Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012282
(1027 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029923.1| LIM domain transcription factor LMO4 [Bos ta... 359 2e-99
Alignment gi|NP_001069363.1| rhombotin-1 [Bos taurus]. 164 1e-40
Alignment gi|NP_001039802.1| LIM domain only protein 3 [Bos taurus]. 159 4e-39
Alignment gi|NP_001069820.1| rhombotin-2 [Bos taurus]. 132 4e-31
Alignment gi|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus]. 124 2e-28
Alignment gi|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus]. 121 9e-28
Alignment gi|XP_002694211.1| PREDICTED: LIM homeobox 4 [Bos taurus]. 121 9e-28
Alignment gi|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus]. 120 1e-27
Alignment gi|XP_002691627.1| PREDICTED: LIM homeobox protein 2-like [Bos ... 120 1e-27
Alignment gi|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus]. 116 4e-26
>ref|NP_001029923.1| LIM domain transcription factor LMO4 [Bos taurus].
Length = 165
Score = 359 bits (921), Expect = 2e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_001069363.1| rhombotin-1 [Bos taurus].
Length = 156
Score = 164 bits (415), Expect = 1e-40
Identities = 69/132 (52%), Positives = 90/132 (68%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDQYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMD 141
Query: 790 RPTALINGHLNS 825
+NG +S
Sbjct: 142 YEEGQLNGTFDS 153
>ref|NP_001039802.1| LIM domain only protein 3 [Bos taurus].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 790 RPTALI 807
L+
Sbjct: 131 YEEGLM 136
>ref|NP_001069820.1| rhombotin-2 [Bos taurus].
Length = 158
Score = 132 bits (333), Expect = 4e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
>ref|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus].
Length = 378
Score = 124 bits (310), Expect = 2e-28
Identities = 60/123 (48%), Positives = 74/123 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
CAGCGGKIADR+ L A+D WH RCLKC C+ L + +C+ K G I C+ DY R F
Sbjct: 52 CAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRFS 110
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRP 795
C+ C I ASE+VMRA+ +VYHL CFTCSTC L GD F + ++C
Sbjct: 111 VQ-RCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 169
Query: 796 TAL 804
T L
Sbjct: 170 TLL 172
>ref|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus].
Length = 390
Score = 121 bits (304), Expect = 9e-28
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = +1
Query: 433 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLF 612
+CAGC I D+F+L +D +WHS CLKC+ CQ QL D C++++G + C+ D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 613 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHD 789
G C+AC Q IP +++V +AQ VYHL CF C C +L GD F+ + +G L C+ D
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKED 143
Query: 790 RPTALIN 810
TA N
Sbjct: 144 YETAKQN 150
>ref|XP_002694211.1| PREDICTED: LIM homeobox 4 [Bos taurus].
Length = 390
Score = 121 bits (304), Expect = 9e-28
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = +1
Query: 433 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLF 612
+CAGC I D+F+L +D +WHS CLKC+ CQ QL D C++++G + C+ D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 613 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHD 789
G C+AC Q IP +++V +AQ VY
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012282
(1027 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867313.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_867305.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_867295.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_867288.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_867279.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_537086.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_851199.1| PREDICTED: similar to Rhombotin-1 (Cysteine-ric... 164 2e-40
Alignment gi|XP_866591.1| PREDICTED: similar to LIM-only protein 3 (Neuro... 159 4e-39
Alignment gi|XP_866578.1| PREDICTED: similar to LIM-only protein 3 (Neuro... 159 4e-39
Alignment gi|XP_852933.1| PREDICTED: similar to LIM-only protein 3 (Neuro... 159 4e-39
>ref|XP_867313.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 6
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_867305.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 5
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRHL CF C C +L GD F+ + +G L C+ D
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKED 143
Query: 790 RPTALIN 810
TA N
Sbjct: 144 YETAKQN 150
>ref|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus].
