Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012296
(1637 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068951.1| syntenin-1 [Bos taurus]. 564 e-161
Alignment gi|NP_001192743.1| amyloid beta A4 precursor protein-binding fa... 64 3e-10
Alignment gi|XP_002689680.1| PREDICTED: amyloid beta A4 precursor protein... 64 3e-10
Alignment gi|NP_001029586.1| amyloid beta A4 precursor protein-binding fa... 53 9e-07
>ref|NP_001068951.1| syntenin-1 [Bos taurus].
Length = 298
Score = 564 bits (1453), Expect = e-161
Identities = 281/298 (94%), Positives = 292/298 (97%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 240
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS PVSQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPVSQDGNLYPKLYPELSQYMGLS 60
Query: 241 LNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 420
LNEEEI NMA+VPGAP QGQ+VARPSSMN+MVAP+TG D GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANMALVPGAPSQGQVVARPSSMNHMVAPITGGDIGIRRAEIKQGIREVILCKD 120
Query: 421 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 600
QDGKIGLRLKS+DNGIFVQLVQANSP+SLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPSSLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 180
Query: 601 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 780
AFGEKITMTIRDRPFERT+TMHKDSTGHVGF+FKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTIRDRPFERTITMHKDSTGHVGFVFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 781 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
VNGQNVIGLKDSQIADILSTAGN++TITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 VNGQNVIGLKDSQIADILSTAGNIVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_001192743.1| amyloid beta A4 precursor protein-binding family A member 1 [Bos
taurus].
Length = 835
Score = 64.3 bits (155), Expect = 3e-10
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Frame = +1
Query: 412 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 552
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 652 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 710
Query: 553 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 726
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 711 SLVGLPLSTCQSIIKGLKNQARVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 770
Query: 727 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRM 906
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA ++ + +
Sbjct: 771 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYRLLTAQE 830
Query: 907 AP 912
P
Sbjct: 831 QP 832
>ref|XP_002689680.1| PREDICTED: amyloid beta A4 precursor protein-binding family A member
1-like [Bos taurus].
Length = 835
Score = 64.3 bits (155), Expect = 3e-10
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Frame = +1
Query: 412 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 552
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 652 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 710
Query: 553 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 726
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 711 SLVGLPLSTCQSIIKGLKNQARVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 770
Query: 727 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRM 906
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA ++ + +
Sbjct: 771 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYRLLTAQE 830
Query: 907 AP 912
P
Sbjct: 831 QP 832
>ref|NP_001029586.1| amyloid beta A4 precursor protein-binding family A member 3 [Bos
taurus].
Length = 578
Score = 52.8 bits (125), Expect = 9e-07
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 10/185 (5%)
Frame = +1
Query: 388 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 543
+ REV + K + +G+ L V++G + V AN PA G L GD++ I
Sbjct: 393 ENCREVFIEKRRGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRITAI 450
Query: 544 NGENCAGWSSDRAHKVLKQAFGEK-ITMTIRDRPFERTVTMHKDSTGH-VGFIFKNGKIT 717
NG + G +++ + +T++I P T + + +GF ++G I
Sbjct: 451 NGTSLVGLPLAACQAAVREVKSQTLVTLSIVHCPPVTTAIIRRPHVREQLGFCVEDGIIC 510
Query: 718 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHII 897
S+++ A R G+ H I E+NG +V+ ++I ++L+ A + I MPA + +
Sbjct: 511 SLLRGGIAERGGVRVGHRIIEINGHSVVATPHARIIELLTEAHIEVHIKTMPAATYRLLT 570
Query: 898 KRMAP 912
+ P
Sbjct: 571 GQEQP 575
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,466,795
Number of extensions: 1508143
Number of successful extensions: 4140
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4123
Number of HSP's successfully gapped: 4
Length of query: 545
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 438
Effective length of database: 14,140,958
Effective search space: 6193739604
Effective search space used: 6193739604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012296
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012296
(1637 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540090.2| PREDICTED: similar to syntenin isoform 3 isofor... 553 e-157
Alignment gi|XP_857475.1| PREDICTED: similar to Syntenin-1 (Syndecan bind... 475 e-134
Alignment gi|XP_542935.2| PREDICTED: similar to Syntenin-2 (Syndecan bind... 352 5e-97
Alignment gi|XP_848698.1| PREDICTED: similar to amyloid beta (A4) precurs... 60 5e-09
Alignment gi|XP_545817.2| PREDICTED: similar to amyloid beta (A4) precurs... 60 5e-09
Alignment gi|XP_542171.2| PREDICTED: similar to amyloid beta (A4) precurs... 55 2e-07
>ref|XP_540090.2| PREDICTED: similar to syntenin isoform 3 isoform 1 [Canis
familiaris].
