Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012247
(1116 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029396.1| cellular nucleic acid-binding protein [Bos t... 350 1e-96
Alignment gi|NP_001193408.1| zinc finger protein 9 [Bos taurus]. 261 1e-69
Alignment gi|XP_001250569.1| PREDICTED: zinc finger protein 9 [Bos taurus]. 261 1e-69
Alignment gi|XP_002707894.1| PREDICTED: zinc finger protein 9-like [Bos t... 231 1e-60
Alignment gi|NP_001094525.1| zinc finger CCHC domain-containing protein 9... 56 7e-08
Alignment gi|NP_001039565.1| zinc finger CCHC domain-containing protein 7... 55 9e-08
Alignment gi|NP_001073703.1| zinc finger CCHC domain-containing protein 3... 54 2e-07
>ref|NP_001029396.1| cellular nucleic acid-binding protein [Bos taurus].
Length = 170
Score = 350 bits (899), Expect = 1e-96
Identities = 158/177 (89%), Positives = 159/177 (89%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 54 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 113
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 114 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|NP_001193408.1| zinc finger protein 9 [Bos taurus].
Length = 171
Score = 261 bits (666), Expect = 1e-69
Identities = 116/175 (66%), Positives = 128/175 (73%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSS ECFKCGR GHWA C G Q S++LP ICYRCG+
Sbjct: 1 MSSKECFKCGRVGHWAPACSKGGGARGRGARGRG------HGAQCSSTTLPVICYRCGKF 54
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GH AKDCDL +D CYNCG+ GHIAKDC EPKRE E+CCY CG+PGHLARDCD +E+KCY
Sbjct: 55 GHYAKDCDLLDDICYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQEERKCY 114
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEA 685
SCG+ GHIQK CT+VKCYRCGE GHVAINC K +EVNCYRCGESGHL REC IEA
Sbjct: 115 SCGKSGHIQKYCTQVKCYRCGEIGHVAINCRKMNEVNCYRCGESGHLTRECPIEA 169
>ref|XP_001250569.1| PREDICTED: zinc finger protein 9 [Bos taurus].
Length = 171
Score = 261 bits (666), Expect = 1e-69
Identities = 116/175 (66%), Positives = 128/175 (73%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSS ECFKCGR GHWA C G Q S++LP ICYRCG+
Sbjct: 1 MSSKECFKCGRVGHWAPACSKGGRARGRGARGRG------HGAQCSSTTLPVICYRCGKF 54
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GH AKDCDL +D CYNCG+ GHIAKDC EPKRE E+CCY CG+PGHLARDCD +E+KCY
Sbjct: 55 GHYAKDCDLLDDICYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQEERKCY 114
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEA 685
SCG+ GHIQK CT+VKCYRCGE GHVAINC K +EVNCYRCGESGHL REC IEA
Sbjct: 115 SCGKSGHIQKYCTQVKCYRCGEIGHVAINCRKMNEVNCYRCGESGHLTRECPIEA 169
>ref|XP_002707894.1| PREDICTED: zinc finger protein 9-like [Bos taurus].
Length = 170
Score = 231 bits (588), Expect = 1e-60
Identities = 108/175 (61%), Positives = 121/175 (69%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSS ECFKCGR GHWA C G Q S++LP ICYRCG+
Sbjct: 1 MSSKECFKCGRVGHWAPACSKGGRARGRGARGRG------HGAQCSSTTLPVICYRCGKF 54
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GH AKDCDL +D CYNCG+ GHIAKDC EPKRE E + + GHLARDCD +E+KCY
Sbjct: 55 GHYAKDCDLLDDICYNCGKXGHIAKDCAEPKRE-ESVLLHLWQTGHLARDCDRQEERKCY 113
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEA 685
SCG+ GHIQ+ CT+VKCYRCGE HVAINC K +EVNCYRCGESGHL REC IEA
Sbjct: 114 SCGKXGHIQQYCTQVKCYRCGEIVHVAINCRKMNEVNCYRCGESGHLTRECPIEA 168
>ref|NP_001094525.1| zinc finger CCHC domain-containing protein 9 [Bos taurus].
Length = 271
Score = 55.8 bits (133), Expect = 7e-08
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Frame = +2
Query: 317 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 460
+C+ C ++GH DC ++ CY CG H CK +P C+
Sbjct: 129 VCFHCRQTGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 461 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 556
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDC 226
Score = 49.3 bits (116), Expect = 6e-06
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 23/107 (21%)
Frame = +2
Query: 422 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 565
++ ++ C++C + GH DC A E + CY CG H I K KV
Sbjct: 120 RQAAKKNAMVCFHCRQTGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 566 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 673
KC+ CGE GH++ +C + C CG H+ ++C
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDC 226
>ref|NP_001039565.1| zinc finger CCHC domain-containing protein 7 [Bos taurus].