Length = 406
Score = 120 bits (302), Expect = 1e-27
Identities = 56/115 (48%), Positives = 72/115 (62%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
CAGCGGKI+DR+ L A+D WH RCLKC C+ L + +C++K G I C+ DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNL-ESELTCFSKDGSIYCKEDYYRRFS 111
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 780
C+ C I ASE+VMRA+ VYHL CFTC+TC L GD F + ++C
Sbjct: 112 VQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYC 165
>ref|XP_002691627.1| PREDICTED: LIM homeobox protein 2-like [Bos taurus].
Length = 406
Score = 120 bits (302), Expect = 1e-27
Identities = 56/115 (48%), Positives = 72/115 (62%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
CAGCGGKI+DR+ L A+D WH RCLKC C+ L + +C++K G I C+ DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNL-ESELTCFSKDGSIYCKEDYYRRFS 111
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 780
C+ C I ASE+VMRA+ VYHL CFTC+TC L GD F + ++C
Sbjct: 112 VQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYC 165
>ref|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus].
Length = 403
Score = 116 bits (290), Expect = 4e-26
Identities = 54/123 (43%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
CAGC I DRF+L A+D +WHS+CLKCS C A L + C+++ + C++D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGS-LFCEHDR 792
C+AC IP +++V RAQ VYHL CF C C+ +L GD F+ + S L C+ D
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 793 PTA 801
TA
Sbjct: 151 ETA 153
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,565,061
Number of extensions: 920522
Number of successful extensions: 5504
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 5350
Number of HSP's successfully gapped: 71
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
NDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_867295.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 4
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_867288.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 3
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_867279.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 2
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_537086.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 1
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_851199.1| PREDICTED: similar to Rhombotin-1 (Cysteine-rich protein TTG-1)
(T-cell translocation protein 1) (LIM-only protein 1)
isoform 1 [Canis familiaris].
Length = 156
Score = 164 bits (414), Expect = 2e-40
Identities = 69/132 (52%), Positives = 89/132 (67%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMD 141
Query: 790 RPTALINGHLNS 825
+NG S
Sbjct: 142 YEEGQLNGTFES 153
>ref|XP_866591.1| PREDICTED: similar to LIM-only protein 3 (Neuronal specific
transcription factor DAT1) isoform 8 [Canis familiaris].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 790 RPTALI 807
L+
Sbjct: 131 YEEGLM 136
>ref|XP_866578.1| PREDICTED: similar to LIM-only protein 3 (Neuronal specific
transcription factor DAT1) isoform 7 [Canis familiaris].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 790 RPTALI 807
L+
Sbjct: 131 YEEGLM 136
>ref|XP_852933.1| PREDICTED: similar to LIM-only protein 3 (Neuronal specific
transcription factor DAT1) isoform 2 [Canis familiaris].
Length = 156
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 790 RPTALI 807
L+
Sbjct: 142 YEEGLM 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,704,075
Number of extensions: 927537
Number of successful extensions: 5589
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 5399
Number of HSP's successfully gapped: 96
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012282
(1027 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106156.1| LIM domain transcription factor LMO4 [Sus sc... 359 2e-99
Alignment gi|NP_001106526.1| rhombotin-1 [Sus scrofa]. 160 1e-39
Alignment gi|NP_001106155.1| LIM domain only protein 3 [Sus scrofa]. 159 2e-39
Alignment gi|XP_003122931.1| PREDICTED: hypothetical protein LOC100512825... 132 2e-31
Alignment gi|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform... 124 1e-28
Alignment gi|XP_003130643.2| PREDICTED: LIM/homeobox protein Lhx9 isoform... 124 1e-28
Alignment gi|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [S... 121 5e-28
Alignment gi|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa]. 120 9e-28
Alignment gi|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa]. 110 2e-24
Alignment gi|XP_003132949.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox... 109 2e-24
>ref|NP_001106156.1| LIM domain transcription factor LMO4 [Sus scrofa].
Length = 165
Score = 359 bits (921), Expect = 2e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_001106526.1| rhombotin-1 [Sus scrofa].
