BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012251
(1656 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_549045.1| PREDICTED: similar to V-set and immunoglobulin ... 600 e-171
Alignment gi|XP_854373.1| PREDICTED: similar to Cell surface A33 antigen ... 58 3e-08
Alignment gi|XP_855194.1| PREDICTED: similar to Basement membrane-specifi... 57 7e-08
Alignment gi|XP_535982.2| PREDICTED: similar to titin isoform N2-B [Canis... 55 2e-07
Alignment gi|XP_538134.2| PREDICTED: similar to V-set and immunoglobulin ... 54 6e-07
Alignment gi|XP_548841.2| PREDICTED: similar to adlican [Canis familiaris]. 53 1e-06
Alignment gi|XP_546389.2| PREDICTED: similar to junctional adhesion molec... 52 2e-06
Alignment gi|XP_547438.2| PREDICTED: similar to High Incidence of Males (... 50 5e-06
Alignment gi|XP_544829.2| PREDICTED: similar to neural cell adhesion mole... 50 6e-06
Alignment gi|XP_532128.2| PREDICTED: similar to MAM domain containing gly... 50 6e-06
>ref|XP_549045.1| PREDICTED: similar to V-set and immunoglobulin domain containing
protein 4 precursor (Z39Ig protein) [Canis familiaris].
Length = 394
Score = 600 bits (1548), Expect = e-171
Identities = 288/384 (75%), Positives = 320/384 (83%)
Frame = +1
Query: 190 VTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGD 369
V GHPILE P+SVTGPWKGDVNIPCTYGPLQGYTQV+VKWLVQ G DPVT+FLRDSSGD
Sbjct: 11 VPSGHPILEAPESVTGPWKGDVNIPCTYGPLQGYTQVMVKWLVQRGWDPVTIFLRDSSGD 70
Query: 370 HIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHV 549
HIQ AKYRGRL VNHEVPGDVSLQLNTLEMDD+SHYTCEVTWQTP GNQVVRDKII+L +
Sbjct: 71 HIQLAKYRGRLQVNHEVPGDVSLQLNTLEMDDRSHYTCEVTWQTPSGNQVVRDKIIDLRI 130
Query: 550 QKLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALGT 729
QK+SVSKPTVTTGSGYGFTVPQGMRISLQCQA GSPPISY WYK+QT N+ PIK+ L T
Sbjct: 131 QKVSVSKPTVTTGSGYGFTVPQGMRISLQCQAWGSPPISYVWYKEQTNNQEPIKVAVLST 190
Query: 730 LLFKPAVVTDSGSYFCTAKGRVGSEQHSDTVKFVVKDSSNPLEAKTKTPPTMQSPLEAXX 909
LLFK A+V DSGSYFC AKGRVGSEQ S+ VKFVVKDSS PL+ KT+ P TMQSPLE
Sbjct: 191 LLFKHAMVADSGSYFCAAKGRVGSEQRSNIVKFVVKDSSKPLKTKTEAPTTMQSPLEETS 250
Query: 910 XXXXXXXXXXEMDGYIEKTSTGPGKGLPIFAIILIISLCCIMVITLTYIMLCRKTSQQEH 1089
E+D Y+ S PGKGLP+F+I+LIISLCCI+V + Y+M+CRKTSQQEH
Sbjct: 251 TVKLIWKWTTEVDVYLGAASAEPGKGLPVFSIVLIISLCCIVVFIMAYVMVCRKTSQQEH 310
Query: 1090 VYEVARVHAREASDSGESMRVAIFASGCSSEDPPSQTLGNDYSDEPCLGQEYQIIAQVNG 1269
VYEVAR+H R+A +SGE+ RVAIF SGCSSE+P SQT GNDYSD+ CLGQEYQII Q+N
Sbjct: 311 VYEVARIHTRQARNSGENWRVAIFTSGCSSEEPSSQTPGNDYSDDTCLGQEYQIITQINS 370
Query: 1270 DYTRLLHTVPRNYEHPTTKGKGVC 1341
DYT LLHTV +YE TK + VC
Sbjct: 371 DYTHLLHTVSPDYELLATKDERVC 394
>ref|XP_854373.1| PREDICTED: similar to Cell surface A33 antigen precursor
(Glycoprotein A33) [Canis familiaris].
Length = 365
Score = 57.8 bits (138), Expect = 3e-08
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 6/217 (2%)
Frame = +1
Query: 190 VTYGHPILEVPKSVTGPWKG-DVNIPCTYGPLQGYTQVLVKW--LVQHGSDPVTVFLRDS 360
VT +E P+ V +G V +PCTY ++W L++ ++ V ++ +
Sbjct: 68 VTVNAISVETPQGVLKAARGKSVTLPCTYQTSASDRNGFIQWDKLLRTHTEKVLIW-QFL 126
Query: 361 SGDHIQQAKYRGRLHVNHEVP-GDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKII 537
+I Y+ R++++ D S+ ++ L MDD Y C V+ + D + ++
Sbjct: 127 EKRYIYGELYKNRVNISKNAEQSDASITIDQLTMDDNGTYECSVSLMS-DMMGTSQSRV- 184
Query: 538 ELHVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQA-QGSPPISYAWYKKQTKNEAPIKI 714
+L V P T G G I L CQ+ +GSP Y+W N+
Sbjct: 185 -----RLLVLVPPSTPDCGIEGETVIGNNIQLTCQSKEGSPAPQYSWKSYDILNKERPAA 239
Query: 715 GALGTLLFKPAVVTD-SGSYFCTAKGRVGSEQHSDTV 822
G + TD SG Y CT+ VG E + TV
Sbjct: 240 PVTGQTFSLKNISTDMSGYYICTSSNEVGMESCNITV 276
>ref|XP_855194.1| PREDICTED: similar to Basement membrane-specific heparan sulfate
proteoglycan core protein precursor (HSPG) (Perlecan)
(PLC) [Canis familiaris].
Length = 1740
Score = 56.6 bits (135), Expect = 7e-08
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Frame = +1
Query: 373 IQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQ 552
I +K R L H++ GD +L + + D Y C T +P G+ + I LHV+
Sbjct: 669 IHWSKLRSPLPWQHQLQGD-TLIIPRVAQQDSGQYICNAT--SPAGHA---EATIALHVE 722
Query: 553 KLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALGTL 732
S P TT + +V G + LQC A G+PP+++ W + P + A L
Sbjct: 723 ----SPPYATTVPEHT-SVRAGETVQLQCLAHGTPPLTFQW--SRVGGSLPARATARNEL 775
Query: 733 L-FKPAVVTDSGSYFCTAKGRVGSEQ 807
L F+ DSG Y C +VGS +
Sbjct: 776 LRFESVAPEDSGRYRCQVTNKVGSAE 801
>ref|XP_535982.2| PREDICTED: similar to titin isoform N2-B [Canis familiaris].
Length = 12085
Score = 55.5 bits (132), Expect = 2e-07
Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 11/166 (6%)
Frame = +1
Query: 436 LQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQ 615
LQ+N L +D + CE Q P G+ K+I S P V T +
Sbjct: 2958 LQMNNLGTEDSGDFICEA--QNPAGSTSCSTKVIVKEPPVFSSFPPVVET--------LK 3007
Query: 616 GMRISLQCQAQGSPPISYAWY--KKQTKNEAPIKIGAL---GTLLFKPAVVTDSGSYFCT 780
+SL+C+ G+PP WY K+Q ++ KI + ++ +D G Y C
Sbjct: 3008 NTEVSLECELSGTPPFEVIWYKDKRQLRSSKKYKIASKNFHASIHILNVETSDIGEYHCK 3067
Query: 781 AKGRVGSEQHSDTVK------FVVKDSSNPLEAKTKTPPTMQSPLE 900
A+ VGS+ TVK FV K N L P +Q+ +E
Sbjct: 3068 AQNEVGSDTCICTVKLKEPPRFVSK--LNSLTVVAGEPAELQAYIE 3111
Score = 50.4 bits (119), Expect = 5e-06
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Frame = +1
Query: 463 DQSHYTCEVTWQTPDGNQVVRD--KIIELHVQKLSVSKPTVTTGSGYGFTVPQGMRISLQ 636
D Y+CE+ N+ +D K + L+V S+ P T G +SLQ
Sbjct: 3560 DAGQYSCEIE------NEAGKDVCKALLLNVILSSLEPPYFVTELE-PLEASVGDSVSLQ 3612
Query: 637 CQAQGSPPISYAWYKKQTKNEAPIK-----IGALGTLLFKPAVVTDSGSYFCTAKGRVGS 801
CQ G+P I+ +WYK TK + + TL+F + DSG Y C A+ +G+
Sbjct: 3613 CQVAGTPEITVSWYKGDTKLRPTPEYRTYFTNNVATLVFNKVNINDSGEYTCKAENSIGT 3672
Score = 50.1 bits (118), Expect = 6e-06
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 12/192 (6%)
Frame = +1
Query: 325 GSDPVTVFLRDSSGDHIQQAKYRGRLHVNHEVPGDVSLQLNTL-------EMDDQSHYTC 483
GS P+TV A Y+ + ++ +++ + NTL M D YTC
Sbjct: 5811 GSQPITV------------AWYKNNIEIHPTSNCEITFKNNTLLLHVKKAGMGDAGLYTC 5858
Query: 484 EVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPI 663
+V+ G+ + I+ +K V +T TV +G + L C QGS PI
Sbjct: 5859 KVS--NDAGSALCTSSIVIKEPKKAPVFDQHLTP-----VTVSEGEFVQLSCHVQGSEPI 5911
Query: 664 SYAWYKKQTKNEAPIKIG---ALGT--LLFKPAVVTDSGSYFCTAKGRVGSEQHSDTVKF 828
W K + + + A GT L K DSG Y C A GS+ V
Sbjct: 5912 RIQWLKAGREIKPSDRCSFSFANGTAVLELKDVAKADSGDYVCKASNAAGSDTSKSKVTI 5971
Query: 829 VVKDSSNPLEAK 864
K ++ P K
Sbjct: 5972 KDKPAAVPAAKK 5983
>ref|XP_538134.2| PREDICTED: similar to V-set and immunoglobulin domain containing 1
[Canis familiaris].
Length = 385
Score = 53.5 bits (127), Expect = 6e-07
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 8/203 (3%)
Frame = +1
Query: 217 VPKSVTGPWKG-DVNIPCTY-GPLQGYTQVLVKWLVQHGSD-PVTVFLRDSSGDHIQQAK 387
+P S+ G DV + CTY + ++ ++W H D P T G + +
Sbjct: 28 IPNSIVNVTIGSDVTLVCTYTSTVASRDKLSIQWSFFHKKDLPPTSIYYSEGGQAVAIGQ 87
Query: 388 YRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVS 567
++ R+ V P + S+ ++ ++ D Y C+V P I++++V +
Sbjct: 88 FKDRI-VGSSSPDNASITISHMQPADSGVYICDVN--NPPDFVGKNQGILKVNV----LV 140
Query: 568 KPTVTTGSGYGFTVPQ-GMRISLQCQAQ-GSPPISYAWYKKQTKNEAPIKIG---ALGTL 732
KP+ S G VP+ G ISL C + G+P Y WYK + + P+K A GTL
Sbjct: 141 KPSKPFCSIQG--VPETGHPISLSCLSLLGTPSPVYYWYKLEGGDIIPVKENFNPATGTL 198
Query: 733 LFKPAVVTDSGSYFCTAKGRVGS 801
+ + G Y CTA +G+
Sbjct: 199 VIGNLTSFEQGYYQCTAINNLGN 221
>ref|XP_548841.2| PREDICTED: similar to adlican [Canis familiaris].