Length = 545
Score = 55.5 bits (132), Expect = 9e-08
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Frame = +2
Query: 380 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC-----GEFGHI 544
C NC + GH++K+C P++ R CC C + GHL C + C C +
Sbjct: 242 CRNCDKCGHLSKNCPFPQKVR-PCCL-CSERGHLQYAC---PARFCLGCSLPMSSTHRCL 296
Query: 545 QKDCTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESG 655
++ + +C RC GH A C +++ V CY CG+ G
Sbjct: 297 ERASWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEG 356
Query: 656 HLARECT 676
H ECT
Sbjct: 357 HYGHECT 363
>ref|NP_001073703.1| zinc finger CCHC domain-containing protein 3 [Bos taurus].
Length = 404
Score = 54.3 bits (129), Expect = 2e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +2
Query: 515 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 673
C+ CG H+ CT+ +C+RCGE GH++ C K + C CG+ GH +C
Sbjct: 336 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 386
Score = 52.0 bits (123), Expect = 9e-07
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 452 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 622
C+ CG H++ C + +C+ CGE GH+ C K + C CG+ GH C K +
Sbjct: 336 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 392
Query: 623 EVNCYRCGESGH 658
V G +GH
Sbjct: 393 SVGAQLTGVAGH 404
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +2
Query: 275 SDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCC 454
++RG+ + P C++CG H++ C +D C+ CG GH++ C+ + C
Sbjct: 322 AERGYSWYKGQ-PKTCFKCGSRTHMSGSCT--QDRCFRCGEEGHLSPYCR-----KGIVC 373
Query: 455 YNCGKPGHLARDCDHA 502
CGK GH C A
Sbjct: 374 NLCGKRGHAFAQCPKA 389
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,434,494
Number of extensions: 1045346
Number of successful extensions: 4405
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3972
Number of HSP's successfully gapped: 10
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012247
(1116 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857749.1| PREDICTED: similar to cellular nucleic acid bin... 363 e-100
Alignment gi|XP_849006.1| PREDICTED: similar to cellular nucleic acid bin... 363 e-100
Alignment gi|XP_533724.2| PREDICTED: similar to cellular nucleic acid bin... 350 1e-96
Alignment gi|XP_857625.1| PREDICTED: similar to cellular nucleic acid bin... 345 6e-95
Alignment gi|XP_857704.1| PREDICTED: similar to cellular nucleic acid bin... 336 2e-92
Alignment gi|XP_857588.1| PREDICTED: similar to cellular nucleic acid bin... 327 2e-89
Alignment gi|XP_538733.2| PREDICTED: similar to zinc finger, CCHC domain ... 56 5e-08
Alignment gi|XP_852557.1| PREDICTED: similar to zinc finger, CCHC domain ... 55 9e-08
Alignment gi|XP_536305.1| PREDICTED: similar to zinc finger, CCHC domain ... 55 9e-08
>ref|XP_857749.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 6 [Canis familiaris].
Length = 177
Score = 363 bits (933), Expect = e-100
Identities = 162/177 (91%), Positives = 162/177 (91%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 61 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 120
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
>ref|XP_849006.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 2 [Canis familiaris].
Length = 177
Score = 363 bits (933), Expect = e-100
Identities = 162/177 (91%), Positives = 162/177 (91%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 61 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 120
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
>ref|XP_533724.2| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 1 [Canis familiaris].
Length = 170
Score = 350 bits (899), Expect = 1e-96
Identities = 158/177 (89%), Positives = 159/177 (89%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 54 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 113
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 114 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|XP_857625.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 4 [Canis familiaris].
Length = 160
Score = 345 bits (884), Expect = 6e-95
Identities = 156/177 (88%), Positives = 156/177 (88%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGR-----------------FQFVSSSLPDICYRCGES 43
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 44 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 103
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 104 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 160
>ref|XP_857704.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 5 [Canis familiaris].
Length = 167
Score = 336 bits (862), Expect = 2e-92
Identities = 152/177 (85%), Positives = 152/177 (85%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT FTSDR DICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDR----------DICYRCGES 50
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 51 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 110
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 111 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 167
>ref|XP_857588.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 3 [Canis familiaris].
Length = 160
Score = 327 bits (837), Expect = 2e-89
Identities = 150/177 (84%), Positives = 151/177 (85%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT RG + S DICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRG--------------RGMR---SRGRDICYRCGES 43
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 44 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 103
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 104 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 160
>ref|XP_538733.2| PREDICTED: similar to zinc finger, CCHC domain containing 7 [Canis
familiaris].
