Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012291
(1007 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029923.1| LIM domain transcription factor LMO4 [Bos ta... 359 2e-99
Alignment gi|NP_001069363.1| rhombotin-1 [Bos taurus]. 164 1e-40
Alignment gi|NP_001039802.1| LIM domain only protein 3 [Bos taurus]. 159 4e-39
Alignment gi|NP_001069820.1| rhombotin-2 [Bos taurus]. 132 4e-31
Alignment gi|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus]. 124 1e-28
Alignment gi|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus]. 121 8e-28
Alignment gi|XP_002694211.1| PREDICTED: LIM homeobox 4 [Bos taurus]. 121 8e-28
Alignment gi|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus]. 120 1e-27
Alignment gi|XP_002691627.1| PREDICTED: LIM homeobox protein 2-like [Bos ... 120 1e-27
Alignment gi|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus]. 116 4e-26
>ref|NP_001029923.1| LIM domain transcription factor LMO4 [Bos taurus].
Length = 165
Score = 359 bits (921), Expect = 2e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_001069363.1| rhombotin-1 [Bos taurus].
Length = 156
Score = 164 bits (415), Expect = 1e-40
Identities = 69/132 (52%), Positives = 90/132 (68%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDQYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMD 141
Query: 518 RPTALINGHLNS 553
+NG +S
Sbjct: 142 YEEGQLNGTFDS 153
>ref|NP_001039802.1| LIM domain only protein 3 [Bos taurus].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 518 RPTALI 535
L+
Sbjct: 131 YEEGLM 136
>ref|NP_001069820.1| rhombotin-2 [Bos taurus].
Length = 158
Score = 132 bits (333), Expect = 4e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
>ref|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus].
Length = 378
Score = 124 bits (311), Expect = 1e-28
Identities = 68/162 (41%), Positives = 87/162 (53%)
Frame = +2
Query: 47 LES*EELVAPEQSLRKTMVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYW 226
+E E E L K G + PP++ + CAGCGGKIADR+ L A+D W
Sbjct: 15 MEEMERRSKSEARLAKGAQLNGRDAGMPPLSPEKPAL--CAGCGGKIADRYYLLAVDKQW 72
Query: 227 HSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRA 406
H RCLKC C+ L + +C+ K G I C+ DY R F C+ C I ASE+VMRA
Sbjct: 73 HLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEMVMRA 130
Query: 407 QGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTAL 532
+ +VYHL CFTCSTC L GD F + ++C T L
Sbjct: 131 RDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLL 172
>ref|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus].
Length = 390
Score = 121 bits (304), Expect = 8e-28
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = +2
Query: 161 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLF 340
+CAGC I D+F+L +D +WHS CLKC+ CQ QL D C++++G + C+ D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 341 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHD 517
G C+AC Q IP +++V +AQ VYHL CF C C +L GD F+ + +G L C+ D
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKED 143
Query: 518 RPTALIN 538
TA N
Sbjct: 144 YETAKQN 150
>ref|XP_002694211.1| PREDICTED: LIM homeobox 4 [Bos taurus].
Length = 390
Score = 121 bits (304), Expect = 8e-28
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = +2
Query: 161 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLF 340
+CAGC I D+F+L +D +WHS CLKC+ CQ QL D C++++G + C+ D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 341 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHD 517
G C+AC Q IP +++V +AQ VYHL CF C C +L GD F+ + +G L C+ D
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKED 143
Query: 518 RPTALIN 538
TA N
Sbjct: 144 YETAKQN 150
>ref|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus].
Length = 406
Score = 120 bits (302), Expect = 1e-27
Identities = 56/115 (48%), Positives = 72/115 (62%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
CAGCGGKI+DR+ L A+D WH RCLKC C+ L + +C++K G I C+ DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNL-ESELTCFSKDGSIYCKEDYYRRFS 111
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 508
C+ C I ASE+VMRA+ VYHL CFTC+TC L GD F + ++C
Sbjct: 112 VQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYC 165
>ref|XP_002691627.1| PREDICTED: LIM homeobox protein 2-like [Bos taurus].
