Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012263
(2124 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685753.1| PREDICTED: serine/arginine repetitive matrix... 130 6e-30
Alignment gi|XP_001252332.1| PREDICTED: serine/arginine repetitive matrix... 130 6e-30
>ref|XP_002685753.1| PREDICTED: serine/arginine repetitive matrix 1 [Bos taurus].
Length = 915
Score = 130 bits (326), Expect = 6e-30
Identities = 70/103 (67%), Positives = 70/103 (67%)
Frame = +1
Query: 505 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 684
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 414 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 473
Query: 685 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVG 813
AD HVKNGEVG
Sbjct: 474 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVG 516
Score = 102 bits (254), Expect = 1e-21
Identities = 49/51 (96%), Positives = 49/51 (96%)
Frame = +1
Query: 1186 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQT 1338
QRSSPVTKRRSPSLSSKHRKG SPSRS REARSPQPNKRHSPSPRPRAPQT
Sbjct: 655 QRSSPVTKRRSPSLSSKHRKGSSPSRSAREARSPQPNKRHSPSPRPRAPQT 705
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 1891 DNLDDLEKHLREKALRSMRKAQVSPQS 1971
DNLDDLEKHLREKALRSMRKAQVSPQS
Sbjct: 889 DNLDDLEKHLREKALRSMRKAQVSPQS 915
>ref|XP_001252332.1| PREDICTED: serine/arginine repetitive matrix 1 isoform 1 [Bos
taurus].
Length = 915
Score = 130 bits (326), Expect = 6e-30
Identities = 70/103 (67%), Positives = 70/103 (67%)
Frame = +1
Query: 505 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 684
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 414 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 473
Query: 685 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVG 813
AD HVKNGEVG
Sbjct: 474 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVG 516
Score = 102 bits (254), Expect = 1e-21
Identities = 49/51 (96%), Positives = 49/51 (96%)
Frame = +1
Query: 1186 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQT 1338
QRSSPVTKRRSPSLSSKHRKG SPSRS REARSPQPNKRHSPSPRPRAPQT
Sbjct: 655 QRSSPVTKRRSPSLSSKHRKGSSPSRSAREARSPQPNKRHSPSPRPRAPQT 705
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 1891 DNLDDLEKHLREKALRSMRKAQVSPQS 1971
DNLDDLEKHLREKALRSMRKAQVSPQS
Sbjct: 889 DNLDDLEKHLREKALRSMRKAQVSPQS 915
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,990,764
Number of extensions: 1290457
Number of successful extensions: 6439
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6286
Number of HSP's successfully gapped: 6
Length of query: 708
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 599
Effective length of database: 14,074,782
Effective search space: 8430794418
Effective search space used: 8430794418
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012263
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012263
(2124 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852745.1| PREDICTED: similar to serine/arginine repetitiv... 130 7e-30
Alignment gi|XP_535358.2| PREDICTED: similar to serine/arginine repetitiv... 120 4e-27
Alignment gi|XP_866316.1| PREDICTED: similar to serine/arginine repetitiv... 107 3e-23
>ref|XP_852745.1| PREDICTED: similar to serine/arginine repetitive matrix 1 isoform 2
[Canis familiaris].