Length = 544
Score = 56.2 bits (134), Expect = 5e-08
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Frame = +2
Query: 380 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC-----GEFGHI 544
C NC + GH++K+C P++ R CC C + GHL C + C C +
Sbjct: 242 CRNCDKCGHLSKNCPLPQKVR-PCCL-CSERGHLQYAC---PARFCLGCSLPMSSTHRCL 296
Query: 545 QKDCTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESG 655
++ + +C RC GH A C +++ V CY CG+ G
Sbjct: 297 ERSSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCGQEG 356
Query: 656 HLARECT 676
H ECT
Sbjct: 357 HYGHECT 363
>ref|XP_852557.1| PREDICTED: similar to zinc finger, CCHC domain containing 9 [Canis
familiaris].
Length = 244
Score = 55.5 bits (132), Expect = 9e-08
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Frame = +2
Query: 317 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 460
+C+ C + GH DC D+ CY CG H CK +P C+
Sbjct: 102 VCFHCRKPGHGIADCPAALENQDMGTGMCYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 161
Query: 461 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 556
CG+ GHL+R C +AD C CG H +KDC
Sbjct: 162 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 199
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Frame = +2
Query: 422 KEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA 601
++ ++ C++C KPGH DC A E + G CYRCG T H
Sbjct: 93 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTG------------MCYRCGSTEHEI 140
Query: 602 INCSKTSE--------VNCYRCGESGHLAREC 673
C + C+ CGE GHL+R C
Sbjct: 141 TKCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 172
Score = 50.4 bits (119), Expect = 3e-06
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Frame = +2
Query: 176 CFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGESGHLAK 355
CF C + GH +CP D G +CYRCG + H
Sbjct: 103 CFHCRKPGHGIADCPAALE-------------NQDMG--------TGMCYRCGSTEHEIT 141
Query: 356 DCDLQED---------ACYNCGRGGHIAKDCKE-PKREREQ--CCYNCGKPGHLARDC 493
C + D C+ CG GH+++ C + PK CC CG H +DC
Sbjct: 142 KCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 199
>ref|XP_536305.1| PREDICTED: similar to zinc finger, CCHC domain containing 9 isoform
2 [Canis familiaris].
Length = 271
Score = 55.5 bits (132), Expect = 9e-08
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Frame = +2
Query: 317 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 460
+C+ C + GH DC D+ CY CG H CK +P C+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 461 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 556
CG+ GHL+R C +AD C CG H +KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 226
Score = 53.9 bits (128), Expect = 3e-07
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Frame = +2
Query: 422 KEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA 601
++ ++ C++C KPGH DC A E + G CYRCG T H
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTG------------ICYRCGSTEHEI 167
Query: 602 INCSKTSE--------VNCYRCGESGHLAREC 673
C + C+ CGE GHL+R C
Sbjct: 168 TKCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 199
Score = 51.6 bits (122), Expect = 1e-06
Identities = 33/118 (27%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Frame = +2
Query: 176 CFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGESGHLAK 355
CF C + GH +CP D G ICYRCG + H
Sbjct: 130 CFHCRKPGHGIADCPAALE-------------NQDMG--------TGICYRCGSTEHEIT 168
Query: 356 DCDLQED---------ACYNCGRGGHIAKDCKE-PKREREQ--CCYNCGKPGHLARDC 493
C + D C+ CG GH+++ C + PK CC CG H +DC
Sbjct: 169 KCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 226
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,033,111
Number of extensions: 1065604
Number of successful extensions: 4655
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4149
Number of HSP's successfully gapped: 13
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012247
(1116 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926395.3| PREDICTED: cellular nucleic acid-binding pro... 285 3e-77
Alignment gi|XP_003360587.1| PREDICTED: cellular nucleic acid-binding pro... 226 2e-59
Alignment gi|XP_003122068.1| PREDICTED: zinc finger CCHC domain-containin... 57 2e-08
Alignment gi|XP_003123804.1| PREDICTED: zinc finger CCHC domain-containin... 55 9e-08
Alignment gi|XP_003134416.1| PREDICTED: zinc finger CCHC domain-containin... 54 1e-07
>ref|XP_001926395.3| PREDICTED: cellular nucleic acid-binding protein-like [Sus scrofa].
Length = 171
Score = 285 bits (729), Expect = 3e-77
Identities = 127/176 (72%), Positives = 137/176 (77%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MS+ ECFKCGRSGHWAR CP RG S++LP ICYRCGE
Sbjct: 1 MSNKECFKCGRSGHWARGCPKGGGARGRGSRGRG------RGPHCSSTTLPIICYRCGEP 54
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GH AK+CDLQED CYNCG+ GHIAKDC EPKRER+QCCY CG+PGHLARDCD +EQKCY
Sbjct: 55 GHHAKNCDLQEDICYNCGKSGHIAKDCMEPKRERDQCCYTCGRPGHLARDCDRQEEQKCY 114
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 688
SCGE GHIQKDCT+V+CYRCGETGHVAINCSK SEVNCYRCGESGHLAREC IE T
Sbjct: 115 SCGERGHIQKDCTQVRCYRCGETGHVAINCSKPSEVNCYRCGESGHLARECPIETT 170
>ref|XP_003360587.1| PREDICTED: cellular nucleic acid-binding protein, partial [Sus
scrofa].
