Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012262
(1278 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535358.2| PREDICTED: similar to serine/arginine repetitiv... 158 1e-38
Alignment gi|XP_852745.1| PREDICTED: similar to serine/arginine repetitiv... 140 3e-33
Alignment gi|XP_866316.1| PREDICTED: similar to serine/arginine repetitiv... 104 2e-22
>ref|XP_535358.2| PREDICTED: similar to serine/arginine repetitive matrix 1 isoform 1
[Canis familiaris].
Length = 916
Score = 158 bits (399), Expect = 1e-38
Identities = 89/143 (62%), Positives = 90/143 (62%)
Frame = +3
Query: 78 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 257
TPQQSNRTRKSRVSVSPGRTS VTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTS--VTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 473
Query: 258 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVGXXXXXXXXXXXXXXXXX 437
AD HVKNGEVG
Sbjct: 474 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRK 533
Query: 438 XQKETSPRMQMGKRWQSPMTKSG 506
QKETSPRMQMGKRWQSP+TKSG
Sbjct: 534 RQKETSPRMQMGKRWQSPVTKSG 556
Score = 104 bits (260), Expect = 2e-22
Identities = 57/95 (60%), Positives = 57/95 (60%)
Frame = +3
Query: 801 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCXXXXXXXX 980
QRSSPVTKRRSPSLSSKHRKG SPSRSTRE RSPQPNKRHSPSPRPRAPQT
Sbjct: 655 QRSSPVTKRRSPSLSSKHRKGSSPSRSTREPRSPQPNKRHSPSPRPRAPQTSSSPPPVRR 714
Query: 981 XXXXXXXXXXXXXXXXXXXXXXXXXXEPKKTKKVA 1085
EPKKTKK A
Sbjct: 715 GASSSPQRRQSPSPSTRPIRRVSRTPEPKKTKKAA 749
>ref|XP_852745.1| PREDICTED: similar to serine/arginine repetitive matrix 1 isoform 2
[Canis familiaris].
Length = 904
Score = 140 bits (352), Expect = 3e-33
Identities = 81/138 (58%), Positives = 83/138 (60%)
Frame = +3
Query: 78 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 257
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 475
Query: 258 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVGXXXXXXXXXXXXXXXXX 437
AD HVKNGEVG
Sbjct: 476 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRK 535
Query: 438 XQKETSPRMQMGKRWQSP 491
QKETSPR G+R +SP
Sbjct: 536 RQKETSPR---GRRRRSP 550
Score = 104 bits (260), Expect = 2e-22
Identities = 57/95 (60%), Positives = 57/95 (60%)
Frame = +3
Query: 801 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCXXXXXXXX 980
QRSSPVTKRRSPSLSSKHRKG SPSRSTRE RSPQPNKRHSPSPRPRAPQT
Sbjct: 643 QRSSPVTKRRSPSLSSKHRKGSSPSRSTREPRSPQPNKRHSPSPRPRAPQTSSSPPPVRR 702
Query: 981 XXXXXXXXXXXXXXXXXXXXXXXXXXEPKKTKKVA 1085
EPKKTKK A
Sbjct: 703 GASSSPQRRQSPSPSTRPIRRVSRTPEPKKTKKAA 737
>ref|XP_866316.1| PREDICTED: similar to serine/arginine repetitive matrix 1 isoform 6
[Canis familiaris].
Length = 335
Score = 104 bits (260), Expect = 2e-22
Identities = 57/95 (60%), Positives = 57/95 (60%)
Frame = +3
Query: 801 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCXXXXXXXX 980
QRSSPVTKRRSPSLSSKHRKG SPSRSTRE RSPQPNKRHSPSPRPRAPQT
Sbjct: 74 QRSSPVTKRRSPSLSSKHRKGSSPSRSTREPRSPQPNKRHSPSPRPRAPQTSSSPPPVRR 133
Query: 981 XXXXXXXXXXXXXXXXXXXXXXXXXXEPKKTKKVA 1085
EPKKTKK A
Sbjct: 134 GASSSPQRRQSPSPSTRPIRRVSRTPEPKKTKKAA 168
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,076,513
Number of extensions: 981913
Number of successful extensions: 4994
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4889
Number of HSP's successfully gapped: 5
Length of query: 426
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 320
Effective length of database: 15,340,888
Effective search space: 4909084160
Effective search space used: 4909084160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012262
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012262
(1278 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685753.1| PREDICTED: serine/arginine repetitive matrix... 167 2e-41
Alignment gi|XP_001252332.1| PREDICTED: serine/arginine repetitive matrix... 167 2e-41
>ref|XP_002685753.1| PREDICTED: serine/arginine repetitive matrix 1 [Bos taurus].