Length = 2827
Score = 52.8 bits (125), Expect = 1e-06
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 5/192 (2%)
Frame = +1
Query: 247 GDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQQAKYRGRLHVNHEVPG 426
GD+ + C G + W + GS V F++ G G + V
Sbjct: 2258 GDLKVDCV---ATGLPNPEISWSLPDGS-LVNSFMQSDDG---------GGRTKRYVVFN 2304
Query: 427 DVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFT 606
+ +L N + M ++ YTC NQV +D E+ V+ VS+P Y
Sbjct: 2305 NGTLYFNEVGMREEGDYTCFAE------NQVGKD---EMRVRVKVVSEPAAIRNKTYSVV 2355
Query: 607 -VPQGMRISLQCQAQGSPPISYAWYKKQTK----NEAPIKIGALGTLLFKPAVVTDSGSY 771
VP G +++ C+A+G P W + + +I GTLL + A +DSG+Y
Sbjct: 2356 QVPYGDVVTVACEAKGEPTPRVTWLSPTNRLIPASSEKYQIYQDGTLLIQKAQRSDSGNY 2415
Query: 772 FCTAKGRVGSEQ 807
C + G ++
Sbjct: 2416 TCVVRNSAGEDR 2427
>ref|XP_546389.2| PREDICTED: similar to junctional adhesion molecule 3 precursor
[Canis familiaris].
Length = 654
Score = 52.0 bits (123), Expect = 2e-06
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Frame = +1
Query: 385 KYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSV 564
+ +G L E+ G SL++ + D + Y CEV + + + + + +IEL VQ V
Sbjct: 427 RIQGDLAGRAELLGKTSLRIWNVTRTDSALYRCEVVAR--NDRKEIDEIVIELTVQVKPV 484
Query: 565 SKPTVTTGSGYGFTVPQGMRISLQCQ-AQGSPPISYAWYKKQT------------KNEAP 705
S P VP G +L CQ ++G P Y+WY+ +N +
Sbjct: 485 S-PVCRVPKA----VPVGKTATLHCQESEGYPRPHYSWYRNDVPLPTDSRANPRFRNSSF 539
Query: 706 IKIGALGTLLFKPAVVTDSGSYFCTAKGRVGS 801
+
Animal-Genome cDNA 20110601C-012251
Animal-Genome cDNA 20110601C-012251
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012251
(1656 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039994.1| V-set and immunoglobulin domain-containing p... 248 1e-65
Alignment gi|NP_776520.1| junctional adhesion molecule A precursor [Bos t... 57 5e-08
Alignment gi|XP_002685831.1| PREDICTED: heparan sulfate proteoglycan 2 [B... 54 5e-07
Alignment gi|XP_582024.3| PREDICTED: heparan sulfate proteoglycan 2 [Bos ... 54 5e-07
Alignment gi|NP_001091512.1| adipocyte adhesion molecule [Bos taurus]. 53 9e-07
Alignment gi|NP_001039395.1| V-set and immunoglobulin domain-containing p... 52 1e-06
Alignment gi|NP_001030407.1| cell surface A33 antigen [Bos taurus]. 52 2e-06
Alignment gi|NP_001179466.1| hemicentin-1 [Bos taurus]. 51 3e-06
Alignment gi|XP_002694295.1| PREDICTED: hemicentin 1 [Bos taurus]. 51 3e-06
Alignment gi|XP_002685306.1| PREDICTED: titin [Bos taurus]. 51 3e-06
>ref|NP_001039994.1| V-set and immunoglobulin domain-containing protein 4 [Bos taurus].
Length = 305
Score = 248 bits (632), Expect = 1e-65
Identities = 118/132 (89%), Positives = 123/132 (93%)
Frame = +1
Query: 187 VVTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSG 366
VV YGHPILEVP+SVTGPWKGDVNIPCTYGPLQGYTQVLVKWLV+ GSD VT+FLRD SG
Sbjct: 15 VVIYGHPILEVPESVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVERGSDSVTIFLRDPSG 74
Query: 367 DHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELH 546
DHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDD+SHYTCEVTWQTPDGNQVVRDKI+EL
Sbjct: 75 DHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDRSHYTCEVTWQTPDGNQVVRDKIVELR 134
Query: 547 VQKLSVSKPTVT 582
VQK S SKP T
Sbjct: 135 VQKHS-SKPLET 145
Score = 241 bits (614), Expect = 2e-63
Identities = 121/171 (70%), Positives = 133/171 (77%)
Frame = +1
Query: 829 VVKDSSNPLEAKTKTPPTMQSPLEAXXXXXXXXXXXXEMDGYIEKTSTGPGKGLPIFAII 1008
V K SS PLE KTK+ PTMQ+PLEA EMDG I KTS GPGKGL IFAII
Sbjct: 135 VQKHSSKPLETKTKSLPTMQTPLEATYTVNISWGRITEMDGDIGKTSAGPGKGLSIFAII 194
Query: 1009 LIISLCCIMVITLTYIMLCRKTSQQEHVYEVARVHAREASDSGESMRVAIFASGCSSEDP 1188
LIISLCCI+ IT+TYIM+CRKT+QQ+HVYEVAR HAREASDSGE+MRVA+F SGCS E+P
Sbjct: 195 LIISLCCIVFITMTYIMVCRKTTQQDHVYEVARFHAREASDSGETMRVALFTSGCSDEEP 254
Query: 1189 PSQTLGNDYSDEPCLGQEYQIIAQVNGDYTRLLHTVPRNYEHPTTKGKGVC 1341
SQTLGNDYSDEPCLGQEYQII Q+N DY LLHT +YE TK K VC
Sbjct: 255 ASQTLGNDYSDEPCLGQEYQIITQINSDYAHLLHTDSLDYELLATKVKNVC 305
>ref|NP_776520.1| junctional adhesion molecule A precursor [Bos taurus].
Length = 298
Score = 57.0 bits (136), Expect = 5e-08
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 13/225 (5%)
Frame = +1
Query: 187 VVTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSG 366
V TY P++ VP++ + C+Y G++ V+W HG V +
Sbjct: 30 VQTY-EPVVRVPEN------NPAKLSCSYS---GFSSPRVEWKFTHGDIRGLVCYNNKI- 78
Query: 367 DHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELH 546
A Y R+ + D + +++ D YTC V+ +G + ++L
Sbjct: 79 ----TASYENRVTFS-----DTGITFHSVTRKDTGMYTCMVS---DEGGNTYGEVTVQLI 126
Query: 547 VQKLSVSKPTVTTGSGYGFTVPQGMRISLQC-QAQGSPPISYAWYK------------KQ 687
V + SKPT+ S +V G R L C + GSPP Y W+K +
Sbjct: 127 VL-VPPSKPTINVPS----SVTIGTRAVLTCSERDGSPPSEYKWFKDGVEMPLEPKSNRA 181
Query: 688 TKNEAPIKIGALGTLLFKPAVVTDSGSYFCTAKGRVGSEQHSDTV 822
N + G L+F P +D+G + C A+ S SDTV
Sbjct: 182 FSNSSYTLNQKTGELIFDPVSASDTGDFTCQAQNGYASPVKSDTV 226
>ref|XP_002685831.1| PREDICTED: heparan sulfate proteoglycan 2 [Bos taurus].
Length = 4389
Score = 53.5 bits (127), Expect = 5e-07
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Frame = +1
Query: 373 IQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQ 552
I +K R L H + GD +L + + D Y C + +P G+ + + LHV+
Sbjct: 3241 IHWSKLRSPLPWQHRLEGD-TLIIPRVAQQDSGQYICNAS--SPAGHA---EATVVLHVE 3294
Query: 553 KLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALG-- 726
S P TT + +V G + LQC A G+PP+++ W ++ + GA
Sbjct: 3295 ----SPPYATTVPEHA-SVRAGEAVQLQCLAHGTPPLTFQW----SRVGGHLPAGATARN 3345
Query: 727 -TLLFKPAVVTDSGSYFCTAKGRVG 798
LLF+ A DSG Y C RVG
Sbjct: 3346 ELLLFEAAAPEDSGRYRCQVTNRVG 3370
>ref|XP_582024.3| PREDICTED: heparan sulfate proteoglycan 2 [Bos taurus].
Length = 4391
Score = 53.5 bits (127), Expect = 5e-07
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Frame = +1
Query: 373 IQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQ 552
I +K R L H + GD +L + + D Y C + +P G+ + + LHV+
Sbjct: 3243 IHWSKLRSPLPWQHRLEGD-TLIIPRVAQQDSGQYICNAS--SPAGHA---EATVVLHVE 3296
Query: 553 KLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALG-- 726
S P TT + +V G + LQC A G+PP+++ W ++ + GA
Sbjct: 3297 ----SPPYATTVPEHA-SVRAGEAVQLQCLAHGTPPLTFQW----SRVGGHLPAGATARN 3347
Query: 727 -TLLFKPAVVTDSGSYFCTAKGRVG 798
LLF+ A DSG Y C RVG
Sbjct: 3348 ELLLFEAAAPEDSGRYRCQVTNRVG 3372
>ref|NP_001091512.1| adipocyte adhesion molecule [Bos taurus].
Length = 373
Score = 52.8 bits (125), Expect = 9e-07
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 12/179 (6%)
Frame = +1
Query: 304 VKWLV--QHGSDPVTVFLRDSSGDHIQQAKYRGRL-HVNHEVPGDVSLQLNTLEMDDQSH 474
++WL+ + G+ V + + + +GR+ ++ + GD SLQ+ L+ D+
Sbjct: 49 IEWLLTDREGNQKVVITYSSHHVYNNLTEEQKGRVAFASNFLAGDASLQIEPLKPSDEGR 108
Query: 475 YTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQ-AQG 651
YTC+V G V I+++ V+ SKP + +G ++LQC+ + G
Sbjct: 109 YTCKV---KNSGRYVWSYVILKVLVRP---SKPKCELEG----ELTEGSDLTLQCESSSG 158
Query: 652 SPPISYAWYKKQTKN--------EAPIKIGALGTLLFKPAVVTDSGSYFCTAKGRVGSE 804
+ PI Y+W + Q K ++ I G +L + ++ SG Y CTA G E
Sbjct: 159 TEPIVYSWQRVQEKEGEDERLPPKSKIDYNHPGRVLLQNLTMSSSGLYQCTAGNEAGKE 217
>ref|NP_001039395.1| V-set and immunoglobulin domain-containing protein 1 precursor [Bos
taurus].
Length = 382
Score = 52.4 bits (124), Expect = 1e-06
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 10/194 (5%)
Frame = +1
Query: 250 DVNIPCTYGP-LQGYTQVLVKWLVQH--GSDPVTVFLRDSSGDHIQQAKYRGRLHVNHEV 420
DV + CTY + ++ ++W H S PV+++ + G K++ R+ V
Sbjct: 38 DVTLICTYATTVASLNKLSIQWTFFHKEASQPVSIYYSEG-GQATAIGKFKDRI-VGSNT 95
Query: 421 PGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVS---KPTVTTGS 591
G+ S+ ++ ++ +D Y C+V T + +SVS KP+ S
Sbjct: 96 SGNASITISHMQPEDSGIYICDVNNPTD---------FFGKNQGTISVSVLVKPSKPFCS 146
Query: 592 GYGFTVPQGMRISLQC-QAQGSPPISYAWYKKQTKNEAPIKIG---ALGTLLFKPAVVTD 759
G G ISL C G+P Y WYK + +N P+K A G L +
Sbjct: 147 IQGIA-ETGHPISLTCLSVLGTPSPVYYWYKLEGRNIVPVKENFNPATGILFIGNLTTFE 205
Query: 760 SGSYFCTAKGRVGS 801
G Y CTA +G+
Sbjct: 206 QGYYQCTAINILGN 219
>ref|NP_001030407.1| cell surface A33 antigen [Bos taurus].