Length = 97
Score = 226 bits (576), Expect = 2e-59
Identities = 97/97 (100%), Positives = 97/97 (100%)
Frame = +2
Query: 287 FQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCG 466
FQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCG
Sbjct: 1 FQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCG 60
Query: 467 KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR 577
KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR
Sbjct: 61 KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR 97
Score = 98.6 bits (244), Expect = 6e-21
Identities = 41/81 (50%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Frame = +2
Query: 452 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK------CYRCGETGHVAINCS 613
CY CG+ GHLA+DCD E CY+CG GHI KDC + K CY CG+ GH+A +C
Sbjct: 12 CYRCGESGHLAKDCD-LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 70
Query: 614 KTSEVNCYRCGESGHLARECT 676
E CY CGE GH+ ++CT
Sbjct: 71 HADEQKCYSCGEFGHIQKDCT 91
>ref|XP_003122068.1| PREDICTED: zinc finger CCHC domain-containing protein 7-like [Sus
scrofa].
Length = 545
Score = 57.0 bits (136), Expect = 2e-08
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Frame = +2
Query: 380 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH--IQKD 553
C NC + GH++K+C P++ R CC C + GHL C C H +++
Sbjct: 243 CRNCNKCGHLSKNCPFPQKVR-PCCL-CSERGHLQYACPARFCLDCSLPMSSAHRCLERP 300
Query: 554 CTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESGHLA 664
+ +C RC GH A C +++ V CY CG+ GH
Sbjct: 301 SWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEGHYG 360
Query: 665 RECT 676
ECT
Sbjct: 361 HECT 364
>ref|XP_003123804.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like [Sus
scrofa].
Length = 270
Score = 54.7 bits (130), Expect = 9e-08
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Frame = +2
Query: 317 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 460
+C+ C + GH DC ++ CY CG H CK +P C+
Sbjct: 128 VCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEIIKCKAQVDPALGEFPFAKCFV 187
Query: 461 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDCTKVK 568
CG+ GHL+R C +AD C CG H +KDC + K
Sbjct: 188 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESK 229
Score = 53.9 bits (128), Expect = 2e-07
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Frame = +2
Query: 422 KEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA 601
++ ++ C++C +PGH DC A E + G CYRCG T H
Sbjct: 119 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGI------------CYRCGSTEHEI 166
Query: 602 INCSKTSE--------VNCYRCGESGHLAREC 673
I C + C+ CGE GHL+R C
Sbjct: 167 IKCKAQVDPALGEFPFAKCFVCGEMGHLSRSC 198
Score = 50.4 bits (119), Expect = 2e-06
Identities = 33/118 (27%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Frame = +2
Query: 176 CFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGESGHLAK 355
CF C + GH +CP + G ICYRCG + H
Sbjct: 129 CFHCRQPGHGIADCPAALE-------------NQEMG--------TGICYRCGSTEHEII 167
Query: 356 DCDLQED---------ACYNCGRGGHIAKDCKE-PKREREQ--CCYNCGKPGHLARDC 493
C Q D C+ CG GH+++ C + PK CC CG H +DC
Sbjct: 168 KCKAQVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 225
>ref|XP_003134416.1| PREDICTED: zinc finger CCHC domain-containing protein 3-like [Sus
scrofa].
Length = 402
Score = 54.3 bits (129), Expect = 1e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +2
Query: 515 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 673
C+ CG H+ CT+ +C+RCGE GH++ C K + C CG+ GH +C
Sbjct: 334 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 384
Score = 51.2 bits (121), Expect = 1e-06
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 452 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 622
C+ CG H++ C + +C+ CGE GH+ C K + C CG+ GH C K +
Sbjct: 334 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 390
Query: 623 EVNCYRCGESGH 658
V G +GH
Sbjct: 391 SVAAQLTGVAGH 402
Score = 50.4 bits (119), Expect = 2e-06
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +2
Query: 275 SDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCC 454
++RG+ + P C++CG H++ C +D C+ CG GH++ C+ + C
Sbjct: 320 AERGYSWYKGQ-PKTCFKCGSRTHMSGSCT--QDRCFRCGEEGHLSPYCR-----KGIVC 371
Query: 455 YNCGKPGHLARDCDHA 502
CGK GH C A
Sbjct: 372 NLCGKRGHAFAQCPKA 387
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,965,106
Number of extensions: 663924
Number of successful extensions: 2771
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2523
Number of HSP's successfully gapped: 11
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012247
(1116 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038521.1| cellular nucleic acid-binding protein isoform 1... 359 2e-99
Alignment gi|NP_001103216.1| cellular nucleic acid-binding protein isofor... 350 9e-97
Alignment gi|NP_001103215.1| cellular nucleic acid-binding protein isofor... 346 2e-95
Alignment gi|NP_083434.1| zinc finger CCHC domain-containing protein 13 [... 278 5e-75
Alignment gi|NP_663428.2| zinc finger CCHC domain-containing protein 9 [M... 56 4e-08
Alignment gi|NP_780335.1| zinc finger, CCHC domain containing 3 [Mus musc... 55 1e-07
Alignment gi|NP_613056.2| zinc finger CCHC domain-containing protein 7 [M... 53 5e-07
>ref|NP_038521.1| cellular nucleic acid-binding protein isoform 1 [Mus musculus].