Length = 297
Score = 553 bits (1425), Expect = e-157
Identities = 279/298 (93%), Positives = 289/298 (96%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 240
MSLYPSLEDLKVDKV+QAQTAFSANPANPAILSEAS P+SQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVLQAQTAFSANPANPAILSEASAPISQDGNLYPKLYPELSQYMGLS 60
Query: 241 LNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 420
LN+EEI NMA+ PGA VQG LVARPSSMNYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNDEEIRANMALAPGASVQG-LVARPSSMNYMVAPVTGNDVGIRRAEIKQGIREVILCKD 119
Query: 421 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 600
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 120 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 179
Query: 601 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 780
AFGEKITMT+RDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 180 AFGEKITMTVRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 239
Query: 781 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
VNGQNVIGLKDSQIADILST+ V+TITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 240 VNGQNVIGLKDSQIADILSTSETVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 297
>ref|XP_857475.1| PREDICTED: similar to Syntenin-1 (Syndecan binding protein 1)
(Melanoma differentiation-associated protein 9) (MDA-9)
(Scaffold protein Pbp1) (Pro-TGF-alpha cytoplasmic
domain-interacting protein 18) (TACIP18) isoform 2
[Canis familiaris].
Length = 273
Score = 475 bits (1223), Expect = e-134
Identities = 236/250 (94%), Positives = 244/250 (97%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 240
MSLYPSLEDLKVDKV+QAQTAFSANPANPAILSEAS P+SQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVLQAQTAFSANPANPAILSEASAPISQDGNLYPKLYPELSQYMGLS 60
Query: 241 LNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 420
LN+EEI NMA+ PGA VQGQLVARPSSMNYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNDEEIRANMALAPGASVQGQLVARPSSMNYMVAPVTGNDVGIRRAEIKQGIREVILCKD 120
Query: 421 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 600
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 180
Query: 601 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 780
AFGEKITMT+RDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTVRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 781 VNGQNVIGLK 810
VNGQNVIGLK
Sbjct: 241 VNGQNVIGLK 250
>ref|XP_542935.2| PREDICTED: similar to Syntenin-2 (Syndecan binding protein 2)
[Canis familiaris].
