Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012280
(1390 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850307.1| PREDICTED: similar to Ficolin-1 precursor (Coll... 405 e-113
Alignment gi|XP_548412.2| PREDICTED: similar to fibrinogen C domain conta... 227 2e-59
Alignment gi|XP_546650.2| PREDICTED: similar to microfibrillar-associated... 217 2e-56
Alignment gi|XP_861119.1| PREDICTED: similar to tenascin R (restrictin, j... 201 2e-51
Alignment gi|XP_547454.2| PREDICTED: similar to tenascin R (restrictin, j... 201 2e-51
Alignment gi|NP_001182078.1| tenascin [Canis lupus familiaris]. 198 9e-51
Alignment gi|XP_547455.2| PREDICTED: similar to tenascin N [Canis familia... 194 1e-49
Alignment gi|XP_852356.1| PREDICTED: similar to angiopoietin-like 7 [Cani... 186 5e-47
Alignment gi|XP_863057.1| PREDICTED: similar to Angiopoietin-related prot... 183 4e-46
Alignment gi|XP_537840.2| PREDICTED: similar to Angiopoietin-related prot... 183 4e-46
>ref|XP_850307.1| PREDICTED: similar to Ficolin-1 precursor (Collagen/fibrinogen
domain-containing protein 1) (Ficolin-A) (Ficolin A)
(M-Ficolin) [Canis familiaris].
Length = 322
Score = 405 bits (1041), Expect = e-113
Identities = 197/318 (61%), Positives = 221/318 (69%)
Frame = +1
Query: 271 RGVAAAMRPLVLLVAFLCTAAPALDTCPEVKVVGLEGSDKLSILRXXXXXXXXXXXXXXX 450
RG AA ++ + A LCT A DTCPE KV+ LEGS KL+ILR
Sbjct: 3 RGGLAAGPAVLAVTALLCTVASTEDTCPEAKVLDLEGSGKLTILRGCPGLPGAVGSKGDA 62
Query: 451 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWEPEQCLTGPRTCKELLTRGH 630
P+ C T PRTC+ELLTRG
Sbjct: 63 GVDGARGAPGPPGVPGKAGPPGPKGNQGERGVQGQKGEPGSPQSCNTAPRTCRELLTRGT 122
Query: 631 FLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQLGEF 810
FLSGWHTIYLPDC+PLTVLCDMDTD GGWTVFQRR+DGSVDF+RDWA+YK+GFGSQLGEF
Sbjct: 123 FLSGWHTIYLPDCRPLTVLCDMDTDSGGWTVFQRRTDGSVDFFRDWASYKQGFGSQLGEF 182
Query: 811 WLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKYMLVLGAFVEGNAGD 990
WLGN++IHALTAQGT+ELRVDL+DFEGNHQFAKY SF+VAGEAEKY LVLGAFVEG+AGD
Sbjct: 183 WLGNENIHALTAQGTSELRVDLMDFEGNHQFAKYTSFKVAGEAEKYRLVLGAFVEGSAGD 242
Query: 991 SLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRYLGGSHGSFANGVNW 1170
SL+ HN F+TKDQDND NCA Y+G WWY CH+SNLNG YL G H SFANGVNW
Sbjct: 243 SLSYHNTQPFSTKDQDNDSTTENCAERYKGGWWYSKCHLSNLNGLYLRGPHDSFANGVNW 302
Query: 1171 SSGKGYNYSYKVSEMKFR 1224
+G+GYNYSYKVSEMK R
Sbjct: 303 KTGRGYNYSYKVSEMKLR 320
>ref|XP_548412.2| PREDICTED: similar to fibrinogen C domain containing 1 [Canis
familiaris].
Length = 461
Score = 227 bits (579), Expect = 2e-59
Identities = 114/230 (49%), Positives = 146/230 (63%), Gaps = 9/230 (3%)
Frame = +1
Query: 574 PEQCLTG--PRTCKELLTRGHFLSGWHTIYLPDCQP--LTVLCDMDTDGGGWTVFQRRSD 741
P C +G PR C ++L G G ++++ P P V CDM TDGGGWTVFQRR D
Sbjct: 232 PRGCTSGSPPRDCLDVLLSGQQEDGIYSVF-PTHYPAGFQVYCDMRTDGGGWTVFQRRED 290
Query: 742 GSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSF 921
GSV+F+R W AY+ GFG GE WLG +HALT Q T EL VDL DF+ + +A+Y SF
Sbjct: 291 GSVNFFRGWEAYRDGFGKLTGEHWLGLRRLHALTTQATYELHVDLEDFDNSTAYARYGSF 350
Query: 922 QVA-----GEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAW 1086
V E + Y L + + G AGDSL H+ FTT+D+D+D +NCA Y+GAW
Sbjct: 351 GVGLFSVDPEEDGYPLTVADY-SGTAGDSLLKHSGMKFTTRDRDSDHSENNCAAFYRGAW 409
Query: 1087 WYKSCHVSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFRAT*G 1236
WY++CH SNLNG+YL G+H S+A+G+ WSS G+ YS K SEMK R G
Sbjct: 410 WYRNCHTSNLNGQYLRGAHASYADGIEWSSWTGWQYSLKFSEMKIRPVRG 459
>ref|XP_546650.2| PREDICTED: similar to microfibrillar-associated protein 4 [Canis
familiaris].
Length = 254
Score = 217 bits (553), Expect = 2e-56
Identities = 107/220 (48%), Positives = 139/220 (63%), Gaps = 6/220 (2%)
Frame = +1
Query: 583 CLTGPRTCKELLTRGHFLSGWHTIYLPDCQ-PLTVLCDMDTDGGGWTVFQRRSDGSVDFY 759
CL P C ++ +G+ + G + IY P+ V CDM T GG WTVFQ+R +GSV F+
Sbjct: 33 CLPQPLDCDDVYAQGYQVDGVYLIYPSGPSVPVPVFCDMTTAGGKWTVFQKRFNGSVSFF 92
Query: 760 RDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQ----- 924
R W YK GFG GE+WLG ++H LT + ELRVDL DFE N AKY F
Sbjct: 93 RGWNDYKLGFGRADGEYWLGLQNLHLLTLKQKYELRVDLEDFENNTASAKYAEFSISPNA 152
Query: 925 VAGEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCH 1104
V+ E + Y L + F +G AGDSL+ H+ F+T D+D D + NCA L GA+W++SCH
Sbjct: 153 VSAEEDGYTLYVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCH 212
Query: 1105 VSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+NLNG YLGGSH S+ANG+NW+ KG+ YS K +EMK R
Sbjct: 213 FANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTEMKIR 252
>ref|XP_861119.1| PREDICTED: similar to tenascin R (restrictin, janusin) isoform 2
[Canis familiaris].
Length = 1364
Score = 201 bits (510), Expect = 2e-51
Identities = 103/212 (48%), Positives = 132/212 (62%), Gaps = 2/212 (0%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P+ C + L G LSG +TI+L + L V CDM TDGGGW VFQRR +G DF+R W
Sbjct: 1141 PQDCAQHLMNGDTLSGVYTIFLNGELSRKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKW 1200
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
A Y+ GFG+ EFWLG D+IH +T+QG ELRVD+ D + FA Y F V Y
Sbjct: 1201 AEYRVGFGNLEDEFWLGLDNIHRITSQGRYELRVDMRDGQ-EAAFAYYDKFSVEDARSLY 1259
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L LG + G AGDSL+ H F+T+D+DND +NCA+ Y+GAWWYK+CH +NLNG+Y
Sbjct: 1260 KLRLGGY-NGTAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKY 1318
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
H + G+NW KG+ +S EMK R
Sbjct: 1319 GESRH---SQGINWYHWKGHEFSIPFVEMKMR 1347
>ref|XP_547454.2| PREDICTED: similar to tenascin R (restrictin, janusin) isoform 1
[Canis familiaris].
Length = 1358
Score = 201 bits (510), Expect = 2e-51
Identities = 103/212 (48%), Positives = 132/212 (62%), Gaps = 2/212 (0%)
Frame = +1
Query
Animal-Genome cDNA 20110601C-012280
Animal-Genome cDNA 20110601C-012280
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012280
(1390 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001010996.1| ficolin-2 precursor [Bos taurus]. 410 e-114
Alignment gi|XP_002707737.1| PREDICTED: microfibrillar-associated protein... 226 3e-59
Alignment gi|NP_001073686.1| microfibril-associated glycoprotein 4 precur... 222 5e-58
Alignment gi|NP_001192857.1| tenascin-R [Bos taurus]. 202 4e-52
Alignment gi|XP_002694201.1| PREDICTED: tenascin R (restrictin, janusin)-... 202 4e-52
Alignment gi|NP_001192770.1| tenascin-N [Bos taurus]. 192 5e-49
Alignment gi|XP_002694199.1| PREDICTED: tenascin-R-like [Bos taurus]. 192 5e-49
Alignment gi|NP_001014909.1| angiopoietin-related protein 7 precursor [Bo... 191 1e-48
Alignment gi|NP_777128.1| tenascin-X [Bos taurus]. 191 1e-48
Alignment gi|NP_001071494.1| tenascin C [Bos taurus]. 189 7e-48
>ref|NP_001010996.1| ficolin-2 precursor [Bos taurus].
Length = 329
Score = 410 bits (1055), Expect = e-114
Identities = 207/329 (62%), Positives = 227/329 (68%), Gaps = 6/329 (1%)
Frame = +1
Query: 262 MDTRGVAAAMRPLVLLVAFLC---TAAPALDTCPEVKVVGLEGSDKLSILRXXXXXXXXX 432
M+ G A A+ P L+ LC AA A DTCPEVK+VGLEGSDKLSILR
Sbjct: 1 MELGGAAGALGPSGPLLVCLCFGTLAAQAADTCPEVKLVGLEGSDKLSILRGCPGLPGAP 60
Query: 433 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWEPEQ---CLTGPRT 603
E Q C TGPRT
Sbjct: 61 GLKGETGAAGLKGERGLPGVPGKAGPAGPKGSTGAQGEKGARGEKGESGQLHSCATGPRT 120
Query: 604 CKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKR 783
C ELLTRGHFLSGWHTIYLPDC+PLTVLCDMDTDGGGWTVFQRR DGSVDF+R W AYK+
Sbjct: 121 CTELLTRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRKDGSVDFFRTWTAYKQ 180
Query: 784 GFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKYMLVLG 963
GFGSQLGEFWLGND+IHALTAQGT+ELRVDL+DFEGNH+FAKY+SF++A EAEKY LVLG
Sbjct: 181 GFGSQLGEFWLGNDNIHALTAQGTSELRVDLMDFEGNHRFAKYQSFRMADEAEKYKLVLG 240
Query: 964 AFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRYLGGSH 1143
AFVEGNAGDSLT H N F+TKD+DND+ SNCA +QGAWWY SCH SNLNGRYL G H
Sbjct: 241 AFVEGNAGDSLTDHGNHFFSTKDRDNDESPSNCAAQFQGAWWYHSCHSSNLNGRYLRGPH 300
Query: 1144 GSFANGVNWSSGKGYNYSYKVSEMKFRAT 1230
S+ANG+NW S YNYSYKVSEMK R T
Sbjct: 301 TSYANGINWKSWGRYNYSYKVSEMKLRLT 329
>ref|XP_002707737.1| PREDICTED: microfibrillar-associated protein 4-like [Bos taurus].
