Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012248
(1128 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533724.2| PREDICTED: similar to cellular nucleic acid bin... 352 5e-97
Alignment gi|XP_857625.1| PREDICTED: similar to cellular nucleic acid bin... 347 9e-96
Alignment gi|XP_857749.1| PREDICTED: similar to cellular nucleic acid bin... 345 6e-95
Alignment gi|XP_849006.1| PREDICTED: similar to cellular nucleic acid bin... 345 6e-95
Alignment gi|XP_857588.1| PREDICTED: similar to cellular nucleic acid bin... 328 6e-90
Alignment gi|XP_857704.1| PREDICTED: similar to cellular nucleic acid bin... 328 8e-90
Alignment gi|XP_538733.2| PREDICTED: similar to zinc finger, CCHC domain ... 56 6e-08
Alignment gi|XP_852557.1| PREDICTED: similar to zinc finger, CCHC domain ... 55 9e-08
Alignment gi|XP_536305.1| PREDICTED: similar to zinc finger, CCHC domain ... 55 9e-08
>ref|XP_533724.2| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 1 [Canis familiaris].
Length = 170
Score = 352 bits (902), Expect = 5e-97
Identities = 156/170 (91%), Positives = 156/170 (91%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGESGHLAKDC
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 328 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 507
DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH
Sbjct: 61 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 120
Query: 508 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|XP_857625.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 4 [Canis familiaris].
Length = 160
Score = 347 bits (891), Expect = 9e-96
Identities = 156/170 (91%), Positives = 156/170 (91%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGESGHLAKDC
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGR----------FQFVSSSLPDICYRCGESGHLAKDC 50
Query: 328 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 507
DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH
Sbjct: 51 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 110
Query: 508 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 111 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 160
>ref|XP_857749.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 6 [Canis familiaris].
Length = 177
Score = 345 bits (884), Expect = 6e-95
Identities = 156/177 (88%), Positives = 156/177 (88%), Gaps = 7/177 (3%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXX-------FQFVSSSLPDICYRCGES 306
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 307 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 486
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 61 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 120
Query: 487 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
>ref|XP_849006.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 2 [Canis familiaris].
Length = 177
Score = 345 bits (884), Expect = 6e-95
Identities = 156/177 (88%), Positives = 156/177 (88%), Gaps = 7/177 (3%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXX-------FQFVSSSLPDICYRCGES 306
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 307 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 486
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 61 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 120
Query: 487 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
>ref|XP_857588.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 3 [Canis familiaris].
Length = 160
Score = 328 bits (841), Expect = 6e-90
Identities = 148/170 (87%), Positives = 149/170 (87%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSSNECFKCGRSGHWARECPT + S DICYRCGESGHLAKDC
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRG----------MRSRGRDICYRCGESGHLAKDC 50
Query: 328 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 507
DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH
Sbjct: 51 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 110
Query: 508 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 111 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 160
>ref|XP_857704.1| PREDICTED: similar to cellular nucleic acid binding protein 1
isoform 5 [Canis familiaris].
Length = 167
Score = 328 bits (840), Expect = 8e-90
Identities = 149/170 (87%), Positives = 149/170 (87%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSSNECFKCGRSGHWARECPT F S DICYRCGESGHLAKDC
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRG-GFTSDR--DICYRCGESGHLAKDC 57
Query: 328 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 507
DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH
Sbjct: 58 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 117
Query: 508 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 118 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 167
>ref|XP_538733.2| PREDICTED: similar to zinc finger, CCHC domain containing 7 [Canis
familiaris].
Length = 544
Score = 56.2 bits (134), Expect = 6e-08
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Frame = +1
Query: 346 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC-----GEFGHI 510
C NC + GH++K+C P++ R CC C + GHL C + C C +
Sbjct: 242 CRNCDKCGHLSKNCPLPQKVR-PCCL-CSERGHLQYAC---PARFCLGCSLPMSSTHRCL 296
Query: 511 QKDCTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESG 621
++ + +C RC GH A C +++ V CY CG+ G
Sbjct: 297 ERSSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCGQEG 356
Query: 622 HLARECT 642
H ECT
Sbjct: 357 HYGHECT 363
>ref|XP_852557.1| PREDICTED: similar to zinc finger, CCHC domain containing 9 [Canis
familiaris].
Length = 244
Score = 55.5 bits (132), Expect = 9e-08
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Frame = +1
Query: 283 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 426
+C+ C + GH DC D+ CY CG H CK +P C+
Sbjct: 102 VCFHCRKPGHGIADCPAALENQDMGTGMCYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 161
Query: 427 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 522
CG+ GHL+R C +AD C CG H +KDC
Sbjct: 162 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 199
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Frame = +1
Query: 388 KEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA 567
++ ++ C++C KPGH DC A E + G CYRCG T H
Sbjct: 93 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTG------------MCYRCGSTEHEI 140
Query: 568 INCSKTSE--------VNCYRCGESGHLAREC 639
C + C+ CGE GHL+R C
Sbjct: 141 TKCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 172
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 12/111 (10%)
Frame = +1
Query: 163 CFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDCDLQED 342
CF C + GH +CP +CYRCG + H C + D
Sbjct: 103 CFHCRKPGHGIADCPAALENQDMG--------------TGMCYRCGSTEHEITKCKAKVD 148
Query: 343 ---------ACYNCGRGGHIAKDCKE-PKREREQ--CCYNCGKPGHLARDC 459
C+ CG GH+++ C + PK CC CG H +DC
Sbjct: 149 PALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 199
>ref|XP_536305.1| PREDICTED: similar to zinc finger, CCHC domain containing 9 isoform
2 [Canis familiaris].