Length = 406
Score = 120 bits (302), Expect = 1e-27
Identities = 56/115 (48%), Positives = 72/115 (62%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
CAGCGGKI+DR+ L A+D WH RCLKC C+ L + +C++K G I C+ DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNL-ESELTCFSKDGSIYCKEDYYRRFS 111
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 508
C+ C I ASE+VMRA+ VYHL CFTC+TC L GD F + ++C
Sbjct: 112 VQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYC 165
>ref|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus].
Length = 403
Score = 116 bits (290), Expect = 4e-26
Identities = 54/123 (43%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
CAGC I DRF+L A+D +WHS+CLKCS C A L + C+++ + C++D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGS-LFCEHDR 520
C+AC IP +++V RAQ VYHL CF C C+ +L GD F+ + S L C+ D
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 521 PTA 529
TA
Sbjct: 151 ETA 153
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,765,591
Number of extensions: 975509
Number of successful extensions: 4483
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 4338
Number of HSP's successfully gapped: 73
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012291
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012291
(1007 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867313.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_867305.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_867295.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_867288.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_867279.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_537086.1| PREDICTED: similar to LIM domain only 4 (predic... 359 3e-99
Alignment gi|XP_851199.1| PREDICTED: similar to Rhombotin-1 (Cysteine-ric... 164 2e-40
Alignment gi|XP_866591.1| PREDICTED: similar to LIM-only protein 3 (Neuro... 159 4e-39
Alignment gi|XP_866578.1| PREDICTED: similar to LIM-only protein 3 (Neuro... 159 4e-39
Alignment gi|XP_852933.1| PREDICTED: similar to LIM-only protein 3 (Neuro... 159 4e-39
>ref|XP_867313.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 6
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_867305.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 5
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_867295.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 4
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_867288.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 3
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_867279.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 2
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_537086.1| PREDICTED: similar to LIM domain only 4 (predicted) isoform 1
[Canis familiaris].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|XP_851199.1| PREDICTED: similar to Rhombotin-1 (Cysteine-rich protein TTG-1)
(T-cell translocation protein 1) (LIM-only protein 1)
isoform 1 [Canis familiaris].
Length = 156
Score = 164 bits (414), Expect = 2e-40
Identities = 69/132 (52%), Positives = 89/132 (67%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMD 141
Query: 518 RPTALINGHLNS 553
+NG S
Sbjct: 142 YEEGQLNGTFES 153
>ref|XP_866591.1| PREDICTED: similar to LIM-only protein 3 (Neuronal specific
transcription factor DAT1) isoform 8 [Canis familiaris].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 518 RPTALI 535
L+
Sbjct: 131 YEEGLM 136
>ref|XP_866578.1| PREDICTED: similar to LIM-only protein 3 (Neuronal specific
transcription factor DAT1) isoform 7 [Canis familiaris].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 518 RPTALI 535
L+
Sbjct: 131 YEEGLM 136
>ref|XP_852933.1| PREDICTED: similar to LIM-only protein 3 (Neuronal specific
transcription factor DAT1) isoform 2 [Canis familiaris].
Length = 156
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 518 RPTALI 535
L+
Sbjct: 142 YEEGLM 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,019,736
Number of extensions: 990598
Number of successful extensions: 4452
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 4267
Number of HSP's successfully gapped: 96
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012291
(1007 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106156.1| LIM domain transcription factor LMO4 [Sus sc... 359 2e-99
Alignment gi|NP_001106526.1| rhombotin-1 [Sus scrofa]. 160 1e-39
Alignment gi|NP_001106155.1| LIM domain only protein 3 [Sus scrofa]. 159 2e-39
Alignment gi|XP_003122931.1| PREDICTED: hypothetical protein LOC100512825... 132 2e-31
Alignment gi|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform... 124 8e-29
Alignment gi|XP_003130643.2| PREDICTED: LIM/homeobox protein Lhx9 isoform... 124 8e-29
Alignment gi|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [S... 121 5e-28
Alignment gi|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa]. 120 9e-28
Alignment gi|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa]. 110 2e-24
Alignment gi|XP_003132949.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox... 109 2e-24
>ref|NP_001106156.1| LIM domain transcription factor LMO4 [Sus scrofa].
Length = 165
Score = 359 bits (921), Expect = 2e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_001106526.1| rhombotin-1 [Sus scrofa].