Length = 625
Score = 226 bits (577), Expect = 3e-59
Identities = 124/278 (44%), Positives = 153/278 (55%), Gaps = 9/278 (3%)
Frame = +1
Query: 574 PEQCLTG--PRTCKELLTRGHFLSGWHTIYLPDCQP--LTVLCDMDTDGGGWTVFQRRSD 741
P C G PR C ++L G G ++++ P P V CDM TDGGGWTVFQRR D
Sbjct: 232 PRGCANGSRPRDCLDVLLSGQQEDGVYSVF-PTHDPAGFQVYCDMRTDGGGWTVFQRRED 290
Query: 742 GSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSF 921
GSV+F+R W AY+ GFG GE WLG IHALT Q EL VDL DF+ +A Y SF
Sbjct: 291 GSVNFFRGWEAYRDGFGKLTGEHWLGLKRIHALTTQAAYELHVDLEDFDNGTAYAHYGSF 350
Query: 922 QVA-----GEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAW 1086
V E + Y L + + G AGDSL H+ FTTKD+D+D +NCA Y+GAW
Sbjct: 351 GVGLFSVDPEEDGYPLTVADY-SGTAGDSLLKHSGMKFTTKDRDSDHSENNCAAFYRGAW 409
Query: 1087 WYKSCHVSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFRAT*GGTVLPEPSLR 1266
WY++CH SNLNG+YL G+H S+A+GV WSS G+ YS K SEMK R
Sbjct: 410 WYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQYSLKXSEMKIRPV------------ 457
Query: 1267 RGHGAPAHYPPGCGRATSQPLGGGHALCTATSFQSSVP 1380
H P+H PL HAL + + P
Sbjct: 458 -SHAPPSHCSTKITPLAPPPL--SHALAPPPAVTTPTP 492
>ref|NP_001073686.1| microfibril-associated glycoprotein 4 precursor [Bos taurus].
Length = 255
Score = 222 bits (566), Expect = 5e-58
Identities = 109/222 (49%), Positives = 141/222 (63%), Gaps = 6/222 (2%)
Frame = +1
Query: 577 EQCLTGPRTCKELLTRGHFLSGWHTIYLPDCQ-PLTVLCDMDTDGGGWTVFQRRSDGSVD 753
+ CL P C ++ +G+ G + IY P+ V CDM T+GG WTVFQ+R +GSV
Sbjct: 32 KSCLQLPLDCDDIYAQGYQADGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVS 91
Query: 754 FYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQ--- 924
F+R W YK GFG GE+WLG ++H LT + ELRVDL DFE N FAKY F
Sbjct: 92 FFRGWNDYKLGFGRADGEYWLGLQNMHLLTLKQKYELRVDLEDFENNTAFAKYADFSISP 151
Query: 925 --VAGEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKS 1098
V+ E + Y L + F +G AGDSLT H+ F+T D+D D + NCA L GA+W++S
Sbjct: 152 NAVSAEEDGYTLYVSGFEDGGAGDSLTYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRS 211
Query: 1099 CHVSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
CH +NLNG YLGGSH S+ANG+NW+ KG+ YS K +EMK R
Sbjct: 212 CHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTEMKIR 253
>ref|NP_001192857.1| tenascin-R [Bos taurus].
Length = 1358
Score = 202 bits (515), Expect = 4e-52
Identities = 104/212 (49%), Positives = 132/212 (62%), Gaps = 2/212 (0%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P+ C + L G LSG +TI+L Q L V CDM TDGGGW VFQRR +G DF+R W
Sbjct: 1135 PQDCAQHLMNGDTLSGVYTIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKW 1194
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
A Y+ GFG+ EFWLG D+IH +T+QG ELRVD+ D + FA Y F V Y
Sbjct: 1195 AEYRVGFGNLEDEFWLGLDNIHRITSQGRYELRVDMRDGQ-ETAFASYDRFSVEDNRSLY 1253
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L LG + G AGDSL+ H F+T+D+DND +NCA+ Y+GAWWYK+CH +NLNG+Y
Sbjct: 1254 KLRLGGY-NGTAGDSLSYHQGRPFSTEDRDNDIAVTNCAMSYKGAWWYKNCHRTNLNGKY 1312
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
H + G+NW KG+ +S EMK R
Sbjct: 1313 GESRH---SQGINWYHWKGHEFSIPFVEMKMR 1341
>ref|XP_002694201.1| PREDICTED: tenascin R (restrictin, janusin)-like [Bos taurus].
Length: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P+ C + L G LSG +TI+L + L V CDM TDGGGW VFQRR +G DF+R W
Sbjct: 1135 PQDCAQHLMNGDTLSGVYTIFLNGELSRKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKW 1194
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
A Y+ GFG+ EFWLG D+IH +T+QG ELRVD+ D + FA Y F V Y
Sbjct: 1195 AEYRVGFGNLEDEFWLGLDNIHRITSQGRYELRVDMRDGQ-EAAFAYYDKFSVEDARSLY 1253
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L LG + G AGDSL+ H F+T+D+DND +NCA+ Y+GAWWYK+CH +NLNG+Y
Sbjct: 1254 KLRLGGY-NGTAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKY 1312
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
H + G+NW KG+ +S EMK R
Sbjct: 1313 GESRH---SQGINWYHWKGHEFSIPFVEMKMR 1341
>ref|NP_001182078.1| tenascin [Canis lupus familiaris].
Length = 2201
Score = 198 bits (504), Expect = 9e-51
Identities = 102/212 (48%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYL--PDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
PR C + + G SG +TIYL Q L V CDM +DGGGW VF RR +G DFYR+W
Sbjct: 1981 PRDCSQAMLNGDTTSGLYTIYLNGDKAQALEVYCDMTSDGGGWIVFLRRKNGREDFYRNW 2040
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
AY GFG + EFWLG D++H +TAQG ELRVDL D G +A Y F V +Y
Sbjct: 2041 KAYAAGFGDRREEFWLGLDNLHKITAQGQYELRVDLRD-HGKTAYAVYDRFSVGDAKTRY 2099
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L + + G AGDS+ HN F+T D+D D +NCA+ Y+GA+WYK+CH NL GRY
Sbjct: 2100 KLKVEGY-SGTAGDSMAYHNGRSFSTFDKDTDSAITNCALSYKGAFWYKNCHRVNLMGRY 2158
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+H + GVNW KG+ YS + +EMK R
Sbjct: 2159 GDNNH---SQGVNWFHWKGHEYSIQFAEMKLR 2187
>ref|XP_547455.2| PREDICTED: similar to tenascin N [Canis familiaris].
Length = 1265
Score = 194 bits (494), Expect = 1e-49
Identities = 102/215 (47%), Positives = 130/215 (60%), Gaps = 5/215 (2%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P C ++ + +SG +TIYL +PL V CDMDTDGGGW VFQRR+ G +DF++ W
Sbjct: 1033 PSDCSQVQQNSNVVSGLYTIYLHGDASRPLQVYCDMDTDGGGWIVFQRRNTGQLDFFKRW 1092
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGT---NELRVDLVDFEGNHQFAKYRSFQVAGEA 939
Y GFG + EFWLG D +H LT GT E+RVDL +A Y FQVA
Sbjct: 1093 RTYVEGFGDPMKEFWLGLDKLHNLTT-GTPTRYEVRVDL-QTANESAYAVYDLFQVASSK 1150
Query: 940 EKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLN 1119
E+Y L +G + G AGD+LT HN FTT D+DND SNCA+ + G WWYK+CH++N N
Sbjct: 1151 ERYRLTVGKY-RGTAGDALTYHNGWKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPN 1209
Query: 1120 GRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
GRY H + GVNW KG+ +S E+K R
Sbjct: 1210 GRYGETKH---SEGVNWEPWKGHEFSIPYVELKIR 1241
>ref|XP_852356.1| PREDICTED: similar to angiopoietin-like 7 [Canis familiaris].
Length = 344
Score = 186 bits (472), Expect = 5e-47
Identities = 96/212 (45%), Positives = 127/212 (59%), Gaps = 5/212 (2%)
Frame = +1
Query: 604 CKELLTRGHFLSGWHTIYLPD---CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAA 774
C L + + +SG + + D L V CDM+T GGGWT+ QRR G V FYRDW
Sbjct: 129 CSSLYQKNYRISGVYKLPPDDFLGSPELEVFCDMETAGGGWTIIQRRKSGLVSFYRDWKQ 188
Query: 775 YKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKYML 954
YK+GFGS G+FWLGN+HIH L+ + T LRV++ D+EG+ ++A+Y F + E Y L
Sbjct: 189 YKQGFGSIRGDFWLGNEHIHRLSRRPT-RLRVEMEDWEGSVRYAEYSRFVLGNELNSYRL 247
Query: 955 VLGAFVEGNAG-DSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRYL 1131
LG + GN G D+L HNN+ F+TKD+DND CA L +G +WY C SNLNG Y
Sbjct: 248 FLGNY-SGNVGNDALLYHNNTAFSTKDKDNDNCLDKCAQLRKGGYWYNCCTDSNLNGVYY 306
Query: 1132 G-GSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
G H +G+ W G +YS + EMK R
Sbjct: 307 RLGEHNKHLDGITWYGWHGSSYSLRRVEMKIR 338
>ref|XP_863057.1| PREDICTED: similar to Angiopoietin-related protein 2 precursor
(Angiopoietin-like 2) isoform 4 [Canis familiaris].
Length = 501
Score = 183 bits (464), Expect = 4e-46
Identities = 98/216 (45%), Positives = 130/216 (60%), Gaps = 4/216 (1%)
Frame = +1
Query: 589 TGP-RTCKELLTRGHFLSGWHTIYLPDCQPLT-VLCDMDTDGGGWTVFQRRSDGSVDFYR 762
+GP R C + L GH S + + + L V CD D GGWTV QRR DGSV+F+R
Sbjct: 280 SGPWRDCLQALEDGHDTSSIYLVKPENTNRLMQVWCDQRHDPGGWTVIQRRLDGSVNFFR 339
Query: 763 DWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAE 942
+W YK+GFG+ GE+WLG ++I+ LT QG +L V + D+ G FA+Y SF++ E+E
Sbjct: 340 NWETYKQGFGNIDGEYWLGLENIYWLTNQGNYKLLVTMEDWSGRKVFAEYASFRLEPESE 399
Query: 943 KYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNG 1122
Y L LG + GNAGDS T HN FTT D+D+D Y NCA +G WWY +C SNLNG
Sbjct: 400 YYKLRLGRY-HGNAGDSFTWHNGKQFTTLDRDHDVYTGNCAHYQKGGWWYNACAHSNLNG 458
Query: 1123 RYLGGSH--GSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+ G H + +GV W+ +G +YS K M R
Sbjct: 459 VWYRGGHYRSRYQDGVYWAEFRGGSYSLKKVVMMIR 494
>ref|XP_537840.2| PREDICTED: similar to Angiopoietin-related protein 2 precursor
(Angiopoietin-like 2) isoform 1 [Canis familiaris].