Length = 178
Score = 359 bits (921), Expect = 2e-99
Identities = 162/178 (91%), Positives = 162/178 (91%), Gaps = 1/178 (0%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 341 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 517
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 61 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 120
Query: 518 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 178
>ref|NP_001103216.1| cellular nucleic acid-binding protein isoform 3 [Mus musculus].
Length = 170
Score = 350 bits (899), Expect = 9e-97
Identities = 158/177 (89%), Positives = 159/177 (89%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 54 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 113
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 114 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|NP_001103215.1| cellular nucleic acid-binding protein isoform 2 [Mus musculus].
Length = 171
Score = 346 bits (887), Expect = 2e-95
Identities = 158/178 (88%), Positives = 159/178 (89%), Gaps = 1/178 (0%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 341 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 517
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 54 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 113
Query: 518 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 114 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 171
>ref|NP_083434.1| zinc finger CCHC domain-containing protein 13 [Mus musculus].
Length = 170
Score = 278 bits (711), Expect = 5e-75
Identities = 121/177 (68%), Positives = 137/177 (77%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSS CFKCG SGHWARECP RG Q +++ D+CYRCGE+
Sbjct: 1 MSSKSCFKCGHSGHWARECPKGGTRGRTARGRT-------RGPQCSTANQSDVCYRCGET 53
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GH AKDCDL +D CYNCGR GHIAKDC + KREREQCCY C +PGHLARDC+ +EQKCY
Sbjct: 54 GHYAKDCDLLQDTCYNCGRRGHIAKDCTQAKREREQCCYICSQPGHLARDCNRQEEQKCY 113
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
+CGEFGHIQKDCT++KCYRCGE GH+A+NCSKTSEV+CYRCGESGHLAREC IEATA
Sbjct: 114 TCGEFGHIQKDCTQIKCYRCGENGHMAVNCSKTSEVSCYRCGESGHLARECPIEATA 170
>ref|NP_663428.2| zinc finger CCHC domain-containing protein 9 [Mus musculus].
Length = 271
Score = 56.2 bits (134), Expect = 4e-08
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Frame = +2
Query: 317 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 460
+C+ C + GH DC D+ CY CG H C+ +P C+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 461 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 556
CG+ GHL+R C +AD C CG H +KDC
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDC 226
Score = 52.4 bits (124), Expect = 6e-07
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 23/107 (21%)
Frame = +2
Query: 422 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGHIQKDCTK------- 562
++ ++ C++C +PGH DC E + CY CG H C
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALG 179
Query: 563 ----VKCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 673
KC+ CGE GH++ +C ++ +C CG H ++C
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDC 226
>ref|NP_780335.1| zinc finger, CCHC domain containing 3 [Mus musculus].
Length = 400
Score = 54.7 bits (130), Expect = 1e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +2
Query: 515 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 673
C+ CG H+ CT+ +C+RCGE GH++ C K + C CG+ GH +C
Sbjct: 332 CFKCGSRTHMSGTCTQDRCFRCGEEGHLSPYCRKV--IVCNLCGKRGHAFAQC 382
Score = 50.1 bits (118), Expect = 3e-06
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +2
Query: 275 SDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCC 454
++RG+ + P C++CG H++ C +D C+ CG GH++ C+ + C
Sbjct: 318 AERGYSWYKGQ-PKTCFKCGSRTHMSGTCT--QDRCFRCGEEGHLSPYCR-----KVIVC 369
Query: 455 YNCGKPGHLARDCDHA 502
CGK GH C A
Sbjct: 370 NLCGKRGHAFAQCPKA 385
Score = 49.7 bits (117), Expect = 4e-06
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 452 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKT--S 622
C+ CG H++ C + +C+ CGE GH+ C KV C CG+ GH C K +
Sbjct: 332 CFKCGSRTHMSGTCT---QDRCFRCGEEGHLSPYCRKVIVCNLCGKRGHAFAQCPKAVHN 388
Query: 623 EVNCYRCGESGH 658
V +GH
Sbjct: 389 SVTAQLTSVAGH 400
>ref|NP_613056.2| zinc finger CCHC domain-containing protein 7 [Mus musculus].
