BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012273
         (2281 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535336.2| PREDICTED: similar to YTH domain protein 2 (Hig...  1021   0.0  
Alignment   gi|XP_858244.1| PREDICTED: similar to YTH domain protein 2 (Hig...   714   0.0  
Alignment   gi|XP_849198.1| PREDICTED: similar to YTH domain family 1 isofo...   713   0.0  
Alignment   gi|XP_858081.1| PREDICTED: similar to YTH domain family 1 isofo...   712   0.0  
Alignment   gi|XP_857911.1| PREDICTED: similar to YTH domain family 3 isofo...   712   0.0  
Alignment   gi|XP_858124.1| PREDICTED: similar to YTH domain family 3 isofo...   708   0.0  
Alignment   gi|XP_544099.2| PREDICTED: similar to YTH domain family 3 isofo...   695   0.0  
Alignment   gi|XP_543093.2| PREDICTED: similar to YTH domain protein 1 (Der...   671   0.0  
Alignment   gi|XP_858199.1| PREDICTED: similar to YTH domain family 3 isofo...   649   0.0  
Alignment   gi|XP_857953.1| PREDICTED: similar to YTH domain family, member...   639   0.0  

>ref|XP_535336.2| PREDICTED: similar to YTH domain protein 2 (High-glucose-regulated
            protein 8) (NY-REN-2 antigen) (CLL-associated antigen
            KW-14) [Canis familiaris].
          Length = 712

 Score = 1021 bits (2639), Expect = 0.0
 Identities = 508/578 (87%), Positives = 510/578 (88%)
 Frame = +3

Query: 351  ASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXXXX 530
            ASS  E    G    VQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAM           
Sbjct: 135  ASSFPECFAPGPFRVVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYYSP 194

Query: 531  XIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGF 710
             IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGF
Sbjct: 195  SIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGF 254

Query: 711  NFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAPGM 890
            NFFPSGIDFSAW                   AYAPSSLGGAMIDGQSAFASETLNKAPGM
Sbjct: 255  NFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFASETLNKAPGM 314

Query: 891  NTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWADI 1070
            NTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSIT NIVAS+SLPPATIAPPKPASWADI
Sbjct: 315  NTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITGNIVASNSLPPATIAPPKPASWADI 374

Query: 1071 ASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQPTQ 1250
            ASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQPTQ
Sbjct: 375  ASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQPTQ 434

Query: 1251 GSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRGSGF 1430
            GSPQPVGQQA +SPPVAQASVG                         TRWVAPRNRGSGF
Sbjct: 435  GSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQATQPTRWVAPRNRGSGF 494

Query: 1431 GHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSED 1610
            GHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSED
Sbjct: 495  GHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSED 554

Query: 1611 DIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNT 1790
            DIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNT
Sbjct: 555  DIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNT 614

Query: 1791 CAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVL 1970
            CAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVL
Sbjct: 615  CAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVL 674

Query: 1971 KIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            KIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK
Sbjct: 675  KIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 712


>ref|XP_858244.1| PREDICTED: similar to YTH domain protein 2 (High-glucose-regulated
            protein 8) (NY-REN-2 antigen) (CLL-associated antigen
            KW-14) isoform 10 [Canis familiaris].
          Length = 557

 Score =  714 bits (1844), Expect = 0.0
 Identities = 366/584 (62%), Positives = 425/584 (72%), Gaps = 9/584 (1%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   +N+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F ++TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQN 1229
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP       
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAP------- 289

Query: 1230 IGQQPTQGSPQPVGQQATSSP-PVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVA 1406
                PTQ  PQP   Q    P P AQ                              RWVA
Sbjct: 290  ----PTQPQPQPPQPQQQQGPQPQAQPH-----------------QVQPQQQQLQNRWVA 328

Query: 1407 PRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNPKDFDWNLKHG 1577
            PRNRG+GF  +NGV G   G       ++PS  E HPVLEKL++INNYNPKDFDWNLK+G
Sbjct: 329  PRNRGAGFNQNNGVGGENFGLGVVPVSASPSNVEVHPVLEKLKAINNYNPKDFDWNLKNG 388

Query: 1578 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 1757
            RVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLFSVNGSGHFCGV
Sbjct: 389  RVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGV 448

Query: 1758 AEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQ 1937
            AEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+NKPVTNSRDTQ
Sbjct: 449  AEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQ 508

Query: 1938 EVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            EVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 509  EVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 552


>ref|XP_849198.1| PREDICTED: similar to YTH domain family 1 isoform 2 [Canis
            familiaris].
          Length = 568

 Score =  713 bits (1840), Expect = 0.0
 Identities = 366/594 (61%), Positives = 427/594 (71%), Gaps = 19/594 (3%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   +N+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F ++TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPS------ 1211
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP       
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP 296

Query: 1212 -QALVQN----IGQQPTQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXX 1376
             Q ++Q     I   P Q  PQP  Q     P   Q                        
Sbjct: 297  PQTIIQQPQPLIQPPPLQQGPQPQAQPHQVQPQQQQLQ---------------------- 334

Query: 1377 XXXXXTRWVAPRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNP 1547
                  RWVAPRNRG+GF  +NGV G   G       ++PS  E HPVLEKL++INNYNP
Sbjct: 335  -----NRWVAPRNRGAGFNQNNGVGGENFGLGVVPVSASPSNVEVHPVLEKLKAINNYNP 389

Query: 1548 KDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFS 1727
            KDFDWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLFS
Sbjct: 390  KDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFS 449

Query: 1728 VNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNEN 1907
            VNGSGHFCGVAEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+N
Sbjct: 450  VNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDN 509

Query: 1908 KPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            KPVTNSRDTQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 510  KPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 563


>ref|XP_858081.1| PREDICTED: similar to YTH domain family 1 isoform 7 [Canis
            familiaris].
          Length = 571

 Score =  712 bits (1839), Expect = 0.0
 Identities = 369/591 (62%), Positives = 429/591 (72%), Gaps = 16/591 (2%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   +N+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F ++TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV-- 1223
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP    V  
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP 296

Query: 1224 -QNIGQQPTQG-SPQPVGQ----QATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXX 1385
             Q I QQP     P P+ Q    Q    PP  Q   G                       
Sbjct: 297  PQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQ------------------- 337

Query: 1386 XXTRWVAPRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNPKDF 1556
               RWVAPRNRG+GF  +NGV G   G       ++PS  E HPVLEKL++INNYNPKDF
Sbjct: 338  --NRWVAPRNRGAGFNQNNGVGGENFGLGVVPVSASPSNVEVHPVLEKLKAINNYNPKDF 395

Query: 1557 DWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNG 1736
            DWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLFSVNG
Sbjct: 396  DWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNG 455

Query: 1737 SGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPV 1916
            SGHFCGVAEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+NKPV
Sbjct: 456  SGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPV 515

Query: 1917 TNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            TNSRDTQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 516  TNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 566


>ref|XP_857911.1| PREDICTED: similar to YTH domain family 3 isoform 3 [Canis
            familiaris].
          Length = 585

 Score =  712 bits (1839), Expect = 0.0
 Identities = 369/591 (62%), Positives = 429/591 (72%), Gaps = 16/591 (2%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   +N+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F ++TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV-- 1223
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP    V  
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP 296

Query: 1224 -QNIGQQPTQG-SPQPVGQ----QATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXX 1385
             Q I QQP     P P+ Q    Q    PP  Q   G                       
Sbjct: 297  PQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQ----- 351

Query: 1386 XXTRWVAPRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNPKDF 1556
               RWVAPRNRG+GF  +NGV G   G       ++PS  E HPVLEKL++INNYNPKDF
Sbjct: 352  --NRWVAPRNRGAGFNQNNGVGGENFGLGVVPVSASPSNVEVHPVLEKLKAINNYNPKDF 409

Query: 1557 DWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNG 1736
            DWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLFSVNG
Sbjct: 410  DWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNG 469

Query: 1737 SGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPV 1916
            SGHFCGVAEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+NKPV
Sbjct: 470  SGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPV 529

Query: 1917 TNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            TNSRDTQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 530  TNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 580


>ref|XP_858124.1| PREDICTED: similar to YTH domain family 3 isoform 8 [Canis
            familiaris].
          Length = 567

 Score =  708 bits (1827), Expect = 0.0
 Identities = 365/585 (62%), Positives = 426/585 (72%), Gaps = 10/585 (1%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   +N+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPG




Animal-Genome cDNA 20110601C-012273


Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012273
         (2281 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069721.1| YTH domain family protein 2 [Bos taurus].        1051   0.0  
Alignment   gi|NP_001179442.1| YTH domain family protein 3 [Bos taurus].         714   0.0  
Alignment   gi|XP_002692740.1| PREDICTED: YTH domain family, member 3 [Bos ...   714   0.0  
Alignment   gi|XP_002692451.1| PREDICTED: YTH domain family 1-like isoform ...   676   0.0  
Alignment   gi|XP_580915.4| PREDICTED: YTH domain family 1-like isoform 2 [...   676   0.0  
Alignment   gi|NP_001178345.1| YTH domain family protein 1 [Bos taurus].         671   0.0  
Alignment   gi|XP_002692452.1| PREDICTED: YTH domain family 1-like isoform ...   671   0.0  
Alignment   gi|NP_001039985.1| YTH domain-containing protein 1 [Bos taurus].      71   4e-12
Alignment   gi|NP_001179740.1| probable ATP-dependent RNA helicase YTHDC2 [...    69   2e-11
Alignment   gi|XP_002690451.1| PREDICTED: YTH domain containing 2-like [Bos...    69   2e-11

>ref|NP_001069721.1| YTH domain family protein 2 [Bos taurus].
          Length = 580

 Score = 1051 bits (2718), Expect = 0.0
 Identities = 520/580 (89%), Positives = 523/580 (90%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXX 524
            MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAM         
Sbjct: 1    MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY 60

Query: 525  XXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 704
               IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH
Sbjct: 61   SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 120

Query: 705  GFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAP 884
            GFNFFPSGIDFSAW                   AYAPSSLGGAMIDGQSAFASETLNKAP
Sbjct: 121  GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFASETLNKAP 180

Query: 885  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 1064
            GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVAS+SLPPATIAPPKPASWA
Sbjct: 181  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA 240

Query: 1065 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQP 1244
            DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQP
Sbjct: 241  DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQP 300

Query: 1245 TQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRGS 1424
            TQGSPQPVGQQA +SPPVAQASVG                         TRWVAPRNRGS
Sbjct: 301  TQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGS 360

Query: 1425 GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS 1604
            GFGHNGVDGNGVGQ+QAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS
Sbjct: 361  GFGHNGVDGNGVGQTQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS 420