Length = 271
Score = 55.5 bits (132), Expect = 9e-08
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Frame = +1
Query: 283 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 426
+C+ C + GH DC D+ CY CG H CK +P C+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 427 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 522
CG+ GHL+R C +AD C CG H +KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 226
Score = 53.9 bits (128), Expect = 3e-07
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Frame = +1
Query: 388 KEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA 567
++ ++ C++C KPGH DC A E + G CYRCG T H
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTG------------ICYRCGSTEHEI 167
Query: 568 INCSKTSE--------VNCYRCGESGHLAREC 639
C + C+ CGE GHL+R C
Sbjct: 168 TKCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 199
Score = 52.4 bits (124), Expect = 8e-07
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 12/111 (10%)
Frame = +1
Query: 163 CFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDCDLQED 342
CF C + GH +CP ICYRCG + H C + D
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMGTG--------------ICYRCGSTEHEITKCKAKVD 175
Query: 343 ---------ACYNCGRGGHIAKDCKE-PKREREQ--CCYNCGKPGHLARDC 459
C+ CG GH+++ C + PK CC CG H +DC
Sbjct: 176 PALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 226
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,742,160
Number of extensions: 1085269
Number of successful extensions: 4763
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4209
Number of HSP's successfully gapped: 13
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012248
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012248
(1128 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029396.1| cellular nucleic acid-binding protein [Bos t... 352 5e-97
Alignment gi|NP_001193408.1| zinc finger protein 9 [Bos taurus]. 260 2e-69
Alignment gi|XP_001250569.1| PREDICTED: zinc finger protein 9 [Bos taurus]. 260 2e-69
Alignment gi|XP_002707894.1| PREDICTED: zinc finger protein 9-like [Bos t... 230 2e-60
Alignment gi|NP_001094525.1| zinc finger CCHC domain-containing protein 9... 56 7e-08
Alignment gi|NP_001039565.1| zinc finger CCHC domain-containing protein 7... 55 9e-08
Alignment gi|NP_001073703.1| zinc finger CCHC domain-containing protein 3... 54 2e-07
>ref|NP_001029396.1| cellular nucleic acid-binding protein [Bos taurus].
Length = 170
Score = 352 bits (902), Expect = 5e-97
Identities = 156/170 (91%), Positives = 156/170 (91%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGESGHLAKDC
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 328 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 507
DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH
Sbjct: 61 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 120
Query: 508 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|NP_001193408.1| zinc finger protein 9 [Bos taurus].
Length = 171
Score = 260 bits (664), Expect = 2e-69
Identities = 115/169 (68%), Positives = 127/169 (75%), Gaps = 1/169 (0%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXX-FQFVSSSLPDICYRCGESGHLAKD 324
MSS ECFKCGR GHWA C Q S++LP ICYRCG+ GH AKD
Sbjct: 1 MSSKECFKCGRVGHWAPACSKGGGARGRGARGRGHGAQCSSTTLPVICYRCGKFGHYAKD 60
Query: 325 CDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 504
CDL +D CYNCG+ GHIAKDC EPKRE E+CCY CG+PGHLARDCD +E+KCYSCG+ G
Sbjct: 61 CDLLDDICYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQEERKCYSCGKSG 120
Query: 505 HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEA 651
HIQK CT+VKCYRCGE GHVAINC K +EVNCYRCGESGHL REC IEA
Sbjct: 121 HIQKYCTQVKCYRCGEIGHVAINCRKMNEVNCYRCGESGHLTRECPIEA 169
>ref|XP_001250569.1| PREDICTED: zinc finger protein 9 [Bos taurus].
Length = 171
Score = 260 bits (664), Expect = 2e-69
Identities = 115/169 (68%), Positives = 127/169 (75%), Gaps = 1/169 (0%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXX-FQFVSSSLPDICYRCGESGHLAKD 324
MSS ECFKCGR GHWA C Q S++LP ICYRCG+ GH AKD
Sbjct: 1 MSSKECFKCGRVGHWAPACSKGGRARGRGARGRGHGAQCSSTTLPVICYRCGKFGHYAKD 60
Query: 325 CDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 504
CDL +D CYNCG+ GHIAKDC EPKRE E+CCY CG+PGHLARDCD +E+KCYSCG+ G
Sbjct: 61 CDLLDDICYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQEERKCYSCGKSG 120
Query: 505 HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEA 651
HIQK CT+VKCYRCGE GHVAINC K +EVNCYRCGESGHL REC IEA
Sbjct: 121 HIQKYCTQVKCYRCGEIGHVAINCRKMNEVNCYRCGESGHLTRECPIEA 169
>ref|XP_002707894.1| PREDICTED: zinc finger protein 9-like [Bos taurus].