Length = 493
Score = 183 bits (464), Expect = 4e-46
Identities = 98/216 (45%), Positives = 130/216 (60%), Gaps = 4/216 (1%)
Frame = +1
Query: 589 TGP-RTCKELLTRGHFLSGWHTIYLPDCQPLT-VLCDMDTDGGGWTVFQRRSDGSVDFYR 762
+GP R C + L GH S + + + L V CD D GGWTV QRR DGSV+F+R
Sbjct: 272 SGPWRDCLQALEDGHDTSSIYLVKPENTNRLMQVWCDQRHDPGGWTVIQRRLDGSVNFFR 331
Query: 763 DWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAE 942
+W YK+GFG+ GE+WLG ++I+ LT QG +L V + D+ G FA+Y SF++ E+E
Sbjct: 332 NWETYKQGFGNIDGEYWLGLENIYWLTNQGNYKLLVTMEDWSGRKVFAEYASFRLEPESE 391
Query: 943 KYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNG 1122
Y L LG + GNAGDS T HN FTT D+D+D Y NCA +G WWY +C SNLNG
Sbjct: 392 YYKLRLGRY-HGNAGDSFTWHNGKQFTTLDRDHDVYTGNCAHYQKGGWWYNACAHSNLNG 450
Query: 1123 RYLGGSH--GSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+ G H + +GV W+ +G +YS K M R
Sbjct: 451 VWYRGGHYRSRYQDGVYWAEFRGGSYSLKKVVMMIR 486
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,645,106
Number of extensions: 2104333
Number of successful extensions: 12022
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 11642
Number of HSP's successfully gapped: 35
Length of query: 463
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 357
Effective length of database: 15,340,888
Effective search space: 5476697016
Effective search space used: 5476697016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
= 1358
Score = 202 bits (515), Expect = 4e-52
Identities = 104/212 (49%), Positives = 132/212 (62%), Gaps = 2/212 (0%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P+ C + L G LSG +TI+L Q L V CDM TDGGGW VFQRR +G DF+R W
Sbjct: 1135 PQDCAQHLMNGDTLSGVYTIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKW 1194
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
A Y+ GFG+ EFWLG D+IH +T+QG ELRVD+ D + FA Y F V Y
Sbjct: 1195 AEYRVGFGNLEDEFWLGLDNIHRITSQGRYELRVDMRDGQ-ETAFASYDRFSVEDNRSLY 1253
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L LG + G AGDSL+ H F+T+D+DND +NCA+ Y+GAWWYK+CH +NLNG+Y
Sbjct: 1254 KLRLGGY-NGTAGDSLSYHQGRPFSTEDRDNDIAVTNCAMSYKGAWWYKNCHRTNLNGKY 1312
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
H + G+NW KG+ +S EMK R
Sbjct: 1313 GESRH---SQGINWYHWKGHEFSIPFVEMKMR 1341
>ref|NP_001192770.1| tenascin-N [Bos taurus].
Length = 1296
Score = 192 bits (489), Expect = 5e-49
Identities = 102/215 (47%), Positives = 129/215 (60%), Gaps = 5/215 (2%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P C ++ + SG +TIYL + L V CDMDTDGGGW VFQRR+ G +DF++ W
Sbjct: 1064 PSDCSQVQQNSNAASGLYTIYLHGDASRSLQVYCDMDTDGGGWIVFQRRNTGQLDFFKRW 1123
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGT---NELRVDLVDFEGNHQFAKYRSFQVAGEA 939
Y GFG + EFWLG D +H LT GT E+RVDL +A Y SFQVA
Sbjct: 1124 RTYVEGFGDPMKEFWLGLDKLHNLT-MGTPTRYEVRVDL-QTANESAYAVYDSFQVASSK 1181
Query: 940 EKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLN 1119
E+Y L +G + G AGD+LT HN FTT D+DND SNCA+ + G WWYK+CH++N N
Sbjct: 1182 ERYRLTVGKY-RGTAGDALTYHNGWKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPN 1240
Query: 1120 GRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
GRY H + GVNW KG+ +S E+K R
Sbjct: 1241 GRYGETKH---SEGVNWEPWKGHEFSIPFVELKIR 1272
>ref|XP_002694199.1| PREDICTED: tenascin-R-like [Bos taurus].
Length = 1296
Score = 192 bits (489), Expect = 5e-49
Identities = 102/215 (47%), Positives = 129/215 (60%), Gaps = 5/215 (2%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P C ++ + SG +TIYL + L V CDMDTDGGGW VFQRR+ G +DF++ W
Sbjct: 1064 PSDCSQVQQNSNAASGLYTIYLHGDASRSLQVYCDMDTDGGGWIVFQRRNTGQLDFFKRW 1123
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGT---NELRVDLVDFEGNHQFAKYRSFQVAGEA 939
Y GFG + EFWLG D +H LT GT E+RVDL +A Y SFQVA
Sbjct: 1124 RTYVEGFGDPMKEFWLGLDKLHNLT-MGTPTRYEVRVDL-QTANESAYAVYDSFQVASSK 1181
Query: 940 EKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLN 1119
E+Y L +G + G AGD+LT HN FTT D+DND SNCA+ + G WWYK+CH++N N
Sbjct: 1182 ERYRLTVGKY-RGTAGDALTYHNGWKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPN 1240
Query: 1120 GRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
GRY H + GVNW KG+ +S E+K R
Sbjct: 1241 GRYGETKH---SEGVNWEPWKGHEFSIPFVELKIR 1272
>ref|NP_001014909.1| angiopoietin-related protein 7 precursor [Bos taurus].
Length = 344
Score = 191 bits (485), Expect = 1e-48
Identities = 96/211 (45%), Positives = 124/211 (58%), Gaps = 4/211 (1%)
Frame = +1
Query: 604 CKELLTRGHFLSGWHTIYLPD---CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAA 774
C L + + +SG + + D L V CDM+T GGGWT+ QRR G V FYRDW
Sbjct: 129 CSSLYQKNYRISGVYKLPPDDFLGSPELEVFCDMETSGGGWTIIQRRKSGLVSFYRDWKQ 188
Query: 775 YKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKYML 954
YK+GFGS G+FWLGNDHIH L+ + T LRV++ D+EGN ++A+Y F + E Y L
Sbjct: 189 YKQGFGSIRGDFWLGNDHIHRLSRRPT-RLRVEMQDWEGNMRYAEYSHFVLGNELNSYRL 247
Query: 955 VLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRYLG 1134
LG + D+L HNN+ F+TKD+DND CA L +G +WY C SNLNG Y
Sbjct: 248 FLGNYSGDVGNDALIYHNNTAFSTKDKDNDNCLDKCAQLRKGGYWYNCCTDSNLNGVYYR 307
Query: 1135 -GSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
G H +G+ W G +YS K EMK R
Sbjct: 308 LGEHNKHLDGITWYGWHGSSYSLKRVEMKIR 338
>ref|NP_777128.1| tenascin-X [Bos taurus].
Length = 4135
Score = 191 bits (485), Expect = 1e-48
Identities = 102/214 (47%), Positives = 133/214 (62%), Gaps = 4/214 (1%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPDCQ--PLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
PR C E + G S TI+L + PL V CDM+TDGGGW VFQRR DG DF+RDW
Sbjct: 3918 PRDCGEEMQNGVSTSRTTTIFLNGNRERPLNVFCDMETDGGGWLVFQRRMDGKTDFWRDW 3977
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
Y GFG+ GEFWLGN+ +H+LT G LRVDL + FA+Y SFQV E Y
Sbjct: 3978 EDYAHGFGNISGEFWLGNEALHSLTKAGDYSLRVDLRAGD-EAVFAQYDSFQVDSADEYY 4036
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L L + G AGDS++ H+ S+F+ +D+D + +CAV Y+GAWWY++CH +NLNG Y
Sbjct: 4037 RLHLEGY-HGTAGDSMSYHSGSVFSARDRDPNNLLISCAVSYRGAWWYRNCHYANLNGLY 4095
Query: 1129 LGGSHGSFAN--GVNWSSGKGYNYSYKVSEMKFR 1224
GS + GV+W KG+++S +EMK R
Sbjct: 4096 -----GSTVDHQGVSWYYWKGFDFSVPFTEMKLR 4124
>ref|NP_001071494.1| tenascin C [Bos taurus].
Length = 1746
Score = 189 bits (479), Expect = 7e-48
Identities = 100/212 (47%), Positives = 125/212 (58%), Gaps = 2/212 (0%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
PR C + + G SG +TIYL + Q V CDM +DGGGW VF RR +G DFYR+W
Sbjct: 1526 PRDCSQAMLNGDTTSGVYTIYLNNDKTQKQEVFCDMTSDGGGWIVFLRRKNGREDFYRNW 1585
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
AY GFG EFWLG D + +TAQG ELRVDL D G A Y F V +Y
Sbjct: 1586 KAYAAGFGDLKEEFWLGLDTLSKITAQGQYELRVDLRD-HGESAHAVYDKFSVGDARTRY 1644
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L + + G AGDS+ HN F+T D+D D +NCA+ Y+GA+WYK+CH NL GRY
Sbjct: 1645 RLKVEGY-SGTAGDSMAYHNGRSFSTFDKDTDSAITNCALSYKGAFWYKNCHRVNLMGRY 1703
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
SH + GVNW KG+ +S + +EMK R
Sbjct: 1704 GDNSH---SQGVNWFHWKGHEHSIQFAEMKLR 1732
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,182,933
Number of extensions: 2058378
Number of successful extensions: 12086
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 11748
Number of HSP's successfully gapped: 27
Length of query: 463
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,174,046
Effective search space: 5060134422
Effective search space used: 5060134422
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012280
(1390 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999033.1| ficolin-2 precursor [Sus scrofa]. 541 e-154
Alignment gi|NP_999325.1| ficolin-1 precursor [Sus scrofa]. 441 e-124
Alignment gi|XP_003122287.1| PREDICTED: fibrinogen C domain-containing pr... 229 4e-60
Alignment gi|XP_003130376.1| PREDICTED: tenascin-R [Sus scrofa]. 202 5e-52
Alignment gi|NP_001116676.1| tenascin-X [Sus scrofa]. 195 4e-50
Alignment gi|XP_003130375.2| PREDICTED: tenascin-N-like [Sus scrofa]. 194 8e-50
Alignment gi|NP_999395.1| tenascin precursor [Sus scrofa]. 191 8e-49
Alignment gi|NP_001136300.1| angiopoietin-related protein 7 [Sus scrofa]. 189 3e-48
Alignment gi|NP_001103416.1| angiopoietin-related protein 2 [Sus scrofa]. 183 2e-46
Alignment gi|NP_001103417.1| angiopoietin-related protein 1 [Sus scrofa]. 179 3e-45
>ref|NP_999033.1| ficolin-2 precursor [Sus scrofa].