Length = 287
Score = 352 bits (904), Expect = 5e-97
Identities = 173/297 (58%), Positives = 228/297 (76%)
Frame = +1
Query: 64 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 243
+LYPSLEDLK+D+ IQAQ +A PA+ PVSQ LYP L +L YMGLSL
Sbjct: 3 TLYPSLEDLKMDQAIQAQARAAARM--PAL------PVSQPSVLYPSL-ADLENYMGLSL 53
Query: 244 NEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 423
+ +E+ N+ +P +V S +VAP++GN G RRAEIK G+RE+ LCKD+
Sbjct: 54 SSQEVQQNLLQLPEG---AGMVGSGLSPGQLVAPLSGNSLGTRRAEIKPGVREIYLCKDE 110
Query: 424 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 603
GK GLRL+++D G+FVQLV+ANSPASLVGLRFGDQ+LQI+G +CAGWS+DRAH+VLK+A
Sbjct: 111 HGKTGLRLRAIDQGLFVQLVKANSPASLVGLRFGDQILQIDGRDCAGWSTDRAHRVLKRA 170
Query: 604 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 783
EKI M +RDRPF+RTVTMHKDSTGHVGF+ K G + S+V+ SSAARNGLLT+ S+CEV
Sbjct: 171 SAEKIAMVVRDRPFQRTVTMHKDSTGHVGFVIKKGAVVSVVRGSSAARNGLLTKQSVCEV 230
Query: 784 NGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
NGQNV+GLKD + +IL+ AGNV+T+TI+P I+EH++K+++P+++ MDH+IP+V
Sbjct: 231 NGQNVVGLKDKAVTEILAMAGNVVTLTIIPTVIYEHMVKKLSPTLLHHAMDHSIPDV 287
>ref|XP_848698.1| PREDICTED: similar to amyloid beta (A4) precursor protein-binding,
family A, member 2 isoform 3 [Canis familiaris].
Length = 754
Score = 60.5 bits (145), Expect = 5e-09
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Frame = +1
Query: 496 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 669
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 610 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 669
Query: 670 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 846
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 670 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 729
Query: 847 NVITITIMPAFIFEHIIKRMAP 912
I + MPA +F + + P
Sbjct: 730 GEIHMKTMPAAMFRLLTGQETP 751
>ref|XP_545817.2| PREDICTED: similar to amyloid beta (A4) precursor protein-binding,
family A, member 2 isoform 2 [Canis familiaris].
Length = 742
Score = 60.5 bits (145), Expect = 5e-09
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Frame = +1
Query: 496 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 669
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 598 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 657
Query: 670 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 846
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 658 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 717
Query: 847 NVITITIMPAFIFEHIIKRMAP 912
I + MPA +F + + P
Sbjct: 718 GEIHMKTMPAAMFRLLTGQETP 739
>ref|XP_542171.2| PREDICTED: similar to amyloid beta (A4) precursor protein-binding,
family A, member 3 [Canis familiaris].
Length = 577
Score = 55.1 bits (131), Expect = 2e-07
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 10/185 (5%)
Frame = +1
Query: 388 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 543
+ REV + K + +G+ L V++G + V AN PA G L GD++ I
Sbjct: 392 ENCREVCIEKRRGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAI 449
Query: 544 NGENCAGWSSDRAHKVLKQAFGEK-ITMTIRDRPFERTVTMHKD-STGHVGFIFKNGKIT 717
NG + G +++ + +T++I P T + + + +GF ++G I
Sbjct: 450 NGTSLVGLPLAACQAAVREVKSQTLVTLSIIHCPPVTTAIIRRPHAREQLGFCVEDGIIC 509
Query: 718 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHII 897
S+++ A R G+ H I E+NGQ+V+ ++I ++L+ A + I MPA + +
Sbjct: 510 SLLRGGIAERGGVRVGHRIIEINGQSVVATPHARIIELLTEAHTEVHIKTMPAATYRLLT 569
Query: 898 KRMAP 912
+ P
Sbjct: 570 GQEQP 574
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,739,632
Number of extensions: 1520327
Number of successful extensions: 4340
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4327
Number of HSP's successfully gapped: 6
Length of query: 545
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 437
Effective length of database: 15,274,216
Effective search space: 6674832392
Effective search space used: 6674832392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012296
(1637 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125665.1| PREDICTED: syntenin-1 isoform 1 [Sus scrofa]. 591 e-169
Alignment gi|XP_003355100.1| PREDICTED: syntenin-1 isoform 2 [Sus scrofa]. 563 e-160
Alignment gi|XP_003134388.1| PREDICTED: syntenin-2-like [Sus scrofa]. 354 9e-98
Alignment gi|XP_003121990.2| PREDICTED: amyloid beta A4 precursor protein... 64 2e-10
Alignment gi|XP_003123103.1| PREDICTED: amyloid beta A4 precursor protein... 52 1e-06
>ref|XP_003125665.1| PREDICTED: syntenin-1 isoform 1 [Sus scrofa].