Length = 541
Score = 52.8 bits (125), Expect = 5e-07
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 28/127 (22%)
Frame = +2
Query: 380 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCG---EFGH--I 544
C NC + GH++K+C P++ R CC C + GHL C + C C H
Sbjct: 238 CRNCDKRGHLSKNCPLPQKVR-ACCL-CSERGHLQYGC---PARYCLDCSLPMSSNHRCF 292
Query: 545 QKDCTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESG 655
++ + +C RC GH A C +++ V CY C + G
Sbjct: 293 ERLSWRKRCDRCDMIGHHADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQKG 352
Query: 656 HLARECT 676
H ECT
Sbjct: 353 HYGHECT 359
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,335,906
Number of extensions: 917401
Number of successful extensions: 4018
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3638
Number of HSP's successfully gapped: 10
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012247
(1116 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003409.1| cellular nucleic acid-binding protein isoform 3... 363 e-100
Alignment gi|NP_001120665.1| cellular nucleic acid-binding protein isofor... 359 3e-99
Alignment gi|NP_001120664.1| cellular nucleic acid-binding protein isofor... 358 4e-99
Alignment gi|NP_001120668.1| cellular nucleic acid-binding protein isofor... 350 1e-96
Alignment gi|NP_001120667.1| cellular nucleic acid-binding protein isofor... 346 3e-95
Alignment gi|NP_001120666.1| cellular nucleic acid-binding protein isofor... 345 3e-95
Alignment gi|NP_976048.1| zinc finger CCHC domain-containing protein 13 [... 202 5e-52
Alignment gi|NP_115602.2| zinc finger CCHC domain-containing protein 7 [H... 62 1e-09
Alignment gi|NP_001124508.1| zinc finger CCHC domain-containing protein 9... 57 4e-08
Alignment gi|NP_001124507.1| zinc finger CCHC domain-containing protein 9... 57 4e-08
>ref|NP_003409.1| cellular nucleic acid-binding protein isoform 3 [Homo sapiens].
Length = 177
Score = 363 bits (933), Expect = e-100
Identities = 162/177 (91%), Positives = 162/177 (91%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 61 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 120
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
>ref|NP_001120665.1| cellular nucleic acid-binding protein isoform 2 [Homo sapiens].
Length = 178
Score = 359 bits (921), Expect = 3e-99
Identities = 162/178 (91%), Positives = 162/178 (91%), Gaps = 1/178 (0%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 341 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 517
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 61 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 120
Query: 518 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 178
>ref|NP_001120664.1| cellular nucleic acid-binding protein isoform 1 [Homo sapiens].
Length = 179
Score = 358 bits (920), Expect = 4e-99
Identities = 162/179 (90%), Positives = 162/179 (90%), Gaps = 2/179 (1%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT FTSDRGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 341 GHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 514
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
Sbjct: 61 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 120
Query: 515 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 179
>ref|NP_001120668.1| cellular nucleic acid-binding protein isoform 6 [Homo sapiens].
Length = 170
Score = 350 bits (899), Expect = 1e-96
Identities = 158/177 (89%), Positives = 159/177 (89%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 54 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 113
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 114 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|NP_001120667.1| cellular nucleic acid-binding protein isoform 5 [Homo sapiens].
Length = 171
Score = 346 bits (887), Expect = 3e-95
Identities = 158/178 (88%), Positives = 159/178 (89%), Gaps = 1/178 (0%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 341 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 517
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 54 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 113
Query: 518 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 114 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 171
>ref|NP_001120666.1| cellular nucleic acid-binding protein isoform 4 [Homo sapiens].
Length = 172
Score = 345 bits (886), Expect = 3e-95
Identities = 158/179 (88%), Positives = 159/179 (88%), Gaps = 2/179 (1%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSSNECFKCGRSGHWARECPT + RGFQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMR-------SRGRGFQFVSSSLPDICYRCGES 53
Query: 341 GHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 514
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
Sbjct: 54 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 113
Query: 515 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 691
CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 114 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 172
>ref|NP_976048.1| zinc finger CCHC domain-containing protein 13 [Homo sapiens].
Length = 166
Score = 202 bits (514), Expect = 5e-52
Identities = 94/152 (61%), Positives = 103/152 (67%)
Frame = +2
Query: 161 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXXFTSDRGFQFVSSSLPDICYRCGES 340
MSS + F CG SGHWAR CP RG Q S++L CY CGES
Sbjct: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHG-------RGSQCGSTTLSYTCYCCGES 53
Query: 341 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 520
G AK+C L + CYNCGR GHIAKDCK+PKRER Q CY CG+ GHLARDCD EQKCY
Sbjct: 54 GRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCY 113
Query: 521 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSK 616
SCG+ GHIQKDC +VKCYRCGE GHVAINCSK
Sbjct: 114 SCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
>ref|NP_115602.2| zinc finger CCHC domain-containing protein 7 [Homo sapiens].