Length = 323
Score = 541 bits (1395), Expect = e-154
Identities = 266/323 (82%), Positives = 266/323 (82%)
Frame = +1
Query: 262 MDTRGVAAAMRPLVLLVAFLCTAAPALDTCPEVKVVGLEGSDKLSILRXXXXXXXXXXXX 441
MDTRGVAAAMRPLVLLVAFLCTAAPALDTCPEVKVVGLEGSDKLSILR
Sbjct: 1 MDTRGVAAAMRPLVLLVAFLCTAAPALDTCPEVKVVGLEGSDKLSILRGCPGLPGAAGPK 60
Query: 442 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWEPEQCLTGPRTCKELLT 621
SWE EQCLTGPRTCKELLT
Sbjct: 61 GEAGASGPKGGQGPPGAPGEPGPPGPKGDRGEKGEPGPKGESWETEQCLTGPRTCKELLT 120
Query: 622 RGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQL 801
RGH LSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQL
Sbjct: 121 RGHILSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQL 180
Query: 802 GEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKYMLVLGAFVEGN 981
GEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVA EAEKYMLVLGAFVEGN
Sbjct: 181 GEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVADEAEKYMLVLGAFVEGN 240
Query: 982 AGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRYLGGSHGSFANG 1161
AGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWY SCHVSNLNGRYLGGSHGSFANG
Sbjct: 241 AGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYNSCHVSNLNGRYLGGSHGSFANG 300
Query: 1162 VNWSSGKGYNYSYKVSEMKFRAT 1230
VNWSSGKGYNYSYKVSEMKFRAT
Sbjct: 301 VNWSSGKGYNYSYKVSEMKFRAT 323
>ref|NP_999325.1| ficolin-1 precursor [Sus scrofa].
Length = 326
Score = 441 bits (1135), Expect = e-124
Identities = 218/326 (66%), Positives = 236/326 (72%), Gaps = 3/326 (0%)
Frame = +1
Query: 262 MDTRGVAAAMRP---LVLLVAFLCTAAPALDTCPEVKVVGLEGSDKLSILRXXXXXXXXX 432
M+ VA A+ P L+L ++F AA A DTCPEVKVVGLEGSDKLSILR
Sbjct: 1 MELSRVAVALGPTGQLLLFLSFQTLAAQAADTCPEVKVVGLEGSDKLSILRGCPGLPGAA 60
Query: 433 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWEPEQCLTGPRTCKE 612
+ + C TGPRTCKE
Sbjct: 61 GPKGEAGANGPKGERGSPGVVGKAGPAGPKGDRGEKGARGEKGEPGQLQSCATGPRTCKE 120
Query: 613 LLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFG 792
LLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFG
Sbjct: 121 LLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFG 180
Query: 793 SQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKYMLVLGAFV 972
SQLGEFWLGNDHIHALTAQGT+ELRVDLVDFEGNHQFAKYRSFQVAGEAEKY LVLG F+
Sbjct: 181 SQLGEFWLGNDHIHALTAQGTSELRVDLVDFEGNHQFAKYRSFQVAGEAEKYKLVLGGFL 240
Query: 973 EGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRYLGGSHGSF 1152
EGNAGDSL+SH + F+TKDQDND ++ NCA Y GAWWY +CH SNLNGRYL G H S+
Sbjct: 241 EGNAGDSLSSHRDQFFSTKDQDNDNHSGNCAEQYHGAWWYNACHSSNLNGRYLRGLHTSY 300
Query: 1153 ANGVNWSSGKGYNYSYKVSEMKFRAT 1230
ANGVNW SG+GYNYSY+VSEMK R T
Sbjct: 301 ANGVNWRSGRGYNYSYQVSEMKVRLT 326
>ref|XP_003122287.1| PREDICTED: fibrinogen C domain-containing protein 1 [Sus scrofa].
Length = 461
Score = 229 bits (583), Expect = 4e-60
Identities = 115/226 (50%), Positives = 142/226 (62%), Gaps = 9/226 (3%)
Frame = +1
Query: 574 PEQCLTG--PRTCKELLTRGHFLSGWHTIYLPDCQP--LTVLCDMDTDGGGWTVFQRRSD 741
P C G PR C ++L G G ++++ P P V CDM TDGGGWTVFQRR D
Sbjct: 232 PRGCANGSRPRDCLDVLLSGQQEDGVYSVF-PTHDPAGFQVYCDMSTDGGGWTVFQRRED 290
Query: 742 GSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSF 921
GSV+F+R W AY+ GFG GE WLG +HALT Q EL VDL DF+ +A YRSF
Sbjct: 291 GSVNFFRGWEAYRDGFGKLTGEHWLGLKRLHALTTQAAYELHVDLEDFDNGTAYAHYRSF 350
Query: 922 QVA-----GEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAW 1086
V E + Y L + + G AGDSL H+ FTTKD+D+D +NCA Y+GAW
Sbjct: 351 GVGLFSVDPEEDGYPLTVADY-SGTAGDSLLKHSGMRFTTKDRDSDHSENNCAAFYRGAW 409
Query: 1087 WYKSCHVSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
WY++CH SNLNG+YL G+H S+A+GV WSS G+ YS K SEMK R
Sbjct: 410 WYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQYSLKFSEMKIR 455
>ref|XP_003130376.1| PREDICTED: tenascin-R [Sus scrofa].
Length = 1358
Score = 202 bits (513), Expect = 5e-52
Identities = 103/212 (48%), Positives = 132/212 (62%), Gaps = 2/212 (0%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P+ C + L G LSG +TI+L Q L V CDM TDGGGW VFQRR +G DF+R W
Sbjct: 1135 PQDCAQHLMNGDTLSGVYTIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKW 1194
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
Y+ GFG+ EFWLG D+IH +T+QG ELRVD+ D + FA Y F V Y
Sbjct: 1195 VEYRAGFGNLEDEFWLGLDNIHRITSQGRYELRVDMRDGQ-EAAFAYYDKFSVEDSRSLY 1253
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L +GA+ G AGDSL+ H F+T+D+DND +NCA+ Y+GAWWYK+CH +NLNG+Y
Sbjct: 1254 KLRIGAY-NGTAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKY 1312
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
H + G+NW KG+ +S EMK R
Sbjct: 1313 GESRH---SQGINWYHWKGHEFSIPFVEMKTR 1341
>ref|NP_001116676.1| tenascin-X [Sus scrofa].
Length = 4137
Score = 195 bits (496), Expect = 4e-50
Identities = 104/214 (48%), Positives = 133/214 (62%), Gaps = 4/214 (1%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPDCQ--PLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
PR C E + G S TI+L + PL V CDM+TDGGGW VFQRR DG DF+RDW
Sbjct: 3920 PRDCGEEMQNGVSTSRTTTIFLNGNRERPLNVFCDMETDGGGWLVFQRRMDGKTDFWRDW 3979
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
Y GFG+ GEFWLGN+ +H+LT G LRVDL E FA+Y SFQV AE Y
Sbjct: 3980 EDYAHGFGNISGEFWLGNEALHSLTKAGDYSLRVDLRAGE-EAVFAQYESFQVDSAAEHY 4038
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L L + G AGDS++ H+ S+F+ +D+D + +CAV Y+GAWWY++CH +NLNG Y
Sbjct: 4039 RLHLEGY-HGTAGDSMSYHSGSVFSARDRDPNNLLISCAVSYRGAWWYRNCHYANLNGLY 4097
Query: 1129 LGGSHGSFAN--GVNWSSGKGYNYSYKVSEMKFR 1224
GS + GV+W KG+ +S +EMK R
Sbjct: 4098 -----GSTVDHQGVSWYYWKGFEFSVPFTEMKLR 4126
>ref|XP_003130375.2| PREDICTED: tenascin-N-like [Sus scrofa].
Length = 1111
Score = 194 bits (494), Expect = 8e-50
Identities = 103/215 (47%), Positives = 129/215 (60%), Gaps = 5/215 (2%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P C ++ + SG +TIYL +PL V CDMDTDGGGW VFQRR+ G +DF++ W
Sbjct: 879 PSDCSQVQQNSNVASGLYTIYLHGDASRPLQVYCDMDTDGGGWIVFQRRNTGQLDFFKRW 938
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGT---NELRVDLVDFEGNHQFAKYRSFQVAGEA 939
Y GFG + EFWLG D +H LT GT E+RVDL FA Y FQVA
Sbjct: 939 RTYVEGFGDPMKEFWLGLDKLHNLTT-GTPTRYEVRVDL-QTANESAFAIYDFFQVASSK 996
Query: 940 EKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLN 1119
E+Y L +G + G AGD+LT HN FTT D+DND SNCA+ + G WWYK+CH++N N
Sbjct: 997 ERYRLTVGKY-RGTAGDALTYHNGWKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPN 1055
Query: 1120 GRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
GRY H + GVNW KG+ +S E+K R
Sbjct: 1056 GRYGETKH---SEGVNWEPWKGHEFSIPFVELKIR 1087
>ref|NP_999395.1| tenascin precursor [Sus scrofa].
Length = 1746
Score = 191 bits (485), Expect = 8e-49
Identities = 100/212 (47%), Positives = 126/212 (59%), Gaps = 2/212 (0%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
PR C + + G SG +TIY+ + Q L V CDM +D GGW VF RR +G DFYR+W
Sbjct: 1526 PRDCSQAMLNGDTTSGLYTIYVNNDKAQKLEVFCDMTSDSGGWIVFLRRKNGREDFYRNW 1585
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
AY GFG EFWLG D + +TAQG ELRVDL D G +A Y F V +Y
Sbjct: 1586 KAYAAGFGDLKEEFWLGLDALSKITAQGQYELRVDLRD-HGETAYAVYDRFSVGDARTRY 1644
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L + + G AGDS+ HN F+T D+D D +NCA+ Y+GA+WYK+CH NL GRY
Sbjct: 1645 KLKVEGY-SGTAGDSMAYHNGRSFSTFDKDTDSAITNCALSYKGAFWYKNCHRVNLMGRY 1703
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
SH + GVNW KG+ YS + +EMK R
Sbjct: 1704 GDNSH---SQGVNWFHWKGHEYSIQFAEMKLR 1732
>ref|NP_001136300.1| angiopoietin-related protein 7 [Sus scrofa].
Length = 344
Score = 189 bits (480), Expect = 3e-48
Identities = 95/211 (45%), Positives = 124/211 (58%), Gaps = 4/211 (1%)
Frame = +1
Query: 604 CKELLTRGHFLSGWHTIYLPD---CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAA 774
C L + + +SG + + D L V CDM+T GGGWT+ QRR G V FYRDW
Sbjct: 129 CSSLYQKSYRISGVYKLPPDDFLGSPELEVFCDMETSGGGWTIIQRRKSGLVSFYRDWKQ 188
Query: 775 YKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKYML 954
YK+GFGS G+FWLGN+HIH L+ + T LRV++ D+EG + A+Y F + E Y L
Sbjct: 189 YKQGFGSIRGDFWLGNEHIHRLSRRPT-RLRVEMEDWEGTKRHAEYSRFALGNELNSYRL 247
Query: 955 VLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNG-RYL 1131
LG + D+L+ HNN+ F+TKD+DND CA L +G +WY C SNLNG YL
Sbjct: 248 FLGNYSGSVGNDALSYHNNTAFSTKDKDNDNCLDKCAQLRKGGYWYNCCTDSNLNGVYYL 307
Query: 1132 GGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
G H +G+ W G +YS K EMK R
Sbjct: 308 LGEHNKHLDGITWYGWHGSSYSLKRVEMKIR 338
>ref|NP_001103416.1| angiopoietin-related protein 2 [Sus scrofa].