Length = 362
Score = 591 bits (1523), Expect = e-169
Identities = 301/303 (99%), Positives = 301/303 (99%)
Frame = +1
Query: 46 KNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQ 225
KNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQ
Sbjct: 60 KNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQ 119
Query: 226 YMGLSLNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREV 405
YMGLSLNEEEI TNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREV
Sbjct: 120 YMGLSLNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREV 179
Query: 406 ILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAH 585
ILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAH
Sbjct: 180 ILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAH 239
Query: 586 KVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTE 765
KVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGF FKNGKITSIVKDSSAARNGLLTE
Sbjct: 240 KVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGFSFKNGKITSIVKDSSAARNGLLTE 299
Query: 766 HSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTI 945
HSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTI
Sbjct: 300 HSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTI 359
Query: 946 PEV 954
PEV
Sbjct: 360 PEV 362
>ref|XP_003355100.1| PREDICTED: syntenin-1 isoform 2 [Sus scrofa].
Length = 292
Score = 563 bits (1451), Expect = e-160
Identities = 290/298 (97%), Positives = 290/298 (97%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 240
MSLYPSLEDLK AQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLK------AQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 54
Query: 241 LNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 420
LNEEEI TNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD
Sbjct: 55 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 114
Query: 421 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 600
QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ
Sbjct: 115 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 174
Query: 601 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 780
AFGEKITMTIRDRPFERTVTMHKDSTGHVGF FKNGKITSIVKDSSAARNGLLTEHSICE
Sbjct: 175 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFSFKNGKITSIVKDSSAARNGLLTEHSICE 234
Query: 781 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 235 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 292
>ref|XP_003134388.1| PREDICTED: syntenin-2-like [Sus scrofa].
Length = 291
Score = 354 bits (908), Expect = 9e-98
Identities = 175/300 (58%), Positives = 227/300 (75%), Gaps = 3/300 (1%)
Frame = +1
Query: 64 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYP---ELSQYMG 234
+LYPSLEDLKVD+ +QAQ P PA+ PV + + P LYP EL YMG
Sbjct: 3 TLYPSLEDLKVDQAMQAQARVV--PRMPAL------PVPEHDSRPPVLYPNLAELENYMG 54
Query: 235 LSLNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILC 414
LSL+ +E+ N+ P P + SS +VAPV+GN G+ RAEIK G+RE+ LC
Sbjct: 55 LSLSSQEVQQNL---PQIPEGARAAVSGSSPGQLVAPVSGNSLGVLRAEIKPGVREIHLC 111
Query: 415 KDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVL 594
KD GK GLRL+++D G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGWS+D+AH+ +
Sbjct: 112 KDDRGKTGLRLRAIDKGVFVQLVQANTPASLVGLRFGDQILQIDGRDCAGWSTDKAHRAV 171
Query: 595 KQAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSI 774
K+A EKI M +RDRPF+RTVTMHKDSTGHVGF+ K GK+ S+VK SSAARNGLLT H +
Sbjct: 172 KKASAEKIVMIVRDRPFQRTVTMHKDSTGHVGFVIKKGKVISLVKGSSAARNGLLTNHYV 231
Query: 775 CEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
CEVNGQNVIGLKD ++ +IL+TAGNVIT+TI+P I+EH++K+++P+++ MDH+IP+V
Sbjct: 232 CEVNGQNVIGLKDKEVTEILATAGNVITLTIIPTVIYEHMVKKLSPTLLHHTMDHSIPDV 291
>ref|XP_003121990.2| PREDICTED: amyloid beta A4 precursor protein-binding family A
member 1, partial [Sus scrofa].