Length = 543
Score = 62.0 bits (149), Expect = 1e-09
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
Frame = +2
Query: 290 QFVSSSLPDICYRCGESGHLAKDCDLQEDA--CYNCGRGGHIAKDCKEPKREREQCCYNC 463
++ S++ IC C + GHL+K+C L C+ C R GH+ C P C C
Sbjct: 233 RYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAP------LCEYC 286
Query: 464 GKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-----KCYRCGETGHVAINCSKTS 622
P L C H+ +++C C GH CT++ + G ++
Sbjct: 287 PVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSA 346
Query: 623 EVNCYRCGESGHLAREC 673
CY C + GH EC
Sbjct: 347 LAYCYHCAQKGHYGHEC 363
>ref|NP_001124508.1| zinc finger CCHC domain-containing protein 9 [Homo sapiens].
Length = 271
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Frame = +2
Query: 317 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 460
+C+ C + GH DC D+ CY CG H CK +P C+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 461 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 556
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Frame = +2
Query: 422 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 565
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 566 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 673
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
>ref|NP_001124507.1| zinc finger CCHC domain-containing protein 9 [Homo sapiens].
Length = 271
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Frame = +2
Query: 317 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 460
+C+ C + GH DC D+ CY CG H CK +P C+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 461 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 556
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Frame = +2
Query: 422 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 565
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 566 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 673
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,552,948
Number of extensions: 1077861
Number of successful extensions: 5836
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4862
Number of HSP's successfully gapped: 22
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012247
(1116 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894790.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 418 e-114
gb|GL892166.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 394 e-107
gb|GL893557.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 299 2e-78
Sscrofa_ChrX 188 4e-45
gb|GL896499.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 170 1e-39
>gb|GL894790.1| Sus scrofa unplaced genomic scaffold chrU_scaffold342
Length = 658
Score = 418 bits (211), Expect = e-114
Identities = 245/256 (95%), Gaps = 2/256 (0%)
Strand = Plus / Plus
Query: 848 tcgactttctgcatttaactacnnnnnnngtttatgtttagtttggtagaggtgttatgt 907
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10 tcgactttctgcatttaactacaaaaaaagtttatgtttagtttggtagaggtgttatgt 69
Query: 908 ataatgctttgttaaagaaccccctttccacgccactggtgaatagggattgatgaatgg 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ataatgctttgttaaagaaccccctttccacgccactggtgaatagggattgatgaatgg 129
Query: 968 gaagagttgagtcagaccagtaagcccgttctgggtttctcgaatatgttcccatgtagg 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gaagagttgagtcagaccagtaagcccgttctgggtttctcgaatatgttcccatgtagg 189
Query: 1028 aggtaaaaccaattctggaagtgtctatgaacttccgtaaat-actttttaatttagcat 1086
|||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 190 aggtaaaaccaattctggaagtgtctatgaacttccgtaaataacttttaattttagcat 249
Query: 1087 -atgatggccttggat 1101
|||||||||||||||
Sbjct: 250 aatgatggccttggat 265
>gb|GL892166.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1058
Length = 624
Score = 394 bits (199), Expect = e-107
Identities = 202/203 (99%)
Strand = Plus / Minus
Query: 377 gcctgctataactgcggtagaggaggccacattgccaaggactgcaaggagcccaagaga 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gcctgctataactgcggtagaggaggccacattgccaaggactgcaaggagcccaagaga 214
Query: 437 gagcgagagcagtgctgctacaactgcggcaaacccggccacctggcccgcgactgtgac 496
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 213 gagcgagagcagtgctgctacaactgcggcaaacctggccacctggcccgcgactgtgac 154
Query: 497 catgcggatgagcagaagtgctattcttgtggagagtttgggcacattcagaaagactgc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 catgcggatgagcagaagtgctattcttgtggagagtttgggcacattcagaaagactgc 94
Query: 557 accaaagtgaagtgctataggtg 579