Length = 493
Score = 183 bits (464), Expect = 2e-46
Identities = 98/216 (45%), Positives = 130/216 (60%), Gaps = 4/216 (1%)
Frame = +1
Query: 589 TGP-RTCKELLTRGHFLSGWHTIYLPDCQPLT-VLCDMDTDGGGWTVFQRRSDGSVDFYR 762
+GP R C + L GH S + + + L V CD D GGWTV QRR DGSV+F+R
Sbjct: 272 SGPWRDCLQALEDGHDTSSIYLVKPENTNRLMQVWCDQRHDPGGWTVIQRRLDGSVNFFR 331
Query: 763 DWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAE 942
+W YK+GFG+ GE+WLG ++I+ LT QG +L V + D+ G FA+Y SF++ E+E
Sbjct: 332 NWETYKQGFGNIDGEYWLGLENIYWLTNQGNYKLLVTMEDWSGRKVFAEYASFRLEPESE 391
Query: 943 KYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNG 1122
Y L LG + GNAGDS T HN FTT D+D+D Y NCA +G WWY +C SNLNG
Sbjct: 392 YYKLRLGRY-HGNAGDSFTWHNGKQFTTLDRDHDVYTGNCAHYQKGGWWYNACAHSNLNG 450
Query: 1123 RYLGGSH--GSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+ G H + +GV W+ +G +YS K M R
Sbjct: 451 VWYRGGHYRSRYQDGVYWAEFRGGSYSLKKVVMMIR 486
>ref|NP_001103417.1| angiopoietin-related protein 1 [Sus scrofa].
Length = 491
Score = 179 bits (454), Expect = 3e-45
Identities = 88/215 (40%), Positives = 133/215 (61%), Gaps = 4/215 (1%)
Frame = +1
Query: 592 GP-RTCKELLTRGHFLSGWHTIYLPDCQ-PLTVLCDMDTDGGGWTVFQRRSDGSVDFYRD 765
GP + C+ GH +SG + I + P+ + C+ D GGWTV Q+R+DGSV+F+R+
Sbjct: 275 GPFKDCQHAKEAGHSVSGIYMIKPENSNGPMQLWCENSLDPGGWTVIQKRTDGSVNFFRN 334
Query: 766 WAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEK 945
W YK+GFG+ GE+WLG ++I+ L+ Q +L ++L D+ +A+Y SF++ E+E
Sbjct: 335 WENYKKGFGNTDGEYWLGLENIYMLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESEF 394
Query: 946 YMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGR 1125
Y L LG + +GNAGDS+ HN FTT D+D D YA NCA ++G WWY +C SNLNG
Sbjct: 395 YRLRLGTY-QGNAGDSMMWHNGKQFTTLDRDKDMYAGNCAHFHKGGWWYNACAHSNLNGV 453
Query: 1126 YLGGSH--GSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+ G H + +G+ W+ G +YS + +M +
Sbjct: 454 WYRGGHYRSRYQDGIFWAEYGGGSYSLRAVQMMIK 488
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,181,119
Number of extensions: 1360147
Number of successful extensions: 8036
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 7746
Number of HSP's successfully gapped: 31
Length of query: 463
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,804,438
Effective search space: 3178402118
Effective search space used: 3178402118
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012280
(1390 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034320.1| ficolin-2 precursor [Mus musculus]. 375 e-104
Alignment gi|NP_032021.1| ficolin-1 precursor [Mus musculus]. 337 1e-92
Alignment gi|NP_849218.2| fibrinogen C domain-containing protein 1 [Mus m... 226 3e-59
Alignment gi|NP_083844.1| microfibril-associated glycoprotein 4 precursor... 220 2e-57
Alignment gi|NP_071707.2| tenascin-R precursor [Mus musculus]. 199 3e-51
Alignment gi|NP_035737.2| tenascin [Mus musculus]. 195 6e-50
Alignment gi|NP_001034643.1| angiopoietin-related protein 7 precursor [Mu... 193 3e-49
Alignment gi|NP_808507.2| tenascin-N precursor [Mus musculus]. 193 3e-49
Alignment gi|NP_112453.2| tenascin-X [Mus musculus]. 189 4e-48
Alignment gi|NP_036053.2| angiopoietin-related protein 2 precursor [Mus m... 183 2e-46
>ref|NP_034320.1| ficolin-2 precursor [Mus musculus].
Length = 314
Score = 375 bits (962), Expect = e-104
Identities = 181/296 (61%), Positives = 203/296 (68%)
Frame = +1
Query: 337 ALDTCPEVKVVGLEGSDKLSILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 516
A TCPE+KV+ LEG +L+IL+
Sbjct: 17 AAGTCPELKVLDLEGYKQLTILQGCPGLPGAAGPKGEAGAKGDRGESGLPGIPGKEGPTG 76
Query: 517 XXXXXXXXXXXXXXXXSWEPEQCLTGPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDM 696
S + C TGPRTCKELLT+GHFL+GW+TIYLPDC+PLTVLCDM
Sbjct: 77 PKGNQGEKGIRGEKGDSGPSQSCATGPRTCKELLTQGHFLTGWYTIYLPDCRPLTVLCDM 136
Query: 697 DTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDL 876
DTDGGGWTVFQRR DGSVDF+RDW +YKRGFGSQLGEFWLGND+IHALT QGT+ELRVDL
Sbjct: 137 DTDGGGWTVFQRRLDGSVDFFRDWTSYKRGFGSQLGEFWLGNDNIHALTTQGTSELRVDL 196
Query: 877 VDFEGNHQFAKYRSFQVAGEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYAS 1056
DFEG H FAKY SFQ+ GEAEKY L+LG F+ G AGDSLT HNN LF+TKDQDND S
Sbjct: 197 SDFEGKHDFAKYSSFQIQGEAEKYKLILGNFLGGGAGDSLTPHNNRLFSTKDQDNDGSTS 256
Query: 1057 NCAVLYQGAWWYKSCHVSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+CA+ Y GAWWY CH SNLNG YL G H S+ANGVNW S +GYNYS KVSEMK R
Sbjct: 257 SCAMGYHGAWWYSQCHTSNLNGLYLRGPHKSYANGVNWKSWRGYNYSCKVSEMKVR 312
>ref|NP_032021.1| ficolin-1 precursor [Mus musculus].
Length = 334
Score = 337 bits (864), Expect = 1e-92
Identities = 149/216 (68%), Positives = 177/216 (81%)
Frame = +1
Query: 583 CLTGPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYR 762
C GPR+CK+LLTRG FL+GW+TI+LPDC+PLTVLCDMD DGGGWTVFQRR DGS+DF+R
Sbjct: 119 CQRGPRSCKDLLTRGIFLTGWYTIHLPDCRPLTVLCDMDVDGGGWTVFQRRVDGSIDFFR 178
Query: 763 DWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAE 942
DW +YKRGFG+ EFWLGND++H LTA G ELRVDL DF+G +AKY SFQV+ E E
Sbjct: 179 DWDSYKRGFGNLGTEFWLGNDYLHLLTANGNQELRVDLQDFQGKGSYAKYSSFQVSEEQE 238
Query: 943 KYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNG 1122
KY L LG F+EG AGDSLT HNN FTT DQDND + NCA L+ GAWWY +CH SNLNG
Sbjct: 239 KYKLTLGQFLEGTAGDSLTKHNNMSFTTHDQDNDANSMNCAALFHGAWWYHNCHQSNLNG 298
Query: 1123 RYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFRAT 1230
RYL GSH S+A+G+NW +G+G++YSYKV+EMK RA+
Sbjct: 299 RYLSGSHESYADGINWGTGQGHHYSYKVAEMKIRAS 334
>ref|NP_849218.2| fibrinogen C domain-containing protein 1 [Mus musculus].
Length = 459
Score = 226 bits (577), Expect = 3e-59
Identities = 116/226 (51%), Positives = 141/226 (62%), Gaps = 9/226 (3%)
Frame = +1
Query: 574 PEQCLTG--PRTCKELLTRGHFLSGWHTIYLPDCQP--LTVLCDMDTDGGGWTVFQRRSD 741
P C G PR C ++L G G ++I+ P P V CDM TDGGGWTVFQRR D
Sbjct: 230 PRGCANGSRPRDCLDVLLSGQQDDGVYSIF-PTHYPAGFQVYCDMRTDGGGWTVFQRRED 288
Query: 742 GSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSF 921
GSV+F+R W AY+ GFG GE WLG IHALT Q EL VDL DF+ +A Y SF
Sbjct: 289 GSVNFFRGWEAYREGFGKLTGEHWLGLKRIHALTTQAAYELHVDLEDFDNGTAYAHYGSF 348
Query: 922 QVA-----GEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAW 1086
V E + Y L + + G AGDSL H+ FTTKD+D+D +NCA Y+GAW
Sbjct: 349 GVGLFSVDPEEDGYPLTVADY-SGTAGDSLLKHSGMRFTTKDRDSDHSENNCAAFYRGAW 407
Query: 1087 WYKSCHVSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
WY++CH SNLNG+YL G+H S+A+GV WSS G+ YS K SEMK R
Sbjct: 408 WYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQYSLKFSEMKIR 453
>ref|NP_083844.1| microfibril-associated glycoprotein 4 precursor [Mus musculus].
Length = 257
Score = 220 bits (561), Expect = 2e-57
Identities = 106/222 (47%), Positives = 142/222 (63%), Gaps = 6/222 (2%)
Frame = +1
Query: 577 EQCLTGPRTCKELLTRGHFLSGWHTIY-LPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVD 753
+ CL P C ++ +G+ G + IY P+ V CDM T+GG WTVFQ+R +GSV
Sbjct: 34 KSCLQQPLDCDDIYAQGYQEDGVYLIYPYGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVS 93
Query: 754 FYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVA- 930
F+R W+ YK GFG GE+WLG ++H LT + ELRVDL DFE N +AKY F ++
Sbjct: 94 FFRGWSDYKLGFGRADGEYWLGLQNLHLLTLKQKYELRVDLEDFENNTAYAKYIDFSISP 153
Query: 931 ----GEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKS 1098
E + Y L + F +G AGDSL+ H+ F+T D+D D + NCA L GA+W++S
Sbjct: 154 NAISAEEDGYTLYVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRS 213
Query: 1099 CHVSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
CH +NLNG YLGGSH S+ANG+NW+ KG+ YS K +EMK R
Sbjct: 214 CHFANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTEMKIR 255
>ref|NP_071707.2| tenascin-R precursor [Mus musculus].