Length = 156
Score = 160 bits (405), Expect = 1e-39
Identities = 67/128 (52%), Positives = 87/128 (67%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQLD 141
Query: 790 RPTALING 813
+ G
Sbjct: 142 YEEGQLTG 149
>ref|NP_001106155.1| LIM domain only protein 3 [Sus scrofa].
Length = 145
Score = 159 bits (402), Expect = 2e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 790 RPTALI 807
L+
Sbjct: 131 YEEGLM 136
>ref|XP_003122931.1| PREDICTED: hypothetical protein LOC100512825 [Sus scrofa].
Length = 476
Score = 132 bits (333), Expect = 2e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 348 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 407
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 408 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 465
>ref|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sus scrofa].
Length = 388
Score = 124 bits (310), Expect = 1e-28
Identities = 60/123 (48%), Positives = 74/123 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
CAGCGGKIADR+ L A+D WH RCLKC C+ L + +C+ K G I C+ DY R F
Sbjct: 62 CAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRFS 120
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRP 795
C+ C I ASE+VMRA+ +VYHL CFTCSTC L GD F + ++C
Sbjct: 121 VQ-RCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
Query: 796 TAL 804
T L
Sbjct: 180 TLL 182
>ref|XP_003130643.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sus scrofa].
Length = 399
Score = 124 bits (310), Expect = 1e-28
Identities = 60/123 (48%), Positives = 74/123 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
CAGCGGKIADR+ L A+D WH RCLKC C+ L + +C+ K G I C+ DY R F
Sbjct: 71 CAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRFS 129
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRP 795
C+ C I ASE+VMRA+ +VYHL CFTCSTC L GD F + ++C
Sbjct: 130 VQ-RCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
Query: 796 TAL 804
T L
Sbjct: 189 TLL 191
>ref|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [Sus scrofa].
Length = 390
Score = 121 bits (304), Expect = 5e-28
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = +1
Query: 433 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLF 612
+CAGC I D+F+L +D +WHS CLKC+ CQ QL D C++++G + C+ D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 613 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHD 789
G C+AC Q IP +++V +AQ VYHL CF C C +L GD F+ + +G L C+ D
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLPCFACIICNRQLATGDEFYLMEDGRLVCKED 143
Query: 790 RPTALIN 810
TA N
Sbjct: 144 YETAKQN 150
>ref|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa].
Length = 406
Score = 120 bits (302), Expect = 9e-28
Identities = 56/115 (48%), Positives = 72/115 (62%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
CAGCGGKI+DR+ L A+D WH RCLKC C+ L + +C++K G I C+ DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNL-ESELTCFSKDGSIYCKEDYYRRFS 111
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 780
C+ C I ASE+VMRA+ VYHL CFTC+TC L GD F + ++C
Sbjct: 112 VQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYC 165
>ref|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa].
Length = 295
Score = 110 bits (274), Expect = 2e-24
Identities = 51/115 (44%), Positives = 68/115 (59%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
C CG +I D++LL D WH RCL CS C+ LG TSCY K I C+ DY R +G
Sbjct: 14 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 72
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 780
CS CG+ I +++ V RA+GNVYHL CF C +C+ +L G+ F + + C
Sbjct: 73 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLC 125
>ref|XP_003132949.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like [Sus
scrofa].