Length = 904
Score = 130 bits (326), Expect = 7e-30
Identities = 70/103 (67%), Positives = 70/103 (67%)
Frame = +1
Query: 505 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 684
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 475
Query: 685 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVG 813
AD HVKNGEVG
Sbjct: 476 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVG 518
Score = 107 bits (268), Expect = 3e-23
Identities = 68/165 (41%), Positives = 68/165 (41%)
Frame = +1
Query: 1186 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCXXXXXXXX 1365
QRSSPVTKRRSPSLSSKHRKG SPSRSTRE RSPQPNKRHSPSPRPRAPQT
Sbjct: 643 QRSSPVTKRRSPSLSSKHRKGSSPSRSTREPRSPQPNKRHSPSPRPRAPQTSSSPPPVRR 702
Query: 1366 XXXXXXXXXXXXXXXXXXXXXXXXXXEPKKTKKVAXXXXXXXXXXXXXXXXXXXXXXXXX 1545
EPKKTKK A
Sbjct: 703 GASSSPQRRQSPSPSTRPIRRVSRTPEPKKTKKAASPSPQSVRRVSSSRSVSGSPEPAAK 762
Query: 1546 XXXXXXXXXXXXXXXTNWXXXXXXXXXXXXXXXXXXXRNSDPEGG 1680
TNW RNSDPEGG
Sbjct: 763 KPPAPQSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPARNSDPEGG 807
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 1891 DNLDDLEKHLREKALRSMRKAQVSPQS 1971
DNLDDLEKHLREKALRSMRKAQVSPQS
Sbjct: 878 DNLDDLEKHLREKALRSMRKAQVSPQS 904
>ref|XP_535358.2| PREDICTED: similar to serine/arginine repetitive matrix 1 isoform 1
[Canis familiaris].
Length = 916
Score = 120 bits (302), Expect = 4e-27
Identities = 68/103 (66%), Positives = 68/103 (66%)
Frame = +1
Query: 505 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 684
TPQQSNRTRKSRVSVSPGRTS VTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTS--VTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 473
Query: 685 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVG 813
AD HVKNGEVG
Sbjct: 474 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVG 516
Score = 107 bits (268), Expect = 3e-23
Identities = 68/165 (41%), Positives = 68/165 (41%)
Frame = +1
Query: 1186 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCXXXXXXXX 1365
QRSSPVTKRRSPSLSSKHRKG SPSRSTRE RSPQPNKRHSPSPRPRAPQT
Sbjct: 655 QRSSPVTKRRSPSLSSKHRKGSSPSRSTREPRSPQPNKRHSPSPRPRAPQTSSSPPPVRR 714
Query: 1366 XXXXXXXXXXXXXXXXXXXXXXXXXXEPKKTKKVAXXXXXXXXXXXXXXXXXXXXXXXXX 1545
EPKKTKK A
Sbjct: 715 GASSSPQRRQSPSPSTRPIRRVSRTPEPKKTKKAASPSPQSVRRVSSSRSVSGSPEPAAK 774
Query: 1546 XXXXXXXXXXXXXXXTNWXXXXXXXXXXXXXXXXXXXRNSDPEGG 1680
TNW RNSDPEGG
Sbjct: 775 KPPAPQSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPARNSDPEGG 819
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 1891 DNLDDLEKHLREKALRSMRKAQVSPQS 1971
DNLDDLEKHLREKALRSMRKAQVSPQS
Sbjct: 890 DNLDDLEKHLREKALRSMRKAQVSPQS 916
>ref|XP_866316.1| PREDICTED: similar to serine/arginine repetitive matrix 1 isoform 6
[Canis familiaris].
Length = 335
Score = 107 bits (268), Expect = 3e-23
Identities = 68/165 (41%), Positives = 68/165 (41%)
Frame = +1
Query: 1186 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCXXXXXXXX 1365
QRSSPVTKRRSPSLSSKHRKG SPSRSTRE RSPQPNKRHSPSPRPRAPQT
Sbjct: 74 QRSSPVTKRRSPSLSSKHRKGSSPSRSTREPRSPQPNKRHSPSPRPRAPQTSSSPPPVRR 133
Query: 1366 XXXXXXXXXXXXXXXXXXXXXXXXXXEPKKTKKVAXXXXXXXXXXXXXXXXXXXXXXXXX 1545
EPKKTKK A
Sbjct: 134 GASSSPQRRQSPSPSTRPIRRVSRTPEPKKTKKAASPSPQSVRRVSSSRSVSGSPEPAAK 193
Query: 1546 XXXXXXXXXXXXXXXTNWXXXXXXXXXXXXXXXXXXXRNSDPEGG 1680
TNW RNSDPEGG
Sbjct: 194 KPPAPQSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPARNSDPEGG 238
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 1891 DNLDDLEKHLREKALRSMRKAQVSPQS 1971
DNLDDLEKHLREKALRSMRKAQVSPQS
Sbjct: 309 DNLDDLEKHLREKALRSMRKAQVSPQS 335
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,062,777
Number of extensions: 1248686
Number of successful extensions: 6743
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6597
Number of HSP's successfully gapped: 11
Length of query: 708
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 598
Effective length of database: 15,207,544
Effective search space: 9094111312
Effective search space used: 9094111312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012263
(2124 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127751.2| PREDICTED: serine/arginine repetitive matrix... 130 4e-30
>ref|XP_003127751.2| PREDICTED: serine/arginine repetitive matrix protein 1 [Sus
scrofa].