Query: 1605 EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY 1784
            EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY
Sbjct: 421  EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY 480

Query: 1785 NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ 1964
            NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ
Sbjct: 481  NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ 540

Query: 1965 VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK
Sbjct: 541  VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 580


>ref|NP_001179442.1| YTH domain family protein 3 [Bos taurus].
          Length = 585

 Score =  714 bits (1842), Expect = 0.0
 Identities = 370/591 (62%), Positives = 428/591 (72%), Gaps = 16/591 (2%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   NN+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQNNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F S+TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGSDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV-- 1223
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP    V  
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP 296

Query: 1224 -QNIGQQPTQG-SPQPVGQ----QATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXX 1385
             Q I QQP     P P+ Q    Q    PP AQ   G                       
Sbjct: 297  PQTIIQQPQPLIQPPPLVQSQLPQPQPQPPQAQQPQGPQPQAQPHQVQPPQPQLQ----- 351

Query: 1386 XXTRWVAPRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNPKDF 1556
               RWVAPRNRG+GF  +NG      G       ++PS  E HPVLEKL++INNYNPKDF
Sbjct: 352  --NRWVAPRNRGAGFNQNNGASSENFGLGVVPVSASPSSVEVHPVLEKLKAINNYNPKDF 409

Query: 1557 DWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNG 1736
            DWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLFSVNG
Sbjct: 410  DWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNG 469

Query: 1737 SGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPV 1916
            SGHFCGVAEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+NKPV
Sbjct: 470  SGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPV 529

Query: 1917 TNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            TNSRDTQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 530  TNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 580


>ref|XP_002692740.1| PREDICTED: YTH domain family, member 3 [Bos taurus].
          Length = 585

 Score =  714 bits (1842), Expect = 0.0
 Identities = 370/591 (62%), Positives = 428/591 (72%), Gaps = 16/591 (2%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   NN+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQNNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F S+TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGSDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV-- 1223
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP    V  
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP 296

Query: 1224 -QNIGQQPTQG-SPQPVGQ----QATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXX 1385
             Q I QQP     P P+ Q    Q    PP AQ   G                       
Sbjct: 297  PQTIIQQPQPLIQPPPLVQSQLPQPQPQPPQAQQPQGPQPQAQPHQVQPPQPQLQ----- 351

Query: 1386 XXTRWVAPRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNPKDF 1556
               RWVAPRNRG+GF  +NG      G       ++PS  E HPVLEKL++INNYNPKDF
Sbjct: 352  --NRWVAPRNRGAGFNQNNGASSENFGLGVVPVSASPSSVEVHPVLEKLKAINNYNPKDF 409

Query: 1557 DWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNG 1736
            DWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLFSVNG
Sbjct: 410  DWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNG 469

Query: 1737 SGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPV 1916
            SGHFCGVAEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+NKPV
Sbjct: 470  SGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPV 529

Query: 1917 TNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            TNSRDTQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 530  TNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 580


>ref|XP_002692451.1| PREDICTED: YTH domain family 1-like isoform 1 [Bos taurus].
          Length = 559

 Score =  676 bits (1743), Expect = 0.0
 Identities = 348/587 (59%), Positives = 413/587 (70%), Gaps = 7/587 (1%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXX 524
            MSA+S+  QR KGQ NKVQNGS+HQKD ++D+DFEPYLS Q+  +N+Y +M         
Sbjct: 1    MSATSVDPQRTKGQDNKVQNGSLHQKDTVHDNDFEPYLSGQSNQSNSYPSMADPYLSSYY 60

Query: 525  XXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 704
               IGF YSL EA WSTGGD  +PYLT+YGQLSNG+ HF+ DA+FGQPG LGS  +  QH
Sbjct: 61   PPSIGFPYSLNEAPWSTGGDPPIPYLTTYGQLSNGDHHFVHDAVFGQPGGLGSNIY--QH 118

Query: 705  GFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAP 884
             FNFFP    FSAW                    Y PSSLGG ++DGQ+ F  +TLNKAP
Sbjct: 119  RFNFFPENPAFSAWGTSGSQGQQAQSSAYGNSYTYPPSSLGGTIVDGQTGFHGDTLNKAP 178

Query: 885  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 1064
            GMN+++QGM  LK+G  +V ++  K VGS V S ++T  I++ +      +   KP SWA
Sbjct: 179  GMNSLEQGMVGLKIG--DVTTSAVKTVGSVVSSVAMTG-ILSGNGGTNVPLPVSKPTSWA 235

Query: 1065 DIASKPAKQQPKLKTKNGIA-GSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQ 1241
             IASKPAK QPK+K K+G A G +LPPPPIKHNMDIGTWDNKGPV KAP+   V      
Sbjct: 236  AIASKPAKPQPKMKAKSGPAIGGALPPPPIKHNMDIGTWDNKGPVPKAPAPQQVPASSAA 295

Query: 1242 PTQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRG 1421
            P    PQP  Q   + PP+                               TRWVAPR+R 
Sbjct: 296  P---QPQPAMQPLPAQPPLPAPP-----------------QHTGPQQLPQTRWVAPRSRN 335

Query: 1422 SGFGHNGVDGNGVGQSQAGSG-----STPS-EPHPVLEKLRSINNYNPKDFDWNLKHGRV 1583
            + FG  G    G+G     SG     +TPS E HPVLEKL++ ++YNPK+FDWNLK GRV
Sbjct: 336  AAFGQTG----GLGSDSNSSGGAQPSTTPSAESHPVLEKLKAAHSYNPKEFDWNLKSGRV 391

QuerALG+TP FL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F ++TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQA--LV 1223
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V +   Q   LV
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVPQPLIQPPPLV 296

Query: 1224 QNIGQQPTQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWV 1403
            Q+  Q P Q    P  QQ     P AQ                              RWV
Sbjct: 297  QS--QLPQQQPQPPQPQQQQGPQPQAQPH-----------------QVQPQQQQLQNRWV 337

Query: 1404 APRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNPKDFDWNLKH 1574
            APRNRG+GF  +NGV G   G       ++PS  E HPVLEKL++INNYNPKDFDWNLK+
Sbjct: 338  APRNRGAGFNQNNGVGGENFGLGVVPVSASPSNVEVHPVLEKLKAINNYNPKDFDWNLKN 397

Query: 1575 GRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCG 1754
            GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLFSVNGSGHFCG
Sbjct: 398  GRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCG 457

Query: 1755 VAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDT 1934
            VAEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+NKPVTNSRDT
Sbjct: 458  VAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDT 517

Query: 1935 QEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            QEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 518  QEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 562


>ref|XP_544099.2| PREDICTED: similar to YTH domain family 3 isoform 1 [Canis
            familiaris].
          Length = 588

 Score =  695 bits (1793), Expect = 0.0
 Identities = 356/572 (62%), Positives = 413/572 (72%), Gaps = 14/572 (2%)
 Frame = +3

Query: 396  VQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXXXXXIGFSYSLGEAAWST 575
            VQNGS+HQKD +NDDDFEPYLS Q   +N+Y  M            IGF YSLGEAAWST
Sbjct: 22   VQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPSYYAPSIGFPYSLGEAAWST 81

Query: 576  GGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FLGQHGFNFFPSGIDFSAWXX 752
             GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FLGQHGFNFFP   DFS W  
Sbjct: 82   AGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLGQHGFNFFPGNADFSTWGT 141

Query: 753  XXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAPGMNTIDQGMAALKLGS 932
                              Y PSSLG A+ DGQ+ F ++TL+K PG+++I+QGM  LK+G 
Sbjct: 142  SGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSKVPGISSIEQGMTGLKIGG 201

Query: 933  TEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWADIASKPAKQQPKLKTK 1112
             ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP SWA IA KPAK QPKLK K
Sbjct: 202  -DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPK 258

Query: 1113 N--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV---QNIGQQPTQG-SPQPVGQ 1274
               GI GS++PPPPIKHNM+IGTWD KG V KAP    V   Q I QQP     P P+ Q
Sbjct: 259  GNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTIIQQPQPLIQPPPLVQ 318

Query: 1275 ----QATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRGSGFG-HN 1439
                Q    PP  Q   G                          RWVAPRNRG+GF  +N
Sbjct: 319  SQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQ-------NRWVAPRNRGAGFNQNN 371

Query: 1440 GVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDD 1613
            GV G   G       ++PS  E HPVLEKL++INNYNPKDFDWNLK+GRVFIIKSYSEDD
Sbjct: 372  GVGGENFGLGVVPVSASPSNVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDD 431

Query: 1614 IHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTC 1793
            IHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLFSVNGSGHFCGVAEMKS VDYN  
Sbjct: 432  IHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAY 491

Query: 1794 AGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLK 1973
            AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+NKPVTNSRDTQEVPLEKAKQVLK
Sbjct: 492  AGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLK 551

Query: 1974 IIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            IIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 552  IIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 583


>ref|XP_543093.2| PREDICTED: similar to YTH domain protein 1 (Dermatomyositis
            associated with cancer putative autoantigen-1 homolog)
            (DACA-1 homolog) [Canis familiaris].
          Length = 812

 Score =  671 bits (1732), Expect = 0.0
 Identities = 346/568 (60%), Positives = 404/568 (71%), Gaps = 5/568 (0%)
 Frame = +3

Query: 396  VQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXXXXXIGFSYSLGEAAWST 575
            VQNGS+HQKD ++D+DFEPYLS Q+  +N+Y +M            IGF YSL EA WST
Sbjct: 271  VQNGSLHQKDTVHDNDFEPYLSGQSNQSNSYPSMADPYLSSYYPPSIGFPYSLNEAPWST 330

Query: 576  GGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFNFFPSGIDFSAWXXX 755
            GGD  +PYLT+YGQLSNG+ HF+ DA+FGQPG LG+  +  QH FNFFP    FSAW   
Sbjct: 331  GGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGNNIY--QHRFNFFPENPAFSAWGTS 388

Query: 756  XXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAPGMNTIDQGMAALKLGST 935
                             Y PSSLGG ++DGQ+ F SETLNKAPGMN+++QGM  LK+G  
Sbjct: 389  GSQGQQAQSSAYGSSYTYPPSSLGGTIVDGQTGFHSETLNKAPGMNSLEQGMVGLKIG-- 446

Query: 936  EVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWADIASKPAKQQPKLKTKN 1115
            +V ++  K VGS V S ++T  +++ +      +   KP SWA IASKPAK QPK+K K+
Sbjct: 447  DVTTSAVKTVGSVVSSVAMTG-VLSGNGGTNVNMPVSKPTSWAAIASKPAKPQPKMKAKS 505