Length = 156
Score = 160 bits (405), Expect = 1e-39
Identities = 67/128 (52%), Positives = 87/128 (67%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQLD 141
Query: 518 RPTALING 541
+ G
Sbjct: 142 YEEGQLTG 149
>ref|NP_001106155.1| LIM domain only protein 3 [Sus scrofa].
Length = 145
Score = 159 bits (402), Expect = 2e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 518 RPTALI 535
L+
Sbjct: 131 YEEGLM 136
>ref|XP_003122931.1| PREDICTED: hypothetical protein LOC100512825 [Sus scrofa].
Length = 476
Score = 132 bits (333), Expect = 2e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 348 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 407
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 408 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 465
>ref|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sus scrofa].
Length = 388
Score = 124 bits (311), Expect = 8e-29
Identities = 68/162 (41%), Positives = 87/162 (53%)
Frame = +2
Query: 47 LES*EELVAPEQSLRKTMVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYW 226
+E E E L K G + PP++ + CAGCGGKIADR+ L A+D W
Sbjct: 25 MEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPAL--CAGCGGKIADRYYLLAVDKQW 82
Query: 227 HSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRA 406
H RCLKC C+ L + +C+ K G I C+ DY R F C+ C I ASE+VMRA
Sbjct: 83 HLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEMVMRA 140
Query: 407 QGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTAL 532
+ +VYHL CFTCSTC L GD F + ++C T L
Sbjct: 141 RDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLL 182
>ref|XP_003130643.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sus scrofa].
Length = 399
Score = 124 bits (311), Expect = 8e-29
Identities = 68/162 (41%), Positives = 87/162 (53%)
Frame = +2
Query: 47 LES*EELVAPEQSLRKTMVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYW 226
+E E E L K G + PP++ + CAGCGGKIADR+ L A+D W
Sbjct: 34 MEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPAL--CAGCGGKIADRYYLLAVDKQW 91
Query: 227 HSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRA 406
H RCLKC C+ L + +C+ K G I C+ DY R F C+ C I ASE+VMRA
Sbjct: 92 HLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEMVMRA 149
Query: 407 QGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTAL 532
+ +VYHL CFTCSTC L GD F + ++C T L
Sbjct: 150 RDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLL 191
>ref|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [Sus scrofa].
Length = 390
Score = 121 bits (304), Expect = 5e-28
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = +2
Query: 161 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLF 340
+CAGC I D+F+L +D +WHS CLKC+ CQ QL D C++++G + C+ D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 341 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHD 517
G C+AC Q IP +++V +AQ VYHL CF C C +L GD F+ + +G L C+ D
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLPCFACIICNRQLATGDEFYLMEDGRLVCKED 143
Query: 518 RPTALIN 538
TA N
Sbjct: 144 YETAKQN 150
>ref|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa].
Length = 406
Score = 120 bits (302), Expect = 9e-28
Identities = 56/115 (48%), Positives = 72/115 (62%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
CAGCGGKI+DR+ L A+D WH RCLKC C+ L + +C++K G I C+ DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNL-ESELTCFSKDGSIYCKEDYYRRFS 111
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 508
C+ C I ASE+VMRA+ VYHL CFTC+TC L GD F + ++C
Sbjct: 112 VQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYC 165
>ref|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa].
Length = 295
Score = 110 bits (274), Expect = 2e-24
Identities = 51/115 (44%), Positives = 68/115 (59%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
C CG +I D++LL D WH RCL CS C+ LG TSCY K I C+ DY R +G
Sbjct: 14 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 72
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 508
CS CG+ I +++ V RA+GNVYHL CF C +C+ +L G+ F + + C
Sbjct: 73 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLC 125
>ref|XP_003132949.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like [Sus
scrofa].
