Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012259
(2709 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534387.2| PREDICTED: similar to Eukaryotic translation in... 608 e-174
Alignment gi|XP_863416.1| PREDICTED: similar to Eukaryotic translation in... 604 e-172
Alignment gi|XP_863437.1| PREDICTED: similar to Eukaryotic translation in... 560 e-159
Alignment gi|XP_855413.1| PREDICTED: similar to Eukaryotic translation in... 505 e-143
Alignment gi|XP_863397.1| PREDICTED: similar to Eukaryotic translation in... 453 e-127
Alignment gi|XP_863372.1| PREDICTED: similar to eukaryotic translation in... 412 e-114
Alignment gi|XP_863348.1| PREDICTED: similar to Eukaryotic translation in... 162 2e-39
Alignment gi|XP_868618.1| PREDICTED: similar to eukaryotic translation in... 53 1e-06
Alignment gi|XP_854659.1| PREDICTED: similar to eukaryotic translation in... 53 1e-06
Alignment gi|XP_537560.2| PREDICTED: similar to eukaryotic translation in... 53 1e-06
>ref|XP_534387.2| PREDICTED: similar to Eukaryotic translation initiation factor 2
subunit 2 (Eukaryotic translation initiation factor 2
beta subunit) (eIF-2-beta) isoform 1 [Canis familiaris].
Length = 333
Score = 608 bits (1569), Expect = e-174
Identities = 305/333 (91%), Positives = 306/333 (91%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 60
Query: 348 SRKKDASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM 527
SRKKDASDDLDDLNFFNQ IFDIDEAEEGVKDLKIESD+QEPAEPEDDLDIM
Sbjct: 61 SRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDIQEPAEPEDDLDIM 120
Query: 528 LGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 707
LG FPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL
Sbjct: 121 LGNKKKKKKNVKFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 180
Query: 708 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 887
NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
Sbjct: 181 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 240
Query: 888 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 1067
LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
Sbjct: 241 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 300
Query: 1068 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 301 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 333
>ref|XP_863416.1| PREDICTED: similar to Eukaryotic translation initiation factor 2
subunit 2 (Eukaryotic translation initiation factor 2
beta subunit) (eIF-2-beta) isoform 6 [Canis familiaris].
Length = 334
Score = 604 bits (1557), Expect = e-172
Identities = 305/334 (91%), Positives = 306/334 (91%), Gaps = 1/334 (0%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 60
Query: 348 SRKK-DASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDI 524
SRKK DASDDLDDLNFFNQ IFDIDEAEEGVKDLKIESD+QEPAEPEDDLDI
Sbjct: 61 SRKKVDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDIQEPAEPEDDLDI 120
Query: 525 MLGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEEL 704
MLG FPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEEL
Sbjct: 121 MLGNKKKKKKNVKFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEEL 180
Query: 705 LNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAF 884
LNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAF
Sbjct: 181 LNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAF 240
Query: 885 LLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYF 1064
LLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYF
Sbjct: 241 LLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYF 300
Query: 1065 LQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
LQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 301 LQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 334
>ref|XP_863437.1| PREDICTED: similar to Eukaryotic translation initiation factor 2
subunit 2 (Eukaryotic translation initiation factor 2
beta subunit) (eIF-2-beta) isoform 7 [Canis familiaris].
Length = 314
Score = 560 bits (1443), Expect = e-159
Identities = 286/333 (85%), Positives = 287/333 (86%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 60
Query: 348 SRKKDASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM 527
SRKKDASDDLDDLNFFNQ IFDIDEAEEGVKDLKIESD+QEPAEPEDDLDIM
Sbjct: 61 SRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDIQEPAEPEDDLDIM 120
Query: 528 LGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 707
LG FPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL
Sbjct: 121 LGNKKKKKKNVKFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 180
Query: 708 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 887
NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKL
Sbjct: 181 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKL------------ 228
Query: 888 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 1067
GSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
Sbjct: 229 -------GSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 281
Query: 1068 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 282 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 314
>ref|XP_855413.1| PREDICTED: similar to Eukaryotic translation initiation factor 2
subunit 2 (Eukaryotic translation initiation factor 2
beta subunit) (eIF-2-beta) [Canis familiaris].