Query: 1116 G-IAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQPTQGSPQPVGQQA-TSS 1289
            G + G++LPPPPIKHNMDIGTWDN+GPV KAP+    Q      +   PQPV Q   T  
Sbjct: 506  GPVIGAALPPPPIKHNMDIGTWDNQGPVPKAPAP---QQAPAPQSAPQPQPVVQPLPTQP 562

Query: 1290 PPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRGSGFGHNG---VDGNGV 1460
            PP+AQ                             TRWVAPRNR + FG +G    DGN  
Sbjct: 563  PPLAQPQY------------------PSPQQPPQTRWVAPRNRNAAFGQSGGTSSDGNSP 604

Query: 1461 GQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNI 1640
            G +Q  S  T  E HPVLEKL++ ++YNPK+FDWNLK GRVFIIKSYSEDDIHRSIKY+I
Sbjct: 605  GNTQPSSAPTV-ESHPVLEKLKAAHSYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSI 663

Query: 1641 WCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKW 1820
            WCSTEHGNKRLD A+R+ + KGPVYLLFSVNGSGHFCGVAEMKS VDY T AGVWSQDKW
Sbjct: 664  WCSTEHGNKRLDGAFRAASSKGPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKW 723

Query: 1821 KGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTT 2000
            KG+FDV+WIFVKDVPN+QLRHIRLENN+NKPVTNSRDTQEVPLEKAKQVLKIIASYKHTT
Sbjct: 724  KGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTT 783

Query: 2001 SIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            SIFDDFSHYEKRQEEEE V+KERQ R K
Sbjct: 784  SIFDDFSHYEKRQEEEEVVRKERQNRNK 811


>ref|XP_858199.1| PREDICTED: similar to YTH domain family 3 isoform 9 [Canis
            familiaris].
          Length = 534

 Score =  649 bits (1674), Expect = 0.0
 Identities = 333/526 (63%), Positives = 386/526 (73%), Gaps = 14/526 (2%)
 Frame = +3

Query: 534  IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FLGQHGF 710
            IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FLGQHGF
Sbjct: 14   IGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLGQHGF 73

Query: 711  NFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAPGM 890
            NFFP   DFS W                    Y PSSLG A+ DGQ+ F ++TL+K PG+
Sbjct: 74   NFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSKVPGI 133

Query: 891  NTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWADI 1070
            ++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP SWA I
Sbjct: 134  SSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPTSWAAI 190

Query: 1071 ASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV---QNIG 1235
            A KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP    V   Q I 
Sbjct: 191  ARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTII 250

Query: 1236 QQPTQG-SPQPVGQ----QATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRW 1400
            QQP     P P+ Q    Q    PP  Q   G                          RW
Sbjct: 251  QQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQ-------NRW 303

Query: 1401 VAPRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNPKDFDWNLK 1571
            VAPRNRG+GF  +NGV G   G       ++PS  E HPVLEKL++INNYNPKDFDWNLK
Sbjct: 304  VAPRNRGAGFNQNNGVGGENFGLGVVPVSASPSNVEVHPVLEKLKAINNYNPKDFDWNLK 363

Query: 1572 HGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFC 1751
            +GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLFSVNGSGHFC
Sbjct: 364  NGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFC 423

Query: 1752 GVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRD 1931
            GVAEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+NKPVTNSRD
Sbjct: 424  GVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRD 483

Query: 1932 TQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            TQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 484  TQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 529


>ref|XP_857953.1| PREDICTED: similar to YTH domain family, member 3 isoform 4 [Canis
            familiaris].
          Length = 554

 Score =  639 bits (1647), Expect = 0.0
 Identities = 344/591 (58%), Positives = 400/591 (67%), Gaps = 16/591 (2%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   +N+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F ++TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV-- 1223
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP    V  
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP 296

Query: 1224 -QNIGQQPTQG-SPQPVGQ----QATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXX 1385
             Q I QQP     P P+ Q    Q    PP  Q   G                       
Sbjct: 297  PQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQ----- 351

Query: 1386 XXTRWVAPRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNPKDF 1556
               RWVAPRNRG+GF  +NGV G   G       ++PS  E HPVLEKL++INNYNPKDF
Sbjct: 352  --NRWVAPRNRGAGFNQNNGVGGENFGLGVVPVSASPSNVEVHPVLEKLKAINNYNPKDF 409

Query: 1557 DWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNG 1736
            DWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLFSVNG
Sbjct: 410  DWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNG 469

Query: 1737 SGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPV 1916
            SGHFCGVAEMKS VDY                               RHIRLENN+NKPV
Sbjct: 470  SGHFCGVAEMKSVVDY-------------------------------RHIRLENNDNKPV 498

Query: 1917 TNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            TNSRDTQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 499  TNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 549


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 82,777,716
Number of extensions: 2158050
Number of successful extensions: 8182
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 7996
Number of HSP's successfully gapped: 19
Length of query: 760
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 649
Effective length of database: 15,174,208
Effective search space: 9848060992
Effective search space used: 9848060992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

y: 1584 FIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAE 1763
            FIIKSYSEDD+HRSIKY++WCSTEHGN+RLD+A+R++  KGPVYLLFSVNGSGHFCGVAE
Sbjct: 392  FIIKSYSEDDVHRSIKYSLWCSTEHGNRRLDSAFRALGSKGPVYLLFSVNGSGHFCGVAE 451

Query: 1764 MKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEV 1943
            MKS VDY T AGVWSQDKWKG+FDV+WIFVKDVPNSQLRHIRLENN+NKPVTNSRDTQEV
Sbjct: 452  MKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNSQLRHIRLENNDNKPVTNSRDTQEV 511

Query: 1944 PLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            PLEKA+QVL+IIASY+H+TSIFDDFSHYE+RQEEEE V+KERQ R K
Sbjct: 512  PLEKARQVLRIIASYRHSTSIFDDFSHYERRQEEEEVVRKERQSRNK 558


>ref|XP_580915.4| PREDICTED: YTH domain family 1-like isoform 2 [Bos taurus].
          Length = 559

 Score =  676 bits (1743), Expect = 0.0
 Identities = 348/587 (59%), Positives = 413/587 (70%), Gaps = 7/587 (1%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXX 524
            MSA+S+  QR KGQ NKVQNGS+HQKD ++D+DFEPYLS Q+  +N+Y +M         
Sbjct: 1    MSATSVDPQRTKGQDNKVQNGSLHQKDTVHDNDFEPYLSGQSNQSNSYPSMADPYLSSYY 60

Query: 525  XXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 704
               IGF YSL EA WSTGGD  +PYLT+YGQLSNG+ HF+ DA+FGQPG LGS  +  QH
Sbjct: 61   PPSIGFPYSLNEAPWSTGGDPPIPYLTTYGQLSNGDHHFVHDAVFGQPGGLGSNIY--QH 118

Query: 705  GFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAP 884
             FNFFP    FSAW                    Y PSSLGG ++DGQ+ F  +TLNKAP
Sbjct: 119  RFNFFPENPAFSAWGTSGSQGQQAQSSAYGNSYTYPPSSLGGTIVDGQTGFHGDTLNKAP 178

Query: 885  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 1064
            GMN+++QGM  LK+G  +V ++  K VGS V S ++T  I++ +      +   KP SWA
Sbjct: 179  GMNSLEQGMVGLKIG--DVTTSAVKTVGSVVSSVAMTG-ILSGNGGTNVPLPVSKPTSWA 235

Query: 1065 DIASKPAKQQPKLKTKNGIA-GSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQ 1241
             IASKPAK QPK+K K+G A G +LPPPPIKHNMDIGTWDNKGPV KAP+   V      
Sbjct: 236  AIASKPAKPQPKMKAKSGPAIGGALPPPPIKHNMDIGTWDNKGPVPKAPAPQQVPASSAA 295

Query: 1242 PTQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRG 1421
            P    PQP  Q   + PP+                               TRWVAPR+R 
Sbjct: 296  P---QPQPAMQPLPAQPPLPAPP-----------------QHTGPQQLPQTRWVAPRSRN 335

Query: 1422 SGFGHNGVDGNGVGQSQAGSG-----STPS-EPHPVLEKLRSINNYNPKDFDWNLKHGRV 1583
            + FG  G    G+G     SG     +TPS E HPVLEKL++ ++YNPK+FDWNLK GRV
Sbjct: 336  AAFGQTG----GLGSDSNSSGGAQPSTTPSAESHPVLEKLKAAHSYNPKEFDWNLKSGRV 391

Query: 1584 FIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAE 1763
            FIIKSYSEDD+HRSIKY++WCSTEHGN+RLD+A+R++  KGPVYLLFSVNGSGHFCGVAE
Sbjct: 392  FIIKSYSEDDVHRSIKYSLWCSTEHGNRRLDSAFRALGSKGPVYLLFSVNGSGHFCGVAE 451

Query: 1764 MKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEV 1943
            MKS VDY T AGVWSQDKWKG+FDV+WIFVKDVPNSQLRHIRLENN+NKPVTNSRDTQEV
Sbjct: 452  MKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNSQLRHIRLENNDNKPVTNSRDTQEV 511

Query: 1944 PLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            PLEKA+QVL+IIASY+H+TSIFDDFSHYE+RQEEEE V+KERQ R K
Sbjct: 512  PLEKARQVLRIIASYRHSTSIFDDFSHYERRQEEEEVVRKERQSRNK 558


>ref|NP_001178345.1| YTH domain family protein 1 [Bos taurus].
          Length = 561

 Score =  671 bits (1730), Expect = 0.0
 Identities = 348/589 (59%), Positives = 413/589 (70%), Gaps = 9/589 (1%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+  QR KGQ NKV  QNGS+HQKD ++D+DFEPYLS Q+  +N+Y +M       
Sbjct: 1    MSATSVDPQRTKGQDNKVSLQNGSLHQKDTVHDNDFEPYLSGQSNQSNSYPSMADPYLSS 60

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLG 698
                 IGF YSL EA WSTGGD  +PYLT+YGQLSNG+ HF+ DA+FGQPG LGS  +  
Sbjct: 61   YYPPSIGFPYSLNEAPWSTGGDPPIPYLTTYGQLSNGDHHFVHDAVFGQPGGLGSNIY-- 118

Query: 699  QHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNK 878
            QH FNFFP    FSAW                    Y PSSLGG ++DGQ+ F  +TLNK
Sbjct: 119  QHRFNFFPENPAFSAWGTSGSQGQQAQSSAYGNSYTYPPSSLGGTIVDGQTGFHGDTLNK 178