Length = 319
Score = 52.0 bits (123), Expect = 2e-06
Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 6/217 (2%)
Frame = +1
Query: 190 VTYGHPILEVPKSVTGPWKG-DVNIPCTYGPLQGYTQVLVKW--LVQHGSDPVTVFLRDS 360
VT +E PK V +G +V +PC+Y + ++W L++ ++ V ++ +
Sbjct: 17 VTVHGIFVETPKDVLRAARGKNVTLPCSYQTSSPNREGFIQWDKLLRSHTERVLIWAFLT 76
Query: 361 SGDHIQQAKYRGRLHV-NHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKII 537
+++ Y+ R + N+ D S+ ++ L MDD Y C V T D V + +
Sbjct: 77 K-EYVYGELYQNRARISNNAEQSDASITIDQLTMDDNGTYECSVL-LTSDLGGVSKSRAY 134
Query: 538 ELHVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQA-QGSPPISYAWYKKQTKNEAPIKI 714
L V P G G I L CQ+ +GSP Y+W ++
Sbjct: 135 ------LLVLVPPSKPDCGIQGETVIGNDIQLTCQSKEGSPAPQYSWKSYDVLHQERQVT 188
Query: 715 GALG-TLLFKPAVVTDSGSYFCTAKGRVGSEQHSDTV 822
G T K SG Y C ++ VG+E + TV
Sbjct: 189 PFTGQTFSLKNISTEMSGYYICISRNEVGTESCNITV 225
>ref|NP_001179466.1| hemicentin-1 [Bos taurus].
Length = 5635
Score = 51.2 bits (121), Expect = 3e-06
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Frame = +1
Query: 418 VPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTG-SG 594
+PG +LQ+ + DD Y C T + ++++ +++++ + + G S
Sbjct: 2625 LPGGRTLQILNAQEDDAGRYACVAT---NEAGEMIKHYEVKVYIPPIINKGDLLGPGLSP 2681
Query: 595 YGFTVPQGMRISLQCQAQGSPPISYAWYK--KQTKNEAPIKIGALG-TLLFKPAVVTDSG 765
+ ++L+C+A P S +WYK + K++ + I A G TL K A ++D+G
Sbjct: 2682 REVKIKVNNTLTLECEAYAIPSASLSWYKDGQPLKSDDHVTIAAGGHTLQIKEAQISDTG 2741
Query: 766 SYFCTAKGRVGSEQHSDTVKFVVKDSSNPL 855
Y C A G ++ V V S L
Sbjct: 2742 RYTCVASNVAGEDELDFDVNIQVPPSFQKL 2771
Score = 49.7 bits (117), Expect = 8e-06
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Frame = +1
Query: 427 DVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFT 606
++SL+L +++ D Y C V+ + + V L+V +P T +
Sbjct: 573 NLSLELRSVKFSDAGEYRCVVSNEGGSSTEAVF----------LTVQEPPKVTVMPKNQS 622
Query: 607 VPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPI------KIGALGTLLFKPAVVTDSGS 768
G +S+ C A G P AW T N+ I ++ + G L K AV D+G
Sbjct: 623 FTAGSEVSIMCSATGYPKPKIAW----TMNDVFIMGSHRYRMTSEGNLFIKNAVPKDAGI 678
Query: 769 YFCTAKGRVGSEQHSDTVKFV 831
Y C A G ++ + T++++
Sbjct: 679 YGCLASNSAGMDKQTSTLRYI 699
>ref|XP_002694295.1| PREDICTED: hemicentin 1 [Bos taurus].
Length = 5635
Score = 51.2 bits (121), Expect = 3e-06
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Frame = +1
Query: 418 VPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTG-SG 594
+PG +LQ+ + DD Y C T + ++++ +++++ + + G S
Sbjct: 2625 LPGGRTLQILNAQEDDAGRYACVAT---NEAGEMIKHYEVKVYIPPIINKGDLLGPGLSP 2681
Query: 595 YGFTVPQGMRISLQCQAQGSPPISYAWYK--KQTKNEAPIKIGALG-TLLFKPAVVTDSG 765
+ ++L+C+A P S +WYK + K++ + I A G TL K A ++D+G
Sbjct: 2682 REVKIKVNNTLTLECEAYAIPSASLSWYKDGQPLKSDDHVTIAAGGHTLQIKEAQISDTG 2741
Query: 766 SYFCTAKGRVGSEQHSDTVKFVVKDSSNPL 855
Y C A G ++ V V S L
Sbjct: 2742 RYTCVASNVAGEDELDFDVNIQVPPSFQKL 2771
Score = 49.7 bits (117), Expect = 8e-06
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Frame = +1
Query: 427 DVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFT 606
++SL+L +++ D Y C V+ + + V L+V +P T +
Sbjct: 573 NLSLELRSVKFSDAGEYRCVVSNEGGSSTEAVF----------LTVQEPPKVTVMPKNQS 622
Query: 607 VPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPI------KIGALGTLLFKPAVVTDSGS 768
G +S+ C A G P AW T N+ I ++ + G L K AV D+G
Sbjct: 623 FTAGSEVSIMCSATGYPKPKIAW----TMNDVFIMGSHRYRMTSEGNLFIKNAVPKDAGI 678
Query: 769 YFCTAKGRVGSEQHSDTVKFV 831
Y C A G ++ + T++++
Sbjct: 679 YGCLASNSAGMDKQTSTLRYI 699
>ref|XP_002685306.1| PREDICTED: titin [Bos taurus].
Length = 33452
Score = 51.2 bits (121), Expect = 3e-06
Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 11/166 (6%)
Frame = +1
Query: 436 LQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQ 615
LQ+N L +D + CE Q P G+ K+I S P V T +
Sbjct: 5464 LQMNYLGTEDTGDFICEA--QNPAGSTSCSTKVIVKEPPVFSSFPPVVET--------LK 5513
Query: 616 GMRISLQCQAQGSPPISYAWY--KKQTKNEAPIKIGAL---GTLLFKPAVVTDSGSYFCT 780
+S++C+ G+PP WY K+Q ++ KI + ++ D G Y C
Sbjct: 5514 NAEVSIECELSGTPPFEVVWYKDKRQLRSSKKYKIASKNFHASIHILNVDTLDIGEYHCK 5573
Query: 781 AKGRVGSE------QHSDTVKFVVKDSSNPLEAKTKTPPTMQSPLE 900
A+ VGS+ + + +FV K N L P +Q+ +E
Sbjct: 5574 AQNEVGSDTCICIVKLKEPPRFVSK--LNSLTVVAGEPAELQASIE 5617
Score = 50.4 bits (119), Expect = 5e-06
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Frame = +1
Query: 463 DQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQ 642
D Y+CE+ N+ RD L +S +P G +SLQCQ
Sbjct: 6035 DAGRYSCEIE------NEAGRDVCEAL----VSTLEPPYFVTELEPLEASVGDSVSLQCQ 6084
Query: 643 AQGSPPISYAWYKKQTKNEAPIK-----IGALGTLLFKPAVVTDSGSYFCTAKGRVGS 801
GSP I+ +WYK TK + + TL+F + DSG Y C A+ +G+
Sbjct: 6085 VAGSPEITVSWYKGDTKLRPTPEYRTYFTNNVATLVFNKVNINDSGEYTCKAENSIGT 6142
Score = 49.7 bits (117), Expect = 8e-06
Identities = 74/315 (23%), Positives = 123/315 (39%), Gaps = 10/315 (3%)
Frame = +1
Query: 208 ILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQQAK 387
+ E P VT P D+ L G + V +K Q GS P T+ R GD ++
Sbjct: 4185 VQEPPSFVTKPASKDI--------LPG-SAVFLKSTFQ-GSTPFTI--RWFKGD--KELV 4230
Query: 388 YRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTP----DGNQVVRDKIIELHVQK 555
G ++N E + SL+L +++ D YTC+V+ N V++ V++
Sbjct: 4231 SGGNCYINKEAL-ESSLELYSVKTTDSGTYTCKVSNVAGAVECSANLFVKEPAT--FVER 4287
Query: 556 LSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYK-----KQTKNEAPIKIGA 720
L +S+ + +G L C+ G+PPI W+ K++ + +
Sbjct: 4288 LELSQ-----------LLKKGDTTQLACKVTGTPPIKITWFANDREIKESSKHKMSFVES 4336
Query: 721 LGTLLFKPAVVTDSGSYFCTAKGRVGSEQHSDTVKFVVKDSSNPLEAKTKTPPTMQSPLE 900
L V DSG Y C A+ GS+ S + +VK+S P K P + +
Sbjct: 4337 TAVLRLTDIAVEDSGEYMCEAQNEAGSDHCSSIL--IVKES--PYFTKEFKPIEVLKEYD 4392
Query: 901 AXXXXXXXXXXXXEMDGYIEKTSTGPGKGLPIFAIILIISLCCIMVITLTY-IMLCRKTS 1077
E+ + + T+ G+ F ++SL + + CR T+
Sbjct: 4393 VMLLAEVAGTPPFEITWFKDNTTLRSGRKYKTFIQDRLVSLQILKFVAADVGKYQCRVTN 4452
Query: 1078 QQEHVYEVARVHARE 1122
+ ARV RE
Sbjct: 4453 EVGSSTCSARVTLRE 4467
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,495,077
Number of extensions: 1835993
Number of successful extensions: 5892
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 5576
Number of HSP's successfully gapped: 22
Length of query: 552
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 445
Effective length of database: 14,140,958
Effective search space: 6292726310
Effective search space used: 6292726310
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
GTL+F DSG Y+C A GS
Sbjct: 540 LLNSETGTLVFSAVHKEDSGQYYCIASNDAGS 571
>ref|XP_547438.2| PREDICTED: similar to High Incidence of Males (increased X chromosome
loss) family member (him-4) [Canis familiaris].
Length = 5637
Score = 50.4 bits (119), Expect = 5e-06
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Frame = +1
Query: 418 VPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTG-SG 594
+PG +LQ+ + D+ Y+C T + ++++ +++++ + + G S
Sbjct: 2627 LPGGRTLQILNAQEDNAGRYSCIAT---NEAGEMIKHYEVKVYIPPIINKGDLLGPGLSP 2683
Query: 595 YGFTVPQGMRISLQCQAQGSPPISYAWYK--KQTKNEAPIKIGALG-TLLFKPAVVTDSG 765
+ ++L+C+A P S +WYK + K++ + I A G TL K A ++D+G
Sbjct: 2684 KEVKIKVNNTLTLECEAYAIPSASLSWYKDGQPLKSDDHVNIAASGHTLQIKEAQISDTG 2743
Query: 766 SYFCTAKGRVGSEQHSDTVKFVVKDSSNPL 855
Y C A G ++ V V S L
Sbjct: 2744 RYTCVASNIAGEDELDFDVNIQVPPSFQKL 2773
>ref|XP_544829.2| PREDICTED: similar to neural cell adhesion molecule 2 precursor
[Canis familiaris].