Length = 291
Score = 505 bits (1301), Expect = e-143
Identities = 256/291 (87%), Positives = 259/291 (89%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 60
Query: 348 SRKKDASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM 527
SRKKDASDDLDDLNFFNQ IFDIDEAEEGVK LKIESD+QEPAEPEDDLDIM
Sbjct: 61 SRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKYLKIESDIQEPAEPEDDLDIM 120
Query: 528 LGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 707
LG FPDEDEILEKDEALEDEDSKKDDGISFSNQT PAWAGSERDYTYEELL
Sbjct: 121 LGNKKKKKKNVKFPDEDEILEKDEALEDEDSKKDDGISFSNQTDPAWAGSERDYTYEELL 180
Query: 708 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 887
NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKK+SFVNFTDI KLLHRQPKH LAFL
Sbjct: 181 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKSSFVNFTDIFKLLHRQPKHHLAFL 240
Query: 888 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTIL 1040
LAELGTSGSIDGNNQLVIKGRFQQKQIENVL+RYIKEYVTC TCRSPDTIL
Sbjct: 241 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLKRYIKEYVTCRTCRSPDTIL 291
>ref|XP_863397.1| PREDICTED: similar to Eukaryotic translation initiation factor 2
subunit 2 (Eukaryotic translation initiation factor 2
beta subunit) (eIF-2-beta) isoform 5 [Canis familiaris].
Length = 242
Score = 453 bits (1165), Expect = e-127
Identities = 224/237 (94%), Positives = 226/237 (95%)
Frame = +3
Query: 456 GVKDLKIESDVQEPAEPEDDLDIMLGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDG 635
G +DLKIESD+QEPAEPEDDLDIMLG FPDEDEILEKDEALEDEDSKKDDG
Sbjct: 6 GKRDLKIESDIQEPAEPEDDLDIMLGNKKKKKKNVKFPDEDEILEKDEALEDEDSKKDDG 65
Query: 636 ISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKK 815
ISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKK
Sbjct: 66 ISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKK 125
Query: 816 TSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIK 995
TSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIK
Sbjct: 126 TSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIK 185
Query: 996 EYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
EYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 186 EYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 242
>ref|XP_863372.1| PREDICTED: similar to eukaryotic translation initiation factor 2,
subunit 2 beta, 38kDa isoform 4 [Canis familiaris].
Length = 214
Score = 412 bits (1058), Expect = e-114
Identities = 204/214 (95%), Positives = 204/214 (95%)
Frame = +3
Query: 525 MLGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEEL 704
MLG FPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEEL
Sbjct: 1 MLGNKKKKKKNVKFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEEL 60
Query: 705 LNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAF 884
LNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAF
Sbjct: 61 LNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAF 120
Query: 885 LLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYF 1064
LLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYF
Sbjct: 121 LLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYF 180
Query: 1065 LQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
LQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 181 LQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 214
>ref|XP_863348.1| PREDICTED: similar to Eukaryotic translation initiation factor 2
subunit 2 (Eukaryotic translation initiation factor 2
beta subunit) (eIF-2-beta) isoform 3 [Canis familiaris].
Length = 105
Score = 162 bits (410), Expect = 2e-39
Identities = 82/99 (82%), Positives = 82/99 (82%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 60
Query: 348 SRKKDASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVK 464
SRKKDASDDLDDLNFFNQ IFDIDEAEEGVK
Sbjct: 61 SRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVK 99
>ref|XP_868618.1| PREDICTED: similar to eukaryotic translation initiation factor 5
isoform 7 [Canis familiaris].
Length = 449
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 813 KTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSID-GNNQLVIKGRFQQKQIENVLRRY 989
KT VN D+ K L+R P + + ELG D N++ ++ G + +++++L +
Sbjct: 33 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92
Query: 990 IKEYVTCHTCRSPDTILQKDTRLYFL--QCETCHSR 1091
IK++V C C +P+T L + + + C+ C R
Sbjct: 93 IKKFVLCPECENPETELHVNPKKQTIGNSCKACGYR 128
>ref|XP_854659.1| PREDICTED: similar to eukaryotic translation initiation factor 5
isoform 2 [Canis familiaris].
Length = 425
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 813 KTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSID-GNNQLVIKGRFQQKQIENVLRRY 989
KT VN D+ K L+R P + + ELG D N++ ++ G + +++++L +
Sbjct: 33 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92
Query: 990 IKEYVTCHTCRSPDTILQKDTRLYFL--QCETCHSR 1091
IK++V C C +P+T L + + + C+ C R
Sbjct: 93 IKKFVLCPECENPETELHVNPKKQTIGNSCKACGYR 128
>ref|XP_537560.2| PREDICTED: similar to eukaryotic translation initiation factor 5
isoform 1 [Canis familiaris].