Query: 879  APGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPAS 1058
            APGMN+++QGM  LK+G  +V ++  K VGS V S ++T  I++ +      +   KP S
Sbjct: 179  APGMNSLEQGMVGLKIG--DVTTSAVKTVGSVVSSVAMTG-ILSGNGGTNVPLPVSKPTS 235

Query: 1059 WADIASKPAKQQPKLKTKNGIA-GSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIG 1235
            WA IASKPAK QPK+K K+G A G +LPPPPIKHNMDIGTWDNKGPV KAP+   V    
Sbjct: 236  WAAIASKPAKPQPKMKAKSGPAIGGALPPPPIKHNMDIGTWDNKGPVPKAPAPQQVPASS 295

Query: 1236 QQPTQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRN 1415
              P    PQP  Q   + PP+                               TRWVAPR+
Sbjct: 296  AAP---QPQPAMQPLPAQPPLPAPP-----------------QHTGPQQLPQTRWVAPRS 335

Query: 1416 RGSGFGHNGVDGNGVGQSQAGSG-----STPS-EPHPVLEKLRSINNYNPKDFDWNLKHG 1577
            R + FG  G    G+G     SG     +TPS E HPVLEKL++ ++YNPK+FDWNLK G
Sbjct: 336  RNAAFGQTG----GLGSDSNSSGGAQPSTTPSAESHPVLEKLKAAHSYNPKEFDWNLKSG 391

Query: 1578 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 1757
            RVFIIKSYSEDD+HRSIKY++WCSTEHGN+RLD+A+R++  KGPVYLLFSVNGSGHFCGV
Sbjct: 392  RVFIIKSYSEDDVHRSIKYSLWCSTEHGNRRLDSAFRALGSKGPVYLLFSVNGSGHFCGV 451

Query: 1758 AEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQ 1937
            AEMKS VDY T AGVWSQDKWKG+FDV+WIFVKDVPNSQLRHIRLENN+NKPVTNSRDTQ
Sbjct: 452  AEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNSQLRHIRLENNDNKPVTNSRDTQ 511

Query: 1938 EVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            EVPLEKA+QVL+IIASY+H+TSIFDDFSHYE+RQEEEE V+KERQ R K
Sbjct: 512  EVPLEKARQVLRIIASYRHSTSIFDDFSHYERRQEEEEVVRKERQSRNK 560


>ref|XP_002692452.1| PREDICTED: YTH domain family 1-like isoform 2 [Bos taurus].
          Length = 561

 Score =  671 bits (1730), Expect = 0.0
 Identities = 348/589 (59%), Positives = 413/589 (70%), Gaps = 9/589 (1%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+  QR KGQ NKV  QNGS+HQKD ++D+DFEPYLS Q+  +N+Y +M       
Sbjct: 1    MSATSVDPQRTKGQDNKVSLQNGSLHQKDTVHDNDFEPYLSGQSNQSNSYPSMADPYLSS 60

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLG 698
                 IGF YSL EA WSTGGD  +PYLT+YGQLSNG+ HF+ DA+FGQPG LGS  +  
Sbjct: 61   YYPPSIGFPYSLNEAPWSTGGDPPIPYLTTYGQLSNGDHHFVHDAVFGQPGGLGSNIY-- 118

Query: 699  QHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNK 878
            QH FNFFP    FSAW                    Y PSSLGG ++DGQ+ F  +TLNK
Sbjct: 119  QHRFNFFPENPAFSAWGTSGSQGQQAQSSAYGNSYTYPPSSLGGTIVDGQTGFHGDTLNK 178

Query: 879  APGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPAS 1058
            APGMN+++QGM  LK+G  +V ++  K VGS V S ++T  I++ +      +   KP S
Sbjct: 179  APGMNSLEQGMVGLKIG--DVTTSAVKTVGSVVSSVAMTG-ILSGNGGTNVPLPVSKPTS 235

Query: 1059 WADIASKPAKQQPKLKTKNGIA-GSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIG 1235
            WA IASKPAK QPK+K K+G A G +LPPPPIKHNMDIGTWDNKGPV KAP+   V    
Sbjct: 236  WAAIASKPAKPQPKMKAKSGPAIGGALPPPPIKHNMDIGTWDNKGPVPKAPAPQQVPASS 295

Query: 1236 QQPTQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRN 1415
              P    PQP  Q   + PP+                               TRWVAPR+
Sbjct: 296  AAP---QPQPAMQPLPAQPPLPAPP-----------------QHTGPQQLPQTRWVAPRS 335

Query: 1416 RGSGFGHNGVDGNGVGQSQAGSG-----STPS-EPHPVLEKLRSINNYNPKDFDWNLKHG 1577
            R + FG  G    G+G     SG     +TPS E HPVLEKL++ ++YNPK+FDWNLK G
Sbjct: 336  RNAAFGQTG----GLGSDSNSSGGAQPSTTPSAESHPVLEKLKAAHSYNPKEFDWNLKSG 391

Query: 1578 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 1757
            RVFIIKSYSEDD+HRSIKY++WCSTEHGN+RLD+A+R++  KGPVYLLFSVNGSGHFCGV
Sbjct: 392  RVFIIKSYSEDDVHRSIKYSLWCSTEHGNRRLDSAFRALGSKGPVYLLFSVNGSGHFCGV 451

Query: 1758 AEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQ 1937
            AEMKS VDY T AGVWSQDKWKG+FDV+WIFVKDVPNSQLRHIRLENN+NKPVTNSRDTQ
Sbjct: 452  AEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNSQLRHIRLENNDNKPVTNSRDTQ 511

Query: 1938 EVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            EVPLEKA+QVL+IIASY+H+TSIFDDFSHYE+RQEEEE V+KERQ R K
Sbjct: 512  EVPLEKARQVLRIIASYRHSTSIFDDFSHYERRQEEEEVVRKERQSRNK 560


>ref|NP_001039985.1| YTH domain-containing protein 1 [Bos taurus].
          Length = 717

 Score = 71.2 bits (173), Expect = 4e-12
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 6/192 (3%)
 Frame = +3

Query: 1410 RNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFI 1589
            R R  G      D +G   S++ +GS       +   +R++         + L+  R F+
Sbjct: 302  RKRARGISPIIFDRSGSSASESYAGSEKKH-EKLSSSVRAVRKDQTSKLKYVLQDARFFL 360

Query: 1590 IKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMK 1769
            IKS + +++  +    +W +     K+L+ A+RS      V L+FSV  SG F G A + 
Sbjct: 361  IKSNNHENVSLAKAKGVWSTLPVNEKKLNVAFRSARS---VILIFSVRESGKFQGFARLS 417

Query: 1770 SAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRD 1931
            S   +      W      S     G F + WI  +++P ++  H+    NE+KPV   RD
Sbjct: 418  SESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRD 477

Query: 1932 TQEVPLEKAKQV 1967
             QE+ LE   Q+
Sbjct: 478  GQEIELECGTQL 489


>ref|NP_001179740.1| probable ATP-dependent RNA helicase YTHDC2 [Bos taurus].
          Length = 1429

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 44/133 (33%), Positives = 68/133 (51%)
 Frame = +3

Query: 1578 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 1757
            R FI+KS +  ++  S +  IW +T    ++L+ A+   +    VYL+FSV GSGHF G 
Sbjct: 1288 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS---MVYLVFSVQGSGHFQGF 1344

Query: 1758 AEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQ 1937
            + M S +        W      G F V WI  + +P     H+    N+NK V  SRD Q
Sbjct: 1345 SRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQ 1403

Query: 1938 EVPLEKAKQVLKI 1976
            E+  +  +Q+L++
Sbjct: 1404 ELEPQVGEQLLQL 1416


>ref|XP_002690451.1| PREDICTED: YTH domain containing 2-like [Bos taurus].
          Length = 1429

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 44/133 (33%), Positives = 68/133 (51%)
 Frame = +3

Query: 1578 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 1757
            R FI+KS +  ++  S +  IW +T    ++L+ A+   +    VYL+FSV GSGHF G 
Sbjct: 1288 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS---MVYLVFSVQGSGHFQGF 1344

Query: 1758 AEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQ 1937
            + M S +        W      G F V WI  + +P     H+    N+NK V  SRD Q
Sbjct: 1345 SRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQ 1403

Query: 1938 EVPLEKAKQVLKI 1976
            E+  +  +Q+L++
Sbjct: 1404 ELEPQVGEQLLQL 1416


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 79,347,176
Number of extensions: 2097084
Number of successful extensions: 7982
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7865
Number of HSP's successfully gapped: 10
Length of query: 760
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 650
Effective length of database: 14,041,694
Effective search space: 9127101100
Effective search space used: 9127101100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012273
         (2281 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003356306.1| PREDICTED: YTH domain family protein 2-like ...  1056   0.0  
Alignment   gi|XP_003356307.1| PREDICTED: YTH domain family protein 2-like ...   957   0.0  
Alignment   gi|XP_003355098.1| PREDICTED: YTH domain family protein 3-like,...   436   e-122
Alignment   gi|XP_003355101.1| PREDICTED: YTH domain family protein 3-like ...   397   e-110
Alignment   gi|XP_003354291.1| PREDICTED: probable ATP-dependent RNA helica...    62   1e-09

>ref|XP_003356306.1| PREDICTED: YTH domain family protein 2-like isoform 1 [Sus scrofa].
          Length = 580

 Score = 1056 bits (2732), Expect = 0.0
 Identities = 524/580 (90%), Positives = 524/580 (90%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXX 524
            MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAM         
Sbjct: 1    MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY 60

Query: 525  XXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 704
               IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH
Sbjct: 61   SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 120

Query: 705  GFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAP 884
            GFNFFPSGIDFSAW                   AYAPSSLGGAMIDGQSAFASETLNKAP
Sbjct: 121  GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFASETLNKAP 180

Query: 885  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 1064
            GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA
Sbjct: 181  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 240

Query: 1065 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQP 1244
            DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQP
Sbjct: 241  DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQP 300

Query: 1245 TQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRGS 1424
            TQGSPQPVGQQATSSPPVAQASVG                         TRWVAPRNRGS
Sbjct: 301  TQGSPQPVGQQATSSPPVAQASVGQQTQPLPPPPPQPTQLSVQQQAAQPTRWVAPRNRGS 360

Query: 1425 GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS 1604
            GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS
Sbjct: 361  GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS 420

Query: 1605 EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY 1784
            EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY
Sbjct: 421  EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY 480

Query: 1785 NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ 1964
            NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ
Sbjct: 481  NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ 540

Query: 1965 VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK
Sbjct: 541  VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 580


>ref|XP_003356307.1| PREDICTED: YTH domain family protein 2-like isoform 2 [Sus scrofa].
          Length = 530

