+ C + GH DC L+ E CY CG H CK +P C+
Sbjct: 128 VCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEIIKCKAQVDPALGEFPFAKCFV 187
Query: 463 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDCTKVK 570
CG+ GHL+R C +AD C CG H +KDC + K
Sbjct: 188 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESK 229
Score = 53.9 bits (128), Expect = 2e-07
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Frame = +1
Query: 424 KEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA 603
++ ++ C++C +PGH DC A E + G CYRCG T H
Sbjct: 119 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGI------------CYRCGSTEHEI 166
Query: 604 INCSKTSE--------VNCYRCGESGHLAREC 675
I C + C+ CGE GHL+R C
Sbjct: 167 IKCKAQVDPALGEFPFAKCFVCGEMGHLSRSC 198
Score = 52.4 bits (124), Expect = 5e-07
Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 11/118 (9%)
Frame = +1
Query: 175 CFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGESGHLAK 354
CF C + GH +CP + G ICYRCG + H
Sbjct: 129 CFHCRQPGHGIADCPAALE-------------NQEMG--------TGICYRCGSTEHEII 167
Query: 355 DCDLQEDEA--------CYNCGRGGHIAKDCKE-PKREREQ--CCYNCGKPGHLARDC 495
C Q D A C+ CG GH+++ C + PK CC CG H +DC
Sbjct: 168 KCKAQVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 225
>ref|XP_003134416.1| PREDICTED: zinc finger CCHC domain-containing protein 3-like [Sus
scrofa].
Length = 402
Score = 54.3 bits (129), Expect = 1e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 517 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 675
C+ CG H+ CT+ +C+RCGE GH++ C K + C CG+ GH +C
Sbjct: 334 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 384
Score = 51.2 bits (121), Expect = 1e-06
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 454 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 624
C+ CG H++ C + +C+ CGE GH+ C K + C CG+ GH C K +
Sbjct: 334 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 390
Query: 625 EVNCYRCGESGH 660
V G +GH
Sbjct: 391 SVAAQLTGVAGH 402
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,393,662
Number of extensions: 684165
Number of successful extensions: 2992
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2726
Number of HSP's successfully gapped: 10
Length of query: 367
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,854,232
Effective search space: 2364079944
Effective search space used: 2364079944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012242
(1102 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038521.1| cellular nucleic acid-binding protein isoform 1... 365 e-101
Alignment gi|NP_001103215.1| cellular nucleic acid-binding protein isofor... 352 2e-97
Alignment gi|NP_001103216.1| cellular nucleic acid-binding protein isofor... 346 2e-95
Alignment gi|NP_083434.1| zinc finger CCHC domain-containing protein 13 [... 273 1e-73
Alignment gi|NP_780335.1| zinc finger, CCHC domain containing 3 [Mus musc... 55 1e-07
Alignment gi|NP_613056.2| zinc finger CCHC domain-containing protein 7 [M... 54 2e-07
Alignment gi|NP_663428.2| zinc finger CCHC domain-containing protein 9 [M... 54 3e-07
>ref|NP_038521.1| cellular nucleic acid-binding protein isoform 1 [Mus musculus].
Length = 178
Score = 365 bits (938), Expect = e-101
Identities = 163/178 (91%), Positives = 163/178 (91%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 61 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 120
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 178
>ref|NP_001103215.1| cellular nucleic acid-binding protein isoform 2 [Mus musculus].
Length = 171
Score = 352 bits (904), Expect = 2e-97
Identities = 159/178 (89%), Positives = 160/178 (89%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 54 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 113
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 114 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 171
>ref|NP_001103216.1| cellular nucleic acid-binding protein isoform 3 [Mus musculus].
Length = 170
Score = 346 bits (887), Expect = 2e-95
Identities = 158/178 (88%), Positives = 159/178 (89%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 54 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 112
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 113 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|NP_083434.1| zinc finger CCHC domain-containing protein 13 [Mus musculus].