Length = 402
Score = 109 bits (273), Expect = 2e-24
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
CAGC I DRFLL +D WH +C++C C L + C+++ G + C+ND+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECXTNLSE---KCFSREGKLYCKNDFFRRFG 61
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLF-CEHD- 517
C+ C Q I S+LV +A+ V+HL CFTC C +L G+ + I+ + F C+ D
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Query: 518 -RPTALINGHLNSLQS 562
++L G LNS+ S
Sbjct: 120 LSSSSLKEGSLNSVSS 135
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,661,256
Number of extensions: 624103
Number of successful extensions: 2844
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 2771
Number of HSP's successfully gapped: 38
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012291
(1007 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155242.1| LIM domain transcription factor LMO4 [Mus mu... 359 2e-99
Alignment gi|NP_001155241.1| LIM domain transcription factor LMO4 [Mus mu... 359 2e-99
Alignment gi|NP_034853.1| LIM domain transcription factor LMO4 [Mus muscu... 359 2e-99
Alignment gi|NP_476514.1| rhombotin-1 [Mus musculus]. 163 2e-40
Alignment gi|NP_997105.1| LIM domain only protein 3 [Mus musculus]. 159 3e-39
Alignment gi|NP_001135808.1| rhombotin-2 isoform 3 [Mus musculus]. 132 3e-31
Alignment gi|NP_001135807.1| rhombotin-2 isoform 2 [Mus musculus]. 132 3e-31
Alignment gi|NP_032531.2| rhombotin-2 isoform 1 [Mus musculus]. 132 3e-31
Alignment gi|NP_001135809.1| rhombotin-2 isoform 3 [Mus musculus]. 132 3e-31
Alignment gi|NP_001036042.1| LIM/homeobox protein Lhx9 isoform c [Mus mus... 123 3e-28
>ref|NP_001155242.1| LIM domain transcription factor LMO4 [Mus musculus].
Length = 165
Score = 359 bits (921), Expect = 2e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_001155241.1| LIM domain transcription factor LMO4 [Mus musculus].
Length = 165
Score = 359 bits (921), Expect = 2e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_034853.1| LIM domain transcription factor LMO4 [Mus musculus].
Length = 165
Score = 359 bits (921), Expect = 2e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_476514.1| rhombotin-1 [Mus musculus].
Length = 156
Score = 163 bits (412), Expect = 2e-40
Identities = 69/132 (52%), Positives = 89/132 (67%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQVD 141
Query: 518 RPTALINGHLNS 553
+NG S
Sbjct: 142 YEEGHLNGTFES 153
>ref|NP_997105.1| LIM domain only protein 3 [Mus musculus].
Length = 145
Score = 159 bits (402), Expect = 3e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 518 RPTALI 535
L+
Sbjct: 131 YEEGLM 136
>ref|NP_001135808.1| rhombotin-2 isoform 3 [Mus musculus].
Length = 158
Score = 132 bits (333), Expect = 3e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
>ref|NP_001135807.1| rhombotin-2 isoform 2 [Mus musculus].
Length = 220
Score = 132 bits (333), Expect = 3e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 92 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 151
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 152 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 209
>ref|NP_032531.2| rhombotin-2 isoform 1 [Mus musculus].
Length = 228
Score = 132 bits (333), Expect = 3e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 100 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 159
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 160 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 217
>ref|NP_001135809.1| rhombotin-2 isoform 3 [Mus musculus].
Length = 158
Score = 132 bits (333), Expect = 3e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
>ref|NP_001036042.1| LIM/homeobox protein Lhx9 isoform c [Mus musculus].
Length = 397
Score = 123 bits (308), Expect = 3e-28
Identities = 67/162 (41%), Positives = 87/162 (53%)
Frame = +2
Query: 47 LES*EELVAPEQSLRKTMVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYW 226
+E E E L K G + PP++ + CAGCGGKI+DR+ L A+D W
Sbjct: 34 MEEMERRSKTEARLTKGTQLNGRDAGMPPLSPEKPAL--CAGCGGKISDRYYLLAVDKQW 91
Query: 227 HSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRA 406
H RCLKC C+ L + +C+ K G I C+ DY R F C+ C I ASE+VMRA
Sbjct: 92 HLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEMVMRA 149
Query: 407 QGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTAL 532
+ +VYHL CFTCSTC L GD F + ++C T L
Sbjct: 150 RDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLL 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,862,531
Number of extensions: 828549
Number of successful extensions: 3781
Number of sequences better than 1.0e-05: 67
Number of HSP's gapped: 3600
Number of HSP's successfully gapped: 87
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012291
(1007 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006760.1| LIM domain transcription factor LMO4 [Homo sapi... 359 3e-99
Alignment gi|NP_002306.1| rhombotin-1 [Homo sapiens]. 164 2e-40
Alignment gi|NP_001230541.1| LIM domain only protein 3 isoform 3 [Homo sa... 159 4e-39
Alignment gi|NP_001230540.1| LIM domain only protein 3 isoform 2 [Homo sa... 159 4e-39
Alignment gi|NP_001230539.1| LIM domain only protein 3 isoform 1 [Homo sa... 159 4e-39
Alignment gi|NP_001230538.1| LIM domain only protein 3 isoform 1 [Homo sa... 159 4e-39
Alignment gi|NP_001001395.1| LIM domain only protein 3 isoform 1 [Homo sa... 159 4e-39
Alignment gi|NP_061110.2| LIM domain only protein 3 isoform 1 [Homo sapie... 159 4e-39
Alignment gi|NP_001135788.1| rhombotin-2 isoform 2 [Homo sapiens]. 132 4e-31
Alignment gi|NP_001135787.1| rhombotin-2 isoform 2 [Homo sapiens]. 132 4e-31
>ref|NP_006760.1| LIM domain transcription factor LMO4 [Homo sapiens].