 Score =  957 bits (2475), Expect = 0.0
 Identities = 473/517 (91%), Positives = 473/517 (91%)
 Frame = +3

Query: 534  IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFN 713
            IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFN
Sbjct: 14   IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFN 73

Query: 714  FFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAPGMN 893
            FFPSGIDFSAW                   AYAPSSLGGAMIDGQSAFASETLNKAPGMN
Sbjct: 74   FFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFASETLNKAPGMN 133

Query: 894  TIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWADIA 1073
            TIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWADIA
Sbjct: 134  TIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWADIA 193

Query: 1074 SKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQPTQG 1253
            SKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQPTQG
Sbjct: 194  SKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQPTQG 253

Query: 1254 SPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRGSGFG 1433
            SPQPVGQQATSSPPVAQASVG                         TRWVAPRNRGSGFG
Sbjct: 254  SPQPVGQQATSSPPVAQASVGQQTQPLPPPPPQPTQLSVQQQAAQPTRWVAPRNRGSGFG 313

Query: 1434 HNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDD 1613
            HNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDD
Sbjct: 314  HNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDD 373

Query: 1614 IHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTC 1793
            IHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTC
Sbjct: 374  IHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTC 433

Query: 1794 AGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLK 1973
            AGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLK
Sbjct: 434  AGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLK 493

Query: 1974 IIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            IIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK
Sbjct: 494  IIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 530


>ref|XP_003355098.1| PREDICTED: YTH domain family protein 3-like, partial [Sus scrofa].
          Length = 434

 Score =  436 bits (1120), Expect = e-122
 Identities = 241/445 (54%), Positives = 285/445 (64%), Gaps = 16/445 (3%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   NN+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQNNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGST-PFL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+T PFL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F ++TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV-- 1223
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP    V  
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP 296

Query: 1224 -QNIGQQPTQ-GSPQPVGQ----QATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXX 1385
             Q I QQP     P P+ Q    Q    PP  Q   G                       
Sbjct: 297  PQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQG-------PQPQAQPHQVQPQQQQ 349

Query: 1386 XXTRWVAPRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVLEKLRSINNYNPKDF 1556
               RWVAPRNRG+GF  +NG  G   G       ++PS  E HPVLEKL++INNYNPKDF
Sbjct: 350  LQNRWVAPRNRGAGFNQNNGAGGENFGLGVVPVSASPSSVEVHPVLEKLKAINNYNPKDF 409

Query: 1557 DWNLKHGRVFIIKSYSEDDIHRSIK 1631
            DWNLK+GRVFIIKSYSEDDIHRSIK
Sbjct: 410  DWNLKNGRVFIIKSYSEDDIHRSIK 434


>ref|XP_003355101.1| PREDICTED: YTH domain family protein 3-like [Sus scrofa].
          Length = 499

 Score =  397 bits (1021), Expect = e-110
 Identities = 217/409 (53%), Positives = 257/409 (62%), Gaps = 14/409 (3%)
 Frame = +3

Query: 477  NNAYTAMXXXXXXXXXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAM 656
            NN+Y  M            IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +
Sbjct: 21   NNSYPPMSDPYMPSYYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGV 80

Query: 657  FGQPGALGSTP-FLGQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGA 833
            F QPGALG+TP FLGQHGFNFFP   DFS W                    Y PSSLG A
Sbjct: 81   FSQPGALGNTPPFLGQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRA 140

Query: 834  MIDGQSAFASETLNKAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVAS 1013
            + DGQ+ F ++TL+K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A+
Sbjct: 141  ITDGQAGFGNDTLSKVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IAT 197

Query: 1014 SSLPPATIAPPKPASWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNK 1187
            +S+PP + A PKP SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD K
Sbjct: 198  NSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEK 257

Query: 1188 GPVAKAPSQALV---QNIGQQPTQG-SPQPVGQ----QATSSPPVAQASVGXXXXXXXXX 1343
            G V KAP    V   Q I QQP     P P+ Q    Q    PP  Q   G         
Sbjct: 258  GSVVKAPPTQPVLPPQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQ 317

Query: 1344 XXXXXXXXXXXXXXXXTRWVAPRNRGSGFG-HNGVDGNGVGQSQAGSGSTPS--EPHPVL 1514
                             RWVAPRNRG+GF  +NG  G   G       ++PS  E HPVL
Sbjct: 318  VQPQQQQLQ-------NRWVAPRNRGAGFNQNNGAGGENFGLGVVPVSASPSSVEVHPVL 370

Query: 1515 EKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHG 1661
            EKL++INNYNPKDFDWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHG
Sbjct: 371  EKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHG 419


>ref|XP_003354291.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Sus
            scrofa].
          Length = 497

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 41/120 (34%), Positives = 59/120 (49%)
 Frame = +3

Query: 1578 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 1757
            R FI+KS +  ++  S +  IW +T    ++L+ A+   +    VYL+FSV GSGHF G 
Sbjct: 360  RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS---MVYLVFSVQGSGHFQGF 416

Query: 1758 AEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQ 1937
            + M S +        W      G F V WI  + +P     H+    N+NK V  SRD Q
Sbjct: 417  SRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQ 475


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,124,402
Number of extensions: 1346881
Number of successful extensions: 5135
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5048
Number of HSP's successfully gapped: 5
Length of query: 760
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 653
Effective length of database: 8,679,953
Effective search space: 5668009309
Effective search space used: 5668009309
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012273
         (2281 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_663368.3| YTH domain family protein 2 [Mus musculus].         1044   0.0  
Alignment   gi|NP_001139391.1| YTH domain family protein 3 isoform 2 [Mus m...   711   0.0  
Alignment   gi|NP_766265.3| YTH domain family protein 3 isoform 1 [Mus musc...   703   0.0  
Alignment   gi|NP_776122.1| YTH domain family protein 1 [Mus musculus].          685   0.0  
Alignment   gi|NP_808348.2| YTH domain containing 1 [Mus musculus].               71   3e-12
Alignment   gi|NP_001156485.1| probable ATP-dependent RNA helicase YTHDC2 [...    69   2e-11

>ref|NP_663368.3| YTH domain family protein 2 [Mus musculus].
          Length = 579

 Score = 1044 bits (2699), Expect = 0.0
 Identities = 519/580 (89%), Positives = 522/580 (90%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXX 524
            MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAM         
Sbjct: 1    MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY 60

Query: 525  XXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 704
               IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH
Sbjct: 61   SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 120

Query: 705  GFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAP 884
            GFNFFPSGIDFSAW                   AYAPSSLGGAMIDGQSAFA+ETLNKAP
Sbjct: 121  GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP 180

Query: 885  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 1064
            GMNTIDQGMAALKLGSTEVAS+VPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA
Sbjct: 181  GMNTIDQGMAALKLGSTEVASSVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 240

Query: 1065 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQP 1244
            DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQ P
Sbjct: 241  DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQ-P 299

Query: 1245 TQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRGS 1424
            TQGSPQPVGQQA +SPPVAQASVG                         TRWVAPRNRGS
Sbjct: 300  TQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGS 359

Query: 1425 GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS 1604
            GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS
Sbjct: 360  GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS 419

Query: 1605 EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY 1784
            EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY
Sbjct: 420  EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY 479

Query: 1785 NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ 1964
            NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ
Sbjct: 480  NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ 539

Query: 1965 VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK
Sbjct: 540  VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 579


>ref|NP_001139391.1| YTH domain family protein 3 isoform 2 [Mus musculus].
          Length = 585

 Score =  711 bits (1836), Expect = 0.0
 Identities = 369/595 (62%), Positives = 426/595 (71%), Gaps = 20/595 (3%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   NN+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQNNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F ++TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQNSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++++PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNNVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV-- 1223
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP    V  
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP 296

Query: 1224 -QNIGQQPTQG-SPQPVGQ----QATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXX 1385
             Q I QQP     P P+ Q    Q    PP  Q   G                       
Sbjct: 297  PQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQSQQPQLQ----- 351

Query: 1386 XXTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPS-------EPHPVLEKLRSINNYN 1544
               RWVAPRNRG+GF  N    NG G    G G  P        E HPVLEKL++INNYN
Sbjct: 352  --NRWVAPRNRGTGFNQN----NGTGSENFGLGVVPVSASPSSVEVHPVLEKLKAINNYN 405

Query: 1545 PKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLF 1724
            PKDFDWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLF
Sbjct: 406  PKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLF 465

Query: 1725 SVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNE 1904
            SVNGSGHFCGVAEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+
Sbjct: 466  SVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENND 525

Query: 1905 NKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            NKPVTNSRDTQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 526  NKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 580


>ref|NP_766265.3| YTH domain family protein 3 isoform 1 [Mus musculus].
          Length = 596

 Score =  703 bits (1814), Expect = 0.0
 Identities = 369/606 (60%), Positives = 426/606 (70%), Gaps = 31/606 (5%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARP-----------NNA 485
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q              NN+
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQKYRRAKQLFHCNNS 59

Query: 486  YTAMXXXXXXXXXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQ 665
            Y  M            IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F Q
Sbjct: 60   YPPMSDPYMPSYYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQ 119

Query: 666  PGALGSTP-FLGQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMID 842
            PGALG+TP FLGQHGFNFFP   DFS W                    Y PSSLG A+ D
Sbjct: 120  PGALGNTPPFLGQHGFNFFPGNADFSTWGTSGSQGQSTQNSAYSSSYGYPPSSLGRAITD 179

Query: 843  GQSAFASETLNKAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSL 1022
            GQ+ F ++TL+K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++++
Sbjct: 180  GQAGFGNDTLSKVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNNV 236

Query: 1023 PPATIAPPKPASWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPV 1196
            PP + A PKP SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V
Sbjct: 237  PPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSV 296

Query: 1197 AKAPSQALV---QNIGQQPTQG-SPQPVGQ----QATSSPPVAQASVGXXXXXXXXXXXX 1352
             KAP    V   Q I QQP     P P+ Q    Q    PP  Q   G            
Sbjct: 297  VKAPPTQPVLPPQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQS 356

Query: 1353 XXXXXXXXXXXXXTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPS-------EPHPV 1511
                          RWVAPRNRG+GF  N    NG G    G G  P        E HPV
Sbjct: 357  QQPQLQ-------NRWVAPRNRGTGFNQN----NGTGSENFGLGVVPVSASPSSVEVHPV 405

Query: 1512 LEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRS 1691
            LEKL++INNYNPKDFDWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS
Sbjct: 406  LEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRS 465

Query: 1692 MNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNS 1871
            +NGKGP+YLLFSVNGSGHFCGVAEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+
Sbjct: 466  LNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNN 525