Length = 904
Score = 130 bits (326), Expect = 4e-30
Identities = 70/103 (67%), Positives = 70/103 (67%)
Frame = +1
Query: 505 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 684
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 475
Query: 685 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVG 813
AD HVKNGEVG
Sbjct: 476 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVG 518
Score = 118 bits (295), Expect = 1e-26
Identities = 72/165 (43%), Positives = 72/165 (43%)
Frame = +1
Query: 1186 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCXXXXXXXX 1365
QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTC
Sbjct: 643 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCSSPPPARR 702
Query: 1366 XXXXXXXXXXXXXXXXXXXXXXXXXXEPKKTKKVAXXXXXXXXXXXXXXXXXXXXXXXXX 1545
EPKKTKKVA
Sbjct: 703 GASSSPQRRQSPSPSSRPIRRVSRTPEPKKTKKVASPSPQSVRRVSSSRSVSGSPEPAAK 762
Query: 1546 XXXXXXXXXXXXXXXTNWXXXXXXXXXXXXXXXXXXXRNSDPEGG 1680
TNW RNSDPEGG
Sbjct: 763 KPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPARNSDPEGG 807
Score = 56.2 bits (134), Expect = 7e-08
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 1891 DNLDDLEKHLREKALRSMRKAQVSPQS 1971
DNLDDLEKHLREKALRSMRKAQVSPQS
Sbjct: 878 DNLDDLEKHLREKALRSMRKAQVSPQS 904
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,331,356
Number of extensions: 956096
Number of successful extensions: 4181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4101
Number of HSP's successfully gapped: 4
Length of query: 708
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 602
Effective length of database: 8,704,850
Effective search space: 5240319700
Effective search space used: 5240319700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012263
(2124 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123949.1| serine/arginine repetitive matrix protein 1 ... 127 3e-29
Alignment gi|NP_058079.2| serine/arginine repetitive matrix protein 1 iso... 127 3e-29
>ref|NP_001123949.1| serine/arginine repetitive matrix protein 1 isoform 2 [Mus
musculus].
Length = 918
Score = 127 bits (320), Expect = 3e-29
Identities = 69/103 (66%), Positives = 69/103 (66%)
Frame = +1
Query: 505 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 684
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG KMAA
Sbjct: 409 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAA 468
Query: 685 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVG 813
AD HVKNGEVG
Sbjct: 469 ADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVG 511
Score = 97.8 bits (242), Expect = 3e-20
Identities = 47/51 (92%), Positives = 47/51 (92%)
Frame = +1
Query: 1186 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQT 1338
QRS VTKRRSPSLSSKHRKG SP RSTREARSPQPNKRHSPSPRPRAPQT
Sbjct: 657 QRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQT 707
Score = 55.1 bits (131), Expect = 2e-07
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1
Query: 1891 DNLDDLEKHLREKALRSMRKAQVSPQS 1971
DNLDDLE+HLREKALRSMRKAQVSPQS
Sbjct: 892 DNLDDLERHLREKALRSMRKAQVSPQS 918
>ref|NP_058079.2| serine/arginine repetitive matrix protein 1 isoform 1 [Mus
musculus].