Length = 170
Score = 230 bits (586), Expect = 2e-60
Identities = 107/169 (63%), Positives = 120/169 (71%), Gaps = 1/169 (0%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXX-FQFVSSSLPDICYRCGESGHLAKD 324
MSS ECFKCGR GHWA C Q S++LP ICYRCG+ GH AKD
Sbjct: 1 MSSKECFKCGRVGHWAPACSKGGRARGRGARGRGHGAQCSSTTLPVICYRCGKFGHYAKD 60
Query: 325 CDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 504
CDL +D CYNCG+ GHIAKDC EPKRE E + + GHLARDCD +E+KCYSCG+ G
Sbjct: 61 CDLLDDICYNCGKXGHIAKDCAEPKRE-ESVLLHLWQTGHLARDCDRQEERKCYSCGKXG 119
Query: 505 HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEA 651
HIQ+ CT+VKCYRCGE HVAINC K +EVNCYRCGESGHL REC IEA
Sbjct: 120 HIQQYCTQVKCYRCGEIVHVAINCRKMNEVNCYRCGESGHLTRECPIEA 168
>ref|NP_001094525.1| zinc finger CCHC domain-containing protein 9 [Bos taurus].
Length = 271
Score = 55.8 bits (133), Expect = 7e-08
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Frame = +1
Query: 283 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 426
+C+ C ++GH DC ++ CY CG H CK +P C+
Sbjct: 129 VCFHCRQTGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 427 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 522
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDC 226
Score = 49.3 bits (116), Expect = 6e-06
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 23/107 (21%)
Frame = +1
Query: 388 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 531
++ ++ C++C + GH DC A E + CY CG H I K KV
Sbjct: 120 RQAAKKNAMVCFHCRQTGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 532 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 639
KC+ CGE GH++ +C + C CG H+ ++C
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDC 226
>ref|NP_001039565.1| zinc finger CCHC domain-containing protein 7 [Bos taurus].
Length = 545
Score = 55.5 bits (132), Expect = 9e-08
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Frame = +1
Query: 346 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC-----GEFGHI 510
C NC + GH++K+C P++ R CC C + GHL C + C C +
Sbjct: 242 CRNCDKCGHLSKNCPFPQKVR-PCCL-CSERGHLQYAC---PARFCLGCSLPMSSTHRCL 296
Query: 511 QKDCTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESG 621
++ + +C RC GH A C +++ V CY CG+ G
Sbjct: 297 ERASWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEG 356
Query: 622 HLARECT 642
H ECT
Sbjct: 357 HYGHECT 363
>ref|NP_001073703.1| zinc finger CCHC domain-containing protein 3 [Bos taurus].
Length = 404
Score = 54.3 bits (129), Expect = 2e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 481 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 639
C+ CG H+ CT+ +C+RCGE GH++ C K + C CG+ GH +C
Sbjct: 336 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 386
Score = 52.0 bits (123), Expect = 1e-06
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 418 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 588
C+ CG H++ C + +C+ CGE GH+ C K + C CG+ GH C K +
Sbjct: 336 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 392
Query: 589 EVNCYRCGESGH 624
V G +GH
Sbjct: 393 SVGAQLTGVAGH 404
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,151,029
Number of extensions: 1065860
Number of successful extensions: 4421
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3970
Number of HSP's successfully gapped: 10
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012248
(1128 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926395.3| PREDICTED: cellular nucleic acid-binding pro... 284 6e-77
Alignment gi|XP_003360587.1| PREDICTED: cellular nucleic acid-binding pro... 226 2e-59
Alignment gi|XP_003122068.1| PREDICTED: zinc finger CCHC domain-containin... 57 2e-08
Alignment gi|XP_003123804.1| PREDICTED: zinc finger CCHC domain-containin... 55 9e-08
Alignment gi|XP_003134416.1| PREDICTED: zinc finger CCHC domain-containin... 54 1e-07
>ref|XP_001926395.3| PREDICTED: cellular nucleic acid-binding protein-like [Sus scrofa].
Length = 171
Score = 284 bits (727), Expect = 6e-77
Identities = 126/170 (74%), Positives = 135/170 (79%), Gaps = 1/170 (0%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSS-LPDICYRCGESGHLAKD 324
MS+ ECFKCGRSGHWAR CP SS+ LP ICYRCGE GH AK+
Sbjct: 1 MSNKECFKCGRSGHWARGCPKGGGARGRGSRGRGRGPHCSSTTLPIICYRCGEPGHHAKN 60
Query: 325 CDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 504
CDLQED CYNCG+ GHIAKDC EPKRER+QCCY CG+PGHLARDCD +EQKCYSCGE G
Sbjct: 61 CDLQEDICYNCGKSGHIAKDCMEPKRERDQCCYTCGRPGHLARDCDRQEEQKCYSCGERG 120
Query: 505 HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEAT 654
HIQKDCT+V+CYRCGETGHVAINCSK SEVNCYRCGESGHLAREC IE T
Sbjct: 121 HIQKDCTQVRCYRCGETGHVAINCSKPSEVNCYRCGESGHLARECPIETT 170
>ref|XP_003360587.1| PREDICTED: cellular nucleic acid-binding protein, partial [Sus
scrofa].