Query: 1872 QLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEE 2051
            QLRHIRLENN+NKPVTNSRDTQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE
Sbjct: 526  QLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEE 585

Query: 2052 SVKKER 2069
            ++++ER
Sbjct: 586  AMRRER 591


>ref|NP_776122.1| YTH domain family protein 1 [Mus musculus].
          Length = 559

 Score =  685 bits (1767), Expect = 0.0
 Identities = 356/587 (60%), Positives = 413/587 (70%), Gaps = 7/587 (1%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXX 524
            MSA+S+  QR KGQ NKVQNGS+HQKD ++D+DFEPYLS Q+ P+N+Y +M         
Sbjct: 1    MSATSVDPQRTKGQDNKVQNGSLHQKDAVHDNDFEPYLSGQSNPSNSYPSMSDPYLSSYY 60

Query: 525  XXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 704
               IGF YSL EA WST GD  +PYLT+YGQLSNG+ HF+ DA+FGQPG LG+  +  QH
Sbjct: 61   PPSIGFPYSLSEAPWSTAGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGNNIY--QH 118

Query: 705  GFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAP 884
             FNFFP    FSAW                    Y PSSLGG ++DGQ+ F S++LNKAP
Sbjct: 119  RFNFFPENPAFSAWGTSGSQGQQTQSSAYGSSYTYPPSSLGGTVVDGQTGFHSDSLNKAP 178

Query: 885  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 1064
            GMN+++QGM  LK+G  +V ++  K VGS V S ++T  +++ +      +   KP SWA
Sbjct: 179  GMNSLEQGMVGLKIG--DVTTSAVKTVGSVVNSVALTG-VLSGNGGTNVNMPVSKPTSWA 235

Query: 1065 DIASKPAKQQPKLKTKNG-IAGSSLPPPPIKHNMDIGTWDNKGPVAKA--PSQALVQNIG 1235
             IASKPAK QPK+KTK+G I G +LPPPPIKHNMDIGTWDNKGP  KA  P Q       
Sbjct: 236  AIASKPAKPQPKMKTKSGPIVGGALPPPPIKHNMDIGTWDNKGPAPKASAPQQTPSPQAA 295

Query: 1236 QQPTQ-GSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPR 1412
             QP Q   P PV       PP+ Q                              RWVAPR
Sbjct: 296  PQPQQVAQPLPV-----QPPPLVQPQY------------------QSPQQPLQPRWVAPR 332

Query: 1413 NRGSGFGHNG---VDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRV 1583
            NR + FG +G    D N VG +Q  S  +  E HPVLEKL++ ++YNPK+FDWNLK GRV
Sbjct: 333  NRNAAFGQSGGANSDSNSVGNAQPTSAPSV-ESHPVLEKLKAAHSYNPKEFDWNLKSGRV 391

Query: 1584 FIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAE 1763
            FIIKSYSEDDIHRSIKY+IWCSTEHGNKRLD A+RSM+ KGPVYLLFSVNGSGHFCGVAE
Sbjct: 392  FIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSGHFCGVAE 451

Query: 1764 MKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEV 1943
            MKS VDY T AGVWSQDKWKG+FDV+WIFVKDVPN+QLRHIRLENN+NKPVTNSRDTQEV
Sbjct: 452  MKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEV 511

Query: 1944 PLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            PLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEE V+KERQ R K
Sbjct: 512  PLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEEVVRKERQNRNK 558


>ref|NP_808348.2| YTH domain containing 1 [Mus musculus].
          Length = 736

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 6/192 (3%)
 Frame = +3

Query: 1410 RNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFI 1589
            R R  G      D +G   S++ +GS       +   +R++         + L+  R F+
Sbjct: 302  RKRARGISPIVFDRSGSSASESYAGSEKKH-EKLSSSVRAVRKDQTSKLKYVLQDARFFL 360

Query: 1590 IKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMK 1769
            IKS + +++  +    +W +     K+L+ A+RS      V L+FSV  SG F G A + 
Sbjct: 361  IKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS---VILIFSVRESGKFQGFARLS 417

Query: 1770 SAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRD 1931
            S   +      W      S     G F + WI  +++P ++  H+    NE+KPV   RD
Sbjct: 418  SESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRD 477

Query: 1932 TQEVPLEKAKQV 1967
             QE+ LE   Q+
Sbjct: 478  GQEIELECGTQL 489


>ref|NP_001156485.1| probable ATP-dependent RNA helicase YTHDC2 [Mus musculus].
          Length = 1445

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 44/133 (33%), Positives = 68/133 (51%)
 Frame = +3

Query: 1578 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 1757
            R FI+KS +  ++  S +  IW +T    ++L+ A+   +    VYL+FSV GSGHF G 
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS---MVYLVFSVQGSGHFQGF 1360

Query: 1758 AEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQ 1937
            + M S +        W      G F V WI  + +P     H+    N+NK V  SRD Q
Sbjct: 1361 SRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQ 1419

Query: 1938 EVPLEKAKQVLKI 1976
            E+  +  +Q+L++
Sbjct: 1420 ELEPQVGEQLLQL 1432


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 69,116,894
Number of extensions: 1801504
Number of successful extensions: 6893
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6730
Number of HSP's successfully gapped: 6
Length of query: 760
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 651
Effective length of database: 12,343,635
Effective search space: 8035706385
Effective search space used: 8035706385
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012273
         (2281 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057342.2| YTH domain family protein 2 isoform 1 [Homo sap...  1045   0.0  
Alignment   gi|NP_001166599.1| YTH domain family protein 2 isoform 1 [Homo ...  1045   0.0  
Alignment   gi|NP_001166299.1| YTH domain family protein 2 isoform 2 [Homo ...   946   0.0  
Alignment   gi|NP_689971.4| YTH domain family protein 3 [Homo sapiens].          711   0.0  
Alignment   gi|NP_060268.2| YTH domain family protein 1 [Homo sapiens].          676   0.0  
Alignment   gi|NP_001026902.1| YTH domain-containing protein 1 isoform 1 [H...    71   4e-12
Alignment   gi|NP_073739.3| probable ATP-dependent RNA helicase YTHDC2 [Hom...    66   1e-10
Alignment   gi|NP_588611.2| YTH domain-containing protein 1 isoform 2 [Homo...    65   3e-10

>ref|NP_057342.2| YTH domain family protein 2 isoform 1 [Homo sapiens].
          Length = 579

 Score = 1045 bits (2701), Expect = 0.0
 Identities = 519/580 (89%), Positives = 522/580 (90%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXX 524
            MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAM         
Sbjct: 1    MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY 60

Query: 525  XXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 704
               IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH
Sbjct: 61   SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 120

Query: 705  GFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAP 884
            GFNFFPSGIDFSAW                   AYAPSSLGGAMIDGQSAFA+ETLNKAP
Sbjct: 121  GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP 180

Query: 885  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 1064
            GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVAS+SLPPATIAPPKPASWA
Sbjct: 181  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA 240

Query: 1065 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQP 1244
            DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQ P
Sbjct: 241  DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQ-P 299

Query: 1245 TQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRGS 1424
            TQGSPQPVGQQA +SPPVAQASVG                         TRWVAPRNRGS
Sbjct: 300  TQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGS 359

Query: 1425 GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS 1604
            GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS
Sbjct: 360  GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS 419

Query: 1605 EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY 1784
            EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY
Sbjct: 420  EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY 479

Query: 1785 NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ 1964
            NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ
Sbjct: 480  NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ 539

Query: 1965 VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK
Sbjct: 540  VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 579


>ref|NP_001166599.1| YTH domain family protein 2 isoform 1 [Homo sapiens].
          Length = 579

 Score = 1045 bits (2701), Expect = 0.0
 Identities = 519/580 (89%), Positives = 522/580 (90%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXX 524
            MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAM         
Sbjct: 1    MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY 60

Query: 525  XXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 704
               IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH
Sbjct: 61   SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 120

Query: 705  GFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAP 884
            GFNFFPSGIDFSAW                   AYAPSSLGGAMIDGQSAFA+ETLNKAP
Sbjct: 121  GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP 180

Query: 885  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 1064
            GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVAS+SLPPATIAPPKPASWA
Sbjct: 181  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA 240

Query: 1065 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQP 1244
            DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQ P
Sbjct: 241  DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQ-P 299

Query: 1245 TQGSPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRGS 1424
            TQGSPQPVGQQA +SPPVAQASVG                         TRWVAPRNRGS
Sbjct: 300  TQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGS 359

Query: 1425 GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS 1604
            GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS
Sbjct: 360  GFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYS 419

Query: 1605 EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY 1784
            EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY
Sbjct: 420  EDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDY 479

Query: 1785 NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ 1964
            NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ
Sbjct: 480  NTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQ 539

Query: 1965 VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK
Sbjct: 540  VLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 579


>ref|NP_001166299.1| YTH domain family protein 2 isoform 2 [Homo sapiens].
          Length = 529

 Score =  946 bits (2444), Expect = 0.0
 Identities = 468/517 (90%), Positives = 471/517 (91%)
 Frame = +3

Query: 534  IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFN 713
            IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFN
Sbjct: 14   IGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFN 73

Query: 714  FFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAPGMN 893
            FFPSGIDFSAW                   AYAPSSLGGAMIDGQSAFA+ETLNKAPGMN
Sbjct: 74   FFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAPGMN 133

Query: 894  TIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWADIA 1073
            TIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVAS+SLPPATIAPPKPASWADIA
Sbjct: 134  TIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIA 193

Query: 1074 SKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQPTQG 1253
            SKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQ PTQG
Sbjct: 194  SKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQ-PTQG 252

Query: 1254 SPQPVGQQATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNRGSGFG 1433
            SPQPVGQQA +SPPVAQASVG                         TRWVAPRNRGSGFG
Sbjct: 253  SPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSGFG 312

Query: 1434 HNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDD 1613
            HNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDD
Sbjct: 313  HNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDD 372

Query: 1614 IHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTC 1793
            IHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTC
Sbjct: 373  IHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTC 432

Query: 1794 AGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLK 1973
            AGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLK
Sbjct: 433  AGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLK 492

Query: 1974 IIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            IIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK
Sbjct: 493  IIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 529


>ref|NP_689971.4| YTH domain family protein 3 [Homo sapiens].
          Length = 585

 Score =  711 bits (1834), Expect = 0.0
 Identities = 369/595 (62%), Positives = 426/595 (71%), Gaps = 20/595 (3%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKV--QNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXX 518
            MSA+S+ +QRPKGQGNKV  QNGS+HQKD +NDDDFEPYLS Q   +N+Y  M       
Sbjct: 1    MSATSV-DQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPS 59