Length = 915
Score = 167 bits (422), Expect = 2e-41
Identities = 91/143 (63%), Positives = 91/143 (63%)
Frame = +3
Query: 78 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 257
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 414 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 473
Query: 258 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVGXXXXXXXXXXXXXXXXX 437
AD HVKNGEVG
Sbjct: 474 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRK 533
Query: 438 XQKETSPRMQMGKRWQSPMTKSG 506
QKE SPRMQMGKRWQSPMTKSG
Sbjct: 534 RQKEASPRMQMGKRWQSPMTKSG 556
Score = 102 bits (254), Expect = 7e-22
Identities = 49/51 (96%), Positives = 49/51 (96%)
Frame = +3
Query: 801 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQT 953
QRSSPVTKRRSPSLSSKHRKG SPSRS REARSPQPNKRHSPSPRPRAPQT
Sbjct: 655 QRSSPVTKRRSPSLSSKHRKGSSPSRSAREARSPQPNKRHSPSPRPRAPQT 705
>ref|XP_001252332.1| PREDICTED: serine/arginine repetitive matrix 1 isoform 1 [Bos
taurus].
Length = 915
Score = 167 bits (422), Expect = 2e-41
Identities = 91/143 (63%), Positives = 91/143 (63%)
Frame = +3
Query: 78 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 257
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 414 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 473
Query: 258 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVGXXXXXXXXXXXXXXXXX 437
AD HVKNGEVG
Sbjct: 474 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRK 533
Query: 438 XQKETSPRMQMGKRWQSPMTKSG 506
QKE SPRMQMGKRWQSPMTKSG
Sbjct: 534 RQKEASPRMQMGKRWQSPMTKSG 556
Score = 102 bits (254), Expect = 7e-22
Identities = 49/51 (96%), Positives = 49/51 (96%)
Frame = +3
Query: 801 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQT 953
QRSSPVTKRRSPSLSSKHRKG SPSRS REARSPQPNKRHSPSPRPRAPQT
Sbjct: 655 QRSSPVTKRRSPSLSSKHRKGSSPSRSAREARSPQPNKRHSPSPRPRAPQT 705
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,280,464
Number of extensions: 948597
Number of successful extensions: 4773
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4688
Number of HSP's successfully gapped: 4
Length of query: 426
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 321
Effective length of database: 14,207,134
Effective search space: 4560490014
Effective search space used: 4560490014
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012262
(1278 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127751.2| PREDICTED: serine/arginine repetitive matrix... 140 2e-33
>ref|XP_003127751.2| PREDICTED: serine/arginine repetitive matrix protein 1 [Sus
scrofa].
Length = 904
Score = 140 bits (352), Expect = 2e-33
Identities = 81/138 (58%), Positives = 83/138 (60%)
Frame = +3
Query: 78 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 257
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 475
Query: 258 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVGXXXXXXXXXXXXXXXXX 437
AD HVKNGEVG
Sbjct: 476 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHTPSRSASPSPRK 535
Query: 438 XQKETSPRMQMGKRWQSP 491
QKETSPR G+R +SP
Sbjct: 536 RQKETSPR---GRRRRSP 550
Score = 115 bits (287), Expect = 7e-26
Identities = 61/95 (64%), Positives = 61/95 (64%)
Frame = +3
Query: 801 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCXXXXXXXX 980
QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTC
Sbjct: 643 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCSSPPPARR 702
Query: 981 XXXXXXXXXXXXXXXXXXXXXXXXXXEPKKTKKVA 1085
EPKKTKKVA
Sbjct: 703 GASSSPQRRQSPSPSSRPIRRVSRTPEPKKTKKVA 737
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,052,770
Number of extensions: 611394
Number of successful extensions: 3119
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3065
Number of HSP's successfully gapped: 2
Length of query: 426
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 324
Effective length of database: 8,804,438
Effective search space: 2852637912
Effective search space used: 2852637912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012262
(1278 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123949.1| serine/arginine repetitive matrix protein 1 ... 162 4e-40
Alignment gi|NP_058079.2| serine/arginine repetitive matrix protein 1 iso... 162 4e-40
>ref|NP_001123949.1| serine/arginine repetitive matrix protein 1 isoform 2 [Mus
musculus].