Length = 1358
Score = 199 bits (507), Expect = 3e-51
Identities = 102/212 (48%), Positives = 132/212 (62%), Gaps = 2/212 (0%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P+ C + L G LSG +TI+L L V CDM TDGGGW VFQRR +G DF+R W
Sbjct: 1135 PQDCAQHLMNGDTLSGVYTIFLNGELSHKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKW 1194
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
A Y+ GFG+ EFWLG D+IH +TAQG ELRVD+ D + FA Y F V Y
Sbjct: 1195 ADYRVGFGNLEDEFWLGLDNIHRITAQGRYELRVDMRDGQ-EAVFAYYDKFAVEDSRSLY 1253
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
+ +G++ G AGDSL+ H F+T+D+DND +NCA+ Y+GAWWYK+CH +NLNG+Y
Sbjct: 1254 KIRIGSY-NGTAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKY 1312
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
H + G+NW KG+ +S EMK R
Sbjct: 1313 GESRH---SQGINWYHWKGHEFSIPFVEMKMR 1341
>ref|NP_035737.2| tenascin [Mus musculus].
Length = 2019
Score = 195 bits (496), Expect = 6e-50
Identities = 100/212 (47%), Positives = 128/212 (60%), Gaps = 2/212 (0%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYL--PDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
PR C + + G SG +TIY+ Q L V CDM +DGGGW VF RR +G DFYR+W
Sbjct: 1799 PRDCSQAMLNGDTTSGLYTIYINGDKTQALEVYCDMTSDGGGWIVFLRRKNGREDFYRNW 1858
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
AY GFG + EFWLG D++ +TAQG ELRVDL D G +A Y F V +Y
Sbjct: 1859 KAYAAGFGDRREEFWLGLDNLSKITAQGQYELRVDLQD-HGESAYAVYDRFSVGDAKSRY 1917
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L + + G AGDS+ HN F+T D+D D +NCA+ Y+GA+WYK+CH NL GRY
Sbjct: 1918 KLKVEGY-SGTAGDSMNYHNGRSFSTYDKDTDSAITNCALSYKGAFWYKNCHRVNLMGRY 1976
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+H + GVNW KG+ YS + +EMK R
Sbjct: 1977 GDNNH---SQGVNWFHWKGHEYSIQFAEMKLR 2005
>ref|NP_001034643.1| angiopoietin-related protein 7 precursor [Mus musculus].
Length = 337
Score = 193 bits (490), Expect = 3e-49
Identities = 101/213 (47%), Positives = 130/213 (61%), Gaps = 6/213 (2%)
Frame = +1
Query: 604 CKELLTRGHFLSGWHTIYLPD----CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWA 771
C L + + +SG + + PD L V CDM+T GGGWT+ QRR G V FY+DW
Sbjct: 122 CSSLYQKNYRISGVYKLP-PDEFLGSPELEVFCDMETSGGGWTIIQRRKSGLVSFYQDWR 180
Query: 772 AYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKYM 951
YK+GFGS G+FWLGN+HIH LT Q + LRV+L D+EGN ++A+Y F + E Y
Sbjct: 181 QYKQGFGSIRGDFWLGNEHIHRLTRQ-PSRLRVELEDWEGNARYAEYSYFALGNELNSYR 239
Query: 952 LVLGAFVEGNAG-DSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L LG + GN G D+L HNN++F+TKD+DND CA L +G +WY C SNLNG Y
Sbjct: 240 LFLGNY-SGNVGKDALLYHNNTVFSTKDKDNDNCLDKCAQLRKGGYWYNCCTDSNLNGVY 298
Query: 1129 LG-GSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
G H +G++W G NYS K EMK R
Sbjct: 299 YRLGEHRKHMDGISWYGWHGANYSLKRVEMKIR 331
>ref|NP_808507.2| tenascin-N precursor [Mus musculus].
Length = 1560
Score = 193 bits (490), Expect = 3e-49
Identities = 99/214 (46%), Positives = 129/214 (60%), Gaps = 4/214 (1%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P C ++ + SG +TIYL +P+ V CDMDTDGGGW VFQRR+ G +DF++ W
Sbjct: 1329 PSDCSQVQQNTNAASGLYTIYLNGDASRPMQVYCDMDTDGGGWIVFQRRNTGQLDFFKRW 1388
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTN--ELRVDLVDFEGNHQFAKYRSFQVAGEAE 942
+Y GFG + EFWLG D +H LT T E+R DL F +A Y FQVA E
Sbjct: 1389 RSYVEGFGDPMKEFWLGLDKLHNLTTGTTTRYEVRADLQTF-NESAYAVYDFFQVASSKE 1447
Query: 943 KYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNG 1122
+Y L +G + G AGD+LT HN FTT D+DND SNCA+ + G WWYK+CH++N NG
Sbjct: 1448 RYKLSVGKY-RGTAGDALTYHNGWKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPNG 1506
Query: 1123 RYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+Y H + GVNW KG+ +S E+K R
Sbjct: 1507 KYGETKH---SEGVNWEPWKGHEFSIPYVELKIR 1537
>ref|NP_112453.2| tenascin-X [Mus musculus].
Length = 3126
Score = 189 bits (480), Expect = 4e-48
Identities = 101/214 (47%), Positives = 131/214 (61%), Gaps = 4/214 (1%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPDCQ--PLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
PR C E L G S TI+L + PL V CDM+TDGGGW VFQRR DG DF+RDW
Sbjct: 2909 PRDCGEELKNGPSASKTTTIFLNGNRERPLDVFCDMETDGGGWLVFQRRMDGQTDFWRDW 2968
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
Y GFG+ GEFWLGN+ +H+LT G LRVDL + FA+Y F+V E Y
Sbjct: 2969 EEYAHGFGNISGEFWLGNEALHSLTQAGDYSLRVDLRAGK-EAVFAQYDFFRVDSAKENY 3027
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L L + G AGDS++ H+ S+F+ +D+D + +CAV Y+GAWWY++CH +NLNG Y
Sbjct: 3028 RLHLEGY-HGTAGDSMSYHSGSVFSARDRDPNNLLISCAVSYRGAWWYRNCHYANLNGLY 3086
Query: 1129 LGGSHGSFAN--GVNWSSGKGYNYSYKVSEMKFR 1224
GS + GV+W KG+ +S +EMK R
Sbjct: 3087 -----GSTVDHQGVSWYHWKGFEFSVPFTEMKLR 3115
>ref|NP_036053.2| angiopoietin-related protein 2 precursor [Mus musculus].
Length = 493
Score = 183 bits (465), Expect = 2e-46
Identities = 98/216 (45%), Positives = 130/216 (60%), Gaps = 4/216 (1%)
Frame = +1
Query: 589 TGP-RTCKELLTRGHFLSGWHTIYLPDCQPLT-VLCDMDTDGGGWTVFQRRSDGSVDFYR 762
+GP R C + L GH S + + + L V CD D GGWTV QRR DGSV+F+R
Sbjct: 272 SGPWRDCLQALEDGHSTSSIYLVKPENTNRLMQVWCDQRHDPGGWTVIQRRLDGSVNFFR 331
Query: 763 DWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAE 942
+W YK+GFG+ GE+WLG ++I+ LT QG +L V + D+ G FA+Y SF++ E+E
Sbjct: 332 NWETYKQGFGNIDGEYWLGLENIYWLTNQGNYKLLVTMEDWSGRKVFAEYASFRLEPESE 391
Query: 943 KYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNG 1122
Y L LG + GNAGDS T HN FTT D+D+D Y NCA +G WWY +C SNLNG
Sbjct: 392 YYKLRLGRY-HGNAGDSFTWHNGKQFTTLDRDHDVYTGNCAHYQKGGWWYNACAHSNLNG 450
Query: 1123 RYLGGSH--GSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+ G H + +GV W+ +G +YS K M R
Sbjct: 451 VWYRGGHYRSRYQDGVYWAEFRGGSYSLKKVVMMIR 486
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,111,543
Number of extensions: 1655867
Number of successful extensions: 8674
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 8433
Number of HSP's successfully gapped: 22
Length of query: 463
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 358
Effective length of database: 12,463,779
Effective search space: 4462032882
Effective search space used: 4462032882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012280
(1390 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004099.2| ficolin-2 isoform a precursor [Homo sapiens]. 408 e-122
Alignment gi|NP_001994.2| ficolin-1 precursor [Homo sapiens]. 409 e-114
Alignment gi|NP_056652.1| ficolin-2 isoform b precursor [Homo sapiens]. 408 e-114
Alignment gi|NP_003656.2| ficolin-3 isoform 1 precursor [Homo sapiens]. 258 9e-69
Alignment gi|NP_775628.1| ficolin-3 isoform 2 precursor [Homo sapiens]. 255 6e-68
Alignment gi|NP_116232.3| fibrinogen C domain-containing protein 1 [Homo ... 229 6e-60
Alignment gi|NP_001138578.1| fibrinogen C domain-containing protein 1 [Ho... 229 6e-60
Alignment gi|NP_001185624.1| microfibril-associated glycoprotein 4 isofor... 219 4e-57
Alignment gi|NP_002395.1| microfibril-associated glycoprotein 4 isoform 2... 219 4e-57
Alignment gi|NP_003276.3| tenascin-R precursor [Homo sapiens]. 200 3e-51
>ref|NP_004099.2| ficolin-2 isoform a precursor [Homo sapiens].
Length = 313
Score = 408 bits (1049), Expect(3) = e-122
Identities = 185/218 (84%), Positives = 201/218 (92%)
Frame = +1
Query: 571 EPEQCLTGPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSV 750
EP+ CLTGPRTCK+LL RGHFLSGWHTIYLPDC+PLTVLCDMDTDGGGWTVFQRR DGSV
Sbjct: 94 EPQPCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSV 153
Query: 751 DFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVA 930
DFYRDWA YK+GFGS+LGEFWLGND+IHALTAQGT+ELRVDLVDFE N+QFAKYRSF+VA
Sbjct: 154 DFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVA 213
Query: 931 GEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVS 1110
EAEKY LVLGAFVEG+AGDSLT HNN F+TKDQDND NCAV++QGAWWYK+CHVS
Sbjct: 214 DEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVS 273
Query: 1111 NLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
NLNGRYL G+HGSFANG+NW SGKGYNYSYKVSEMK R
Sbjct: 274 NLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVR 311
Score = 47.0 bits (110), Expect(3) = e-122
Identities = 25/36 (69%), Positives = 29/36 (80%), Gaps = 2/36 (5%)
Frame = +1
Query: 304 LLVAFL--CTAAPALDTCPEVKVVGLEGSDKLSILR 405
LL++FL A A DTCPEVK+VGLEGSDKL+ILR
Sbjct: 15 LLLSFLGMAWALQAADTCPEVKMVGLEGSDKLTILR 50
Score = 26.6 bits (57), Expect(3) = e-122
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 434 GPRERRAPMDRREDKALPEPLGSQDPPGPKETEG 535
GP+ +R ++ P P G PPGP G
Sbjct: 60 GPKGEAGTNGKRGERGPPGPPGKAGPPGPNGAPG 93
>ref|NP_001994.2| ficolin-1 precursor [Homo sapiens].