Query: 519  XXXXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTP-FL 695
                 IGF YSLGEAAWST GD  MPYLT+YGQ+SNGE H++PD +F QPGALG+TP FL
Sbjct: 60   YYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFL 119

Query: 696  GQHGFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLN 875
            GQHGFNFFP   DFS W                    Y PSSLG A+ DGQ+ F ++TL+
Sbjct: 120  GQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLS 179

Query: 876  KAPGMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPA 1055
            K PG+++I+QGM  LK+G  ++ + V K VG+A+ S  +TS  +A++S+PP + A PKP 
Sbjct: 180  KVPGISSIEQGMTGLKIGG-DLTAAVTKTVGTALSSSGMTS--IATNSVPPVSSAAPKPT 236

Query: 1056 SWADIASKPAKQQPKLKTKN--GIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALV-- 1223
            SWA IA KPAK QPKLK K   GI GS++PPPPIKHNM+IGTWD KG V KAP    V  
Sbjct: 237  SWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLP 296

Query: 1224 -QNIGQQPTQG-SPQPVGQ----QATSSPPVAQASVGXXXXXXXXXXXXXXXXXXXXXXX 1385
             Q I QQP     P P+ Q    Q    PP  Q   G                       
Sbjct: 297  PQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQ----- 351

Query: 1386 XXTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPS-------EPHPVLEKLRSINNYN 1544
               RWVAPRNRG+GF  N    NG G    G G  P        E HPVLEKL++INNYN
Sbjct: 352  --NRWVAPRNRGAGFNQN----NGAGSENFGLGVVPVSASPSSVEVHPVLEKLKAINNYN 405

Query: 1545 PKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLF 1724
            PKDFDWNLK+GRVFIIKSYSEDDIHRSIKY+IWCSTEHGNKRLDAAYRS+NGKGP+YLLF
Sbjct: 406  PKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLF 465

Query: 1725 SVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNE 1904
            SVNGSGHFCGVAEMKS VDYN  AGVWSQDKWKG+F+V+WIFVKDVPN+QLRHIRLENN+
Sbjct: 466  SVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENND 525

Query: 1905 NKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 2069
            NKPVTNSRDTQEVPLEKAKQVLKIIA++KHTTSIFDDF+HYEKRQEEEE++++ER
Sbjct: 526  NKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRER 580


>ref|NP_060268.2| YTH domain family protein 1 [Homo sapiens].
          Length = 559

 Score =  676 bits (1745), Expect = 0.0
 Identities = 350/585 (59%), Positives = 412/585 (70%), Gaps = 5/585 (0%)
 Frame = +3

Query: 345  MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMXXXXXXXXX 524
            MSA+S+  QR KGQ NKVQNGS+HQKD ++D+DFEPYL+ Q+  +N+Y +M         
Sbjct: 1    MSATSVDTQRTKGQDNKVQNGSLHQKDTVHDNDFEPYLTGQSNQSNSYPSMSDPYLSSYY 60

Query: 525  XXXIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 704
               IGF YSL EA WST GD  +PYLT+YGQLSNG+ HF+ DA+FGQPG LG+  +  QH
Sbjct: 61   PPSIGFPYSLNEAPWSTAGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGNNIY--QH 118

Query: 705  GFNFFPSGIDFSAWXXXXXXXXXXXXXXXXXXXAYAPSSLGGAMIDGQSAFASETLNKAP 884
             FNFFP    FSAW                    Y PSSLGG ++DGQ  F S+TL+KAP
Sbjct: 119  RFNFFPENPAFSAWGTSGSQGQQTQSSAYGSSYTYPPSSLGGTVVDGQPGFHSDTLSKAP 178

Query: 885  GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASSSLPPATIAPPKPASWA 1064
            GMN+++QGM  LK+G  +V+S+  K VGS V S ++T  +++ +      +   KP SWA
Sbjct: 179  GMNSLEQGMVGLKIG--DVSSSAVKTVGSVVSSVALTG-VLSGNGGTNVNMPVSKPTSWA 235

Query: 1065 DIASKPAKQQPKLKTKNG-IAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQQ 1241
             IASKPAK QPK+KTK+G + G  LPPPPIKHNMDIGTWDNKGPV KAP   + Q     
Sbjct: 236  AIASKPAKPQPKMKTKSGPVMGGGLPPPPIKHNMDIGTWDNKGPVPKAP---VPQQAPSP 292

Query: 1242 PTQGSPQPVGQQATSSPP-VAQASVGXXXXXXXXXXXXXXXXXXXXXXXXXTRWVAPRNR 1418
                 PQ V Q   + PP +AQ                             TRWVAPRNR
Sbjct: 293  QAAPQPQQVAQPLPAQPPALAQPQY------------------QSPQQPPQTRWVAPRNR 334

Query: 1419 GSGFGHNG---VDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFI 1589
             + FG +G    D N  G  Q  S  +  E HPVLEKL++ ++YNPK+F+WNLK GRVFI
Sbjct: 335  NAAFGQSGGAGSDSNSPGNVQPNSAPSV-ESHPVLEKLKAAHSYNPKEFEWNLKSGRVFI 393

Query: 1590 IKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMK 1769
            IKSYSEDDIHRSIKY+IWCSTEHGNKRLD+A+R M+ KGPVYLLFSVNGSGHFCGVAEMK
Sbjct: 394  IKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGHFCGVAEMK 453

Query: 1770 SAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPL 1949
            S VDY T AGVWSQDKWKG+FDV+WIFVKDVPN+QLRHIRLENN+NKPVTNSRDTQEVPL
Sbjct: 454  SPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPL 513

Query: 1950 EKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 2084
            EKAKQVLKII+SYKHTTSIFDDF+HYEKRQEEEE V+KERQ R K
Sbjct: 514  EKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQSRNK 558


>ref|NP_001026902.1| YTH domain-containing protein 1 isoform 1 [Homo sapiens].
          Length = 727

 Score = 71.2 bits (173), Expect = 4e-12
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 6/192 (3%)
 Frame = +3

Query: 1410 RNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFI 1589
            R R  G      D +G   S++ +GS       +   +R++         + L+  R F+
Sbjct: 301  RKRARGISPIVFDRSGSSASESYAGSEKKH-EKLSSSVRAVRKDQTSKLKYVLQDARFFL 359

Query: 1590 IKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMK 1769
            IKS + +++  +    +W +     K+L+ A+RS      V L+FSV  SG F G A + 
Sbjct: 360  IKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS---VILIFSVRESGKFQGFARLS 416

Query: 1770 SAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRD 1931
            S   +      W      S     G F + WI  +++P ++  H+    NE+KPV   RD
Sbjct: 417  SESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRD 476

Query: 1932 TQEVPLEKAKQV 1967
             QE+ LE   Q+
Sbjct: 477  GQEIELECGTQL 488


>ref|NP_073739.3| probable ATP-dependent RNA helicase YTHDC2 [Homo sapiens].
          Length = 1430

 Score = 66.2 bits (160), Expect = 1e-10
 Identities = 44/133 (33%), Positives = 67/133 (50%)
 Frame = +3

Query: 1578 RVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGV 1757
            R FI+KS +  ++  S +  IW +T    ++L+ A+   +    VYL+FSV GSGHF G 
Sbjct: 1289 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS---IVYLVFSVQGSGHFQGF 1345

Query: 1758 AEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQ 1937
            + M S +        W      G F V WI  + +P     H+    N+NK V  SRD Q
Sbjct: 1346 SRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQ 1404

Query: 1938 EVPLEKAKQVLKI 1976
            E+     +Q+L++
Sbjct: 1405 ELEPLVGEQLLQL 1417


>ref|NP_588611.2| YTH domain-containing protein 1 isoform 2 [Homo sapiens].
          Length = 709

 Score = 65.1 bits (157), Expect = 3e-10
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
 Frame = +3

Query: 1566 LKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGH 1745
            L+  R F+IKS + +++  +    +W +     K+L+ A+RS      V L+FSV  SG 
Sbjct: 334  LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS---VILIFSVRESGK 390

Query: 1746 FCGVAEMKSAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNEN 1907
            F G A + S   +      W      S     G F + WI  +++P ++  H+    NE+
Sbjct: 391  FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEH 450

Query: 1908 KPVTNSRDTQEVPLEKAKQV 1967
            KPV   RD QE+ LE   Q+
Sbjct: 451  KPVKIGRDGQEIELECGTQL 470


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 81,442,571
Number of extensions: 2140894
Number of successful extensions: 8111
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7963
Number of HSP's successfully gapped: 8
Length of query: 760
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 650
Effective length of database: 14,671,124
Effective search space: 9536230600
Effective search space used: 9536230600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012273
         (2281 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                        3148   0.0  
Sscrofa_Chr04                                                         103   4e-19

>Sscrofa_Chr06 
||          Length = 157765593

 Score = 3148 bits (1588), Expect = 0.0
 Identities = 1588/1588 (100%)
 Strand = Plus / Plus

                                                                            
Query: 477      aataatgcatatactgccatgtcagattcctacttacccagttactacagtccctccatt 536
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79558469 aataatgcatatactgccatgtcagattcctacttacccagttactacagtccctccatt 79558528

                                                                            
Query: 537      ggcttctcctattctttgggtgaagctgcttggtctactgggggtgatacagccatgccc 596
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79558529 ggcttctcctattctttgggtgaagctgcttggtctactgggggtgatacagccatgccc 79558588

                                                                            
Query: 597      tatctaacttcttatggacaactgagcaacggagagcctcacttcctaccagatgcaatg 656
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79558589 tatctaacttcttatggacaactgagcaacggagagcctcacttcctaccagatgcaatg 79558648

                                                                            
Query: 657      tttggacaaccaggagccctaggtagcactccatttcttggtcagcatggttttaatttc 716
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79558649 tttggacaaccaggagccctaggtagcactccatttcttggtcagcatggttttaatttc 79558708

                                                                            
Query: 717      tttcccagcgggattgacttctcagcttgggggaataatagttctcagggacagtctact 776
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79558709 tttcccagcgggattgacttctcagcttgggggaataatagttctcagggacagtctact 79558768

                                                                            
Query: 777      cagagctctggatatagtagtaattatgcttatgcacctagctccttaggtggagccatg 836
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79558769 cagagctctggatatagtagtaattatgcttatgcacctagctccttaggtggagccatg 79558828

                                                                            
Query: 837      attgatggacagtcagcttttgccagtgagaccctcaataaggctcctggcatgaatact 896
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79558829 attgatggacagtcagcttttgccagtgagaccctcaataaggctcctggcatgaatact 79558888

                                                                            
Query: 897      atagaccaagggatggcagcactaaagttgggtagcacagaagttgcaagcaatgttcca 956
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79558889 atagaccaagggatggcagcactaaagttgggtagcacagaagttgcaagcaatgttcca 79558948