Length = 165
Score = 359 bits (921), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Frame = +2
Query: 98 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 277
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
Sbjct: 1 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 278 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 457
GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 458 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 592
RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
Sbjct: 121 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC 165
>ref|NP_002306.1| rhombotin-1 [Homo sapiens].
Length = 156
Score = 164 bits (414), Expect = 2e-40
Identities = 69/132 (52%), Positives = 89/132 (67%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMD 141
Query: 518 RPTALINGHLNS 553
+NG S
Sbjct: 142 YEEGQLNGTFES 153
>ref|NP_001230541.1| LIM domain only protein 3 isoform 3 [Homo sapiens].
Length = 163
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 29 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 88
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 89 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 148
Query: 518 RPTALI 535
L+
Sbjct: 149 YEEGLM 154
>ref|NP_001230540.1| LIM domain only protein 3 isoform 2 [Homo sapiens].
Length = 156
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 518 RPTALI 535
L+
Sbjct: 142 YEEGLM 147
>ref|NP_001230539.1| LIM domain only protein 3 isoform 1 [Homo sapiens].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 518 RPTALI 535
L+
Sbjct: 131 YEEGLM 136
>ref|NP_001230538.1| LIM domain only protein 3 isoform 1 [Homo sapiens].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 518 RPTALI 535
L+
Sbjct: 131 YEEGLM 136
>ref|NP_001001395.1| LIM domain only protein 3 isoform 1 [Homo sapiens].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 518 RPTALI 535
L+
Sbjct: 131 YEEGLM 136
>ref|NP_061110.2| LIM domain only protein 3 isoform 1 [Homo sapiens].
Length = 145
Score = 159 bits (402), Expect = 4e-39
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = +2
Query: 158 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRL 337
K CAGC KI DR+LL A+D YWH CLKC+CC +LG++G++ YTK+ +ILCR DY+RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 338 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
FG +G C+AC + IPA E+VMRA+ NVYHL CF C C R GD+F N + C+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 518 RPTALI 535
L+
Sbjct: 131 YEEGLM 136
>ref|NP_001135788.1| rhombotin-2 isoform 2 [Homo sapiens].
Length = 158
Score = 132 bits (333), Expect = 4e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
>ref|NP_001135787.1| rhombotin-2 isoform 2 [Homo sapiens].