Length = 97
Score = 226 bits (576), Expect = 2e-59
Identities = 97/97 (100%), Positives = 97/97 (100%)
Frame = +1
Query: 253 FQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCG 432
FQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCG
Sbjct: 1 FQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCG 60
Query: 433 KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR 543
KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR
Sbjct: 61 KPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYR 97
Score = 98.6 bits (244), Expect = 6e-21
Identities = 41/81 (50%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Frame = +1
Query: 418 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK------CYRCGETGHVAINCS 579
CY CG+ GHLA+DCD E CY+CG GHI KDC + K CY CG+ GH+A +C
Sbjct: 12 CYRCGESGHLAKDCD-LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 70
Query: 580 KTSEVNCYRCGESGHLARECT 642
E CY CGE GH+ ++CT
Sbjct: 71 HADEQKCYSCGEFGHIQKDCT 91
Score = 67.0 bits (162), Expect = 2e-11
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
+ + C+ CGR GH A++C CY CG+ GHLA+DC
Sbjct: 27 LQEDACYNCGRGGHIAKDCKEP-----------------KREREQCCYNCGKPGHLARDC 69
Query: 328 D-LQEDACYNCGRGGHIAKDCKEPK 399
D E CY+CG GHI KDC + K
Sbjct: 70 DHADEQKCYSCGEFGHIQKDCTKVK 94
>ref|XP_003122068.1| PREDICTED: zinc finger CCHC domain-containing protein 7-like [Sus
scrofa].
Length = 545
Score = 57.0 bits (136), Expect = 2e-08
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Frame = +1
Query: 346 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH--IQKD 519
C NC + GH++K+C P++ R CC C + GHL C C H +++
Sbjct: 243 CRNCNKCGHLSKNCPFPQKVR-PCCL-CSERGHLQYACPARFCLDCSLPMSSAHRCLERP 300
Query: 520 CTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESGHLA 630
+ +C RC GH A C +++ V CY CG+ GH
Sbjct: 301 SWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEGHYG 360
Query: 631 RECT 642
ECT
Sbjct: 361 HECT 364
>ref|XP_003123804.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like [Sus
scrofa].
Length = 270
Score = 54.7 bits (130), Expect = 9e-08
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Frame = +1
Query: 283 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 426
+C+ C + GH DC ++ CY CG H CK +P C+
Sbjct: 128 VCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEIIKCKAQVDPALGEFPFAKCFV 187
Query: 427 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDCTKVK 534
CG+ GHL+R C +AD C CG H +KDC + K
Sbjct: 188 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESK 229
Score = 53.9 bits (128), Expect = 2e-07
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Frame = +1
Query: 388 KEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVA 567
++ ++ C++C +PGH DC A E + G CYRCG T H
Sbjct: 119 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGI------------CYRCGSTEHEI 166
Query: 568 INCSKTSE--------VNCYRCGESGHLAREC 639
I C + C+ CGE GHL+R C
Sbjct: 167 IKCKAQVDPALGEFPFAKCFVCGEMGHLSRSC 198
Score = 52.8 bits (125), Expect = 4e-07
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 12/111 (10%)
Frame = +1
Query: 163 CFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDCDLQED 342
CF C + GH +CP ICYRCG + H C Q D
Sbjct: 129 CFHCRQPGHGIADCPAALENQEMGTG--------------ICYRCGSTEHEIIKCKAQVD 174
Query: 343 ---------ACYNCGRGGHIAKDCKE-PKREREQ--CCYNCGKPGHLARDC 459
C+ CG GH+++ C + PK CC CG H +DC
Sbjct: 175 PALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDC 225
>ref|XP_003134416.1| PREDICTED: zinc finger CCHC domain-containing protein 3-like [Sus
scrofa].
Length = 402
Score = 54.3 bits (129), Expect = 1e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 481 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 639
C+ CG H+ CT+ +C+RCGE GH++ C K + C CG+ GH +C
Sbjct: 334 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 384
Score = 51.2 bits (121), Expect = 1e-06
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 418 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 588
C+ CG H++ C + +C+ CGE GH+ C K + C CG+ GH C K +
Sbjct: 334 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 390
Query: 589 EVNCYRCGESGH 624
V G +GH
Sbjct: 391 SVAAQLTGVAGH 402
Score = 48.5 bits (114), Expect = 7e-06
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 277 PDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 456
P C++CG H++ C +D C+ CG GH++ C+ + C CGK GH
Sbjct: 331 PKTCFKCGSRTHMSGSCT--QDRCFRCGEEGHLSPYCR-----KGIVCNLCGKRGHAFAQ 383
Query: 457 CDHA 468
C A
Sbjct: 384 CPKA 387
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,421,564
Number of extensions: 675409
Number of successful extensions: 2806
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2546
Number of HSP's successfully gapped: 11
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012248
(1128 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103216.1| cellular nucleic acid-binding protein isofor... 352 4e-97
Alignment gi|NP_001103215.1| cellular nucleic acid-binding protein isofor... 347 1e-95
Alignment gi|NP_038521.1| cellular nucleic acid-binding protein isoform 1... 340 1e-93
Alignment gi|NP_083434.1| zinc finger CCHC domain-containing protein 13 [... 280 1e-75
Alignment gi|NP_663428.2| zinc finger CCHC domain-containing protein 9 [M... 56 5e-08
Alignment gi|NP_780335.1| zinc finger, CCHC domain containing 3 [Mus musc... 55 1e-07
Alignment gi|NP_613056.2| zinc finger CCHC domain-containing protein 7 [M... 53 5e-07
>ref|NP_001103216.1| cellular nucleic acid-binding protein isoform 3 [Mus musculus].