Length = 430
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 813 KTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSID-GNNQLVIKGRFQQKQIENVLRRY 989
KT VN D+ K L+R P + + ELG D N++ ++ G + +++++L +
Sbjct: 33 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92
Query: 990 IKEYVTCHTCRSPDTILQKDTRLYFL--QCETCHSR 1091
IK++V C C +P+T L + + + C+ C R
Sbjct: 93 IKKFVLCPECENPETELHVNPKKQTIGNSCKACGYR 128
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 91,035,687
Number of extensions: 2186432
Number of successful extensions: 10268
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 9727
Number of HSP's successfully gapped: 14
Length of query: 903
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 791
Effective length of database: 15,140,872
Effective search space: 11976429752
Effective search space used: 11976429752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012259
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012259
(2709 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015621.1| eukaryotic translation initiation factor 2 s... 605 e-173
Alignment gi|NP_001180152.1| eukaryotic translation initiation factor 5 [... 53 1e-06
Alignment gi|XP_002696892.1| PREDICTED: eukaryotic translation initiation... 53 1e-06
>ref|NP_001015621.1| eukaryotic translation initiation factor 2 subunit 2 [Bos taurus].
Length = 333
Score = 605 bits (1561), Expect = e-173
Identities = 302/333 (90%), Positives = 306/333 (91%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 60
Query: 348 SRKKDASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM 527
SRKKDASDDLDDLNFFNQ IFDIDEAEEG+KDLKIESDVQEPAEPE+DLDIM
Sbjct: 61 SRKKDASDDLDDLNFFNQKKKKKKSKKIFDIDEAEEGIKDLKIESDVQEPAEPEEDLDIM 120
Query: 528 LGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 707
LG FPDEDE+LEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL
Sbjct: 121 LGNKKKKKKVVKFPDEDEVLEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 180
Query: 708 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 887
NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
Sbjct: 181 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 240
Query: 888 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 1067
LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
Sbjct: 241 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 300
Query: 1068 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
QCETCHSRCSVASIKTGFQAVTG+RAQLRAKAN
Sbjct: 301 QCETCHSRCSVASIKTGFQAVTGRRAQLRAKAN 333
>ref|NP_001180152.1| eukaryotic translation initiation factor 5 [Bos taurus].
Length = 429
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 813 KTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSID-GNNQLVIKGRFQQKQIENVLRRY 989
KT VN D+ K L+R P + + ELG D N++ ++ G + +++++L +
Sbjct: 33 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92
Query: 990 IKEYVTCHTCRSPDTILQKDTRLYFL--QCETCHSR 1091
IK++V C C +P+T L + + + C+ C R
Sbjct: 93 IKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYR 128
>ref|XP_002696892.1| PREDICTED: eukaryotic translation initiation factor 5 [Bos taurus].
Length = 429
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 813 KTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSID-GNNQLVIKGRFQQKQIENVLRRY 989
KT VN D+ K L+R P + + ELG D N++ ++ G + +++++L +
Sbjct: 33 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92
Query: 990 IKEYVTCHTCRSPDTILQKDTRLYFL--QCETCHSR 1091
IK++V C C +P+T L + + + C+ C R
Sbjct: 93 IKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYR 128
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 87,930,568
Number of extensions: 2242272
Number of successful extensions: 9594
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9234
Number of HSP's successfully gapped: 3
Length of query: 903
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 792
Effective length of database: 14,008,606
Effective search space: 11094815952
Effective search space used: 11094815952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012259
(2709 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929185.1| PREDICTED: eukaryotic translation initiation... 609 e-174
Alignment gi|XP_003360000.1| PREDICTED: eukaryotic translation initiation... 215 9e-56
>ref|XP_001929185.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 2 [Sus
scrofa].
Length = 333
Score = 609 bits (1570), Expect = e-174
Identities = 306/333 (91%), Positives = 306/333 (91%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 60
Query: 348 SRKKDASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM 527
SRKKDASDDLDDLNFFNQ IFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM
Sbjct: 61 SRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM 120
Query: 528 LGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 707
LG FPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL
Sbjct: 121 LGNKKKKKKNVKFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 180
Query: 708 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 887
NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
Sbjct: 181 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 240
Query: 888 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 1067
LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
Sbjct: 241 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 300
Query: 1068 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 301 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 333
>ref|XP_003360000.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 2-like
[Sus scrofa].