Length = 881
Score = 50.1 bits (118), Expect = 6e-06
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Frame = +1
Query: 433 SLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVP 612
+LQ+ + D+ Y CE + G RD I+ ++V +++ P T + T
Sbjct: 214 NLQILNINKSDEGIYRCEGRVEAR-GEIDFRDIIVIVNVPP-AITMPQKT----FNATAE 267
Query: 613 QGMRISLQCQAQGSPPISYAWYKKQ---TKNEAPIKIGALGTLLFKPAVVTDSGSYFCTA 783
+G ++L C+A GSP S +WY+ +NE + G+ L + + +D+G Y C A
Sbjct: 268 RGEEMTLSCRASGSPEPSISWYRNGKFIEENEKYVLKGSHTELTVRNIINSDAGPYVCRA 327
Query: 784 KGRVGSEQHSDTVKFVVKDSSNPLEAKT 867
+ G ++ ++ V+ L+ +T
Sbjct: 328 TNKAGEDEKQAFLQVFVQPHIIQLKNET 355
>ref|XP_532128.2| PREDICTED: similar to MAM domain containing
glycosylphosphatidylinositol anchor 1 [Canis
familiaris].
Length = 1291
Score = 50.1 bits (118), Expect = 6e-06
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Frame = +1
Query: 436 LQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQ 615
L+L L D + YTC+V+ + G + DK I + + + P + V
Sbjct: 536 LKLKNLRPQDYASYTCQVSVRNVCG---IPDKAITFRLTN-TTAPPALKLSVNETLVVNP 591
Query: 616 GMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGAL---GTLLFKPAVVTDSGSYFCTAK 786
G +++QC G P+ + + P+ +GAL GTL DSG Y CTA
Sbjct: 592 GENVTVQCLLTGGDPLPQLQW---SHGPGPLPLGALAQSGTLSIPSVQARDSGYYNCTAT 648
Query: 787 GRVGSEQHSDTVKFVVKDSSN 849
VG+ TV +V+ N
Sbjct: 649 NNVGNPA-KKTVNLLVRSMKN 668
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 69,225,743
Number of extensions: 1888019
Number of successful extensions: 5944
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5679
Number of HSP's successfully gapped: 14
Length of query: 552
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 444
Effective length of database: 15,274,216
Effective search space: 6781751904
Effective search space used: 6781751904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012251
(1656 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360390.1| PREDICTED: v-set and immunoglobulin domain-c... 448 e-126
Alignment gi|XP_003135191.2| PREDICTED: v-set and immunoglobulin domain-c... 316 2e-86
Alignment gi|XP_003127732.2| PREDICTED: basement membrane-specific hepara... 62 9e-10
Alignment gi|XP_003361121.1| PREDICTED: titin-like, partial [Sus scrofa]. 57 4e-08
Alignment gi|XP_003359624.1| PREDICTED: titin-like [Sus scrofa]. 57 4e-08
Alignment gi|NP_001121916.1| junctional adhesion molecule A [Sus scrofa]. 54 2e-07
Alignment gi|XP_001924589.3| PREDICTED: coxsackievirus and adenovirus rec... 54 2e-07
Alignment gi|XP_003130135.2| PREDICTED: junctional adhesion molecule C-li... 51 2e-06
Alignment gi|XP_003360572.1| PREDICTED: matrix-remodeling-associated prot... 50 3e-06
Alignment gi|XP_003130435.2| PREDICTED: hemicentin-1-like [Sus scrofa]. 50 4e-06
>ref|XP_003360390.1| PREDICTED: v-set and immunoglobulin domain-containing protein
4-like [Sus scrofa].
Length = 264
Score = 448 bits (1152), Expect = e-126
Identities = 214/220 (97%), Positives = 218/220 (99%)
Frame = +1
Query: 199 GHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQ 378
GHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQ
Sbjct: 41 GHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQ 100
Query: 379 QAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKL 558
QAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKL
Sbjct: 101 QAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKL 160
Query: 559 SVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALGTLLF 738
SVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALGTLLF
Sbjct: 161 SVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALGTLLF 220
Query: 739 KPAVVTDSGSYFCTAKGRVGSEQHSDTVKFVVKDSSNPLE 858
KPAVVTDSGSYFCTAKGRVGSEQHSDTVKFVVKD++ ++
Sbjct: 221 KPAVVTDSGSYFCTAKGRVGSEQHSDTVKFVVKDTAQNVD 260
>ref|XP_003135191.2| PREDICTED: v-set and immunoglobulin domain-containing protein 4
isoform 2 [Sus scrofa].
Length = 170
Score = 316 bits (810), Expect = 2e-86
Identities = 156/168 (92%), Positives = 156/168 (92%)
Frame = +1
Query: 838 DSSNPLEAKTKTPPTMQSPLEAXXXXXXXXXXXXEMDGYIEKTSTGPGKGLPIFAIILII 1017
DSSNPLEAKTKTPPTMQSPLEA EMDGYIEKTSTGPGKGLPIFAIILII
Sbjct: 3 DSSNPLEAKTKTPPTMQSPLEATSTVNSSWVWTTEMDGYIEKTSTGPGKGLPIFAIILII 62
Query: 1018 SLCCIMVITLTYIMLCRKTSQQEHVYEVARVHAREASDSGESMRVAIFASGCSSEDPPSQ 1197
SLCCIMVITLTYIMLCRKTSQQEHVYEVARVHAREASDSGESMRVAIFASGCSSEDPPSQ
Sbjct: 63 SLCCIMVITLTYIMLCRKTSQQEHVYEVARVHAREASDSGESMRVAIFASGCSSEDPPSQ 122
Query: 1198 TLGNDYSDEPCLGQEYQIIAQVNGDYTRLLHTVPRNYEHPTTKGKGVC 1341
TLGNDYSDEPCLGQEYQIIAQVNGDYTRLLHTVPRNYEHPTTKGKGVC
Sbjct: 123 TLGNDYSDEPCLGQEYQIIAQVNGDYTRLLHTVPRNYEHPTTKGKGVC 170
>ref|XP_003127732.2| PREDICTED: basement membrane-specific heparan sulfate proteoglycan
core protein [Sus scrofa].
Length = 3308
Score = 62.0 bits (149), Expect = 9e-10
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Frame = +1
Query: 373 IQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQ 552
I +K R L H++ GD +L + + D Y C T +P G+ + I LHV+
Sbjct: 2821 IHWSKLRSPLPWQHQLEGD-TLIIPRVAQQDSGQYICNAT--SPAGHA---EATIALHVE 2874
Query: 553 KLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGA-LGT 729
S P TT + +V G + LQC A G+PP+++ W + P ++ A
Sbjct: 2875 ----SPPYATTVPEHA-SVRAGETVHLQCLAHGTPPLTFQW--SRVGGNLPSRVTARKEM 2927
Query: 730 LLFKPAVVTDSGSYFCTAKGRVGSEQ 807
LLF+PA DSG Y C +VGS +
Sbjct: 2928 LLFEPAAPEDSGRYRCRVTNKVGSAE 2953
>ref|XP_003361121.1| PREDICTED: titin-like, partial [Sus scrofa].
Length = 7185
Score = 56.6 bits (135), Expect = 4e-08
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 11/166 (6%)
Frame = +1
Query: 436 LQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQ 615
LQ+N+L +D + CE Q P G+ K+I S P V T +
Sbjct: 2926 LQMNSLGTEDSGDFICEA--QNPAGSTSCSTKVIVKEPPVFSSFPPVVET--------LK 2975
Query: 616 GMRISLQCQAQGSPPISYAWY--KKQTKNEAPIKIGAL---GTLLFKPAVVTDSGSYFCT 780
+SL+C+ G+PP WY K+Q ++ KI + ++ +D G Y C
Sbjct: 2976 NAEVSLECELSGTPPFEVVWYKDKRQLRSSKKYKIASKNFHASIHILNVDTSDIGEYHCK 3035
Query: 781 AKGRVGSEQHSDTVK------FVVKDSSNPLEAKTKTPPTMQSPLE 900
A+ VGS+ TVK FV K N L P +Q+ +E
Sbjct: 3036 AQNEVGSDTCICTVKLKEPPRFVSK--LNSLTVVAGEPAELQASIE 3079
Score = 49.3 bits (116), Expect = 6e-06
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Frame = +1
Query: 463 DQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQ 642
D Y+CE+ N+ RD I E V L +P G +SLQCQ
Sbjct: 3497 DAGQYSCEIE------NEAGRD-ICEALVSTL---EPPYFVTELEPLEASVGDSVSLQCQ 3546
Query: 643 AQGSPPISYAWYKKQTKNEAPIK-----IGALGTLLFKPAVVTDSGSYFCTAKGRVGS 801
G+P I+ +WYK TK + + TL+F + DSG Y C A+ +G+
Sbjct: 3547 VAGTPEITVSWYKGDTKLRPTPEYRTYFTNNVATLVFNKVNINDSGEYTCKAENSIGT 3604
>ref|XP_003359624.1| PREDICTED: titin-like [Sus scrofa].
Length = 5926
Score = 56.6 bits (135), Expect = 4e-08
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 11/166 (6%)
Frame = +1
Query: 436 LQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQ 615
LQ+N+L +D + CE Q P G+ K+I S P V T +
Sbjct: 2938 LQMNSLGTEDSGDFICEA--QNPAGSTSCSTKVIVKEPPVFSSFPPVVET--------LK 2987
Query: 616 GMRISLQCQAQGSPPISYAWY--KKQTKNEAPIKIGAL---GTLLFKPAVVTDSGSYFCT 780
+SL+C+ G+PP WY K+Q ++ KI + ++ +D G Y C
Sbjct: 2988 NAEVSLECELSGTPPFEVVWYKDKRQLRSSKKYKIASKNFHASIHILNVDTSDIGEYHCK 3047
Query: 781 AKGRVGSEQHSDTVK------FVVKDSSNPLEAKTKTPPTMQSPLE 900
A+ VGS+ TVK FV K N L P +Q+ +E
Sbjct: 3048 AQNEVGSDTCICTVKLKEPPRFVSK--LNSLTVVAGEPAELQASIE 3091
Score = 49.3 bits (116), Expect = 6e-06
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Frame = +1
Query: 463 DQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQ 642
D Y+CE+ N+ RD I E V L +P G +SLQCQ
Sbjct: 3509 DAGQYSCEIE------NEAGRD-ICEALVSTL---EPPYFVTELEPLEASVGDSVSLQCQ 3558
Query: 643 AQGSPPISYAWYKKQTKNEAPIK-----IGALGTLLFKPAVVTDSGSYFCTAKGRVGS 801
G+P I+ +WYK TK + + TL+F + DSG Y C A+ +G+
Sbjct: 3559 VAGTPEITVSWYKGDTKLRPTPEYRTYFTNNVATLVFNKVNINDSGEYTCKAENSIGT 3616
>ref|NP_001121916.1| junctional adhesion molecule A [Sus scrofa].
Length = 298
Score = 54.3 bits (129), Expect = 2e-07
Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 13/201 (6%)
Frame = +1
Query: 259 IPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQQAKYRGRLHVNHEVPGDVSL 438
+ C+Y G++ V+W HG V + A Y R+ + +
Sbjct: 47 LSCSYS---GFSSPRVEWKFTHGDITSLVCYNNKI-----TASYENRVTFSAS-----GI 93
Query: 439 QLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQG 618
+++ D YTC V+ +G + + L V + SKPT++ S + G
Sbjct: 94 TFHSVTRKDTGTYTCMVS---DEGGNTYGEVTVNLIVL-VPPSKPTISVPS----SATIG 145
Query: 619 MRISLQC-QAQGSPPISYAWYK-------KQTKNEAPIKIG-----ALGTLLFKPAVVTD 759
R L C + GSPP Y W+K + N A I G L+F P +D
Sbjct: 146 NRAVLTCSEKDGSPPSEYFWFKDGVLMPTEPKSNRAFINSSYSLNPKTGELIFDPVSASD 205
Query: 760 SGSYFCTAKGRVGSEQHSDTV 822
+G Y C A+ GS SDTV
Sbjct: 206 AGDYTCEAQNGYGSPMRSDTV 226
>ref|XP_001924589.3| PREDICTED: coxsackievirus and adenovirus receptor homolog isoform 1
[Sus scrofa].