Length = 158
Score = 132 bits (333), Expect = 4e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Frame = +2
Query: 164 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 343
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
Query: 344 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 517
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,468,428
Number of extensions: 982347
Number of successful extensions: 4553
Number of sequences better than 1.0e-05: 94
Number of HSP's gapped: 4360
Number of HSP's successfully gapped: 126
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012291
(1007 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 708 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 708 bits (357), Expect = 0.0
Identities = 410/425 (96%), Gaps = 4/425 (0%)
Strand = Plus / Minus
Query: 585 aggtctgctaaaaggtcagagtgatgcagaatgcgtgccttcatctcagattttgttcat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141342310 aggtctgctaaaaggtcagagtgatgcagaatgcgtgccttcatctcagattttgttcat 141342251
Query: 645 cgcaggtggatcccctgtgtcttcagtagacaagtcacctttgtagcaccagtgccagct 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141342250 cgcaggtggatcccctgtgtcttcagtagacaagtcacctttgtagcaccagtgccagct 141342191
Query: 705 ccatgccattgcaccttctttagtcttgattgcccttcccgcatttattggtgtattaaa 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141342190 ccatgccattgcaccttctttagtcttgattgcccttcccgcatttattggtgtattaaa 141342131
Query: 765 atgactgaatatgaacattaaggacgccatgaacctgggctaatgggagactgtagagaa 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141342130 atgactgaatatgaacattaaggacgccatgaacctgggctaatgggagactgtagagaa 141342071
Query: 825 aatgaaaaaagatccaccggaggacatctttnnnnnnnnagggagcttgggaggagggag 884
||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 141342070 aatgaaaaaagatccaccggaggacatcttt-gggggggagggagcttgggaggcgggag 141342012
Query: 885 atgactaatgaagctaattaaaagaagcattcaaatctgctttctaccctcattaacaat 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141342011 atgactaatgaagctaattaaaagaagcattcaaatctgctttctaccctcattaacaat 141341952
Query: 945 tagcagggcactggccagaagtgggca-cctgcgttttaccttt-caacnatctctttgc 1002
|||||||||||||||||| ||| |||| |||||||||||||||| |||| |||||||||
Sbjct: 141341951 tagcagggcactggccag-agttggcaccctgcgttttacctttccaacattctctttgc 141341893
Query: 1003 tcttt 1007
|||||
Sbjct: 141341892 tcttt 141341888
Score = 478 bits (241), Expect = e-132
Identities = 241/241 (100%)
Strand = Plus / Minus
Query: 95 accatggtgaacccgggcagcagctcccagccgcccccggtgacggccggctccctctcc 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141353760 accatggtgaacccgggcagcagctcccagccgcccccggtgacggccggctccctctcc 141353701
Query: 155 tggaagcggtgcgcaggctgcgggggcaagatcgcggaccgctttctgctctatgccatg 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141353700 tggaagcggtgcgcaggctgcgggggcaagatcgcggaccgctttctgctctatgccatg 141353641
Query: 215 gacagctactggcacagccggtgcctcaagtgctcctgctgccaggcgcagctgggcgac 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141353640 gacagctactggcacagccggtgcctcaagtgctcctgctgccaggcgcagctgggcgac 141353581
Query: 275 atcggcacgtcctgttacaccaagagcggcatgatcctttgcagaaatgactacattagg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141353580 atcggcacgtcctgttacaccaagagcggcatgatcctttgcagaaatgactacattagg 141353521
Query: 335 t 335
|
Sbjct: 141353520 t 141353520
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 429 agtgttttacatgctctacctgccggaatcgcctggtcccaggagatcggtttcactaca 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141346957 agtgttttacatgctctacctgccggaatcgcctggtcccaggagatcggtttcactaca 141346898
Query: 489 tcaatggcagtttattttgtgaacatgatagacctacagctctcatcaatggccatttga 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141346897 tcaatggcagtttattttgtgaacatgatagacctacagctctcatcaatggccatttga 141346838
Query: 549 attcacttcagagcaatccactactgccagaccagaaggt 588
||||||||||||||||||||||||||||||||||||||||
Sbjct: 141346837 attcacttcagagcaatccactactgccagaccagaaggt 141346798
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Minus
Query: 332 aggttatttgggaatagcggtgcttgcagtgcttgtggacagtctattcctgcgagcgag 391
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 141347458 aggttatttgggaatagcggtgcttgcagtgcttgtggacagtccattcctgcgagcgag 141347399
Query: 392 ctggtcatgcgggcccaaggcaatgtgtatcatctgaag 430
|||||||||||||||||||||||||||||||||||||||
Sbjct: 141347398 ctggtcatgcgggcccaaggcaatgtgtatcatctgaag 141347360
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 3 agttttgacagtacccgagctgggattgtcagcggcggcgagcgctggaaagttgagagg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141354034 agttttgacagtacccgagctgggattgtcagcggcggcgagcgctggaaagttgagagg 141353975
Query: 63 agctcgtggccccagaacaaagcttgagaaaa 94
||||||||||||||||||||||||||||||||
Sbjct: 141353974 agctcgtggccccagaacaaagcttgagaaaa 141353943
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,811,125
Number of extensions: 166
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 6
Length of query: 1007
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 986
Effective length of database: 2,808,413,156
Effective search space: 2769095371816
Effective search space used: 2769095371816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)