Length = 170
Score = 273 bits (699), Expect = 1e-73
Identities = 121/178 (67%), Positives = 137/178 (76%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSS CFKCG SGHWARECP RG Q +++ D+CYRCGE+
Sbjct: 1 MSSKSCFKCGHSGHWARECPKGGTRGRTARGRT-------RGPQCSTANQSDVCYRCGET 53
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GH AKDCDL +D CYNCGR GHIAKDC + KREREQCCY C +PGHLARDC+ +EQKC
Sbjct: 54 GHYAKDCDLLQD-TCYNCGRRGHIAKDCTQAKREREQCCYICSQPGHLARDCNRQEEQKC 112
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
Y+CGEFGHIQKDCT++KCYRCGE GH+A+NCSKTSEV+CYRCGESGHLAREC IEATA
Sbjct: 113 YTCGEFGHIQKDCTQIKCYRCGENGHMAVNCSKTSEVSCYRCGESGHLARECPIEATA 170
>ref|NP_780335.1| zinc finger, CCHC domain containing 3 [Mus musculus].
Length = 400
Score = 54.7 bits (130), Expect = 1e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 517 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 675
C+ CG H+ CT+ +C+RCGE GH++ C K + C CG+ GH +C
Sbjct: 332 CFKCGSRTHMSGTCTQDRCFRCGEEGHLSPYCRKV--IVCNLCGKRGHAFAQC 382
Score = 49.7 bits (117), Expect = 4e-06
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 454 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKT--S 624
C+ CG H++ C + +C+ CGE GH+ C KV C CG+ GH C K +
Sbjct: 332 CFKCGSRTHMSGTCT---QDRCFRCGEEGHLSPYCRKVIVCNLCGKRGHAFAQCPKAVHN 388
Query: 625 EVNCYRCGESGH 660
V +GH
Sbjct: 389 SVTAQLTSVAGH 400
>ref|NP_613056.2| zinc finger CCHC domain-containing protein 7 [Mus musculus].
Length = 541
Score = 54.3 bits (129), Expect = 2e-07
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Frame = +1
Query: 319 CYRCGESGHLAKDCDL-QEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 495
C C + GHL+K+C L Q+ AC C GH+ C P R C +C P C
Sbjct: 238 CRNCDKRGHLSKNCPLPQKVRACCLCSERGHLQYGC--PAR----YCLDCSLPMSSNHRC 291
Query: 496 DH--ADEQKCYSCGEFGHIQKDCTKV-----KCYRCGETGHVAINCSKTSEVNCYRCGES 654
+ ++C C GH C ++ + G +++ V CY C +
Sbjct: 292 FERLSWRKRCDRCDMIGHHADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQK 351
Query: 655 GHLARECT 678
GH ECT
Sbjct: 352 GHYGHECT 359
>ref|NP_663428.2| zinc finger CCHC domain-containing protein 9 [Mus musculus].
Length = 271
Score = 53.5 bits (127), Expect = 3e-07
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Frame = +1
Query: 316 ICYRCGESGHLAKDCD--LQEDE----ACYNCGRGGHIAKDCK---EPKREREQC--CYN 462
+C+ C + GH DC L+ + CY CG H C+ +P C+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 463 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 558
CG+ GHL+R C +AD C CG H +KDC
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDC 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,847,601
Number of extensions: 945497
Number of successful extensions: 4385
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4002
Number of HSP's successfully gapped: 9
Length of query: 367
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 264
Effective length of database: 12,523,851
Effective search space: 3306296664
Effective search space used: 3306296664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012242
(1102 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001120665.1| cellular nucleic acid-binding protein isofor... 365 e-101
Alignment gi|NP_001120664.1| cellular nucleic acid-binding protein isofor... 361 e-100
Alignment gi|NP_003409.1| cellular nucleic acid-binding protein isoform 3... 359 3e-99
Alignment gi|NP_001120667.1| cellular nucleic acid-binding protein isofor... 352 3e-97
Alignment gi|NP_001120666.1| cellular nucleic acid-binding protein isofor... 348 7e-96
Alignment gi|NP_001120668.1| cellular nucleic acid-binding protein isofor... 346 2e-95
Alignment gi|NP_976048.1| zinc finger CCHC domain-containing protein 13 [... 197 1e-50
Alignment gi|NP_115602.2| zinc finger CCHC domain-containing protein 7 [H... 62 7e-10
Alignment gi|NP_001124508.1| zinc finger CCHC domain-containing protein 9... 55 2e-07
Alignment gi|NP_001124507.1| zinc finger CCHC domain-containing protein 9... 55 2e-07
>ref|NP_001120665.1| cellular nucleic acid-binding protein isoform 2 [Homo sapiens].