Length = 402
Score = 109 bits (273), Expect = 2e-24
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
CAGC I DRFLL +D WH +C++C C L + C+++ G + C+ND+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECXTNLSE---KCFSREGKLYCKNDFFRRFG 61
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLF-CEHD- 789
C+ C Q I S+LV +A+ V+HL CFTC C +L G+ + I+ + F C+ D
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Query: 790 -RPTALINGHLNSLQS 834
++L G LNS+ S
Sbjct: 120 LSSSSLKEGSLNSVSS 135
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,377,641
Number of extensions: 597149
Number of successful extensions: 3538
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 3468
Number of HSP's successfully gapped: 37
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012282
(1027 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155242.1| LIM domain transcription factor LMO4 [Mus mu... 359 2e-99
Alignment gi|NP_001155241.1| LIM domain transcription factor LMO4 [Mus mu... 359 2e-99
Alignment gi|NP_034853.1| LIM domain transcription factor LMO4 [Mus muscu... 359 2e-99
Alignment gi|NP_476514.1| rhombotin-1 [Mus musculus]. 163 2e-40
Alignment gi|NP_997105.1| LIM domain only protein 3 [Mus musculus]. 159 3e-39
Alignment gi|NP_001135808.1| rhombotin-2 isoform 3 [Mus musculus]. 132 3e-31
Alignment gi|NP_001135807.1| rhombotin-2 isoform 2 [Mus musculus]. 132 3e-31
Alignment gi|NP_032531.2| rhombotin-2 isoform 1 [Mus musculus]. 132 3e-31
Alignment gi|NP_001135809.1| rhombotin-2 isoform 3 [Mus musculus]. 132 3e-31
Alignment gi|NP_001036042.1| LIM/homeobox protein Lhx9 isoform c [Mus mus... 123 2e-28
>ref|NP_001155242.1| LIM domain transcription factor LMO4 [Mus musculus].
Length = 165
Score = 359 bits (921), Expect = 2e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_001155241.1| LIM domain transcription factor LMO4 [Mus musculus].
Length = 165
Score = 359 bits (921), Expect = 2e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_034853.1| LIM domain transcription factor LMO4 [Mus musculus].
Length = 165
Score = 359 bits (921), Expect = 2e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_476514.1| rhombotin-1 [Mus musculus].
Length = 156
Score = 163 bits (412), Expect = 2e-40
Identities = 69/132 (52%), Positives = 89/132 (67%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQVD 141
Query: 790 RPTALINGHLNS 825
+NG S
Sbjct: 142 YEEGHLNGTFES 153
>ref|NP_997105.1| LIM domain only protein 3 [Mus musculus].
Length = 145
Score = 159 bits (402), Expect = 3e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 790 RPTALI 807
L+
Sbjct: 131 YEEGLM 136
>ref|NP_001135808.1| rhombotin-2 isoform 3 [Mus musculus].
Length = 158
Score = 132 bits (333), Expect = 3e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
>ref|NP_001135807.1| rhombotin-2 isoform 2 [Mus musculus].
Length = 220
Score = 132 bits (333), Expect = 3e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 92 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 151
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 152 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 209
>ref|NP_032531.2| rhombotin-2 isoform 1 [Mus musculus].
Length = 228
Score = 132 bits (333), Expect = 3e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 100 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 159
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 160 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 217
>ref|NP_001135809.1| rhombotin-2 isoform 3 [Mus musculus].
Length = 158
Score = 132 bits (333), Expect = 3e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
>ref|NP_001036042.1| LIM/homeobox protein Lhx9 isoform c [Mus musculus].