Length = 391
Score = 64.3 bits (155), Expect = 2e-10
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Frame = +1
Query: 412 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 552
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 208 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 266
Query: 553 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 726
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 267 SLVGLPLSTCQSIIKGLKNQARVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 326
Query: 727 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRM 906
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA ++ + +
Sbjct: 327 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYRLLTAQE 386
Query: 907 AP 912
P
Sbjct: 387 QP 388
>ref|XP_003123103.1| PREDICTED: amyloid beta A4 precursor protein-binding family A
member 3 [Sus scrofa].
Length = 587
Score = 52.0 bits (123), Expect = 1e-06
Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Frame = +1
Query: 388 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 543
+ REV + K + +G+ L V++G + V AN PA G L GD++ I
Sbjct: 402 ENCREVCIEKRRGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRITAI 459
Query: 544 NGENCAGWSSDRAHKVLKQAFGEK-ITMTIRDRPFERTVTMHKDSTGH-VGFIFKNGKIT 717
NG + G +++ + +T++I P T + + +GF ++G I
Sbjct: 460 NGTSLVGLPLAACQAAVREVKSQTLVTLSIVHCPPVTTAIIRRPHVREQLGFCVEDGIIC 519
Query: 718 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHII 897
S+++ A R G+ H I E+NG +V+ +I ++L+ A + I MPA + +
Sbjct: 520 SLLRGGIAERGGVRVGHRIIEINGHSVVATPHDRIIELLTEAHIEVHIKTMPAATYRLLT 579
Query: 898 KRMAP 912
+ P
Sbjct: 580 GQEQP 584
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,808,807
Number of extensions: 1001750
Number of successful extensions: 2729
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2717
Number of HSP's successfully gapped: 5
Length of query: 545
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 441
Effective length of database: 8,754,644
Effective search space: 3860798004
Effective search space used: 3860798004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012296
(1637 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091697.1| syntenin-1 isoform 1 [Mus musculus]. 527 e-150
Alignment gi|NP_058087.2| syntenin-1 isoform 2 [Mus musculus]. 521 e-148
Alignment gi|NP_663510.1| syntenin-2 [Mus musculus]. 345 6e-95
Alignment gi|NP_796008.2| amyloid beta (A4) precursor protein binding, fa... 64 3e-10
Alignment gi|NP_031487.1| amyloid beta A4 precursor protein-binding famil... 60 4e-09
Alignment gi|NP_061228.1| amyloid beta A4 precursor protein-binding famil... 56 9e-08
>ref|NP_001091697.1| syntenin-1 isoform 1 [Mus musculus].
Length = 299
Score = 527 bits (1358), Expect = e-150
Identities = 267/299 (89%), Positives = 283/299 (94%), Gaps = 1/299 (0%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPA-ILSEASVPVSQDGNLYPKLYPELSQYMGL 237
MSLYPSLEDLKVDKVIQAQTA+SANPA+ A +L +AS + DGNLYPKLYPELSQYMGL
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAYSANPASQAFVLVDASAALPPDGNLYPKLYPELSQYMGL 60
Query: 238 SLNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCK 417
SLNE EI +M +V GAP QGQLVARPSS+NYMVAPVTGNDAGIRRAEIKQGIREVILCK
Sbjct: 61 SLNEAEICESMPMVSGAPAQGQLVARPSSVNYMVAPVTGNDAGIRRAEIKQGIREVILCK 120
Query: 418 DQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLK 597
DQDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLK
Sbjct: 121 DQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLK 180
Query: 598 QAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSIC 777
QAFGEKITMTIRDRPFERTVTMHKDS+GHVGFIFK+GKITSIVKDSSAARNGLLT+H IC
Sbjct: 181 QAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIVKDSSAARNGLLTDHHIC 240
Query: 778 EVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
E+NGQNVIGLKD+QIADILSTAG V+TITIMP FIFEHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 EINGQNVIGLKDAQIADILSTAGTVVTITIMPTFIFEHIIKRMAPSIMKSLMDHTIPEV 299
>ref|NP_058087.2| syntenin-1 isoform 2 [Mus musculus].