Length = 365
Score = 54.3 bits (129), Expect = 2e-07
Identities = 60/212 (28%), Positives = 92/212 (43%), Gaps = 13/212 (6%)
Frame = +1
Query: 211 LEVPKSVTGPWKGDVN-IPC--TYGPLQGYTQVLVKWLVQHGSDP-VTVFLRDSSGDHIQ 378
+ P+ + KG+ +PC T GP + + ++WL+ + V + SGD I
Sbjct: 22 ITTPEQMIEKAKGETAYLPCRFTLGP-EDQGPLDIEWLLSPADNQKVDQVIILYSGDKIY 80
Query: 379 QAKY---RGRLHV--NHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIEL 543
Y +GR+H N GD S+ + L++ D Y C+V GN+
Sbjct: 81 DDYYQDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVGNK--------- 131
Query: 544 HVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQ-AQGSPPISYAWYKKQTKNEAPIKIGA 720
+Q + KP+ T G + G L+C+ +GS P+ Y W K + P A
Sbjct: 132 KIQLTVLLKPSGTRCYVDG-SEEIGNDFKLKCEPKEGSLPLLYEWQKLSNSQKLPTLWLA 190
Query: 721 LGT---LLFKPAVVTDSGSYFCTAKGRVGSEQ 807
T + K A SG+Y CT K RVGS+Q
Sbjct: 191 EMTSPVISVKNASTEYSGTYSCTVKNRVGSDQ 222
>ref|XP_003130135.2| PREDICTED: junctional adhesion molecule C-like [Sus scrofa].
Length = 301
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Frame = +1
Query: 385 KYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSV 564
K +G L E+ G SL++ + D + Y CEV + + + + + +IEL VQ
Sbjct: 74 KIQGDLTGRAELLGKTSLKIWNVTRTDSALYRCEVVAR--NDRKEIDEIVIELTVQV--- 128
Query: 565 SKPTVTTGSGYGFTVPQGMRISLQCQ-AQGSPPISYAWYKKQT------------KNEAP 705
KP V VP G +L CQ +G P Y+WY+ +N +
Sbjct: 129 -KP-VPPACRVPRAVPVGKAATLSCQEGEGYPRPHYSWYRNDVPLPTDSRANPRFRNSSF 186
Query: 706 IKIGALGTLLFKPAVVTDSGSYFCTAKGRVGS 801
+ GTL+F DSG Y+C A GS
Sbjct: 187 LLNPETGTLVFNAVHKEDSGQYYCIASNDAGS 218
>ref|XP_003360572.1| PREDICTED: matrix-remodeling-associated protein 5 [Sus scrofa].
Length = 2773
Score = 50.4 bits (119), Expect = 3e-06
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 4/191 (2%)
Frame = +1
Query: 247 GDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQQAKYRGRLHVNHEVPG 426
GD+ + C G + W + GS V F++ G G + V
Sbjct: 2204 GDLKVDCV---ATGLPNPEISWSLPDGS-LVNSFMQSDDG---------GGRAKRYVVFN 2250
Query: 427 DVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFT 606
+ +L N + M ++ YTC NQV +D++ +HV K+ P + +
Sbjct: 2251 NGTLYFNEVGMREEGDYTCVAE------NQVGKDEMT-VHV-KVVTEPPAIRNKTYSVVQ 2302
Query: 607 VPQGMRISLQCQAQGSPPISYAWYKKQTK----NEAPIKIGALGTLLFKPAVVTDSGSYF 774
VP G +++ C+A+G P W + + +I GTLL + A +DSG+Y
Sbjct: 2303 VPYGDVVTVACEAKGEPTPRVTWLSPTNRLIPASSEKYQIYPDGTLLIQKAQRSDSGNYT 2362
Query: 775 CTAKGRVGSEQ 807
C + G ++
Sbjct: 2363 CVVRNSAGEDR 2373
>ref|XP_003130435.2| PREDICTED: hemicentin-1-like [Sus scrofa].
Length = 780
Score = 50.1 bits (118), Expect = 4e-06
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Frame = +1
Query: 418 VPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTG-SG 594
+PG +LQ+ + D+ Y+C T + ++++ +++++ + + G S
Sbjct: 508 LPGGRTLQILNAQEDNAGRYSCVAT---NEAGEMIKHYEVKVYIPPIINKGDLLGPGLSP 564
Query: 595 YGFTVPQGMRISLQCQAQGSPPISYAWYK--KQTKNEAPIKIGALG-TLLFKPAVVTDSG 765
+ ++L+C+A P S +WYK + K++ + I A G TL K A ++D+G
Sbjct: 565 KEVKIKVNNTLTLECEAYAVPSASLSWYKDGQPLKSDDHVTIAANGHTLQIKEAQISDTG 624
Query: 766 SYFCTAKGRVGSEQHSDTVKFVVKDSSNPL 855
Y C A G ++ V V S L
Sbjct: 625 RYTCVASNIAGEDELDFDVNIQVPPSFQKL 654
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,804,112
Number of extensions: 1181263
Number of successful extensions: 3762
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3587
Number of HSP's successfully gapped: 14
Length of query: 552
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,754,644
Effective search space: 3922080512
Effective search space used: 3922080512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012251
(1656 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808457.1| V-set and immunoglobulin domain-containing prot... 216 6e-56
Alignment gi|NP_766235.1| junctional adhesion molecule A precursor [Mus m... 57 6e-08
Alignment gi|NP_035782.3| titin isoform N2-A [Mus musculus]. 55 2e-07
Alignment gi|NP_067623.1| cell surface A33 antigen precursor [Mus musculu... 54 3e-07
Alignment gi|NP_001019891.2| hemicentin 1 [Mus musculus]. 54 5e-07
Alignment gi|NP_032331.2| basement membrane-specific heparan sulfate prot... 51 3e-06
Alignment gi|NP_075766.1| junctional adhesion molecule C precursor [Mus m... 51 3e-06
Alignment gi|XP_003084534.1| PREDICTED: hemicentin-2 [Mus musculus]. 50 5e-06
Alignment gi|XP_003086264.1| PREDICTED: hemicentin-2 [Mus musculus]. 50 5e-06
Alignment gi|NP_001074629.1| MAM domain-containing glycosylphosphatidylin... 50 7e-06
>ref|NP_808457.1| V-set and immunoglobulin domain-containing protein 4 [Mus
musculus].
Length = 280
Score = 216 bits (549), Expect = 6e-56
Identities = 97/123 (78%), Positives = 112/123 (91%)
Frame = +1
Query: 187 VVTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSG 366
V+TYGHP L+ P+SVTG WKGDV I C Y PL+GY QVLVKWLV+HGSD VT+FLRDS+G
Sbjct: 15 VLTYGHPTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTG 74
Query: 367 DHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELH 546
DHIQQAKYRGRL V+H+VPGDVSLQ+NTL+MDD++HYTCEVTWQTPDGNQV+RDKIIEL
Sbjct: 75 DHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELR 134
Query: 547 VQK 555
V+K
Sbjct: 135 VRK 137
Score = 119 bits (299), Expect = 5e-27
Identities = 64/135 (47%), Positives = 84/135 (62%)
Frame = +1
Query: 847 NPLEAKTKTPPTMQSPLEAXXXXXXXXXXXXEMDGYIEKTSTGPGKGLPIFAIILIISLC 1026
NP T+ P T+ S LEA G +E+T G G+ LPIFAII IISLC
Sbjct: 139 NPPRINTEAPTTLHSSLEATTIMSSTSDLTTNGTGKLEETIAGSGRNLPIFAIIFIISLC 198
Query: 1027 CIMVITLTYIMLCRKTSQQEHVYEVARVHAREASDSGESMRVAIFASGCSSEDPPSQTLG 1206
CI+ +T+ YI+ +T QQE+VY V+RV AR+ S+S E+ RV A +++P SQ L
Sbjct: 199 CIVAVTIPYILFRCRTFQQEYVYGVSRVFARKTSNSEETTRVTTIA----TDEPDSQALI 254
Query: 1207 NDYSDEPCLGQEYQI 1251
+DYSD+PCL QEYQI
Sbjct: 255 SDYSDDPCLSQEYQI 269
>ref|NP_766235.1| junctional adhesion molecule A precursor [Mus musculus].
Length = 300
Score = 56.6 bits (135), Expect = 6e-08
Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 14/207 (6%)
Frame = +1
Query: 238 PWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQQAKYRGRLHVNHE 417
P + + CTY G++ V+W GS V A Y R+ +
Sbjct: 40 PENESIKLTCTYS---GFSSPRVEWKFVQGSTTALVCYNSQI-----TAPYADRVTFSSS 91
Query: 418 VPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGY 597
+ +++ D YTC V+ +G Q + I L V + SKPT++ S
Sbjct: 92 -----GITFSSVTRKDNGEYTCMVS---EEGGQNYGEVSIHLTVL-VPPSKPTISVPS-- 140
Query: 598 GFTVPQGMRISLQC-QAQGSPPISYAWYK----------KQTK---NEAPIKIGALGTLL 735
+V G R L C + GSPP Y+W+K K+T+ N + G L+
Sbjct: 141 --SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 198
Query: 736 FKPAVVTDSGSYFCTAKGRVGSEQHSD 816
F P DSG Y+C A+ G+ S+
Sbjct: 199 FDPVTAFDSGEYYCQAQNGYGTAMRSE 225
>ref|NP_035782.3| titin isoform N2-A [Mus musculus].
Length = 33467
Score = 54.7 bits (130), Expect = 2e-07
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 11/166 (6%)
Frame = +1
Query: 436 LQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQ 615
+Q+N+L +D + CE Q P G+ K+I S P V T +
Sbjct: 5475 IQMNSLGTEDSGDFICEA--QNPAGSTSCSTKVIVKEPPVFSSFPPIVET--------LK 5524
Query: 616 GMRISLQCQAQGSPPISYAWY--KKQTKNEAPIKIGAL---GTLLFKPAVVTDSGSYFCT 780
+SL+C+ G+PP WY K+Q ++ K+ + ++ TD G Y C
Sbjct: 5525 NTEVSLECELSGTPPFEVVWYKDKRQLRSSKKYKVASKNFHASIHILNVESTDIGEYHCK 5584
Query: 781 AKGRVGSE------QHSDTVKFVVKDSSNPLEAKTKTPPTMQSPLE 900
A+ VGS+ + + KF+ K N L P +Q+ +E
Sbjct: 5585 AQNEVGSDACVCAVKLKEPPKFISK--LNSLTVVAGEPAELQASIE 5628
Score = 52.8 bits (125), Expect = 8e-07
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Frame = +1
Query: 436 LQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQ 615
L++ + D HY+CE+ N+ RD L +S +P
Sbjct: 6037 LEILSSTKGDAGHYSCEIE------NEAGRDACDAL----VSTLEPPYFVTELEPLEASV 6086
Query: 616 GMRISLQCQAQGSPPISYAWYKKQTKNEAPIK-----IGALGTLLFKPAVVTDSGSYFCT 780
G +SLQCQ G+P I+ +W+K TK + + + TL+F + DSG Y C
Sbjct: 6087 GDSVSLQCQVAGTPEITVSWFKGDTKLRSTPEYRTYFTNNVATLVFNKVSINDSGEYTCM 6146
Query: 781 AKGRVGS 801
A+ +G+
Sbjct: 6147 AENSIGT 6153
>ref|NP_067623.1| cell surface A33 antigen precursor [Mus musculus].