Length = 210
Score = 215 bits (548), Expect = 9e-56
Identities = 105/105 (100%), Positives = 105/105 (100%)
Frame = +3
Query: 852 LHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPD 1031
LHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPD
Sbjct: 106 LHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPD 165
Query: 1032 TILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
TILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 166 TILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 210
Score = 122 bits (307), Expect = 8e-28
Identities = 59/59 (100%), Positives = 59/59 (100%)
Frame = +1
Query: 7 SNACEERAGCRSLSLMQDPSAVVREVSAGAALKPGSEADPSDFPSVLSPLEPQPCPGTR 183
SNACEERAGCRSLSLMQDPSAVVREVSAGAALKPGSEADPSDFPSVLSPLEPQPCPGTR
Sbjct: 47 SNACEERAGCRSLSLMQDPSAVVREVSAGAALKPGSEADPSDFPSVLSPLEPQPCPGTR 105
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 57,500,727
Number of extensions: 1602271
Number of successful extensions: 5862
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5631
Number of HSP's successfully gapped: 3
Length of query: 903
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 795
Effective length of database: 8,655,056
Effective search space: 6880769520
Effective search space used: 6880769520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012259
(2709 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080306.1| eukaryotic translation initiation factor 2 subu... 587 e-167
Alignment gi|XP_003084811.1| PREDICTED: eukaryotic translation initiation... 581 e-166
Alignment gi|XP_001474301.1| PREDICTED: eukaryotic translation initiation... 581 e-166
Alignment gi|XP_001479641.1| PREDICTED: eukaryotic translation initiation... 53 1e-06
Alignment gi|NP_775539.1| eukaryotic translation initiation factor 5 [Mus... 53 1e-06
Alignment gi|NP_829887.1| eukaryotic translation initiation factor 5 [Mus... 53 1e-06
>ref|NP_080306.1| eukaryotic translation initiation factor 2 subunit 2 [Mus musculus].
Length = 331
Score = 587 bits (1514), Expect = e-167
Identities = 296/333 (88%), Positives = 302/333 (90%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGDAQTEETQPSETKEVEPEPTE+KDV+ADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDAQTEETQPSETKEVEPEPTEEKDVDADEED 60
Query: 348 SRKKDASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM 527
SRKKDASDDLDDLNFFNQ IFDIDEAEE +KD+KIESD QEPAEPEDDLDIM
Sbjct: 61 SRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEAIKDVKIESDAQEPAEPEDDLDIM 120
Query: 528 LGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 707
LG FP+EDEILEKDEALEDEDSKKDDGISFS+QT AWAGSERDYTYEELL
Sbjct: 121 LGNKKKKKKNVKFPEEDEILEKDEALEDEDSKKDDGISFSSQT--AWAGSERDYTYEELL 178
Query: 708 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 887
NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
Sbjct: 179 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 238
Query: 888 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 1067
LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
Sbjct: 239 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 298
Query: 1068 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 299 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 331
>ref|XP_003084811.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 2-like
[Mus musculus].
Length = 331
Score = 581 bits (1498), Expect = e-166
Identities = 293/333 (87%), Positives = 300/333 (90%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGDAQTEETQPSETKEVEPEPTE+KDV+ADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDAQTEETQPSETKEVEPEPTEEKDVDADEED 60
Query: 348 SRKKDASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM 527
SRKKDASDDLDDLNFFNQ IFDIDEAEE +KD+KIESD QEPAEPED LDIM
Sbjct: 61 SRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEAIKDVKIESDAQEPAEPEDYLDIM 120
Query: 528 LGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 707
LG FP+EDEILEKDEALEDEDSKKDDGISFS+QT AWAGSERDYTYEELL
Sbjct: 121 LGNKKKKKKNVKFPEEDEILEKDEALEDEDSKKDDGISFSSQT--AWAGSERDYTYEELL 178
Query: 708 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 887
NRV NIMREKNPDMVAGEKRKFVMKPPQV+RVGTKKTSFVNFTDICKLLHRQPKHLLAFL
Sbjct: 179 NRVLNIMREKNPDMVAGEKRKFVMKPPQVIRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 238
Query: 888 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 1067
LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
Sbjct: 239 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 298
Query: 1068 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 299 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 331
>ref|XP_001474301.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 2-like
isoform 1 [Mus musculus].
Length = 331
Score = 581 bits (1498), Expect = e-166
Identities = 293/333 (87%), Positives = 300/333 (90%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGDAQTEETQPSETKEVEPEPTE+KDV+ADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDAQTEETQPSETKEVEPEPTEEKDVDADEED 60
Query: 348 SRKKDASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM 527
SRKKDASDDLDDLNFFNQ IFDIDEAEE +KD+KIESD QEPAEPED LDIM
Sbjct: 61 SRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEAIKDVKIESDAQEPAEPEDYLDIM 120
Query: 528 LGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 707
LG FP+EDEILEKDEALEDEDSKKDDGISFS+QT AWAGSERDYTYEELL
Sbjct: 121 LGNKKKKKKNVKFPEEDEILEKDEALEDEDSKKDDGISFSSQT--AWAGSERDYTYEELL 178
Query: 708 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 887
NRV NIMREKNPDMVAGEKRKFVMKPPQV+RVGTKKTSFVNFTDICKLLHRQPKHLLAFL
Sbjct: 179 NRVLNIMREKNPDMVAGEKRKFVMKPPQVIRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 238
Query: 888 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 1067
LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
Sbjct: 239 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 298
Query: 1068 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 299 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 331
>ref|XP_001479641.1| PREDICTED: eukaryotic translation initiation factor 5-like isoform 1
[Mus musculus].