Length = 918
Score = 162 bits (411), Expect = 4e-40
Identities = 89/142 (62%), Positives = 90/142 (63%)
Frame = +3
Query: 78 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 257
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG KMAA
Sbjct: 409 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAA 468
Query: 258 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVGXXXXXXXXXXXXXXXXX 437
AD HVKNGEVG
Sbjct: 469 ADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRK 528
Query: 438 XQKETSPRMQMGKRWQSPMTKS 503
QKETSPRMQMGKRWQSP+TKS
Sbjct: 529 RQKETSPRMQMGKRWQSPVTKS 550
Score = 97.8 bits (242), Expect = 2e-20
Identities = 47/51 (92%), Positives = 47/51 (92%)
Frame = +3
Query: 801 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQT 953
QRS VTKRRSPSLSSKHRKG SP RSTREARSPQPNKRHSPSPRPRAPQT
Sbjct: 657 QRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQT 707
>ref|NP_058079.2| serine/arginine repetitive matrix protein 1 isoform 1 [Mus
musculus].
Length = 923
Score = 162 bits (411), Expect = 4e-40
Identities = 89/142 (62%), Positives = 90/142 (63%)
Frame = +3
Query: 78 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 257
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG KMAA
Sbjct: 414 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAA 473
Query: 258 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVGXXXXXXXXXXXXXXXXX 437
AD HVKNGEVG
Sbjct: 474 ADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRK 533
Query: 438 XQKETSPRMQMGKRWQSPMTKS 503
QKETSPRMQMGKRWQSP+TKS
Sbjct: 534 RQKETSPRMQMGKRWQSPVTKS 555
Score = 97.8 bits (242), Expect = 2e-20
Identities = 47/51 (92%), Positives = 47/51 (92%)
Frame = +3
Query: 801 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQT 953
QRS VTKRRSPSLSSKHRKG SP RSTREARSPQPNKRHSPSPRPRAPQT
Sbjct: 662 QRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQT 712
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,322,037
Number of extensions: 802687
Number of successful extensions: 4148
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4039
Number of HSP's successfully gapped: 4
Length of query: 426
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 322
Effective length of database: 12,493,815
Effective search space: 4023008430
Effective search space used: 4023008430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012262
(1278 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005830.2| serine/arginine repetitive matrix protein 1 [Ho... 140 3e-33
>ref|NP_005830.2| serine/arginine repetitive matrix protein 1 [Homo sapiens].
Length = 904
Score = 140 bits (352), Expect = 3e-33
Identities = 81/138 (58%), Positives = 83/138 (60%)
Frame = +3
Query: 78 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 257
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 475
Query: 258 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVGXXXXXXXXXXXXXXXXX 437
AD HVKNGEVG
Sbjct: 476 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRK 535
Query: 438 XQKETSPRMQMGKRWQSP 491
QKETSPR G+R +SP
Sbjct: 536 RQKETSPR---GRRRRSP 550
Score = 104 bits (259), Expect = 2e-22
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 801 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQT 953
QRSSPVTKRRSPSLSSKHRKG SPSRSTREARSPQPNKRHSPSPRPRAPQT
Sbjct: 643 QRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQT 693
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,250,930
Number of extensions: 962437
Number of successful extensions: 4997
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4948
Number of HSP's successfully gapped: 2
Length of query: 426
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 321
Effective length of database: 14,835,944
Effective search space: 4762338024
Effective search space used: 4762338024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012262
(1278 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 914 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 914 bits (461), Expect = 0.0
Identities = 461/461 (100%)
Strand = Plus / Plus
Query: 612 aggactccttctcctcccccacgtcgacgctcaccttccccaagaagatactctcctcca 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037158 aggactccttctcctcccccacgtcgacgctcaccttccccaagaagatactctcctcca 76037217
Query: 672 atacagaggagatactctccttctccacctccaaagagaagaacagcgtcaccccctcct 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037218 atacagaggagatactctccttctccacctccaaagagaagaacagcgtcaccccctcct 76037277
Query: 732 ccccctaaacgaagggcatcaccatctccgccaccaaagcgtcgggtctcccattcgcca 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037278 ccccctaaacgaagggcatcaccatctccgccaccaaagcgtcgggtctcccattcgcca 76037337