Length = 170
Score = 352 bits (902), Expect = 4e-97
Identities = 156/170 (91%), Positives = 156/170 (91%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGESGHLAKDC
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 328 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 507
DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH
Sbjct: 61 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 120
Query: 508 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|NP_001103215.1| cellular nucleic acid-binding protein isoform 2 [Mus musculus].
Length = 171
Score = 347 bits (890), Expect = 1e-95
Identities = 156/171 (91%), Positives = 156/171 (91%), Gaps = 1/171 (0%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGESGHLAKDC
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 328 DLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 504
DLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG
Sbjct: 61 DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 120
Query: 505 HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 171
>ref|NP_038521.1| cellular nucleic acid-binding protein isoform 1 [Mus musculus].
Length = 178
Score = 340 bits (872), Expect = 1e-93
Identities = 156/178 (87%), Positives = 156/178 (87%), Gaps = 8/178 (4%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXX-------FQFVSSSLPDICYRCGES 306
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 307 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 483
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 61 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 120
Query: 484 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 178
>ref|NP_083434.1| zinc finger CCHC domain-containing protein 13 [Mus musculus].
Length = 170
Score = 280 bits (716), Expect = 1e-75
Identities = 119/170 (70%), Positives = 135/170 (79%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSS CFKCG SGHWARECP Q +++ D+CYRCGE+GH AKDC
Sbjct: 1 MSSKSCFKCGHSGHWARECPKGGTRGRTARGRTRGPQCSTANQSDVCYRCGETGHYAKDC 60
Query: 328 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 507
DL +D CYNCGR GHIAKDC + KREREQCCY C +PGHLARDC+ +EQKCY+CGEFGH
Sbjct: 61 DLLQDTCYNCGRRGHIAKDCTQAKREREQCCYICSQPGHLARDCNRQEEQKCYTCGEFGH 120
Query: 508 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
IQKDCT++KCYRCGE GH+A+NCSKTSEV+CYRCGESGHLAREC IEATA
Sbjct: 121 IQKDCTQIKCYRCGENGHMAVNCSKTSEVSCYRCGESGHLARECPIEATA 170
>ref|NP_663428.2| zinc finger CCHC domain-containing protein 9 [Mus musculus].
Length = 271
Score = 56.2 bits (134), Expect = 5e-08
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Frame = +1
Query: 283 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 426
+C+ C + GH DC D+ CY CG H C+ +P C+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 427 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 522
CG+ GHL+R C +AD C CG H +KDC
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDC 226
Score = 52.4 bits (124), Expect = 7e-07
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 23/107 (21%)
Frame = +1
Query: 388 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGHIQKDCTK------- 528
++ ++ C++C +PGH DC E + CY CG H C
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALG 179
Query: 529 ----VKCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 639
KC+ CGE GH++ +C ++ +C CG H ++C
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDC 226
>ref|NP_780335.1| zinc finger, CCHC domain containing 3 [Mus musculus].
Length = 400
Score = 54.7 bits (130), Expect = 1e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 481 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 639
C+ CG H+ CT+ +C+RCGE GH++ C K + C CG+ GH +C
Sbjct: 332 CFKCGSRTHMSGTCTQDRCFRCGEEGHLSPYCRKV--IVCNLCGKRGHAFAQC 382
Score = 49.7 bits (117), Expect = 4e-06
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 418 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKV-KCYRCGETGHVAINCSKT--S 588
C+ CG H++ C + +C+ CGE GH+ C KV C CG+ GH C K +
Sbjct: 332 CFKCGSRTHMSGTCT---QDRCFRCGEEGHLSPYCRKVIVCNLCGKRGHAFAQCPKAVHN 388
Query: 589 EVNCYRCGESGH 624
V +GH
Sbjct: 389 SVTAQLTSVAGH 400
>ref|NP_613056.2| zinc finger CCHC domain-containing protein 7 [Mus musculus].
Length = 541
Score = 52.8 bits (125), Expect = 5e-07
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 28/127 (22%)
Frame = +1
Query: 346 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCG---EFGH--I 510
C NC + GH++K+C P++ R CC C + GHL C + C C H
Sbjct: 238 CRNCDKRGHLSKNCPLPQKVR-ACCL-CSERGHLQYGC---PARYCLDCSLPMSSNHRCF 292
Query: 511 QKDCTKVKCYRCGETGHVAINC-----------------------SKTSEVNCYRCGESG 621
++ + +C RC GH A C +++ V CY C + G
Sbjct: 293 ERLSWRKRCDRCDMIGHHADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQKG 352
Query: 622 HLARECT 642
H ECT
Sbjct: 353 HYGHECT 359
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,940,483
Number of extensions: 934268
Number of successful extensions: 4068
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3671
Number of HSP's successfully gapped: 9
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012248
(1128 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001120668.1| cellular nucleic acid-binding protein isofor... 352 5e-97
Alignment gi|NP_001120667.1| cellular nucleic acid-binding protein isofor... 347 1e-95
Alignment gi|NP_001120666.1| cellular nucleic acid-binding protein isofor... 347 2e-95
Alignment gi|NP_003409.1| cellular nucleic acid-binding protein isoform 3... 345 6e-95
Alignment gi|NP_001120665.1| cellular nucleic acid-binding protein isofor... 340 1e-93
Alignment gi|NP_001120664.1| cellular nucleic acid-binding protein isofor... 340 2e-93
Alignment gi|NP_976048.1| zinc finger CCHC domain-containing protein 13 [... 204 1e-52
Alignment gi|NP_115602.2| zinc finger CCHC domain-containing protein 7 [H... 62 1e-09
Alignment gi|NP_001124508.1| zinc finger CCHC domain-containing protein 9... 57 4e-08
Alignment gi|NP_001124507.1| zinc finger CCHC domain-containing protein 9... 57 4e-08
>ref|NP_001120668.1| cellular nucleic acid-binding protein isoform 6 [Homo sapiens].