Length = 319
Score = 54.3 bits (129), Expect = 3e-07
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 7/197 (3%)
Frame = +1
Query: 253 VNIPCTYGPLQGYTQVLVKW--LVQHGSDPVTVFLRDSSGDHIQQAKYRGRLHVNHEVP- 423
V +PCTY + ++W L++ ++ V + + +I +Y R+ V+++
Sbjct: 39 VTLPCTYNTYVSDREGFIQWDKLLRSQTERVVTW-NFVTKKYIYGNRYENRVRVSNDAEL 97
Query: 424 GDVSLQLNTLEMDDQSHYTCEVTWQT-PDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYG 600
+ S+ ++ L MDD Y C V+ + D N R +++ L + SKP +
Sbjct: 98 SNASITIDQLTMDDNGTYECSVSLMSDQDVNAKSRVRLLVL----VPPSKPDCSIQG--- 150
Query: 601 FTVPQGMRISLQC-QAQGSPPISYAWYKKQTKN-EAPIKIGALG-TLLFKPAVVTDSGSY 771
+ G I L C A+GSP Y+W +N + P+ G LL K +G Y
Sbjct: 151 -EMVIGNNIQLTCHSAEGSPSPQYSWKSYNAQNQQRPLTQPVSGEPLLLKNISTETAGYY 209
Query: 772 FCTAKGRVGSEQHSDTV 822
CT+ VG E + TV
Sbjct: 210 ICTSSNDVGIESCNITV 226
>ref|NP_001019891.2| hemicentin 1 [Mus musculus].
Length = 5634
Score = 53.5 bits (127), Expect = 5e-07
Identities = 43/154 (27%), Positives = 60/154 (38%), Gaps = 6/154 (3%)
Frame = +1
Query: 433 SLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVP 612
S+++ + D Y C T + Q V KLSV P V
Sbjct: 1134 SMKITETRVSDSGMYLCVATNIAGNVTQSV----------KLSVHVPPKIQHGNRHIKVQ 1183
Query: 613 QGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGAL------GTLLFKPAVVTDSGSYF 774
G R+ + C A GSPP W+ K+ P GA GTL + AV++D+G Y
Sbjct: 1184 VGQRVDILCNAHGSPPPVITWF----KSGRPFLDGAQHPGSPDGTLSIEQAVISDAGVYT 1239
Query: 775 CTAKGRVGSEQHSDTVKFVVKDSSNPLEAKTKTP 876
C A GS++ T+ S L+ TP
Sbjct: 1240 CAATNIAGSDEAEVTLHVQEPPSVEDLQPPFNTP 1273
Score = 51.6 bits (122), Expect = 2e-06
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Frame = +1
Query: 427 DVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTT-GSGYGF 603
++SL+L ++++ D Y C V+ +G + L VQ+ KP VT F
Sbjct: 573 NLSLELRSVKIGDAGEYRCVVS---SEGGSAAAS--VFLTVQE----KPKVTVMPKNQSF 623
Query: 604 TVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPI------KIGALGTLLFKPAVVTDSG 765
T G IS+ C A G P W T NE I ++ + GTL K AV D+G
Sbjct: 624 T--GGSEISIMCSATGYPKPKIVW----TMNEMFIMGSHRYRMTSEGTLFIKNAVPKDAG 677
Query: 766 SYFCTAKGRVGSEQHSDTVKFV 831
+Y C A G+++ + T++++
Sbjct: 678 TYACLASNAAGTDKQTSTLRYI 699
Score = 49.3 bits (116), Expect = 9e-06
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
Frame = +1
Query: 418 VPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGY 597
+PG +LQ+ + D+ Y+C T + + + K E+ V + K G G
Sbjct: 2624 LPGGRTLQILNAQEDNAGRYSCVATNEAGE-----KIKHYEVKVYIPPIIKKGDLLGPGL 2678
Query: 598 G---FTVPQGMRISLQCQAQGSPPISYAWYK--KQTKNEAPIKIGALG-TLLFKPAVVTD 759
+ ++L+C+A P S WYK + K++ + I A G TL K A ++D
Sbjct: 2679 SPKEVKIRVNSSLTLECEAYAIPSASLRWYKDGQPLKSDDHVTIAASGHTLQIKEAQISD 2738
Query: 760 SGSYFCTAKGRVGSEQHSDTVKFVVKDSSNPL 855
+G Y C A G ++ V V S L
Sbjct: 2739 TGRYTCVASNLAGEDELDFDVNIQVPPSFQKL 2770
Score = 49.3 bits (116), Expect = 9e-06
Identities = 48/198 (24%), Positives = 69/198 (34%), Gaps = 5/198 (2%)
Frame = +1
Query: 433 SLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVP 612
SLQ++ D Y C Q P G + + KL+V P V + + V
Sbjct: 4041 SLQISRAVRGDAGTYMCVA--QNPAGTALGK--------VKLNVQVPPVISSHQKEYVVT 4090
Query: 613 QGMRISLQCQAQGSPPISYAWYK-----KQTKNEAPIKIGALGTLLFKPAVVTDSGSYFC 777
+SL C+ +GSPP W+K ++ + + GAL +P D+G Y C
Sbjct: 4091 MDKPVSLLCETEGSPPPDITWHKDGHALTESIRQRILNSGALQIAFAQP---DDAGQYTC 4147
Query: 778 TAKGRVGSEQHSDTVKFVVKDSSNPLEAKTKTPPTMQSPLEAXXXXXXXXXXXXEMDGYI 957
A GS S T+ V E Q+ L E DG +
Sbjct: 4148 MAANMAGSSSVSSTLTVHVPPRIQSTEVHFTVNENSQAVLPCVADGIPTPAIHWEKDGVL 4207
Query: 958 EKTSTGPGKGLPIFAIIL 1011
G P +IL
Sbjct: 4208 IANLLGKYTAQPYGELIL 4225
>ref|NP_032331.2| basement membrane-specific heparan sulfate proteoglycan core protein
[Mus musculus].
Length = 4383
Score = 50.8 bits (120), Expect = 3e-06
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 1/146 (0%)
Frame = +1
Query: 373 IQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQ 552
I +K R L H + G+ +L + + D Y C T + + + LHV+
Sbjct: 3239 IHWSKLRAPLPWQHRIEGN-TLVIPRVAQQDSGQYICNAT-----NSAGHTEATVVLHVE 3292
Query: 553 KLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALGTL 732
S P T + P G + LQC A G+PP++Y W P K A +
Sbjct: 3293 ----SPPYATIIPEHTSAQP-GNLVQLQCLAHGTPPLTYQW--SLVGGVLPEKAVARNQV 3345
Query: 733 L-FKPAVVTDSGSYFCTAKGRVGSEQ 807
L +P V DSG Y C RVGS +
Sbjct: 3346 LRLEPTVPEDSGRYRCQVSNRVGSAE 3371
>ref|NP_075766.1| junctional adhesion molecule C precursor [Mus musculus].
Length = 310
Score = 50.8 bits (120), Expect = 3e-06
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Frame = +1
Query: 385 KYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSV 564
K +G L +V G SL++ + D + Y CEV R ++ E+ ++ +
Sbjct: 83 KIQGDLAGRTDVFGKTSLRIWNVTRSDSAIYRCEVVALND------RKEVDEITIELIVQ 136
Query: 565 SKPTVTTGSGYGFTVPQGMRISLQCQ-AQGSPPISYAWYKKQTKNEAPIKIGA------- 720
KP VT VP G +LQCQ ++G P Y+WY+ N+ P+ +
Sbjct: 137 VKP-VTPVCRIPAAVPVGKTATLQCQESEGYPRPHYSWYR----NDVPLPTDSRANPRFQ 191
Query: 721 ---------LGTLLFKPAVVTDSGSYFCTAKGRVGS 801
GTL+F DSG Y+C A G+
Sbjct: 192 NSSFHVNSETGTLVFNAVHKDDSGQYYCIASNDAGA 227
>ref|XP_003084534.1| PREDICTED: hemicentin-2 [Mus musculus].
Length = 5042
Score = 50.1 bits (118), Expect = 5e-06
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Frame = +1
Query: 418 VPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGY 597
+PG LQ+ + +D YTC VT + + + HV+ L P+++
Sbjct: 2562 LPGTHGLQILNAQKEDAGQYTCVVTNELGEATK-------NYHVEVLI--PPSISKDDPL 2612
Query: 598 GFTVPQGMR------ISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALG---TLLFKPAV 750
G + ++ ++L+C+ +PP S +WYK ++ LG L +P
Sbjct: 2613 GEVSVKEVKTKVNSSLTLECECWATPPPSISWYKDGRPVTPSHRLSVLGEGRLLQIQPTQ 2672
Query: 751 VTDSGSYFCTAKGRVGSEQHSDTV 822
V+DSG Y C A G + V
Sbjct: 2673 VSDSGRYLCVATNVAGEDDQDFNV 2696
>ref|XP_003086264.1| PREDICTED: hemicentin-2 [Mus musculus].
Length = 4154
Score = 50.1 bits (118), Expect = 5e-06
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Frame = +1
Query: 418 VPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGY 597
+PG LQ+ + +D YTC VT + + + HV+ L P+++
Sbjct: 1435 LPGTHGLQILNAQKEDAGQYTCVVTNELGEATK-------NYHVEVLI--PPSISKDDPL 1485
Query: 598 GFTVPQGMR------ISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALG---TLLFKPAV 750
G + ++ ++L+C+ +PP S +WYK ++ LG L +P
Sbjct: 1486 GEVSVKEVKTKVNSSLTLECECWATPPPSISWYKDGRPVTPSHRLSVLGEGRLLQIQPTQ 1545
Query: 751 VTDSGSYFCTAKGRVGSEQHSDTV 822
V+DSG Y C A G + V
Sbjct: 1546 VSDSGRYLCVATNVAGEDDQDFNV 1569
>ref|NP_001074629.1| MAM domain-containing glycosylphosphatidylinositol anchor protein 1
[Mus musculus].
Length = 948
Score = 49.7 bits (117), Expect = 7e-06
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Frame = +1
Query: 436 LQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQ 615
L+L L D + YTC+V+ + G + DK I + + + P + V
Sbjct: 199 LKLKNLRPQDYASYTCQVSVRNVCG---IPDKAITFQLTN-TTAPPALKLSVNETLVVNP 254
Query: 616 GMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGAL---GTLLFKPAVVTDSGSYFCTAK 786
G +++QC G P+ + + P+ +GAL GTL DSG Y CTA
Sbjct: 255 GENVTVQCLLTGGDPLPQLHW---SHGPGPLPLGALAQGGTLSIPSVQARDSGYYNCTAT 311
Query: 787 GRVGSEQHSDTVKFVVKDSSN 849
VG+ TV +V+ N
Sbjct: 312 NNVGNPA-KKTVNLLVRSLKN 331
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,079,509
Number of extensions: 1580312
Number of successful extensions: 5170
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4896
Number of HSP's successfully gapped: 16
Length of query: 552
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 446
Effective length of database: 12,433,743
Effective search space: 5545449378
Effective search space used: 5545449378
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012251
(1656 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009199.1| V-set and immunoglobulin domain-containing prot... 633 0.0
Alignment gi|NP_001171759.1| V-set and immunoglobulin domain-containing p... 511 e-144
Alignment gi|NP_001093901.1| V-set and immunoglobulin domain-containing p... 236 5e-62
Alignment gi|NP_001171760.1| V-set and immunoglobulin domain-containing p... 236 5e-62
Alignment gi|NP_005805.1| cell surface A33 antigen precursor [Homo sapien... 60 8e-09
Alignment gi|NP_058642.1| junctional adhesion molecule A precursor [Homo ... 57 5e-08
Alignment gi|NP_005520.4| basement membrane-specific heparan sulfate prot... 57 7e-08
Alignment gi|NP_596869.4| titin isoform N2-A [Homo sapiens]. 56 1e-07
Alignment gi|NP_056234.2| matrix-remodeling-associated protein 5 precurso... 52 1e-06
Alignment gi|NP_116190.3| junctional adhesion molecule C isoform 1 precur... 52 2e-06
>ref|NP_009199.1| V-set and immunoglobulin domain-containing protein 4 isoform 1
precursor [Homo sapiens].