Length = 397
Score = 123 bits (309), Expect = 2e-28
Identities = 66/151 (43%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Frame = +1
Query: 361 KQTMVNPGSSSQPPPVTAGSLSWKR---CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQ 531
K T +N + PP LS ++ CAGCGGKI+DR+ L A+D WH RCLKC C+
Sbjct: 49 KGTQLNGRDAGMPP------LSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECK 102
Query: 532 AQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 711
L + +C+ K G I C+ DY R F C+ C I ASE+VMRA+ +VYHL CFT
Sbjct: 103 LAL-ESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEMVMRARDSVYHLSCFT 160
Query: 712 CSTCRNRLVPGDRFHYINGSLFCEHDRPTAL 804
CSTC L GD F + ++C T L
Sbjct: 161 CSTCNKTLTTGDHFGMKDSLVYCRAHFETLL 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,694,094
Number of extensions: 765358
Number of successful extensions: 4476
Number of sequences better than 1.0e-05: 67
Number of HSP's gapped: 4292
Number of HSP's successfully gapped: 89
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012282
(1027 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006760.1| LIM domain transcription factor LMO4 [Homo sapi... 359 3e-99
Alignment gi|NP_002306.1| rhombotin-1 [Homo sapiens]. 164 2e-40
Alignment gi|NP_001230541.1| LIM domain only protein 3 isoform 3 [Homo sa... 159 4e-39
Alignment gi|NP_001230540.1| LIM domain only protein 3 isoform 2 [Homo sa... 159 4e-39
Alignment gi|NP_001230539.1| LIM domain only protein 3 isoform 1 [Homo sa... 159 4e-39
Alignment gi|NP_001230538.1| LIM domain only protein 3 isoform 1 [Homo sa... 159 4e-39
Alignment gi|NP_001001395.1| LIM domain only protein 3 isoform 1 [Homo sa... 159 4e-39
Alignment gi|NP_061110.2| LIM domain only protein 3 isoform 1 [Homo sapie... 159 4e-39
Alignment gi|NP_001135788.1| rhombotin-2 isoform 2 [Homo sapiens]. 132 4e-31
Alignment gi|NP_001135787.1| rhombotin-2 isoform 2 [Homo sapiens]. 132 4e-31
>ref|NP_006760.1| LIM domain transcription factor LMO4 [Homo sapiens].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +1
Query: 370 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 549
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 550 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 729
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 730 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 864
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_002306.1| rhombotin-1 [Homo sapiens].
Length = 156
Score = 164 bits (414), Expect = 2e-40
Identities = 69/132 (52%), Positives = 89/132 (67%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMD 141
Query: 790 RPTALINGHLNS 825
+NG S
Sbjct: 142 YEEGQLNGTFES 153
>ref|NP_001230541.1| LIM domain only protein 3 isoform 3 [Homo sapiens].
Length = 163
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 29 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 88
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 89 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 148
Query: 790 RPTALI 807
L+
Sbjct: 149 YEEGLM 154
>ref|NP_001230540.1| LIM domain only protein 3 isoform 2 [Homo sapiens].
Length = 156
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 790 RPTALI 807
L+
Sbjct: 142 YEEGLM 147
>ref|NP_001230539.1| LIM domain only protein 3 isoform 1 [Homo sapiens].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 790 RPTALI 807
L+
Sbjct: 131 YEEGLM 136
>ref|NP_001230538.1| LIM domain only protein 3 isoform 1 [Homo sapiens].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 790 RPTALI 807
L+
Sbjct: 131 YEEGLM 136
>ref|NP_001001395.1| LIM domain only protein 3 isoform 1 [Homo sapiens].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 790 RPTALI 807
L+
Sbjct: 131 YEEGLM 136
>ref|NP_061110.2| LIM domain only protein 3 isoform 1 [Homo sapiens].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +1
Query: 430 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 609
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 610 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 790 RPTALI 807
L+
Sbjct: 131 YEEGLM 136
>ref|NP_001135788.1| rhombotin-2 isoform 2 [Homo sapiens].
Length = 158
Score = 132 bits (333), Expect = 4e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
>ref|NP_001135787.1| rhombotin-2 isoform 2 [Homo sapiens].