Length = 170
Score = 352 bits (902), Expect = 5e-97
Identities = 156/170 (91%), Positives = 156/170 (91%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGESGHLAKDC
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 328 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 507
DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH
Sbjct: 61 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 120
Query: 508 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 IQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170
>ref|NP_001120667.1| cellular nucleic acid-binding protein isoform 5 [Homo sapiens].
Length = 171
Score = 347 bits (890), Expect = 1e-95
Identities = 156/171 (91%), Positives = 156/171 (91%), Gaps = 1/171 (0%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGESGHLAKDC
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 328 DLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 504
DLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG
Sbjct: 61 DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 120
Query: 505 HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 171
>ref|NP_001120666.1| cellular nucleic acid-binding protein isoform 4 [Homo sapiens].
Length = 172
Score = 347 bits (889), Expect = 2e-95
Identities = 156/172 (90%), Positives = 156/172 (90%), Gaps = 2/172 (1%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGESGHLAKDC
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 328 DLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEF 501
DLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEF
Sbjct: 61 DLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEF 120
Query: 502 GHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
GHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 GHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 172
Score = 108 bits (270), Expect = 9e-24
Identities = 51/134 (38%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Frame = +1
Query: 127 AEDLTAAMSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGES 306
A+D C+ CGR GH A++C CY CG+
Sbjct: 57 AKDCDLQEDVEACYNCGRGGHIAKDCKEP-----------------KREREQCCYNCGKP 99
Query: 307 GHLAKDCD-LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 483
GHLA+DCD E CY+CG GHI KDC + K CY CG+ GH+A +C E C
Sbjct: 100 GHLARDCDHADEQKCYSCGEFGHIQKDCTKVK------CYRCGETGHVAINCSKTSEVNC 153
Query: 484 YSCGEFGHIQKDCT 525
Y CGE GH+ ++CT
Sbjct: 154 YRCGESGHLARECT 167
>ref|NP_003409.1| cellular nucleic acid-binding protein isoform 3 [Homo sapiens].
Length = 177
Score = 345 bits (884), Expect = 6e-95
Identities = 156/177 (88%), Positives = 156/177 (88%), Gaps = 7/177 (3%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXX-------FQFVSSSLPDICYRCGES 306
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 307 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 486
GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
Sbjct: 61 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 120
Query: 487 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177
>ref|NP_001120665.1| cellular nucleic acid-binding protein isoform 2 [Homo sapiens].
Length = 178
Score = 340 bits (872), Expect = 1e-93
Identities = 156/178 (87%), Positives = 156/178 (87%), Gaps = 8/178 (4%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXX-------FQFVSSSLPDICYRCGES 306
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 307 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 483
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
Sbjct: 61 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 120
Query: 484 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 178
>ref|NP_001120664.1| cellular nucleic acid-binding protein isoform 1 [Homo sapiens].
Length = 179
Score = 340 bits (871), Expect = 2e-93
Identities = 156/179 (87%), Positives = 156/179 (87%), Gaps = 9/179 (5%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXX-------FQFVSSSLPDICYRCGES 306
MSSNECFKCGRSGHWARECPT FQFVSSSLPDICYRCGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 307 GHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 480
GHLAKDCDLQED ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
Sbjct: 61 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 120
Query: 481 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 657
CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
Sbjct: 121 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 179
Score = 108 bits (270), Expect = 9e-24
Identities = 51/134 (38%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Frame = +1
Query: 127 AEDLTAAMSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGES 306
A+D C+ CGR GH A++C CY CG+
Sbjct: 64 AKDCDLQEDVEACYNCGRGGHIAKDCKEP-----------------KREREQCCYNCGKP 106
Query: 307 GHLAKDCD-LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 483
GHLA+DCD E CY+CG GHI KDC + K CY CG+ GH+A +C E C
Sbjct: 107 GHLARDCDHADEQKCYSCGEFGHIQKDCTKVK------CYRCGETGHVAINCSKTSEVNC 160
Query: 484 YSCGEFGHIQKDCT 525
Y CGE GH+ ++CT
Sbjct: 161 YRCGESGHLARECT 174
>ref|NP_976048.1| zinc finger CCHC domain-containing protein 13 [Homo sapiens].