Query: 792 cctcccaaacaaagaagctccccagtcactaagagacgttcaccttcattgtcatcaaag 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037338 cctcccaaacaaagaagctccccagtcactaagagacgttcaccttcattgtcatcaaag 76037397
Query: 852 cataggaaagggccttccccaagccggtctacccgggaagcccggtcaccacaaccaaac 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037398 cataggaaagggccttccccaagccggtctacccgggaagcccggtcaccacaaccaaac 76037457
Query: 912 aaacggcattcgccctcaccacggcctcgagctccgcagacttgctcaagtcctccgcct 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037458 aaacggcattcgccctcaccacggcctcgagctccgcagacttgctcaagtcctccgcct 76037517
Query: 972 gctcgaagaggagcatcgtcatcaccccaaagaaggcagtccccatctccaagttctagg 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037518 gctcgaagaggagcatcgtcatcaccccaaagaaggcagtccccatctccaagttctagg 76037577
Query: 1032 cccattaggagagtctccaggactccggaacccaaaaagac 1072
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037578 cccattaggagagtctccaggactccggaacccaaaaagac 76037618
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 1080 gttgcctcaccaagccctcagtcagtaaggagggtctcatcttctcgatctgtctcggga 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76038509 gttgcctcaccaagccctcagtcagtaaggagggtctcatcttctcgatctgtctcggga 76038568
Query: 1140 tctcctgagccagcagctaaaaaacccccagcacctccatctcctgtccagtctcagtca 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76038569 tctcctgagccagcagctaaaaaacccccagcacctccatctcctgtccagtctcagtca 76038628
Query: 1200 ccttctaccaactggtcaccagcagtaccagtcaaaaaggctaaaagcccgacaccaagc 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76038629 ccttctaccaactggtcaccagcagtaccagtcaaaaaggctaaaagcccgacaccaagc 76038688
Query: 1260 ccatcaccggcaaggg 1275
||||||||||||||||
Sbjct: 76038689 ccatcaccggcaaggg 76038704
Score = 291 bits (147), Expect = 5e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 1 cttcagcaagtcctccaaggcgaaggcataggccctcacctccagcaactccaccaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76020623 cttcagcaagtcctccaaggcgaaggcataggccctcacctccagcaactccaccaccaa 76020682
Query: 61 aaactcgtcattccccaacaccccagcagtcaaatcgtacaaggaagagtcgtgtttctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76020683 aaactcgtcattccccaacaccccagcagtcaaatcgtacaaggaagagtcgtgtttctg 76020742
Query: 121 tctctccagggaggacttcaggtaaag 147
|||||||||||||||||||||||||||
Sbjct: 76020743 tctctccagggaggacttcaggtaaag 76020769
Score = 283 bits (143), Expect = 1e-73
Identities = 146/147 (99%)
Strand = Plus / Plus
Query: 315 gattctggctcctcctcttcctcagaagacgagcgacccaaaaggtcccacgtgaagaat 374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 76030813 gattctggctcctcctcttcctcagaagacgagcgacccaaaaggtcccacgtgaaaaat 76030872
Query: 375 ggtgaggttggcaggcggcggagacataccccttcccggagtgcctctccatcacctcga 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76030873 ggtgaggttggcaggcggcggagacataccccttcccggagtgcctctccatcacctcga 76030932
Query: 435 aagcgccagaaagagacttcccctcgg 461
|||||||||||||||||||||||||||
Sbjct: 76030933 aagcgccagaaagagacttcccctcgg 76030959
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 501 agtggtagacggaggagaagtccttccccaccacccaccagaaggcgacgttctccctct 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76036294 agtggtagacggaggagaagtccttccccaccacccaccagaaggcgacgttctccctct 76036353
Query: 561 cctgctcctccacctcgacgacgcaggtctcccacgccaccaccacgacgaagg 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76036354 cctgctcctccacctcgacgacgcaggtctcccacgccaccaccacgacgaagg 76036407
Score = 174 bits (88), Expect = 8e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 228 gaagaagataaaggtggcaaaatggctgcagcagattctgtgcagcagagacgccaatac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76026340 gaagaagataaaggtggcaaaatggctgcagcagattctgtgcagcagagacgccaatac 76026399
Query: 288 agacgacagaaccagcaatcttcatctg 315
||||||||||||||||||||||||||||
Sbjct: 76026400 agacgacagaaccagcaatcttcatctg 76026427
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 146 agtgacaaaacataaaggtactgagaaaagagagtctccttcaccagcacccaagcctag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76025791 agtgacaaaacataaaggtactgagaaaagagagtctccttcaccagcacccaagcctag 76025850
Query: 206 aaaagtagaattatccgagtcgg 228
|||||||||||||||||||||||
Sbjct: 76025851 aaaagtagaattatccgagtcgg 76025873
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 460 ggatgcagatgggaaagcgatggcaatcgccaatgaccaaaag 502
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76031303 ggatgcagatgggaaagcgatggcaatcgccaatgaccaaaag 76031345
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,256,557
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 8
Length of query: 1278
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1257
Effective length of database: 2,808,413,156
Effective search space: 3530175337092
Effective search space used: 3530175337092
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)