Length = 399
Score = 633 bits (1632), Expect = 0.0
Identities = 302/385 (78%), Positives = 336/385 (87%)
Frame = +1
Query: 187 VVTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSG 366
V TYG PILEVP+SVTGPWKGDVN+PCTY PLQGYTQVLVKWLVQ GSDPVT+FLRDSSG
Sbjct: 15 VDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSG 74
Query: 367 DHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELH 546
DHIQQAKY+GRLHV+H+VPGDVSLQL+TLEMDD+SHYTCEVTWQTPDGNQVVRDKI EL
Sbjct: 75 DHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQVVRDKITELR 134
Query: 547 VQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALG 726
VQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQA+GSPPISY WYK+QT N+ PIK+ L
Sbjct: 135 VQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQQTNNQEPIKVATLS 194
Query: 727 TLLFKPAVVTDSGSYFCTAKGRVGSEQHSDTVKFVVKDSSNPLEAKTKTPPTMQSPLEAX 906
TLLFKPAV+ DSGSYFCTAKG+VGSEQHSD VKFVVKDSS L+ KT+ P TM PL+A
Sbjct: 195 TLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTKTEAPTTMTYPLKAT 254
Query: 907 XXXXXXXXXXXEMDGYIEKTSTGPGKGLPIFAIILIISLCCIMVITLTYIMLCRKTSQQE 1086
+MDGY+ +TS GPGK LP+FAIILIISLCC++V T+ YIMLCRKTSQQE
Sbjct: 255 STVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFTMAYIMLCRKTSQQE 314
Query: 1087 HVYEVARVHAREASDSGESMRVAIFASGCSSEDPPSQTLGNDYSDEPCLGQEYQIIAQVN 1266
HVYE AR HAREA+DSGE+MRVAIFASGCSS++P SQ LGN+YSDEPC+GQEYQIIAQ+N
Sbjct: 315 HVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDEPCIGQEYQIIAQIN 374
Query: 1267 GDYTRLLHTVPRNYEHPTTKGKGVC 1341
G+Y RLL TVP +YE T+GK VC
Sbjct: 375 GNYARLLDTVPLDYEFLATEGKSVC 399
>ref|NP_001171759.1| V-set and immunoglobulin domain-containing protein 4 isoform 4
precursor [Homo sapiens].
Length = 321
Score = 511 bits (1315), Expect = e-144
Identities = 244/307 (79%), Positives = 268/307 (87%)
Frame = +1
Query: 187 VVTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSG 366
V TYG PILEVP+SVTGPWKGDVN+PCTY PLQGYTQVLVKWLVQ GSDPVT+FLRDSSG
Sbjct: 15 VDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSG 74
Query: 367 DHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELH 546
DHIQQAKY+GRLHV+H+VPGDVSLQL+TLEMDD+SHYTCEVTWQTPDGNQVVRDKI EL
Sbjct: 75 DHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQVVRDKITELR 134
Query: 547 VQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALG 726
VQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQA+GSPPISY WYK+QT N+ PIK+ L
Sbjct: 135 VQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQQTNNQEPIKVATLS 194
Query: 727 TLLFKPAVVTDSGSYFCTAKGRVGSEQHSDTVKFVVKDSSNPLEAKTKTPPTMQSPLEAX 906
TLLFKPAV+ DSGSYFCTAKG+VGSEQHSD VKFVVKDSS L+ KT+ P TM PL+A
Sbjct: 195 TLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTKTEAPTTMTYPLKAT 254
Query: 907 XXXXXXXXXXXEMDGYIEKTSTGPGKGLPIFAIILIISLCCIMVITLTYIMLCRKTSQQE 1086
+MDGY+ +TS GPGK LP+FAIILIISLCC++V T+ YIMLCRKTSQQE
Sbjct: 255 STVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFTMAYIMLCRKTSQQE 314
Query: 1087 HVYEVAR 1107
HVYE AR
Sbjct: 315 HVYEAAR 321
>ref|NP_001093901.1| V-set and immunoglobulin domain-containing protein 4 isoform 2
precursor [Homo sapiens].
Length = 305
Score = 236 bits (602), Expect = 5e-62
Identities = 110/125 (88%), Positives = 118/125 (94%)
Frame = +1
Query: 187 VVTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSG 366
V TYG PILEVP+SVTGPWKGDVN+PCTY PLQGYTQVLVKWLVQ GSDPVT+FLRDSSG
Sbjct: 15 VDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSG 74
Query: 367 DHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELH 546
DHIQQAKY+GRLHV+H+VPGDVSLQL+TLEMDD+SHYTCEVTWQTPDGNQVVRDKI EL
Sbjct: 75 DHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQVVRDKITELR 134
Query: 547 VQKLS 561
VQK S
Sbjct: 135 VQKHS 139
Score = 235 bits (600), Expect = 8e-62
Identities = 114/171 (66%), Positives = 134/171 (78%)
Frame = +1
Query: 829 VVKDSSNPLEAKTKTPPTMQSPLEAXXXXXXXXXXXXEMDGYIEKTSTGPGKGLPIFAII 1008
V K SS L+ KT+ P TM PL+A +MDGY+ +TS GPGK LP+FAII
Sbjct: 135 VQKHSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAII 194
Query: 1009 LIISLCCIMVITLTYIMLCRKTSQQEHVYEVARVHAREASDSGESMRVAIFASGCSSEDP 1188
LIISLCC++V T+ YIMLCRKTSQQEHVYE AR HAREA+DSGE+MRVAIFASGCSS++P
Sbjct: 195 LIISLCCMVVFTMAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEP 254
Query: 1189 PSQTLGNDYSDEPCLGQEYQIIAQVNGDYTRLLHTVPRNYEHPTTKGKGVC 1341
SQ LGN+YSDEPC+GQEYQIIAQ+NG+Y RLL TVP +YE T+GK VC
Sbjct: 255 TSQNLGNNYSDEPCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC 305
>ref|NP_001171760.1| V-set and immunoglobulin domain-containing protein 4 isoform 3
precursor [Homo sapiens].
Length = 227
Score = 236 bits (602), Expect = 5e-62
Identities = 110/125 (88%), Positives = 118/125 (94%)
Frame = +1
Query: 187 VVTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSG 366
V TYG PILEVP+SVTGPWKGDVN+PCTY PLQGYTQVLVKWLVQ GSDPVT+FLRDSSG
Sbjct: 15 VDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLRDSSG 74
Query: 367 DHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELH 546
DHIQQAKY+GRLHV+H+VPGDVSLQL+TLEMDD+SHYTCEVTWQTPDGNQVVRDKI EL
Sbjct: 75 DHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQVVRDKITELR 134
Query: 547 VQKLS 561
VQK S
Sbjct: 135 VQKHS 139
Score = 113 bits (283), Expect = 5e-25
Identities = 56/93 (60%), Positives = 66/93 (70%)
Frame = +1
Query: 829 VVKDSSNPLEAKTKTPPTMQSPLEAXXXXXXXXXXXXEMDGYIEKTSTGPGKGLPIFAII 1008
V K SS L+ KT+ P TM PL+A +MDGY+ +TS GPGK LP+FAII
Sbjct: 135 VQKHSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAII 194
Query: 1009 LIISLCCIMVITLTYIMLCRKTSQQEHVYEVAR 1107
LIISLCC++V T+ YIMLCRKTSQQEHVYE AR
Sbjct: 195 LIISLCCMVVFTMAYIMLCRKTSQQEHVYEAAR 227
>ref|NP_005805.1| cell surface A33 antigen precursor [Homo sapiens].
Length = 319
Score = 59.7 bits (143), Expect = 8e-09
Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 9/213 (4%)
Frame = +1
Query: 211 LEVPKSVTGPWKG-DVNIPCTYGPLQGYTQVLVKW---LVQHGSDPVTVFLRDSSGDHIQ 378
+E P+ V +G V +PCTY + L++W L+ H V S+ ++I
Sbjct: 24 VETPQDVLRASQGKSVTLPCTYHTSTSSREGLIQWDKLLLTHTER--VVIWPFSNKNYIH 81
Query: 379 QAKYRGRLHV-NHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTP-DGNQVVRDKIIELHVQ 552
Y+ R+ + N+ D S+ ++ L M D Y C V+ + +GN R +++ L
Sbjct: 82 GELYKNRVSISNNAEQSDASITIDQLTMADNGTYECSVSLMSDLEGNTKSRVRLLVL--- 138
Query: 553 KLSVSKPTVTTGSGYGFTVPQGMRISLQCQA-QGSPPISYAWYKKQTKN-EAPIKIGALG 726
+ SKP G G I L CQ+ +GSP Y+W + N E P+ A G
Sbjct: 139 -VPPSKPE----CGIEGETIIGNNIQLTCQSKEGSPTPQYSWKRYNILNQEQPLAQPASG 193
Query: 727 TLLFKPAVVTD-SGSYFCTAKGRVGSEQHSDTV 822
+ + TD SG Y CT+ G++ + TV
Sbjct: 194 QPVSLKNISTDTSGYYICTSSNEEGTQFCNITV 226
>ref|NP_058642.1| junctional adhesion molecule A precursor [Homo sapiens].
Length = 299
Score = 57.0 bits (136), Expect = 5e-08
Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 18/214 (8%)
Frame = +1
Query: 238 PWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQQAKYRGRLHVNHE 417
P V + C Y G++ V+W + GD + Y ++ ++E
Sbjct: 41 PENNPVKLSCAYS---GFSSPRVEW-------------KFDQGDTTRLVCYNNKITASYE 84
Query: 418 -----VPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVT 582
+P ++ + T E D YTC V+ + + V+ K+I L + SKPTV
Sbjct: 85 DRVTFLPTGITFKSVTRE--DTGTYTCMVSEEGGNSYGEVKVKLIVL----VPPSKPTVN 138
Query: 583 TGSGYGFTVPQGMRISLQCQAQ-GSPPISYAWYK---------KQTK---NEAPIKIGAL 723
S + G R L C Q GSPP Y W+K K T+ N + +
Sbjct: 139 IPS----SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTT 194
Query: 724 GTLLFKPAVVTDSGSYFCTAKGRVGSEQHSDTVK 825
G L+F P +D+G Y C A+ G+ S+ V+
Sbjct: 195 GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 228
>ref|NP_005520.4| basement membrane-specific heparan sulfate proteoglycan core protein
precursor [Homo sapiens].