Length = 429
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 813 KTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSID-GNNQLVIKGRFQQKQIENVLRRY 989
KT VN D+ K L+R P + + ELG D N++ ++ G + +++++L +
Sbjct: 33 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92
Query: 990 IKEYVTCHTCRSPDTILQKDTRLYFL--QCETCHSR 1091
IK++V C C +P+T L + + + C+ C R
Sbjct: 93 IKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYR 128
>ref|NP_775539.1| eukaryotic translation initiation factor 5 [Mus musculus].
Length = 429
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 813 KTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSID-GNNQLVIKGRFQQKQIENVLRRY 989
KT VN D+ K L+R P + + ELG D N++ ++ G + +++++L +
Sbjct: 33 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92
Query: 990 IKEYVTCHTCRSPDTILQKDTRLYFL--QCETCHSR 1091
IK++V C C +P+T L + + + C+ C R
Sbjct: 93 IKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYR 128
>ref|NP_829887.1| eukaryotic translation initiation factor 5 [Mus musculus].
Length = 429
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 813 KTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSID-GNNQLVIKGRFQQKQIENVLRRY 989
KT VN D+ K L+R P + + ELG D N++ ++ G + +++++L +
Sbjct: 33 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92
Query: 990 IKEYVTCHTCRSPDTILQKDTRLYFL--QCETCHSR 1091
IK++V C C +P+T L + + + C+ C R
Sbjct: 93 IKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYR 128
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 76,857,807
Number of extensions: 1876121
Number of successful extensions: 9129
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8520
Number of HSP's successfully gapped: 6
Length of query: 903
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 793
Effective length of database: 12,313,599
Effective search space: 9764684007
Effective search space used: 9764684007
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012259
(2709 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003899.2| eukaryotic translation initiation factor 2 subu... 602 e-172
Alignment gi|NP_892116.2| eukaryotic translation initiation factor 5 [Hom... 53 1e-06
Alignment gi|NP_001960.2| eukaryotic translation initiation factor 5 [Hom... 53 1e-06
>ref|NP_003899.2| eukaryotic translation initiation factor 2 subunit 2 [Homo sapiens].
Length = 333
Score = 602 bits (1553), Expect = e-172
Identities = 301/333 (90%), Positives = 304/333 (91%)
Frame = +3
Query: 168 MSGDEMIFDPTMSXXXXXXXXPFMLDEEGDAQTEETQPSETKEVEPEPTEDKDVEADEED 347
MSGDEMIFDPTMS PFMLDEEGD QTEETQPSETKEVEPEPTEDKD+EADEED
Sbjct: 1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED 60
Query: 348 SRKKDASDDLDDLNFFNQXXXXXXXXXIFDIDEAEEGVKDLKIESDVQEPAEPEDDLDIM 527
+RKKDASDDLDDLNFFNQ IFDIDEAEEGVKDLKIESDVQEP EPEDDLDIM
Sbjct: 61 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM 120
Query: 528 LGXXXXXXXXXXFPDEDEILEKDEALEDEDSKKDDGISFSNQTGPAWAGSERDYTYEELL 707
LG FPDEDEILEKDEALEDED+KKDDGISFSNQTGPAWAGSERDYTYEELL
Sbjct: 121 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELL 180
Query: 708 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 887
NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL
Sbjct: 181 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 240
Query: 888 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 1067
LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL
Sbjct: 241 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 300
Query: 1068 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 1166
QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN
Sbjct: 301 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 333
>ref|NP_892116.2| eukaryotic translation initiation factor 5 [Homo sapiens].
Length = 431
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 813 KTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSID-GNNQLVIKGRFQQKQIENVLRRY 989
KT VN D+ K L+R P + + ELG D N++ ++ G + +++++L +
Sbjct: 33 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92
Query: 990 IKEYVTCHTCRSPDTILQKDTRLYFL--QCETCHSR 1091
IK++V C C +P+T L + + + C+ C R
Sbjct: 93 IKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYR 128
>ref|NP_001960.2| eukaryotic translation initiation factor 5 [Homo sapiens].