Length = 166
Score = 204 bits (519), Expect = 1e-52
Identities = 92/145 (63%), Positives = 101/145 (69%)
Frame = +1
Query: 148 MSSNECFKCGRSGHWARECPTXXXXXXXXXXXXXXFQFVSSSLPDICYRCGESGHLAKDC 327
MSS + F CG SGHWAR CP Q S++L CY CGESG AK+C
Sbjct: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC 60
Query: 328 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 507
L + CYNCGR GHIAKDCK+PKRER Q CY CG+ GHLARDCD EQKCYSCG+ GH
Sbjct: 61 VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGH 120
Query: 508 IQKDCTKVKCYRCGETGHVAINCSK 582
IQKDC +VKCYRCGE GHVAINCSK
Sbjct: 121 IQKDCAQVKCYRCGEIGHVAINCSK 145
>ref|NP_115602.2| zinc finger CCHC domain-containing protein 7 [Homo sapiens].
Length = 543
Score = 62.0 bits (149), Expect = 1e-09
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
Frame = +1
Query: 256 QFVSSSLPDICYRCGESGHLAKDCDLQEDA--CYNCGRGGHIAKDCKEPKREREQCCYNC 429
++ S++ IC C + GHL+K+C L C+ C R GH+ C P C C
Sbjct: 233 RYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAP------LCEYC 286
Query: 430 GKPGHLARDC--DHADEQKCYSCGEFGHIQKDCTKV-----KCYRCGETGHVAINCSKTS 588
P L C H+ +++C C GH CT++ + G ++
Sbjct: 287 PVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSA 346
Query: 589 EVNCYRCGESGHLAREC 639
CY C + GH EC
Sbjct: 347 LAYCYHCAQKGHYGHEC 363
>ref|NP_001124508.1| zinc finger CCHC domain-containing protein 9 [Homo sapiens].
Length = 271
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Frame = +1
Query: 283 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 426
+C+ C + GH DC D+ CY CG H CK +P C+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 427 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 522
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Frame = +1
Query: 388 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 531
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 532 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 639
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
>ref|NP_001124507.1| zinc finger CCHC domain-containing protein 9 [Homo sapiens].
Length = 271
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Frame = +1
Query: 283 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 426
+C+ C + GH DC D+ CY CG H CK +P C+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 427 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 522
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Frame = +1
Query: 388 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 531
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 532 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 639
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,283,874
Number of extensions: 1101572
Number of successful extensions: 5992
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4946
Number of HSP's successfully gapped: 23
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012248
(1128 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894790.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 494 e-137
gb|GL892166.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 387 e-104
gb|GL893557.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 299 2e-78
Sscrofa_ChrX 180 1e-42
gb|GL896499.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 147 2e-32
>gb|GL894790.1| Sus scrofa unplaced genomic scaffold chrU_scaffold342
Length = 658
Score = 494 bits (249), Expect = e-137
Identities = 303/318 (95%), Gaps = 4/318 (1%)
Strand = Plus / Plus
Query: 814 tcgactttctgcatttaactacnnnnnnngtttatgtttagtttggtagaggtgttatgt 873
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10 tcgactttctgcatttaactacaaaaaaagtttatgtttagtttggtagaggtgttatgt 69
Query: 874 ataatgctttgttaaagaaccccctttccacgccactggtgaatagggattgatgaatgg 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ataatgctttgttaaagaaccccctttccacgccactggtgaatagggattgatgaatgg 129
Query: 934 gaagagttgagtcagaccagtaagcccggtctggggttctcgaatatgttcccatgtagg 993
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 130 gaagagttgagtcagaccagtaagcccgttctgggtttctcgaatatgttcccatgtagg 189
Query: 994 aggtaaaaccatttctggaagtgtctatgaacttccgtaaataactttt-attttagcat 1052
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 190 aggtaaaaccaattctggaagtgtctatgaacttccgtaaataacttttaattttagcat 249
Query: 1053 aatgatggccttgga-tgtctgaacctcagtagctatt-aataacatcaagtaacatctg 1110
||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 250 aatgatggccttggattgtctg-acctcagtagctattaaataacatcaagtaacatctg 308
Query: 1111 tatcagggcctacataga 1128
||||||| ||||||||||
Sbjct: 309 tatcaggccctacataga 326
>gb|GL892166.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1058
Length = 624
Score = 387 bits (195), Expect = e-104
Identities = 201/203 (99%)
Strand = Plus / Minus
Query: 343 gcctgctataactgcggtagaggaggccacattgccaaggactgcaaggagcccaagaga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gcctgctataactgcggtagaggaggccacattgccaaggactgcaaggagcccaagaga 214