Length = 178
Score = 365 bits (938), Expect = e-101
Identities = 163/178 (91%), Positives = 163/178 (91%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 61 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 120
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 178
>ref|NP_001120664.1| cellular nucleic acid-binding protein isoform 1 [Homo sapiens].
Length = 179
Score = 361 bits (926), Expect = e-100
Identities = 163/179 (91%), Positives = 163/179 (91%), Gaps = 1/179 (0%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 340 GHLAKDCDLQED-EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 516
GHLAKDCDLQED EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
Sbjct: 61 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 120
Query: 517 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 179
>ref|NP_003409.1| cellular nucleic acid-binding protein isoform 3 [Homo sapiens].
Length = 177
Score = 359 bits (921), Expect = 3e-99
Identities = 162/178 (91%), Positives = 162/178 (91%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 61 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 119
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 120 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
>ref|NP_001120667.1| cellular nucleic acid-binding protein isoform 5 [Homo sapiens].
Length = 171
Score = 352 bits (904), Expect = 3e-97
Identities = 159/178 (89%), Positives = 160/178 (89%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 54 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 113
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 114 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 171
>ref|NP_001120666.1| cellular nucleic acid-binding protein isoform 4 [Homo sapiens].
Length = 172
Score = 348 bits (892), Expect = 7e-96
Identities = 159/179 (88%), Positives = 160/179 (89%), Gaps = 1/179 (0%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 340 GHLAKDCDLQED-EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 516
GHLAKDCDLQED EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
Sbjct: 54 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 113
Query: 517 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 114 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 172
>ref|NP_001120668.1| cellular nucleic acid-binding protein isoform 6 [Homo sapiens].
Length = 170
Score = 346 bits (887), Expect = 2e-95
Identities = 158/178 (88%), Positives = 159/178 (89%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 54 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 112
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 693
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 113 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|NP_976048.1| zinc finger CCHC domain-containing protein 13 [Homo sapiens].
Length = 166
Score = 197 bits (502), Expect = 1e-50
Identities = 94/153 (61%), Positives = 103/153 (67%)
Frame = +1
Query: 160 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 339
MSS + F CG SGHWAR CP RG Q S++L CY CGES
Sbjct: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHG-------RGSQCGSTTLSYTCYCCGES 53
Query: 340 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 519
G AK+C L + CYNCGR GHIAKDCK+PKRER Q CY CG+ GHLARDCD EQKC
Sbjct: 54 GRNAKNCVLLGN-ICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKC 112
Query: 520 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSK 618
YSCG+ GHIQKDC +VKCYRCGE GHVAINCSK
Sbjct: 113 YSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
>ref|NP_115602.2| zinc finger CCHC domain-containing protein 7 [Homo sapiens].
Length = 543
Score = 62.4 bits (150), Expect = 7e-10
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 8/137 (5%)
Frame = +1
Query: 289 QFVSSSLPDICYRCGESGHLAKDCDL-QEDEACYNCGRGGHIAKDCKEPKREREQCCYNC 465
++ S++ IC C + GHL+K+C L ++ C+ C R GH+ C P C C
Sbjct: 233 RYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAP------LCEYC 286
Query: 466 GKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-----KCYRCGETGHVAINCSKTS 624
P L C H+ +++C C GH CT++ + G ++
Sbjct: 287 PVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSA 346
Query: 625 EVNCYRCGESGHLAREC 675
CY C + GH EC
Sbjct: 347 LAYCYHCAQKGHYGHEC 363
>ref|NP_001124508.1| zinc finger CCHC domain-containing protein 9 [Homo sapiens].
Length = 271
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Frame = +1
Query: 424 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 567
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 568 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 675
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Frame = +1
Query: 316 ICYRCGESGHLAKDCDLQEDE------ACYNCGRGGHIAKDCK---EPKREREQC--CYN 462
+C+ C + GH DC + CY CG H CK +P C+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 463 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 558
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
>ref|NP_001124507.1| zinc finger CCHC domain-containing protein 9 [Homo sapiens].