                                                                            
Query: 957      aaagttgtaggctctgctgttggtagtgggtccattactagtaacattgtggcttccagt 1016
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79558949 aaagttgtaggctctgctgttggtagtgggtccattactagtaacattgtggcttccagt 79559008

                                                                            
Query: 1017     agtttgcctccagctacgattgctcctccaaaaccagcatcttgggctgatattgctagc 1076
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559009 agtttgcctccagctacgattgctcctccaaaaccagcatcttgggctgatattgctagc 79559068

                                                                            
Query: 1077     aagcctgcaaaacaacaacccaagttgaagaccaagaatggcattgcagggtcaagtctt 1136
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559069 aagcctgcaaaacaacaacccaagttgaagaccaagaatggcattgcagggtcaagtctt 79559128

                                                                            
Query: 1137     ccaccacccccaataaagcataacatggatattggaacttgggataacaagggtcctgtg 1196
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559129 ccaccacccccaataaagcataacatggatattggaacttgggataacaagggtcctgtg 79559188

                                                                            
Query: 1197     gcaaaagccccctcacaggctttggttcagaatataggtcagcagccaacccaggggtct 1256
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559189 gcaaaagccccctcacaggctttggttcagaatataggtcagcagccaacccaggggtct 79559248

                                                                            
Query: 1257     ccccagcctgtaggtcaacaggctaccagtagcccaccagtggctcaggcatcagtaggg 1316
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559249 ccccagcctgtaggtcaacaggctaccagtagcccaccagtggctcaggcatcagtaggg 79559308

                                                                            
Query: 1317     caacagacacagccattgcccccacctccaccacagcctactcagctctcagtgcagcaa 1376
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559309 caacagacacagccattgcccccacctccaccacagcctactcagctctcagtgcagcaa 79559368

                                                                            
Query: 1377     caggcagctcagccaacccgctgggtagcacctcggaaccgtggcagtgggttcggtcat 1436
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559369 caggcagctcagccaacccgctgggtagcacctcggaaccgtggcagtgggttcggtcat 79559428

                                                                            
Query: 1437     aatggggtggatggtaatggagtaggacagtctcaggctggatctggatctactccttca 1496
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559429 aatggggtggatggtaatggagtaggacagtctcaggctggatctggatctactccttca 79559488

                                                                            
Query: 1497     gaacctcacccagttttggagaagcttcggtccattaataactacaaccccaaggatttt 1556
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559489 gaacctcacccagttttggagaagcttcggtccattaataactacaaccccaaggatttt 79559548

                                                                            
Query: 1557     gactggaatctgaaacatggccgggttttcatcattaagagctactctgaggacgatatc 1616
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559549 gactggaatctgaaacatggccgggttttcatcattaagagctactctgaggacgatatc 79559608

                                                                            
Query: 1617     caccgttccattaagtataacatctggtgcagcacagagcatggtaacaagagactggat 1676
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559609 caccgttccattaagtataacatctggtgcagcacagagcatggtaacaagagactggat 79559668

                                                                            
Query: 1677     gctgcttatcgctccatgaacgggaagggccccgtttacttacttttcagtgtcaacggc 1736
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559669 gctgcttatcgctccatgaacgggaagggccccgtttacttacttttcagtgtcaacggc 79559728

                                                                            
Query: 1737     agtggacacttctgtggcgttgcagagatgaaatctgctgtggactacaacacatgtgca 1796
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559729 agtggacacttctgtggcgttgcagagatgaaatctgctgtggactacaacacatgtgca 79559788

                                                                            
Query: 1797     ggtgtatggtcccaggacaaatggaagggtcgttttgacgtcaggtggatttttgtgaag 1856
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559789 ggtgtatggtcccaggacaaatggaagggtcgttttgacgtcaggtggatttttgtgaag 79559848

                                                                            
Query: 1857     gacgttcccaatagccaactgcgacacattcgcctggagaacaacgagaataaaccagtg 1916
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559849 gacgttcccaatagccaactgcgacacattcgcctggagaacaacgagaataaaccagtg 79559908

                                                                            
Query: 1917     accaactccagggacactcaggaagtgcctctggaaaaggctaagcaggtgttgaaaatc 1976
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559909 accaactccagggacactcaggaagtgcctctggaaaaggctaagcaggtgttgaaaatc 79559968

                                                                            
Query: 1977     atagccagctacaagcataccacttccattttcgatgacttctcacactatgagaaacgc 2036
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79559969 atagccagctacaagcataccacttccattttcgatgacttctcacactatgagaaacgc 79560028

                                            
Query: 2037     caagaggaagaagagagtgttaaaaagg 2064
                ||||||||||||||||||||||||||||
Sbjct: 79560029 caagaggaagaagagagtgttaaaaagg 79560056



 Score =  486 bits (245), Expect = e-134
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        gtgcttcgcgcccggccccttccgcgtgggtgagtgaatgtgagagtcagcgtcgcgccg 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79553058 gtgcttcgcgcccggccccttccgcgtgggtgagtgaatgtgagagtcagcgtcgcgccg 79553117

                                                                            
Query: 61       cgcgcgccgtccgctttcgccgctcggcgcccttatttcggctgcgaggggcgggtgcgc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79553118 cgcgcgccgtccgctttcgccgctcggcgcccttatttcggctgcgaggggcgggtgcgc 79553177

                                                                            
Query: 121      gcgtcaaggcatagagacgggcgttgagttctcgggctagagcgtcgctgagtcggagcc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79553178 gcgtcaaggcatagagacgggcgttgagttctcgggctagagcgtcgctgagtcggagcc 79553237

                                                                            
Query: 181      ggagcccgagccgcgcgcggtgtctccgctgcgtccgccgaggcccccgagtgtcaggga 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79553238 ggagcccgagccgcgcgcggtgtctccgctgcgtccgccgaggcccccgagtgtcaggga 79553297

                     
Query: 241      caaaa 245
                |||||
Sbjct: 79553298 caaaa 79553302



 Score =  359 bits (181), Expect = 4e-96
 Identities = 195/202 (96%)
 Strand = Plus / Plus

                                                                            
Query: 2062     aggaacgtcaaggtcgtgggaaataaaaggcagttctgcacagactgcagcaacggttgc 2121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79582834 aggaacgtcaaggtcgtgggaaataaaaggcagttctgcacagactgcagcaacggttgc 79582893

                                                                            
Query: 2122     atctgcatatcctaagaggnnnnnnntgaccttcaagagaattaggacttttttcttaat 2181
                |||||||||||||||||||       ||||||||||||||||||||||||||||||||||
Sbjct: 79582894 atctgcatatcctaagaggaaaaaaatgaccttcaagagaattaggacttttttcttaat 79582953

                                                                            
Query: 2182     ttcattgacttcagagacgattgcagacttgcagtttaagtattggaatttcacaaaaga 2241
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79582954 ttcattgacttcagagacgattgcagacttgcagtttaagtattggaatttcacaaaaga 79583013

                                      
Query: 2242     cataggactaaactggaaaacg 2263
                ||||||||||||||||||||||
Sbjct: 79583014 cataggactaaactggaaaacg 79583035



 Score =  163 bits (82), Expect = 5e-37
 Identities = 82/82 (100%)
 Strand = Plus / Plus

                                                                            
Query: 395      agtgcaaaatggatctgtacatcaaaaggatggattaaatgatgatgattttgaacctta 454
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79554505 agtgcaaaatggatctgtacatcaaaaggatggattaaatgatgatgattttgaacctta 79554564

                                      
Query: 455      cttgagtccacaggcaaggccc 476
                ||||||||||||||||||||||
Sbjct: 79554565 cttgagtccacaggcaaggccc 79554586



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                           
Query: 329      ggaggatccgagagccatgtcggccagcagcctcttggagcag 371
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79553386 ggaggatccgagagccatgtcggccagcagcctcttggagcag 79553428


>Sscrofa_Chr04 
||          Length = 143465943

 Score =  103 bits (52), Expect = 4e-19
 Identities = 298/380 (78%)
 Strand = Plus / Minus

                                                                            
Query: 1638     atctggtgcagcacagagcatggtaacaagagactggatgctgcttatcgctccatgaac 1697
                |||||||| || || ||||||||||| ||| |  ||||||| ||||| || ||| |||| 
Sbjct: 77255664 atctggtgtagtactgagcatggtaataagcgtttggatgcagcttaccgttccctgaat 77255605

                                                                            
Query: 1698     gggaagggccccgtttacttacttttcagtgtcaacggcagtggacacttctgtggcgtt 1757
                ||||| |||||  | || || || |||||||| || ||||||||||| || ||||| || 
Sbjct: 77255604 gggaaaggcccactctatttgctcttcagtgtgaatggcagtggacatttttgtggagtg 77255545

                                                                            
Query: 1758     gcagagatgaaatctgctgtggactacaacacatgtgcaggtgtatggtcccaggacaaa 1817
                || |||||||| |||| ||||||||| ||  ||| ||| ||||| ||||| ||||| || 
Sbjct: 77255544 gctgagatgaagtctgttgtggactataatgcatatgctggtgtctggtctcaggataag 77255485

                                                                            
Query: 1818     tggaagggtcgttttgacgtcaggtggatttttgtgaaggacgttcccaatagccaactg 1877
                ||||||||    ||||| || |  ||||| ||||| || || |||||||||| |||| ||
Sbjct: 77255484 tggaagggcaaatttgaagttaaatggatctttgtcaaagatgttcccaataaccaattg 77255425

                                                                            
Query: 1878     cgacacattcgcctggagaacaacgagaataaaccagtgaccaactccagggacactcag 1937
                || || |||||| | || || || || || |||||||| ||||| || ||||||||||| 
Sbjct: 77255424 cggcatattcgcttagaaaataatgacaacaaaccagttaccaattcaagggacactcaa 77255365

                                                                            
Query: 1938     gaagtgcctctggaaaaggctaagcaggtgttgaaaatcatagccagctacaagcatacc 1997
                || || || || ||||| |||||||| ||| | ||||| || || |  | ||||||||||
Sbjct: 77255364 gaggtacccctagaaaaagctaagcaagtgcttaaaataattgctactttcaagcatacc 77255305

                                    
Query: 1998     acttccattttcgatgactt 2017
                || || || || ||||||||
Sbjct: 77255304 acctcaatctttgatgactt 77255285


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 61,766,031
Number of extensions: 391
Number of successful extensions: 391
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 6
Length of query: 2281
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2259
Effective length of database: 2,808,408,574
Effective search space: 6344194968666
Effective search space used: 6344194968666
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)