Length = 431
Score = 53.1 bits (126), Expect = 1e-06
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +3
Query: 813 KTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSID-GNNQLVIKGRFQQKQIENVLRRY 989
KT VN D+ K L+R P + + ELG D N++ ++ G + +++++L +
Sbjct: 33 KTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92
Query: 990 IKEYVTCHTCRSPDTILQKDTRLYFL--QCETCHSR 1091
IK++V C C +P+T L + + + C+ C R
Sbjct: 93 IKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYR 128
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 89,773,766
Number of extensions: 2175237
Number of successful extensions: 10163
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9807
Number of HSP's successfully gapped: 3
Length of query: 903
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 791
Effective length of database: 14,605,196
Effective search space: 11552710036
Effective search space used: 11552710036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012259
(2709 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 2052 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 2052 bits (1035), Expect = 0.0
Identities = 1054/1059 (99%), Gaps = 1/1059 (0%)
Strand = Plus / Plus
Query: 1631 ttatgcttaatgaattcagcaaaacaatttgtgcctgcactcttgtgaagtctccgtatc 1690
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 42862394 ttatgcttaatgaattcagcaaaacaatttgtgcctgcactcttgtgaagtctctgtatc 42862453
Query: 1691 ctcgtcctgagaagcttcagcttagccattttccttctcagcttctcgagatacttgaaa 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862454 ctcgtcctgagaagcttcagcttagccattttccttctcagcttctcgagatacttgaaa 42862513
Query: 1751 tagacacagcttcacacgagagggtggttgaagcatgagatctgggaggacagactgttt 1810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862514 tagacacagcttcacacgagagggtggttgaagcatgagatctgggaggacagactgttt 42862573
Query: 1811 tcagtgtccaggggaagattatatagacatgaattcattatgtgaggattgtggccacta 1870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862574 tcagtgtccaggggaagattatatagacatgaattcattatgtgaggattgtggccacta 42862633
Query: 1871 cctctctgtcaagtcttctagctcttaccacatgagggaatacaaggtgcttcctaagaa 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862634 cctctctgtcaagtcttctagctcttaccacatgagggaatacaaggtgcttcctaagaa 42862693
Query: 1931 ttttcttccttactggctacgaagagtttagagacgtggcctttgaaatgtgtcttgtaa 1990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862694 ttttcttccttactggctacgaagagtttagagacgtggcctttgaaatgtgtcttgtaa 42862753
Query: 1991 ccagcacagcaagaaaaattctagttgggcatctgttggtaaggaaggggtgtaacataa 2050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862754 ccagcacagcaagaaaaattctagttgggcatctgttggtaaggaaggggtgtaacataa 42862813
Query: 2051 tgcagtagagagaactcttttgagagtccaaaccctgatgctagaagcttttctttttcc 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862814 tgcagtagagagaactcttttgagagtccaaaccctgatgctagaagcttttctttttcc 42862873
Query: 2111 tccccaccttgtgttgaatttgaaaaaggcccaccacaaatgcttttctattttctgcat 2170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862874 tccccaccttgtgttgaatttgaaaaaggcccaccacaaatgcttttctattttctgcat 42862933
Query: 2171 taaagcagcttttgaatgtgatcttgagaaaccaagaggtgatgctacttgtctggtgct 2230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862934 taaagcagcttttgaatgtgatcttgagaaaccaagaggtgatgctacttgtctggtgct 42862993
Query: 2231 tctggtgcctcctggttctgccttctgagggtttggctgaaaaggtatttctccactgag 2290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862994 tctggtgcctcctggttctgccttctgagggtttggctgaaaaggtatttctccactgag 42863053
Query: 2291 cacaggggaagagatcatctttcacatctgctgtgatctgccttgcacaccccggataag 2350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42863054 cacaggggaagagatcatctttcacatctgctgtgatctgccttgcacaccccggataag 42863113
Query: 2351 ggcatgatgctgctcctcactttgttgttgccagactgccaggagcagtcacttagccct 2410
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42863114 ggcatgatgctgctcctcactttgttgttgccagactgccaggagcagtcacttagcccc 42863173
Query: 2411 gaatgtcttgaccatgttgttttttaatcactgtgacccttgattttaaagtataggcca 2470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42863174 tgatgtcttgaccatgttgttttttaatcactgtgacccttgattttaaagtataggcca 42863233
Query: 2471 aagtgttgtaaagcaccttgg-ccaagaaatggtggagggggcagagcattccaactcag 2529
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 42863234 aagtgttgtaaagcaccttggcccaagaaatggtggagggggcagagcattccaactcag 42863293