Length = 271
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Frame = +1
Query: 424 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 567
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 568 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 675
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Frame = +1
Query: 316 ICYRCGESGHLAKDCDLQEDE------ACYNCGRGGHIAKDCK---EPKREREQC--CYN 462
+C+ C + GH DC + CY CG H CK +P C+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 463 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 558
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,191,067
Number of extensions: 1114570
Number of successful extensions: 6276
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5214
Number of HSP's successfully gapped: 21
Length of query: 367
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,868,908
Effective search space: 3910522804
Effective search space used: 3910522804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012242
(1102 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892166.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 410 e-112
gb|GL894790.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 349 2e-93
gb|GL893557.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 291 4e-76
gb|GL896499.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 170 1e-39
Sscrofa_ChrX 165 6e-38
>gb|GL892166.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1058
Length = 624
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 375 tgaagcctgctataactgcggtagaggaggccacattgccaaggactgcaaggagcccaa 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgaagcctgctataactgcggtagaggaggccacattgccaaggactgcaaggagcccaa 218
Query: 435 gagagagcgagagcagtgctgctacaactgcggcaaacctggccacctggcccgcgactg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gagagagcgagagcagtgctgctacaactgcggcaaacctggccacctggcccgcgactg 158
Query: 495 tgaccatgcggatgagcagaagtgctattcttgtggagagtttgggcacattcagaaaga 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tgaccatgcggatgagcagaagtgctattcttgtggagagtttgggcacattcagaaaga 98
Query: 555 ctgcaccaaagtgaagtgctataggtg 581
|||||||||||||||||||||||||||
Sbjct: 97 ctgcaccaaagtgaagtgctataggtg 71
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 282 aggtttccagtttgtttcttcgtctcttccagacatctgttaccgctgtggtgagtctgg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aggtttccagtttgtttcttcgtctcttccagacatctgttaccgctgtggtgagtctgg 481
Query: 342 tcatcttgccaaggattgtgatctccaagaggatg 376
|||||||||||||||||||||||||||||||||||
Sbjct: 480 tcatcttgccaaggattgtgatctccaagaggatg 446
>gb|GL894790.1| Sus scrofa unplaced genomic scaffold chrU_scaffold342
Length = 658
Score = 349 bits (176), Expect = 2e-93
Identities = 237/256 (92%), Gaps = 5/256 (1%)
Strand = Plus / Plus
Query: 850 tcgactttctgcatttaactacnnnnnnngtttatgtttagtttggtagaggtgttatgt 909
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10 tcgactttctgcatttaactacaaaaaaagtttatgtttagtttggtagaggtgttatgt 69
Query: 910 ataatgctttgttaaagaaccccctttccacgccactggtgaatagggattgatgaatgg 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ataatgctttgttaaagaaccccctttccacgccactggtgaatagggattgatgaatgg 129
Query: 970 gaagagttgagtcagaccagtaagcccgttctgggtttctcngatatgttnccatgtagg 1029
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 130 gaagagttgagtcagaccagtaagcccgttctgggtttctcgaatatgttcccatgtagg 189
Query: 1030 aggtaaaaccnatttctgga-gtgtctatgaactttncgtaat--actttttattttagc 1086
|||||||||| ||| ||||| |||||||||||||| ||||| |||||| ||||||||
Sbjct: 190 aggtaaaaccaatt-ctggaagtgtctatgaactt-ccgtaaataacttttaattttagc 247
Query: 1087 ataatgatggccttgg 1102
||||||||||||||||
Sbjct: 248 ataatgatggccttgg 263
>gb|GL893557.1| Sus scrofa unplaced genomic scaffold chrU_scaffold231
Length = 294
Score = 291 bits (147), Expect = 4e-76
Identities = 150/151 (99%)