Length = 4391
Score = 56.6 bits (135), Expect = 7e-08
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Frame = +1
Query: 373 IQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQ 552
I +K R L H + GD +L + + D Y C T +P G+ + I LHV+
Sbjct: 3243 IHWSKLRSPLPWQHRLEGD-TLIIPRVAQQDSGQYICNAT--SPAGHA---EATIILHVE 3296
Query: 553 KLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALGTL 732
S P TT + +V G + LQC A G+PP+++ W + + P + A L
Sbjct: 3297 ----SPPYATTVPEHA-SVQAGETVQLQCLAHGTPPLTFQW--SRVGSSLPGRATARNEL 3349
Query: 733 L-FKPAVVTDSGSYFCTAKGRVGSEQ 807
L F+ A DSG Y C +VGS +
Sbjct: 3350 LHFERAAPEDSGRYRCRVTNKVGSAE 3375
>ref|NP_596869.4| titin isoform N2-A [Homo sapiens].
Length = 33423
Score = 55.8 bits (133), Expect = 1e-07
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 11/166 (6%)
Frame = +1
Query: 436 LQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQ 615
+Q+N L +D + CE Q P G+ K+I S P V T +
Sbjct: 5481 IQMNNLSTEDSGDFICEA--QNPAGSTSCSTKVIVKEPPVFSSFPPIVET--------LK 5530
Query: 616 GMRISLQCQAQGSPPISYAWY--KKQTKNEAPIKIGALG---TLLFKPAVVTDSGSYFCT 780
+SL+C+ G+PP WY K+Q ++ KI + ++ +D G Y C
Sbjct: 5531 NAEVSLECELSGTPPFEVVWYKDKRQLRSSKKYKIASKNFHTSIHILNVDTSDIGEYHCK 5590
Query: 781 AKGRVGSEQHSDTVK------FVVKDSSNPLEAKTKTPPTMQSPLE 900
A+ VGS+ TVK FV K N L P +Q+ +E
Sbjct: 5591 AQNEVGSDTCVCTVKLKEPPRFVSK--LNSLTVVAGEPAELQASIE 5634
>ref|NP_056234.2| matrix-remodeling-associated protein 5 precursor [Homo sapiens].
Length = 2828
Score = 52.4 bits (124), Expect = 1e-06
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 5/192 (2%)
Frame = +1
Query: 247 GDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQQAKYRGRLHVNHEVPG 426
GD+ + C G + W + GS + D SG ++ + V
Sbjct: 2259 GDLKVDCV---ATGLPNPEISWSLPDGSLVNSFMQSDDSGGRTKR----------YVVFN 2305
Query: 427 DVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGY-GF 603
+ +L N + M ++ YTC NQV +D E+ V+ V+ P Y
Sbjct: 2306 NGTLYFNEVGMREEGDYTCFAE------NQVGKD---EMRVRVKVVTAPATIRNKTYLAV 2356
Query: 604 TVPQGMRISLQCQAQGSPPISYAWYKKQTK----NEAPIKIGALGTLLFKPAVVTDSGSY 771
VP G +++ C+A+G P W K + +I GTLL + A +DSG+Y
Sbjct: 2357 QVPYGDVVTVACEAKGEPMPKVTWLSPTNKVIPTSSEKYQIYQDGTLLIQKAQRSDSGNY 2416
Query: 772 FCTAKGRVGSEQ 807
C + G ++
Sbjct: 2417 TCLVRNSAGEDR 2428
>ref|NP_116190.3| junctional adhesion molecule C isoform 1 precursor [Homo sapiens].
Length = 310
Score = 51.6 bits (122), Expect = 2e-06
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Frame = +1
Query: 385 KYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSV 564
K +G L E+ G SL++ + D + Y CEV + + + + + +IEL VQ
Sbjct: 83 KIQGDLAGRAEILGKTSLKIWNVTRRDSALYRCEVVAR--NDRKEIDEIVIELTVQV--- 137
Query: 565 SKPTVTTGSGYGFTVPQGMRISLQCQ-AQGSPPISYAWYKKQT------------KNEAP 705
KP VT VP G +L CQ ++G P Y+WY+ +N +
Sbjct: 138 -KP-VTPVCRVPKAVPVGKMATLHCQESEGHPRPHYSWYRNDVPLPTDSRANPRFRNSSF 195
Query: 706 IKIGALGTLLFKPAVVTDSGSYFCTAKGRVGS 801
GTL+F DSG Y+C A GS
Sbjct: 196 HLNSETGTLVFTAVHKDDSGQYYCIASNDAGS 227
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,240,092
Number of extensions: 1876425
Number of successful extensions: 6468
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6095
Number of HSP's successfully gapped: 19
Length of query: 552
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 444
Effective length of database: 14,737,052
Effective search space: 6543251088
Effective search space used: 6543251088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012251
(1656 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 975 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 975 bits (492), Expect = 0.0
Identities = 533/546 (97%), Gaps = 1/546 (0%)
Strand = Plus / Minus
Query: 1104 cagggtgcatgccagggaggccagtgactctggtgaatccatgagggtggccatcttcgc 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58756305 cagggtgcatgccagggaggccagtgactctggtgaatccatgagggtggccatcttcgc 58756246
Query: 1164 aagtggctgctccagtgaagatccaccttcccagactctgggcaacgactattctgatga 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58756245 aagtggctgctccagtgaagatccaccttcccagactctgggcaacgactattctgatga 58756186
Query: 1224 gccttgcctaggccaggagtaccagatcatcgcccaggtcaatggtgactacactcgctt 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58756185 gccttgcctaggccaggagtaccagatcatcgcccaggtcaatggtgactacactcgctt 58756126
Query: 1284 gctgcacacagttccccggaattatgagcatccgaccactaagggcaagggtgtctgcta 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58756125 gctgcacacagttccccggaattatgagcatccgaccactaagggcaagggtgtctgcta 58756066
Query: 1344 aaagtatcctattcggcaagggtctataaacatggttgcctactcagtcccagcactctg 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58756065 aaagtatcctattcggcaagggtctataaacatggttgcctactcagtcccagcactctg 58756006
Query: 1404 catgaccccttttcct-atattttttcttcctggattgtccaatgtatctttcctgccaa 1462
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58756005 catgaccccttttcctaatattttttcttcctggattgtccaatgtatctttcctgccaa 58755946
Query: 1463 ctctggagtcccttggggctagcagctgtcatatgcacctcaagcaagactgctactggt 1522
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 58755945 ctctggagtcccttggcctaagcagctgtcatatgcacctcaagcaagactgctactggt 58755886
Query: 1523 caggctctangcccttctagtatccctgcctgtggcttctgctgcttctctccagacacc 1582
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58755885 caggctctaggcccttctagtatccctgcctgtggcttctgctgcttctctccagacacc 58755826
Query: 1583 agaagggaattcacatantactagtactttgtcatcttgcctctaaacaacaatgaattt 1642
||| || | |||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 58755825 agagggaatttcacatataactagtactttgtcatcttgcctctagacaccaatgaattt 58755766
Query: 1643 tgactt 1648
||||||
Sbjct: 58755765 tgactt 58755760
Score = 710 bits (358), Expect = 0.0
Identities = 358/358 (100%)
Strand = Plus / Plus
Query: 199 ggccatccaatcctggaagtgcctaagagtgtgacaggaccttggaaaggggatgtaaat 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58774511 ggccatccaatcctggaagtgcctaagagtgtgacaggaccttggaaaggggatgtaaat 58774570
Query: 259 attccctgcacctatggtcctctgcaaggctatacacaagtcttggtaaagtggttggta 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58774571 attccctgcacctatggtcctctgcaaggctatacacaagtcttggtaaagtggttggta 58774630
Query: 319 caacatggctcagacccagtcaccgtctttctacgagactcctctggagaccatatccag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58774631 caacatggctcagacccagtcaccgtctttctacgagactcctctggagaccatatccag 58774690
Query: 379 caggcaaagtatcggggccgcctgcatgtaaaccatgaggttccaggagatgtttcactc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58774691 caggcaaagtatcggggccgcctgcatgtaaaccatgaggttccaggagatgtttcactc 58774750
Query: 439 caactgaataccttggaaatggatgaccagagccactatacttgtgaagtcacttggcag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58774751 caactgaataccttggaaatggatgaccagagccactatacttgtgaagtcacttggcag 58774810
Query: 499 acccctgatggcaaccaagtcgtgagagataagatcattgaactccatgtccagaaac 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58774811 acccctgatggcaaccaagtcgtgagagataagatcattgaactccatgtccagaaac 58774868
Score = 559 bits (282), Expect = e-156
Identities = 282/282 (100%)
Strand = Plus / Plus
Query: 557 tctctgtttccaagcccacggtgacaactggcagtggctacggattcacagtaccccagg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58775571 tctctgtttccaagcccacggtgacaactggcagtggctacggattcacagtaccccagg 58775630
Query: 617 gaatgaggattagtcttcaatgccaggctcagggttctcctcccatcagttatgcttggt 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58775631 gaatgaggattagtcttcaatgccaggctcagggttctcctcccatcagttatgcttggt 58775690
Query: 677 acaagaaacagactaaaaatgaagcacccatcaagataggagccttgggtacattgctct 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58775691 acaagaaacagactaaaaatgaagcacccatcaagataggagccttgggtacattgctct 58775750
Query: 737 tcaagccagcagtggtgaccgattcgggctcctatttctgtactgccaagggtcgggtag 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58775751 tcaagccagcagtggtgaccgattcgggctcctatttctgtactgccaagggtcgggtag 58775810
Query: 797 gctctgagcagcacagtgacactgtgaagtttgtcgtcaaag 838
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58775811 gctctgagcagcacagtgacactgtgaagtttgtcgtcaaag 58775852
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 1 aatgcgagatgggactgggagtctgagtaagagatatagggaagaaagggaagtgggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58777769 aatgcgagatgggactgggagtctgagtaagagatatagggaagaaagggaagtgggcag 58777710
Query: 61 gcacagacactggcagacatcaggagttcaagtgtttttggcatcaggaagctggaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58777709 gcacagacactggcagacatcaggagttcaagtgtttttggcatcaggaagctggaagaa 58777650
Query: 121 aggacagaaatcgctctgactgtgatgggactcttactgggcctgcggctcctgagccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58777649 aggacagaaatcgctctgactgtgatgggactcttactgggcctgcggctcctgagccac 58777590
Query: 181 ctactggtggtcacctatgg 200
||||||||||||||||||||
Sbjct: 58777589 ctactggtggtcacctatgg 58777570
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 978 aggaaaaggactgcctatctttgccatcattctcatcatttccttgtgctgtataatggt 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58758966 aggaaaaggactgcctatctttgccatcattctcatcatttccttgtgctgtataatggt 58758907
Query: 1038 catcaccctgacgtatattatgctctgtcggaagacatcccaacagg 1084
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58758906 catcaccctgacgtatattatgctctgtcggaagacatcccaacagg 58758860
Score = 161 bits (81), Expect = 2e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 900 agcaacatccacagtgaactcatcctgggtctggaccactgaaatggatggctacattga 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58762555 agcaacatccacagtgaactcatcctgggtctggaccactgaaatggatggctacattga 58762496
Query: 960 gaagaccagtactggtccagg 980
|||||||||||||||||||||
Sbjct: 58762495 gaagaccagtactggtccagg 58762475
Score = 129 bits (65), Expect = 5e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 837 agattcctcaaatccacttgaagccaagactaagacacctccaactatgcaatcaccctt 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58763173 agattcctcaaatccacttgaagccaagactaagacacctccaactatgcaatcaccctt 58763114
Query: 897 ggaag 901
|||||
Sbjct: 58763113 ggaag 58763109
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,617,335
Number of extensions: 319
Number of successful extensions: 319
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 7
Length of query: 1656
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1634
Effective length of database: 2,808,408,574
Effective search space: 4588939609916
Effective search space used: 4588939609916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)