Query: 2530 taagtcctgaggggactacacaccagctgaactgccaccactgccctgatgaactcaact 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42863294 taagtcctgaggggactacacaccagctgaactgccaccactgccctgatgaactcaact 42863353
Query: 2590 gtttatgatttcatcttctttcttttgtatctacatccacacaattcccaatgtcagatg 2649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42863354 gtttatgatttcatcttctttcttttgtatctacatccacacaattcccaatgtcagatg 42863413
Query: 2650 ttactgcgtgaataaagtaaggatcagtgcctcttgtat 2688
|||||||||||||||||||||||||||||||||||||||
Sbjct: 42863414 ttactgcgtgaataaagtaaggatcagtgcctcttgtat 42863452
Score = 1047 bits (528), Expect = 0.0
Identities = 528/528 (100%)
Strand = Plus / Plus
Query: 994 aggaatatgtcacctgtcatacgtgccgatcaccggacacaatcctgcaaaaggacaccc 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42861757 aggaatatgtcacctgtcatacgtgccgatcaccggacacaatcctgcaaaaggacaccc 42861816
Query: 1054 gactctatttcttacagtgcgaaacttgtcattctcgatgctctgttgccagcatcaaaa 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42861817 gactctatttcttacagtgcgaaacttgtcattctcgatgctctgttgccagcatcaaaa 42861876
Query: 1114 ctggcttccaggctgtcacgggcaagcgagcacagctccgtgccaaagctaactaatttg 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42861877 ctggcttccaggctgtcacgggcaagcgagcacagctccgtgccaaagctaactaatttg 42861936
Query: 1174 ctaatcaccactgattttgcaaagtatgttgtggaggttggctggacaggtttaccatca 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42861937 ctaatcaccactgattttgcaaagtatgttgtggaggttggctggacaggtttaccatca 42861996
Query: 1234 gaatggatatataccattgtattaaaaacaagatagaaaagctgccaagttctttggtgt 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42861997 gaatggatatataccattgtattaaaaacaagatagaaaagctgccaagttctttggtgt 42862056
Query: 1294 gtggctggttggtctgaaatccttgcaagatgccgatgctcaaagctgttgacctactca 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862057 gtggctggttggtctgaaatccttgcaagatgccgatgctcaaagctgttgacctactca 42862116
Query: 1354 ttgcctactttaacaactgtcagagaaacatgaggggtaaggcagtgctttttaaaaatc 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862117 ttgcctactttaacaactgtcagagaaacatgaggggtaaggcagtgctttttaaaaatc 42862176
Query: 1414 ggtcatagacttctgtaaaatgcaagataaattaaagttattataacagtgattctttca 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862177 ggtcatagacttctgtaaaatgcaagataaattaaagttattataacagtgattctttca 42862236
Query: 1474 atttggtttgtccttcagttttcttttctataaaaaattatgcttaga 1521
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42862237 atttggtttgtccttcagttttcttttctataaaaaattatgcttaga 42862284
Score = 347 bits (175), Expect = 2e-92
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 8 ctaacgcttgcgaggagagggcggggtgtcgttccctttcgctgatgcaagatcctagtg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42538138 ctaacgcttgcgaggagagggcggggtgtcgttccctttcgctgatgcaagatcctagtg 42538079
Query: 68 cggtggtgagagaggtatcggcaggagcagctctgaagccggggtctgaggctgacccgt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42538078 cggtggtgagagaggtatcggcaggagcagctctgaagccggggtctgaggctgacccgt 42538019
Query: 128 ccgactttccgtctgtgttgagcccactcgagccgcagccatgtccggggacgag 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42538018 ccgactttccgtctgtgttgagcccactcgagccgcagccatgtccggggacgag 42537964
Score = 347 bits (175), Expect = 2e-92
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 8 ctaacgcttgcgaggagagggcggggtgtcgttccctttcgctgatgcaagatcctagtg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42843149 ctaacgcttgcgaggagagggcggggtgtcgttccctttcgctgatgcaagatcctagtg 42843208
Query: 68 cggtggtgagagaggtatcggcaggagcagctctgaagccggggtctgaggctgacccgt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42843209 cggtggtgagagaggtatcggcaggagcagctctgaagccggggtctgaggctgacccgt 42843268
Query: 128 ccgactttccgtctgtgttgagcccactcgagccgcagccatgtccggggacgag 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42843269 ccgactttccgtctgtgttgagcccactcgagccgcagccatgtccggggacgag 42843323
Score = 299 bits (151), Expect = 4e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 700 agctactgaatcgagtgttcaacatcatgagggaaaagaatccagatatggttgctggag 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42856381 agctactgaatcgagtgttcaacatcatgagggaaaagaatccagatatggttgctggag 42856440
Query: 760 agaaaaggaaatttgttatgaaacctccacaggttgtccgagtgggaaccaagaaaactt 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42856441 agaaaaggaaatttgttatgaaacctccacaggttgtccgagtgggaaccaagaaaactt 42856500
Query: 820 cttttgtcaactttacagatatctgtaaact 850