Strand = Plus / Minus
Query: 576 taggtgtggcgaaactggtcatgtagccatcaactgcagcaagacgagtgaagtcaactg 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 taggtgtggcgaaactggtcatgtagccatcaactgcagcaagacgagtgaagtcaactg 92
Query: 636 ttaccgctgtggcgagtcagggcaccttgcacgggaatgcacgattgaggccacagctta 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ttaccgctgtggcgagtcagggcaccttgcacgggaatgcacgattgaggccacagctta 32
Query: 696 attattttcctttgtcgtccctccttttctg 726
||||||||||||||||| |||||||||||||
Sbjct: 31 attattttcctttgtcgcccctccttttctg 1
>gb|GL896499.1| Sus scrofa unplaced genomic scaffold chrU_scaffold833
Length = 999
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1 gtgcgcagcggcgtgtgtggggccgtgtgcagatccgcgtgtggcgcaggcaaggaccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtgcgcagcggcgtgtgtggggccgtgtgcagatccgcgtgtggcgcaggcaaggaccct 486
Query: 61 gaaaataaacagccgctgtcttgcga 86
||||||||||||||||||||||||||
Sbjct: 485 gaaaataaacagccgctgtcttgcga 460
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 101 cctgcgtccgagtctccgccgctgcggaccgctcagacgccgaag 145
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cctgcgtccgagtctccgccgctgcggaccgctcagacgccgaag 315
>Sscrofa_ChrX
|| Length = 144288218
Score = 165 bits (83), Expect = 6e-38
Identities = 375/467 (80%), Gaps = 9/467 (1%)
Strand = Plus / Plus
Query: 315 catctgttaccgctgtggtgagtctggtcatcttgccaaggattgtgatctccaagagga 374
||||||||||||||| |||||| ||||||||| ||| ||| | ||||| || || |||||
Sbjct: 67541619 catctgttaccgctgcggtgagcctggtcatcatgctaagaactgtgaccttcaggagga 67541678
Query: 375 tgaagcctgctataactgcggtagaggaggccacattgccaaggactgcaaggagcccaa 434
|||||| ||||| || | | | |||||||| ||||| ||||| | |||||| ||
Sbjct: 67541679 cat---ctgctacaactgtgggaaaagtggccacatcgccaaagactgtatggagcctaa 67541735
Query: 435 gagagagcgagagcagtgctgctacaactgcggcaaacctggccacctggcccgcgactg 494
| ||||| |||| |||||||| |||| ||| ||| ||| ||||| ||||| ||||||||
Sbjct: 67541736 gcgagagagagaccagtgctgttacacctgtggccgaccaggccatctggcgcgcgactg 67541795
Query: 495 tgaccatgcggatgagcagaagtgctattcttgtggagagtttgggcacattcagaaaga 554
||||| | ||| |||||||||||||| ||||| || || ||| ||||||||||||||
Sbjct: 67541796 tgaccgtcaggaagagcagaagtgctactcttgcggcgaacgtggccacattcagaaaga 67541855
Query: 555 ctgcaccaaagtgaagtgctataggtgtggcgaaactggtcatgtagccatcaactgcag 614
||||||| |||| | ||| || | ||||| || || || ||||| ||||||||||||||
Sbjct: 67541856 ctgcacccaagtcaggtgttaccgttgtggtgagaccggccatgtggccatcaactgcag 67541915
Query: 615 caagacgagtgaagtcaactgttaccgctgtggcgagtcagggcaccttgcacgggaatg 674
|||| | || ||||||||||| |||||||||||||| || || || || || ||||||||
Sbjct: 67541916 caagccaagcgaagtcaactgctaccgctgtggcgaatcgggccatctagcccgggaatg 67541975
Query: 675 cacgattgaggccacagcttaattattttcctttgt-cgtc---cctcctttt-ctgatt 729
| | ||||| | || ||||||| ||| ||||||| | || ||||||||| ||||||
Sbjct: 67541976 ccccattgaaactaccacttaatt-tttccctttgtccctcccacctccttttgctgatt 67542034
Query: 730 gatggttgtattattttctctgaatcctcttcactggccaaaggttg 776
||| ||||| ||||||||||||| | ||||| ||| ||||||||||
Sbjct: 67542035 gataattgtagtattttctctgaaacttcttctctgaccaaaggttg 67542081
Score = 91.7 bits (46), Expect = 8e-16
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 142 gaagatctaactgcagccatgagcagcaatgaatgcttcaagtgtggacgatctggccac 201
|||||||| || ||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 67541464 gaagatctcaccgcagccatgagcaataaggaatgcttcaagtgtggacgctctggccac 67541523
Query: 202 tgggcccggg 211
||||||||||
Sbjct: 67541524 tgggcccggg 67541533
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,602,846
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 8
Length of query: 1102
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1081
Effective length of database: 2,808,413,156
Effective search space: 3035894621636
Effective search space used: 3035894621636
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)