Length = 923
Score = 127 bits (320), Expect = 3e-29
Identities = 69/103 (66%), Positives = 69/103 (66%)
Frame = +1
Query: 505 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 684
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG KMAA
Sbjct: 414 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAA 473
Query: 685 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVG 813
AD HVKNGEVG
Sbjct: 474 ADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVG 516
Score = 97.8 bits (242), Expect = 3e-20
Identities = 47/51 (92%), Positives = 47/51 (92%)
Frame = +1
Query: 1186 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQT 1338
QRS VTKRRSPSLSSKHRKG SP RSTREARSPQPNKRHSPSPRPRAPQT
Sbjct: 662 QRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQT 712
Score = 55.1 bits (131), Expect = 2e-07
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1
Query: 1891 DNLDDLEKHLREKALRSMRKAQVSPQS 1971
DNLDDLE+HLREKALRSMRKAQVSPQS
Sbjct: 897 DNLDDLERHLREKALRSMRKAQVSPQS 923
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,789,085
Number of extensions: 1021666
Number of successful extensions: 5583
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5390
Number of HSP's successfully gapped: 6
Length of query: 708
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 600
Effective length of database: 12,373,671
Effective search space: 7424202600
Effective search space used: 7424202600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012263
(2124 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005830.2| serine/arginine repetitive matrix protein 1 [Ho... 130 6e-30
>ref|NP_005830.2| serine/arginine repetitive matrix protein 1 [Homo sapiens].
Length = 904
Score = 130 bits (326), Expect = 6e-30
Identities = 70/103 (67%), Positives = 70/103 (67%)
Frame = +1
Query: 505 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 684
TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA
Sbjct: 416 TPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAA 475
Query: 685 ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVKNGEVG 813
AD HVKNGEVG
Sbjct: 476 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVG 518
Score = 104 bits (259), Expect = 4e-22
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +1
Query: 1186 QRSSPVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQT 1338
QRSSPVTKRRSPSLSSKHRKG SPSRSTREARSPQPNKRHSPSPRPRAPQT
Sbjct: 643 QRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQT 693
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 1891 DNLDDLEKHLREKALRSMRKAQVSPQS 1971
DNLDDLEKHLREKALRSMRKAQVSPQS
Sbjct: 878 DNLDDLEKHLREKALRSMRKAQVSPQS 904
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,905,389
Number of extensions: 1217364
Number of successful extensions: 6696
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6599
Number of HSP's successfully gapped: 3
Length of query: 708
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 598
Effective length of database: 14,671,124
Effective search space: 8773332152
Effective search space used: 8773332152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012263
(2124 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 914 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 914 bits (461), Expect = 0.0
Identities = 461/461 (100%)
Strand = Plus / Plus
Query: 997 aggactccttctcctcccccacgtcgacgctcaccttccccaagaagatactctcctcca 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037158 aggactccttctcctcccccacgtcgacgctcaccttccccaagaagatactctcctcca 76037217
Query: 1057 atacagaggagatactctccttctccacctccaaagagaagaacagcgtcaccccctcct 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037218 atacagaggagatactctccttctccacctccaaagagaagaacagcgtcaccccctcct 76037277