Length = 326
Score = 409 bits (1052), Expect = e-114
Identities = 204/324 (62%), Positives = 227/324 (70%), Gaps = 3/324 (0%)
Frame = +1
Query: 262 MDTRGVAAAMRPLVLLVAFLCTA---APALDTCPEVKVVGLEGSDKLSILRXXXXXXXXX 432
M+ G A VLLV FL A A DTCPEVKVVGLEGSDKL+ILR
Sbjct: 1 MELSGATMARGLAVLLVLFLHIKNLPAQAADTCPEVKVVGLEGSDKLTILRGCPGLPGAP 60
Query: 433 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWEPEQCLTGPRTCKE 612
+ + + C TGPR CK+
Sbjct: 61 GPKGEAGVIGERGERGLPGAPGKAGPVGPKGDRGEKGMRGEKGDAGQSQSCATGPRNCKD 120
Query: 613 LLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFG 792
LL RG+FLSGWHTIYLPDC+PLTVLCDMDTDGGGWTVFQRR DGSVDFYRDWAAYK+GFG
Sbjct: 121 LLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFG 180
Query: 793 SQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKYMLVLGAFV 972
SQLGEFWLGND+IHALTAQG++ELRVDLVDFEGNHQFAKY+SF+VA EAEKY LVLGAFV
Sbjct: 181 SQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFV 240
Query: 973 EGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRYLGGSHGSF 1152
G+AG+SLT HNN+ F+TKDQDND +SNCA +QGAWWY CH SNLNG YL G H S+
Sbjct: 241 GGSAGNSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESY 300
Query: 1153 ANGVNWSSGKGYNYSYKVSEMKFR 1224
ANG+NWS+ KGY YSYKVSEMK R
Sbjct: 301 ANGINWSAAKGYKYSYKVSEMKVR 324
>ref|NP_056652.1| ficolin-2 isoform b precursor [Homo sapiens].
Length = 275
Score = 408 bits (1049), Expect = e-114
Identities = 185/218 (84%), Positives = 201/218 (92%)
Frame = +1
Query: 571 EPEQCLTGPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSV 750
EP+ CLTGPRTCK+LL RGHFLSGWHTIYLPDC+PLTVLCDMDTDGGGWTVFQRR DGSV
Sbjct: 56 EPQPCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSV 115
Query: 751 DFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVA 930
DFYRDWA YK+GFGS+LGEFWLGND+IHALTAQGT+ELRVDLVDFE N+QFAKYRSF+VA
Sbjct: 116 DFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVA 175
Query: 931 GEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVS 1110
EAEKY LVLGAFVEG+AGDSLT HNN F+TKDQDND NCAV++QGAWWYK+CHVS
Sbjct: 176 DEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHVS 235
Query: 1111 NLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
NLNGRYL G+HGSFANG+NW SGKGYNYSYKVSEMK R
Sbjct: 236 NLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVR 273
>ref|NP_003656.2| ficolin-3 isoform 1 precursor [Homo sapiens].
Length = 299
Score = 258 bits (659), Expect = 9e-69
Identities = 116/215 (53%), Positives = 150/215 (69%)
Frame = +1
Query: 580 QCLTGPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFY 759
+C GPR C+ELL++G LSGW+ + LP+ + L V CDMDT+GGGW VFQRR DGSVDF+
Sbjct: 85 RCQEGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFF 144
Query: 760 RDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEA 939
R W++Y+ GFG+Q EFWLGN+++H LT QG ELRV+L DF GN FA Y +F++ GE
Sbjct: 145 RSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEV 204
Query: 940 EKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLN 1119
+ Y L LG F EG AGDSL+ H+ FTT D D+D SNCAV+ GAWWY SC+ SNLN
Sbjct: 205 DHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLN 264
Query: 1120 GRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
GRY + G++W+SG+G + Y+ M R
Sbjct: 265 GRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR 299
>ref|NP_775628.1| ficolin-3 isoform 2 precursor [Homo sapiens].
Length = 288
Score = 255 bits (652), Expect = 6e-68
Identities = 115/211 (54%), Positives = 148/211 (70%)
Frame = +1
Query: 592 GPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWA 771
GPR C+ELL++G LSGW+ + LP+ + L V CDMDT+GGGW VFQRR DGSVDF+R W+
Sbjct: 78 GPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWS 137
Query: 772 AYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKYM 951
+Y+ GFG+Q EFWLGN+++H LT QG ELRV+L DF GN FA Y +F++ GE + Y
Sbjct: 138 SYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQ 197
Query: 952 LVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRYL 1131
L LG F EG AGDSL+ H+ FTT D D+D SNCAV+ GAWWY SC+ SNLNGRY
Sbjct: 198 LALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYA 257
Query: 1132 GGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+ G++W+SG+G + Y+ M R
Sbjct: 258 VSEAAAHKYGIDWASGRGVGHPYRRVRMMLR 288
>ref|NP_116232.3| fibrinogen C domain-containing protein 1 [Homo sapiens].
Length = 461
Score = 229 bits (583), Expect = 6e-60
Identities = 117/226 (51%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Frame = +1
Query: 574 PEQCLTG--PRTCKELLTRGHFLSGWHTIYLPDCQP--LTVLCDMDTDGGGWTVFQRRSD 741
P C TG PR C ++L G G ++++ P P V CDM TDGGGWTVFQRR D
Sbjct: 232 PRGCATGSRPRDCLDVLLSGQQDDGVYSVF-PTHYPAGFQVYCDMRTDGGGWTVFQRRED 290
Query: 742 GSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSF 921
GSV+F+R W AY+ GFG GE WLG IHALT Q EL VDL DFE +A+Y SF
Sbjct: 291 GSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALTTQAAYELHVDLEDFENGTAYARYGSF 350
Query: 922 QVA-----GEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAW 1086
V E + Y L + + G AGDSL H+ FTTKD+D+D +NCA Y+GAW
Sbjct: 351 GVGLFSVDPEEDGYPLTVADY-SGTAGDSLLKHSGMRFTTKDRDSDHSENNCAAFYRGAW 409
Query: 1087 WYKSCHVSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
WY++CH SNLNG+YL G+H S+A+GV WSS G+ YS K SEMK R
Sbjct: 410 WYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQYSLKFSEMKIR 455
>ref|NP_001138578.1| fibrinogen C domain-containing protein 1 [Homo sapiens].
Length = 461
Score = 229 bits (583), Expect = 6e-60
Identities = 117/226 (51%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Frame = +1
Query: 574 PEQCLTG--PRTCKELLTRGHFLSGWHTIYLPDCQP--LTVLCDMDTDGGGWTVFQRRSD 741
P C TG PR C ++L G G ++++ P P V CDM TDGGGWTVFQRR D
Sbjct: 232 PRGCATGSRPRDCLDVLLSGQQDDGVYSVF-PTHYPAGFQVYCDMRTDGGGWTVFQRRED 290
Query: 742 GSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSF 921
GSV+F+R W AY+ GFG GE WLG IHALT Q EL VDL DFE +A+Y SF
Sbjct: 291 GSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALTTQAAYELHVDLEDFENGTAYARYGSF 350
Query: 922 QVA-----GEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAW 1086
V E + Y L + + G AGDSL H+ FTTKD+D+D +NCA Y+GAW
Sbjct: 351 GVGLFSVDPEEDGYPLTVADY-SGTAGDSLLKHSGMRFTTKDRDSDHSENNCAAFYRGAW 409
Query: 1087 WYKSCHVSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
WY++CH SNLNG+YL G+H S+A+GV WSS G+ YS K SEMK R
Sbjct: 410 WYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQYSLKFSEMKIR 455
>ref|NP_001185624.1| microfibril-associated glycoprotein 4 isoform 1 precursor [Homo
sapiens].
Length = 279
Score = 219 bits (559), Expect = 4e-57
Identities = 107/220 (48%), Positives = 140/220 (63%), Gaps = 6/220 (2%)
Frame = +1
Query: 583 CLTGPRTCKELLTRGHFLSGWHTIYLPDCQ-PLTVLCDMDTDGGGWTVFQRRSDGSVDFY 759
CL P C ++ +G+ G + IY P+ V CDM T+GG WTVFQ+R +GSV F+
Sbjct: 58 CLQQPLDCDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFF 117
Query: 760 RDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQ----- 924
R W YK GFG GE+WLG ++H LT + ELRVDL DFE N +AKY F
Sbjct: 118 RGWNDYKLGFGRADGEYWLGLQNMHLLTLKQKYELRVDLEDFENNTAYAKYADFSISPNA 177
Query: 925 VAGEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCH 1104
V+ E + Y L + F +G AGDSL+ H+ F+T D+D D + NCA L GA+W++SCH
Sbjct: 178 VSAEEDGYTLFVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCH 237
Query: 1105 VSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+NLNG YLGGSH S+ANG+NW+ KG+ YS K +EMK R
Sbjct: 238 FANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTEMKIR 277
>ref|NP_002395.1| microfibril-associated glycoprotein 4 isoform 2 precursor [Homo
sapiens].
Length = 255
Score = 219 bits (559), Expect = 4e-57
Identities = 107/220 (48%), Positives = 140/220 (63%), Gaps = 6/220 (2%)
Frame = +1
Query: 583 CLTGPRTCKELLTRGHFLSGWHTIYLPDCQ-PLTVLCDMDTDGGGWTVFQRRSDGSVDFY 759
CL P C ++ +G+ G + IY P+ V CDM T+GG WTVFQ+R +GSV F+
Sbjct: 34 CLQQPLDCDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFF 93
Query: 760 RDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQ----- 924
R W YK GFG GE+WLG ++H LT + ELRVDL DFE N +AKY F
Sbjct: 94 RGWNDYKLGFGRADGEYWLGLQNMHLLTLKQKYELRVDLEDFENNTAYAKYADFSISPNA 153
Query: 925 VAGEAEKYMLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCH 1104
V+ E + Y L + F +G AGDSL+ H+ F+T D+D D + NCA L GA+W++SCH
Sbjct: 154 VSAEEDGYTLFVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCH 213
Query: 1105 VSNLNGRYLGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
+NLNG YLGGSH S+ANG+NW+ KG+ YS K +EMK R
Sbjct: 214 FANLNGFYLGGSHLSYANGINWAQWKGFYYSLKRTEMKIR 253
>ref|NP_003276.3| tenascin-R precursor [Homo sapiens].