Length = 158
Score = 132 bits (333), Expect = 4e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +1
Query: 436 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 615
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 616 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 789
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,090,351
Number of extensions: 914172
Number of successful extensions: 5592
Number of sequences better than 1.0e-05: 94
Number of HSP's gapped: 5396
Number of HSP's successfully gapped: 126
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012282
(1027 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 486 e-134
>Sscrofa_Chr04
|| Length = 143465943
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 363 gcagaccatggtgaacccgggcagcagctcccagccgcccccggtgacggccggctccct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141353764 gcagaccatggtgaacccgggcagcagctcccagccgcccccggtgacggccggctccct 141353705
Query: 423 ctcctggaagcggtgcgcaggctgcgggggcaagatcgcggaccgctttctgctctatgc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141353704 ctcctggaagcggtgcgcaggctgcgggggcaagatcgcggaccgctttctgctctatgc 141353645
Query: 483 catggacagctactggcacagccggtgcctcaagtgctcctgctgccaggcgcagctggg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141353644 catggacagctactggcacagccggtgcctcaagtgctcctgctgccaggcgcagctggg 141353585
Query: 543 cgacatcggcacgtcctgttacaccaagagcggcatgatcctttgcagaaatgactacat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141353584 cgacatcggcacgtcctgttacaccaagagcggcatgatcctttgcagaaatgactacat 141353525
Query: 603 taggt 607
|||||
Sbjct: 141353524 taggt 141353520
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 701 agtgttttacatgctctacctgccggaatcgcctggtcccaggagatcggtttcactaca 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141346957 agtgttttacatgctctacctgccggaatcgcctggtcccaggagatcggtttcactaca 141346898
Query: 761 tcaatggcagtttattttgtgaacatgatagacctacagctctcatcaatggccatttga 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141346897 tcaatggcagtttattttgtgaacatgatagacctacagctctcatcaatggccatttga 141346838
Query: 821 attcacttcagagcaatccactactgccagaccagaaggt 860
||||||||||||||||||||||||||||||||||||||||
Sbjct: 141346837 attcacttcagagcaatccactactgccagaccagaaggt 141346798
Score = 291 bits (147), Expect = 4e-76
Identities = 165/171 (96%)
Strand = Plus / Minus
Query: 857 aggtctgctaaaaggtcagagtgatgcaaaatgcgtgccttcatctcagattttgttcat 916
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 141342310 aggtctgctaaaaggtcagagtgatgcagaatgcgtgccttcatctcagattttgttcat 141342251
Query: 917 cgcaggtggatcccctgtgtcttcagtagacaagtcacctttgtagcaccagtgccagct 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141342250 cgcaggtggatcccctgtgtcttcagtagacaagtcacctttgtagcaccagtgccagct 141342191
Query: 977 ccatggcattgcaccctttttaatcttgattgcccttcccgcattaattgg 1027
||||| ||||||||| | |||| |||||||||||||||||||||| |||||
Sbjct: 141342190 ccatgccattgcaccttctttagtcttgattgcccttcccgcatttattgg 141342140
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 46 gccgcggcccgagggctcctgcggctgctcgcgcccagccggacgccgaggagcacgacc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141356837 gccgcggcccgagggctcctgcggctgctcgcgcccagccggacgccgaggagcacgacc 141356778
Query: 106 cggaccgagacggacacttctgctccccgccgcctgccactgacgcgggccccccagccc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141356777 cggaccgagacggacacttctgctccccgccgcctgccactgacgcgggccccccagccc 141356718
Query: 166 agccccagagccgcgcgtt 184
|||||||||||||||||||
Sbjct: 141356717 agccccagagccgcgcgtt 141356699
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Minus
Query: 604 aggttatttgggaatagcggtgcttgcagtgcttgtggacagtctattcctgcgagcgag 663
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 141347458 aggttatttgggaatagcggtgcttgcagtgcttgtggacagtccattcctgcgagcgag 141347399
Query: 664 ctggtcatgcgggcccaaggcaatgtgtatcatctgaag 702
|||||||||||||||||||||||||||||||||||||||
Sbjct: 141347398 ctggtcatgcgggcccaaggcaatgtgtatcatctgaag 141347360
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 281 ggcgccccttcctcggaagccgagcggcttcgctcgcatttcgccgccgccgcctcgcgc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141356599 ggcgccccttcctcggaagccgagcggcttcgctcgcatttcgccgccgccgcctcgcgc 141356540
Query: 341 agtcttgcaatataggggaaaagcag 366
||||||||||||||||||||||||||
Sbjct: 141356539 agtcttgcaatataggggaaaagcag 141356514
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,573,121
Number of extensions: 136
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 6
Length of query: 1027
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1006
Effective length of database: 2,808,413,156
Effective search space: 2825263634936
Effective search space used: 2825263634936
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)