Query: 1117 ccccctaaacgaagggcatcaccatctccgccaccaaagcgtcgggtctcccattcgcca 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037278 ccccctaaacgaagggcatcaccatctccgccaccaaagcgtcgggtctcccattcgcca 76037337
Query: 1177 cctcccaaacaaagaagctccccagtcactaagagacgttcaccttcattgtcatcaaag 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037338 cctcccaaacaaagaagctccccagtcactaagagacgttcaccttcattgtcatcaaag 76037397
Query: 1237 cataggaaagggccttccccaagccggtctacccgggaagcccggtcaccacaaccaaac 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037398 cataggaaagggccttccccaagccggtctacccgggaagcccggtcaccacaaccaaac 76037457
Query: 1297 aaacggcattcgccctcaccacggcctcgagctccgcagacttgctcaagtcctccgcct 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037458 aaacggcattcgccctcaccacggcctcgagctccgcagacttgctcaagtcctccgcct 76037517
Query: 1357 gctcgaagaggagcatcgtcatcaccccaaagaaggcagtccccatctccaagttctagg 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037518 gctcgaagaggagcatcgtcatcaccccaaagaaggcagtccccatctccaagttctagg 76037577
Query: 1417 cccattaggagagtctccaggactccggaacccaaaaagac 1457
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 76037578 cccattaggagagtctccaggactccggaacccaaaaagac 76037618
Score = 547 bits (276), Expect = e-153
Identities = 276/276 (100%)
Strand = Plus / Plus
Query: 299 gaagaaggcgttcatcagcatccttgtctggaagtagctcatcatcatcttcgtctcgtt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76020494 gaagaaggcgttcatcagcatccttgtctggaagtagctcatcatcatcttcgtctcgtt 76020553
Query: 359 cccggtcaccgccaaagaaggctccaaagaggacatccagcccccctcgaaaaactcgta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76020554 cccggtcaccgccaaagaaggctccaaagaggacatccagcccccctcgaaaaactcgta 76020613
Query: 419 ggctatctccttcagcaagtcctccaaggcgaaggcataggccctcacctccagcaactc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76020614 ggctatctccttcagcaagtcctccaaggcgaaggcataggccctcacctccagcaactc 76020673
Query: 479 caccaccaaaaactcgtcattccccaacaccccagcagtcaaatcgtacaaggaagagtc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76020674 caccaccaaaaactcgtcattccccaacaccccagcagtcaaatcgtacaaggaagagtc 76020733
Query: 539 gtgtttctgtctctccagggaggacttcaggtaaag 574
||||||||||||||||||||||||||||||||||||
Sbjct: 76020734 gtgtttctgtctctccagggaggacttcaggtaaag 76020769
Score = 442 bits (223), Expect = e-121
Identities = 232/235 (98%)
Strand = Plus / Plus
Query: 1868 aggagactgaaagtgaggccgaagataaccttgatgacttagaaaagcacctgcgcgaaa 1927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76042181 aggagactgaaagtgaggccgaagataaccttgatgacttagaaaagcacctgcgcgaaa 76042240
Query: 1928 aggccctgagatcaatgcggaaggctcaagtgtccccacagtcctaggtggaaatgtttg 1987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76042241 aggccctgagatcaatgcggaaggctcaagtgtccccacagtcctaggtggaaatgtttg 76042300
Query: 1988 ttatgatgtaaattttatttggtttgtgcgcaattcaatttcaaaattgctaaaatgtgt 2047
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 76042301 ttatgatgtaaattttatttggtttgtacgcaattcaatttcaaaattgctaaaatgtgt 76042360
Query: 2048 ttgagctttagactataacatttgttgtaaatattgctaggttgaagttcaccat 2102
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 76042361 ttgagctttagactataacatttgttgtaataattgctaggttgaagttcaccat 76042415
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 1465 gttgcctcaccaagccctcagtcagtaaggagggtctcatcttctcgatctgtctcggga 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76038509 gttgcctcaccaagccctcagtcagtaaggagggtctcatcttctcgatctgtctcggga 76038568
Query: 1525 tctcctgagccagcagctaaaaaacccccagcacctccatctcctgtccagtctcagtca 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76038569 tctcctgagccagcagctaaaaaacccccagcacctccatctcctgtccagtctcagtca 76038628
Query: 1585 ccttctaccaactggtcaccagcagtaccagtcaaaaaggctaaaagcccgacaccaagc 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76038629 ccttctaccaactggtcaccagcagtaccagtcaaaaaggctaaaagcccgacaccaagc 76038688
Query: 1645 ccatcaccggcaagg 1659
|||||||||||||||