Query: 403 gagcgagagcagtgctgctacaactgcggcaaacccggccacctggcccgcgactgtgac 462
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 213 gagcgagagcagtgctgctacaactgcggcaaacctggccacctggcccgcgactgtgac 154
Query: 463 cacgcggatgagcagaagtgctattcttgtggagagtttgggcacattcagaaagactgc 522
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 catgcggatgagcagaagtgctattcttgtggagagtttgggcacattcagaaagactgc 94
Query: 523 accaaagtgaagtgctataggtg 545
|||||||||||||||||||||||
Sbjct: 93 accaaagtgaagtgctataggtg 71
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 249 aggtttccagtttgtttcttcgtctcttccagacatctgttaccgctgtggtgagtctgg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aggtttccagtttgtttcttcgtctcttccagacatctgttaccgctgtggtgagtctgg 481
Query: 309 tcatcttgccaaggattgtgatctccaagaggatg 343
|||||||||||||||||||||||||||||||||||
Sbjct: 480 tcatcttgccaaggattgtgatctccaagaggatg 446
>gb|GL893557.1| Sus scrofa unplaced genomic scaffold chrU_scaffold231
Length = 294
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 540 taggtgtggcgaaactggtcatgtagccatcaactgcagcaagacgagtgaagtcaactg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 taggtgtggcgaaactggtcatgtagccatcaactgcagcaagacgagtgaagtcaactg 92
Query: 600 ttaccgctgtggcgagtcagggcaccttgcacgggaatgcacgattgaggccacagctta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ttaccgctgtggcgagtcagggcaccttgcacgggaatgcacgattgaggccacagctta 32
Query: 660 attattttcctttgtcgcccctccttttctg 690
|||||||||||||||||||||||||||||||
Sbjct: 31 attattttcctttgtcgcccctccttttctg 1
>Sscrofa_ChrX
|| Length = 144288218
Score = 180 bits (91), Expect = 1e-42
Identities = 373/464 (80%), Gaps = 6/464 (1%)
Strand = Plus / Plus
Query: 282 catctgttaccgctgtggtgagtctggtcatcttgccaaggattgtgatctccaagagga 341
||||||||||||||| |||||| ||||||||| ||| ||| | ||||| || || |||||
Sbjct: 67541619 catctgttaccgctgcggtgagcctggtcatcatgctaagaactgtgaccttcaggagga 67541678
Query: 342 tgcctgctataactgcggtagaggaggccacattgccaaggactgcaaggagcccaagag 401
|||||| ||||| || | | | |||||||| ||||| ||||| | |||||| ||| |
Sbjct: 67541679 catctgctacaactgtgggaaaagtggccacatcgccaaagactgtatggagcctaagcg 67541738
Query: 402 agagcgagagcagtgctgctacaactgcggcaaacccggccacctggcccgcgactgtga 461
|||| |||| |||||||| |||| ||| ||| ||| ||||| ||||| |||||||||||
Sbjct: 67541739 agagagagaccagtgctgttacacctgtggccgaccaggccatctggcgcgcgactgtga 67541798
Query: 462 ccacgcggatgagcagaagtgctattcttgtggagagtttgggcacattcagaaagactg 521
|| ||| |||||||||||||| ||||| || || ||| |||||||||||||||||
Sbjct: 67541799 ccgtcaggaagagcagaagtgctactcttgcggcgaacgtggccacattcagaaagactg 67541858
Query: 522 caccaaagtgaagtgctataggtgtggcgaaactggtcatgtagccatcaactgcagcaa 581
|||| |||| | ||| || | ||||| || || || ||||| |||||||||||||||||
Sbjct: 67541859 cacccaagtcaggtgttaccgttgtggtgagaccggccatgtggccatcaactgcagcaa 67541918
Query: 582 gacgagtgaagtcaactgttaccgctgtggcgagtcagggcaccttgcacgggaatgcac 641
| | || ||||||||||| |||||||||||||| || || || || || ||||||||| |
Sbjct: 67541919 gccaagcgaagtcaactgctaccgctgtggcgaatcgggccatctagcccgggaatgccc 67541978
Query: 642 gattgaggccacagcttaattattttcctttg----tcgcccctcctttt-ctgattgat 696
||||| | || ||||||| ||| |||||| || | ||||||||| |||||||||
Sbjct: 67541979 cattgaaactaccacttaatt-tttccctttgtccctcccacctccttttgctgattgat 67542037
Query: 697 ggttgtattattttctctgaatcctcttcactggccaaaggttg 740
||||| ||||||||||||| | ||||| ||| ||||||||||
Sbjct: 67542038 aattgtagtattttctctgaaacttcttctctgaccaaaggttg 67542081
Score = 91.7 bits (46), Expect = 8e-16
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 130 gaagatctaactgcagccatgagcagcaatgaatgcttcaagtgtggacgatctggccac 189
|||||||| || ||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 67541464 gaagatctcaccgcagccatgagcaataaggaatgcttcaagtgtggacgctctggccac 67541523
Query: 190 tgggcccggg 199
||||||||||
Sbjct: 67541524 tgggcccggg 67541533
>gb|GL896499.1| Sus scrofa unplaced genomic scaffold chrU_scaffold833
Length = 999
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 1 gtgtgtggggccgtgtgcagatccgcgtgtggcgcaggcaaggaccctgaaaataaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtgtgtggggccgtgtgcagatccgcgtgtggcgcaggcaaggaccctgaaaataaacag 474
Query: 61 ccgctgtcttgcga 74
||||||||||||||
Sbjct: 473 ccgctgtcttgcga 460
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 89 cctgcgtccgagtctccgccgctgcggaccgctcagacgccgaag 133
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cctgcgtccgagtctccgccgctgcggaccgctcagacgccgaag 315
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,212,080
Number of extensions: 163
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 8
Length of query: 1128
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1107
Effective length of database: 2,808,413,156
Effective search space: 3108913363692
Effective search space used: 3108913363692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)