Length = 1358
Score = 200 bits (508), Expect = 3e-51
Identities = 102/212 (48%), Positives = 132/212 (62%), Gaps = 2/212 (0%)
Frame = +1
Query: 595 PRTCKELLTRGHFLSGWHTIYLPD--CQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDW 768
P+ C + L G LSG + I+L Q L V CDM TDGGGW VFQRR +G DF+R W
Sbjct: 1135 PQDCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKW 1194
Query: 769 AAYKRGFGSQLGEFWLGNDHIHALTAQGTNELRVDLVDFEGNHQFAKYRSFQVAGEAEKY 948
A Y+ GFG+ EFWLG D+IH +T+QG ELRVD+ D + FA Y F V Y
Sbjct: 1195 ADYRVGFGNVEDEFWLGLDNIHRITSQGRYELRVDMRDGQ-EAAFASYDRFSVEDSRNLY 1253
Query: 949 MLVLGAFVEGNAGDSLTSHNNSLFTTKDQDNDQYASNCAVLYQGAWWYKSCHVSNLNGRY 1128
L +G++ G AGDSL+ H F+T+D+DND +NCA+ Y+GAWWYK+CH +NLNG+Y
Sbjct: 1254 KLRIGSY-NGTAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKY 1312
Query: 1129 LGGSHGSFANGVNWSSGKGYNYSYKVSEMKFR 1224
H + G+NW KG+ +S EMK R
Sbjct: 1313 GESRH---SQGINWYHWKGHEFSIPFVEMKMR 1341
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,104,621
Number of extensions: 2025302
Number of successful extensions: 11515
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 11168
Number of HSP's successfully gapped: 42
Length of query: 463
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,802,980
Effective search space: 5284663860
Effective search space used: 5284663860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012280
(1390 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 811 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 811 bits (409), Expect = 0.0
Identities = 409/409 (100%)
Strand = Plus / Plus
Query: 982 gcaggtgattccctgacgtcccacaacaacagcctcttcaccaccaaagaccaggacaac 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308202613 gcaggtgattccctgacgtcccacaacaacagcctcttcaccaccaaagaccaggacaac 308202672
Query: 1042 gaccagtacgcctcaaattgtgcagtgctgtaccagggagcctggtggtacaagagctgt 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308202673 gaccagtacgcctcaaattgtgcagtgctgtaccagggagcctggtggtacaagagctgt 308202732
Query: 1102 cacgtgtccaacctgaacggccgctacctcgggggctcgcatgggagctttgcaaacggc 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308202733 cacgtgtccaacctgaacggccgctacctcgggggctcgcatgggagctttgcaaacggc 308202792
Query: 1162 gtcaactggagttcggggaaagggtacaactacagctacaaggtgtcggagatgaagttt 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308202793 gtcaactggagttcggggaaagggtacaactacagctacaaggtgtcggagatgaagttt 308202852
Query: 1222 cgggccacctagggcgggacagtgcttccagagccctccctgcggaggggccacggggct 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308202853 cgggccacctagggcgggacagtgcttccagagccctccctgcggaggggccacggggct 308202912
Query: 1282 cccgctcactatccgcccgggtgtggaagggccacatcccaacccctgggtgggggccat 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308202913 cccgctcactatccgcccgggtgtggaagggccacatcccaacccctgggtgggggccat 308202972
Query: 1342 gccctctgcaccgccaccagcttccaatcttctgtccctctcaggagga 1390
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308202973 gccctctgcaccgccaccagcttccaatcttctgtccctctcaggagga 308203021
Score = 549 bits (277), Expect = e-153
Identities = 332/356 (93%), Gaps = 1/356 (0%)
Strand = Plus / Plus
Query: 1 ctcgggtgctgccgtcagagctgcaggaggagaggtgggcggcccttcccctgagccctg 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308197101 ctcgggtgctgctggcagagctgcaggaggagaggtgggcggcccttcccctgagccctg 308197160
Query: 61 ggggcccggggctgctggaggggaaatgaggcccctcccggggcagcactgaggtcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308197161 ggggcccggggctgctggaggggaaatgaggcccctcccggggcagcactgaggtcagat 308197220
Query: 121 gctccctgaagannnnnnnnnnnnnnnnnnnnn-aaggaagaggccgtccccaccagcca 179
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 308197221 gctccctgaagagggcggggcgggggggggggggaaggaagaggccgtccccaccagcca 308197280
Query: 180 gaaaaacagggccagaggtgaccgtgggcggccgcagccttataagagcagaggggatct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308197281 gaaaaacagggccagaggtgaccgtgggcggccgcagccttataagagcagaggggatct 308197340
Query: 240 ttcctcggcaaaggtcccagcgatggacacacgcggagtggccgcggccatgaggcccct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308197341 ttcctcggcaaaggtcccagcgatggacacacgcggagtggccgcggccatgaggcccct 308197400
Query: 300 ggtcctgctcgttgccttcctgtgcaccgcagccccagccctcgacacctgtccag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308197401 ggtcctgctcgttgccttcctgtgcaccgcagccccagccctcgacacctgtccag 308197456
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 850 ggaaccaatgagctccgggtggacctcgtggacttcgagggcaaccaccagtttgccaag 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308201915 ggaaccaatgagctccgggtggacctcgtggacttcgagggcaaccaccagtttgccaag 308201974
Query: 910 tacaggtccttccaggtggcaggcgaggcagagaagtacatgctggtcctgggagccttc 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308201975 tacaggtccttccaggtggcaggcgaggcagagaagtacatgctggtcctgggagccttc 308202034
Query: 970 gtagagggcaatgcaggtg 988
|||||||||||||||||||
Sbjct: 308202035 gtagagggcaatgcaggtg 308202053
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 590 caggacctcggacctgcaaggagctgctgaccagggggcactttctgagcggctggcaca 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308200675 caggacctcggacctgcaaggagctgctgaccagggggcactttctgagcggctggcaca 308200734
Query: 650 ccatctacctgccggactgccagcccctgacggtgctgtgtgacatggacacggatggcg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308200735 ccatctacctgccggactgccagcccctgacggtgctgtgtgacatggacacggatggcg 308200794
Query: 710 gggggtggaccgt 722
|||||||||||||
Sbjct: 308200795 gggggtggaccgt 308200807
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 590 caggacctcggacctgcaaggagctgctgaccagggggcactttctgagcggctggcaca 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308219487 caggacctcggacctgcaaggagctgctgaccagggggcactttctgagcggctggcaca 308219428
Query: 650 ccatctacctgccggactgccagcccctgacggtgctgtgtgacatggacacggatggcg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308219427 ccatctacctgccggactgccagcccctgacggtgctgtgtgacatggacacggatggcg 308219368
Query: 710 gggggtggaccgt 722
|||||||||||||
Sbjct: 308219367 gggggtggaccgt 308219355
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 721 gttttccagcgcaggagcgacgggtcggtggacttctaccgggactgggccgcgtacaag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308200977 gttttccagcgcaggagcgacgggtcggtggacttctaccgggactgggccgcgtacaag 308201036
Query: 781 cggggcttcggcagtcagctgggagagttctggctggggaacgaccacatccacgccctg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308201037 cggggcttcggcagtcagctgggagagttctggctggggaacgaccacatccacgccctg 308201096
Query: 841 acggcccaggg 851
|||||||||||
Sbjct: 308201097 acggcccaggg 308201107
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 721 gttttccagcgcaggagcgacgggtcggtggacttctaccgggactgggccgcgtacaag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308219185 gttttccagcgcaggagcgacgggtcggtggacttctaccgggactgggccgcgtacaag 308219126
Query: 781 cggggcttcggcagtcagctgggagagttctggctggggaacgaccacatccacgccctg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308219125 cggggcttcggcagtcagctgggagagttctggctggggaacgaccacatccacgccctg 308219066
Query: 841 acggcccaggg 851
|||||||||||
Sbjct: 308219065 acggcccaggg 308219055
Score = 236 bits (119), Expect = 3e-59
Identities = 134/139 (96%)
Strand = Plus / Minus
Query: 850 ggaaccaatgagctccgggtggacctcgtggacttcgagggcaaccaccagtttgccaag 909
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308218235 ggaaccagtgagctccgggtggacctcgtggacttcgagggcaaccaccagtttgccaag 308218176
Query: 910 tacaggtccttccaggtggcaggcgaggcagagaagtacatgctggtcctgggagccttc 969
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 308218175 tacaggtccttccaggtggcaggcgaggcagagaagtacaagctggtcctgggaggcttc 308218116
Query: 970 gtagagggcaatgcaggtg 988
| ||||||||||||||||
Sbjct: 308218115 ctggagggcaatgcaggtg 308218097
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 353 cagaggtcaaggtggtgggtctggagggctcggacaagctctccatcctccgaggctgcc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308197794 cagaggtcaaggtggtgggtctggagggctcggacaagctctccatcctccgaggctgcc 308197853
Query: 413 cggggctgcctggagccgcagggcccaagggagaggcgggcgccgatggaccgaaggg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308197854 cggggctgcctggagccgcagggcccaagggagaggcgggcgccgatggaccgaaggg 308197911
Score = 202 bits (102), Expect = 4e-49
Identities = 114/118 (96%)
Strand = Plus / Minus
Query: 353 cagaggtcaaggtggtgggtctggagggctcggacaagctctccatcctccgaggctgcc 412
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 308222605 cagaggtcaaggtggtgggtctggagggctcggacaagctctccatccttcgaggctgcc 308222546
Query: 413 cggggctgcctggagccgcagggcccaagggagaggcgggcgccgatggaccgaaggg 470
||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||
Sbjct: 308222545 cggggctgcctggagccaccgggcccaagggagaggcgggcgccaatggaccgaaggg 308222488
Score = 117 bits (59), Expect = 2e-23
Identities = 125/147 (85%)
Strand = Plus / Minus
Query: 1071 gtaccagggagcctggtggtacaagagctgtcacgtgtccaacctgaacggccgctacct 1130
|||||| || |||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct: 308217169 gtaccacggcgcctggtggtacaacgcctgccactcctccaacctgaacggccgctacct 308217110
Query: 1131 cgggggctcgcatgggagctttgcaaacggcgtcaactggagttcggggaaagggtacaa 1190
| |||| ||| |||| ||| ||||||||||||||||| ||||||| |||||||||
Sbjct: 308217109 ccggggactgcacaccagctatgccaacggcgtcaactggaggtcggggagagggtacaa 308217050
Query: 1191 ctacagctacaaggtgtcggagatgaa 1217
|||||||||| ||||||||||||||||
Sbjct: 308217049 ctacagctaccaggtgtcggagatgaa 308217023
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 469 ggaggacaaggccctcccggagcccctggggagccaggaccccccgggcccaaagg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308198495 ggaggacaaggccctcccggagcccctggggagccaggaccccccgggcccaaagg 308198550
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 522 aggagaccgaggggagaagggcgagcctggaccgaaagg 560
|||||||||||||||||||||||||||||||||||||||
Sbjct: 308198906 aggagaccgaggggagaagggcgagcctggaccgaaagg 308198944
Score = 71.9 bits (36), Expect = 9e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 558 aggagagtcttgggaacccgagcagtgtctcacagg 593
||||||||||||||||||||||||||||||||||||
Sbjct: 308200178 aggagagtcttgggaacccgagcagtgtctcacagg 308200213
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,191,907
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 15
Length of query: 1390
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1369
Effective length of database: 2,808,413,156
Effective search space: 3844717610564
Effective search space used: 3844717610564
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)