|||||||||||||||||||||||
Sbjct: 93 accaaagtgaagtgctataggtg 71
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 283 aggtttccagtttgtttcttcgtctcttccagacatctgttaccgctgtggtgagtctgg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aggtttccagtttgtttcttcgtctcttccagacatctgttaccgctgtggtgagtctgg 481
Query: 343 tcatcttgccaaggattgtgatctccaagaggatg 377
|||||||||||||||||||||||||||||||||||
Sbjct: 480 tcatcttgccaaggattgtgatctccaagaggatg 446
>gb|GL893557.1| Sus scrofa unplaced genomic scaffold chrU_scaffold231
Length = 294
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 574 taggtgtggcgaaactggtcatgtagccatcaactgcagcaagacgagtgaagtcaactg 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 taggtgtggcgaaactggtcatgtagccatcaactgcagcaagacgagtgaagtcaactg 92
Query: 634 ttaccgctgtggcgagtcagggcaccttgcacgggaatgcacgattgaggccacagctta 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ttaccgctgtggcgagtcagggcaccttgcacgggaatgcacgattgaggccacagctta 32
Query: 694 attattttcctttgtcgcccctccttttctg 724
|||||||||||||||||||||||||||||||
Sbjct: 31 attattttcctttgtcgcccctccttttctg 1
>Sscrofa_ChrX
|| Length = 144288218
Score = 188 bits (95), Expect = 4e-45
Identities = 374/464 (80%), Gaps = 6/464 (1%)
Strand = Plus / Plus
Query: 316 catctgttaccgctgtggtgagtctggtcatcttgccaaggattgtgatctccaagagga 375
||||||||||||||| |||||| ||||||||| ||| ||| | ||||| || || |||||
Sbjct: 67541619 catctgttaccgctgcggtgagcctggtcatcatgctaagaactgtgaccttcaggagga 67541678
Query: 376 tgcctgctataactgcggtagaggaggccacattgccaaggactgcaaggagcccaagag 435
|||||| ||||| || | | | |||||||| ||||| ||||| | |||||| ||| |
Sbjct: 67541679 catctgctacaactgtgggaaaagtggccacatcgccaaagactgtatggagcctaagcg 67541738
Query: 436 agagcgagagcagtgctgctacaactgcggcaaacccggccacctggcccgcgactgtga 495
|||| |||| |||||||| |||| ||| ||| ||| ||||| ||||| |||||||||||
Sbjct: 67541739 agagagagaccagtgctgttacacctgtggccgaccaggccatctggcgcgcgactgtga 67541798
Query: 496 ccatgcggatgagcagaagtgctattcttgtggagagtttgggcacattcagaaagactg 555
|| | ||| |||||||||||||| ||||| || || ||| |||||||||||||||||
Sbjct: 67541799 ccgtcaggaagagcagaagtgctactcttgcggcgaacgtggccacattcagaaagactg 67541858
Query: 556 caccaaagtgaagtgctataggtgtggcgaaactggtcatgtagccatcaactgcagcaa 615
|||| |||| | ||| || | ||||| || || || ||||| |||||||||||||||||
Sbjct: 67541859 cacccaagtcaggtgttaccgttgtggtgagaccggccatgtggccatcaactgcagcaa 67541918
Query: 616 gacgagtgaagtcaactgttaccgctgtggcgagtcagggcaccttgcacgggaatgcac 675
| | || ||||||||||| |||||||||||||| || || || || || ||||||||| |
Sbjct: 67541919 gccaagcgaagtcaactgctaccgctgtggcgaatcgggccatctagcccgggaatgccc 67541978
Query: 676 gattgaggccacagcttaattattttcctttg----tcgcccctcctttt-ctgattgat 730
||||| | || ||||||| ||| |||||| || | ||||||||| |||||||||
Sbjct: 67541979 cattgaaactaccacttaatt-tttccctttgtccctcccacctccttttgctgattgat 67542037
Query: 731 ggttgtattattttctctgaatcctcttcactggccaaaggttg 774
||||| ||||||||||||| | ||||| ||| ||||||||||
Sbjct: 67542038 aattgtagtattttctctgaaacttcttctctgaccaaaggttg 67542081
Score = 91.7 bits (46), Expect = 8e-16
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 143 gaagatctaactgcagccatgagcagcaatgaatgcttcaagtgtggacgatctggccac 202
|||||||| || ||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 67541464 gaagatctcaccgcagccatgagcaataaggaatgcttcaagtgtggacgctctggccac 67541523
Query: 203 tgggcccggg 212
||||||||||
Sbjct: 67541524 tgggcccggg 67541533
>gb|GL896499.1| Sus scrofa unplaced genomic scaffold chrU_scaffold833
Length = 999
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 2 gtgcgcagcggcgtgtgtggggccgtgtgcagatccgcgtgtggcgcaggcaaggaccct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtgcgcagcggcgtgtgtggggccgtgtgcagatccgcgtgtggcgcaggcaaggaccct 486
Query: 62 gaaaataaacagccgctgtcttgcga 87
||||||||||||||||||||||||||
Sbjct: 485 gaaaataaacagccgctgtcttgcga 460
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 102 cctgcgtccgagtctccgccgctgcggaccgctcagacgccgaag 146
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cctgcgtccgagtctccgccgctgcggaccgctcagacgccgaag 315
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,943,646
Number of extensions: 141
Number of successful extensions: 141
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 8
Length of query: 1116
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1095
Effective length of database: 2,808,413,156
Effective search space: 3075212405820
Effective search space used: 3075212405820
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)