Sbjct: 76038689 ccatcaccggcaagg 76038703
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 742 gattctggctcctcctcttcctcagaagacgagcgacccaaaaggtcccacgtgaaaaat 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76030813 gattctggctcctcctcttcctcagaagacgagcgacccaaaaggtcccacgtgaaaaat 76030872
Query: 802 ggtgaggttggcaggcggcggagacataccccttcccggagtgcctctccatcacctcga 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76030873 ggtgaggttggcaggcggcggagacataccccttcccggagtgcctctccatcacctcga 76030932
Query: 862 aagcgccagaaagagacttcccctcg 887
||||||||||||||||||||||||||
Sbjct: 76030933 aagcgccagaaagagacttcccctcg 76030958
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 132 agatcatactcccctagaaggcggccaagcccaagaagacggccatctcctcgaagaaga 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76018318 agatcatactcccctagaaggcggccaagcccaagaagacggccatctcctcgaagaaga 76018377
Query: 192 actccaccgagacgaatgcctcctccaccaaggcatagaaggagtagatctccagtgaga 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76018378 actccaccgagacgaatgcctcctccaccaaggcatagaaggagtagatctccagtgaga 76018437
Query: 252 cggt 255
||||
Sbjct: 76018438 cggt 76018441
Score = 224 bits (113), Expect = 2e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 887 gtggtagacggaggagaagtccttccccaccacccaccagaaggcgacgttctccctctc 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76036295 gtggtagacggaggagaagtccttccccaccacccaccagaaggcgacgttctccctctc 76036354
Query: 947 ctgctcctccacctcgacgacgcaggtctcccacgccaccaccacgacgaagg 999
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76036355 ctgctcctccacctcgacgacgcaggtctcccacgccaccaccacgacgaagg 76036407
Score = 222 bits (112), Expect = 6e-55
Identities = 115/116 (99%)
Strand = Plus / Plus
Query: 8 caaaaaggaaaaggaaaaggagaaggccagaccaagatctcggtcacgttccaagtcaag 67
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 76017803 caaaaaggaaaaggaaaaggagaagaccagaccaagatctcggtcacgttccaagtcaag 76017862
Query: 68 atcccggacacgttctcgctctccttctcatactcgacctagaaggcgccatagat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76017863 atcccggacacgttctcgctctccttctcatactcgacctagaaggcgccatagat 76017918
Score = 208 bits (105), Expect = 9e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1766 ctgtggctgcagccgctgcagctgctgtgacccctacagccattgctgctcccacaacca 1825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76040930 ctgtggctgcagccgctgcagctgctgtgacccctacagccattgctgctcccacaacca 76040989
Query: 1826 catcagcacaggaagaaccggaggcagagccagagcctaagaagg 1870
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76040990 catcagcacaggaagaaccggaggcagagccagagcctaagaagg 76041034
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 655 gaagaagataaaggtggcaaaatggctgcagcagattctgtgcagcagagacgccaatac 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76026340 gaagaagataaaggtggcaaaatggctgcagcagattctgtgcagcagagacgccaatac 76026399
Query: 715 agacgacagaaccagcaatcttcatctg 742
||||||||||||||||||||||||||||
Sbjct: 76026400 agacgacagaaccagcaatcttcatctg 76026427
Score = 165 bits (83), Expect = 1e-37
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 573 agtgacaaaacataaaggtactgagaaaagagagtctccttcaccagcacccaagcctag 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76025791 agtgacaaaacataaaggtactgagaaaagagagtctccttcaccagcacccaagcctag 76025850
Query: 633 aaaagtagaattatccgagtcgg 655
|||||||||||||||||||||||
Sbjct: 76025851 aaaagtagaattatccgagtcgg 76025873
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 57,189,317
Number of extensions: 674
Number of successful extensions: 674
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 11
Length of query: 2124
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2102
Effective length of database: 2,808,408,574
Effective search space: 5903274822548
Effective search space used: 5903274822548
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)