|||||||||||||||||||||||||||||||
Sbjct: 42856501 cttttgtcaactttacagatatctgtaaact 42856531
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 463 aggatcttaagattgaaagtgatgttcaagaaccagctgaaccagaggatgaccttgaca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42854836 aggatcttaagattgaaagtgatgttcaagaaccagctgaaccagaggatgaccttgaca 42854895
Query: 523 ttatgcttggcaataaaaagaagaaaaagaagaatgtcaagttcccagatgaggatgaaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42854896 ttatgcttggcaataaaaagaagaaaaagaagaatgtcaagttcccagatgaggatgaaa 42854955
Query: 583 tactagagaaagatgaag 600
||||||||||||||||||
Sbjct: 42854956 tactagagaaagatgaag 42854973
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 231 ccttttatgttagatgaggaaggggatgcccagacagaagaaactcagccctcagaaaca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42532930 ccttttatgttagatgaggaaggggatgcccagacagaagaaactcagccctcagaaaca 42532871
Query: 291 aaagaagtggagccagagcctactgaagacaaagatgtagaagctgatgaagaggacagt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42532870 aaagaagtggagccagagcctactgaagacaaagatgtagaagctgatgaagaggacagt 42532811
Query: 351 aggaaaaaag 360
||||||||||
Sbjct: 42532810 aggaaaaaag 42532801
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 231 ccttttatgttagatgaggaaggggatgcccagacagaagaaactcagccctcagaaaca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42848357 ccttttatgttagatgaggaaggggatgcccagacagaagaaactcagccctcagaaaca 42848416
Query: 291 aaagaagtggagccagagcctactgaagacaaagatgtagaagctgatgaagaggacagt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42848417 aaagaagtggagccagagcctactgaagacaaagatgtagaagctgatgaagaggacagt 42848476
Query: 351 aggaaaaaag 360
||||||||||
Sbjct: 42848477 aggaaaaaag 42848486
Score = 204 bits (103), Expect = 2e-49
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 599 agctttggaagatgaagacagcaaaaaagacgatggtatctcattcagtaaccagacagg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42855672 agctttggaagatgaagacagcaaaaaagacgatggtatctcattcagtaaccagacagg 42855731
Query: 659 ccctgcttgggcaggctcagaaagagactacacatatgaagag 701
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42855732 ccctgcttgggcaggctcagaaagagactacacatatgaagag 42855774
Score = 174 bits (88), Expect = 2e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 906 agtggttctatagatggtaataaccaactcgtaattaaaggaagattccaacagaaacag 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42861076 agtggttctatagatggtaataaccaactcgtaattaaaggaagattccaacagaaacag 42861135
Query: 966 atagaaaatgttttgagaagatatatca 993
||||||||||||||||||||||||||||
Sbjct: 42861136 atagaaaatgttttgagaagatatatca 42861163
Score = 113 bits (57), Expect = 5e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 851 attacatcgtcagcccaaacatctccttgcctttttattggctgaattgggtacaag 907
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42858580 attacatcgtcagcccaaacatctccttgcctttttattggctgaattgggtacaag 42858636
Score = 91.7 bits (46), Expect = 2e-15
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 359 agatgcttctgatgatctagatgacttgaacttctttaatcagaag 404
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42530908 agatgcttctgatgatctagatgacttgaacttctttaatcagaag 42530863
Score = 91.7 bits (46), Expect = 2e-15
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 359 agatgcttctgatgatctagatgacttgaacttctttaatcagaag 404
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42850379 agatgcttctgatgatctagatgacttgaacttctttaatcagaag 42850424
Score = 75.8 bits (38), Expect = 1e-10
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 428 gatatttgatattgatgaagctgaagaaggtgtaaagg 465
||||||||||||||||||||||||||||||||||||||
Sbjct: 42530839 gatatttgatattgatgaagctgaagaaggtgtaaagg 42530802
Score = 75.8 bits (38), Expect = 1e-10
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 428 gatatttgatattgatgaagctgaagaaggtgtaaagg 465
||||||||||||||||||||||||||||||||||||||
Sbjct: 42850448 gatatttgatattgatgaagctgaagaaggtgtaaagg 42850485
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 93,469,787
Number of extensions: 1241
Number of successful extensions: 1241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1240
Number of HSP's successfully gapped: 15
Length of query: 2709
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2687
Effective length of database: 2,808,408,574
Effective search space: 7546193838338
Effective search space used: 7546193838338
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)