Length = 298
Score = 521 bits (1341), Expect = e-148
Identities = 266/299 (88%), Positives = 282/299 (94%), Gaps = 1/299 (0%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPA-ILSEASVPVSQDGNLYPKLYPELSQYMGL 237
MSLYPSLEDLKVDKVIQAQTA+SANPA+ A +L +AS + DGNLYPKLYPELSQYMGL
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAYSANPASQAFVLVDASAALPPDGNLYPKLYPELSQYMGL 60
Query: 238 SLNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCK 417
SLNE EI +M +V GAP QG LVARPSS+NYMVAPVTGNDAGIRRAEIKQGIREVILCK
Sbjct: 61 SLNEAEICESMPMVSGAPAQG-LVARPSSVNYMVAPVTGNDAGIRRAEIKQGIREVILCK 119
Query: 418 DQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLK 597
DQDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLK
Sbjct: 120 DQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLK 179
Query: 598 QAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSIC 777
QAFGEKITMTIRDRPFERTVTMHKDS+GHVGFIFK+GKITSIVKDSSAARNGLLT+H IC
Sbjct: 180 QAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIVKDSSAARNGLLTDHHIC 239
Query: 778 EVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
E+NGQNVIGLKD+QIADILSTAG V+TITIMP FIFEHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 240 EINGQNVIGLKDAQIADILSTAGTVVTITIMPTFIFEHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_663510.1| syntenin-2 [Mus musculus].
Length = 292
Score = 345 bits (885), Expect = 6e-95
Identities = 179/296 (60%), Positives = 227/296 (76%), Gaps = 1/296 (0%)
Frame = +1
Query: 67 LYPSLEDLKVDKVIQAQTAFSAN-PANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 243
LYPSLEDLKV +VIQAQ S P PA ++ A P+S+ LYP L EL YMGLSL
Sbjct: 4 LYPSLEDLKVGQVIQAQGRASPTMPTLPAPMASAP-PLSE---LYPNL-AELESYMGLSL 58
Query: 244 NEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 423
+ +E+ N+ +P + +V +VAPV+GN+ GI RAEIK G+RE+ LCKD+
Sbjct: 59 SSQEVQKNLTQIPDSD---NMVVTSPGPGQVVAPVSGNNLGILRAEIKPGVREIHLCKDE 115
Query: 424 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 603
GK GLRL++VD G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGW++ +AHKVLK+A
Sbjct: 116 RGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQILQIDGCDCAGWNTHKAHKVLKKA 175
Query: 604 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 783
EKI M IRDRPF+RTVTMHKDS+G VGF K GKI S+VK SSAARNGLLT H +CEV
Sbjct: 176 SAEKIVMVIRDRPFQRTVTMHKDSSGQVGFSIKKGKIVSVVKGSSAARNGLLTNHYVCEV 235
Query: 784 NGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPE 951
NGQNVIGLKD ++ +IL+TAG+VIT+TI+P I+EH+IKR++P ++ MDH+IP+
Sbjct: 236 NGQNVIGLKDKKVTEILTTAGDVITLTIIPTVIYEHMIKRLSPLLLHHTMDHSIPD 291
>ref|NP_796008.2| amyloid beta (A4) precursor protein binding, family A, member 1 [Mus
musculus].
Length = 842
Score = 64.3 bits (155), Expect = 3e-10
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Frame = +1
Query: 412 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 552
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 659 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 717
Query: 553 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 726
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 718 SLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 777
Query: 727 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRM 906
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA ++ + +
Sbjct: 778 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYRLLTAQE 837
Query: 907 AP 912
P
Sbjct: 838 QP 839
>ref|NP_031487.1| amyloid beta A4 precursor protein-binding family A member 2 [Mus
musculus].
Length = 750
Score = 60.5 bits (145), Expect = 4e-09
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Frame = +1
Query: 496 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 669
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 606 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 665
Query: 670 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 846
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 666 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 725
Query: 847 NVITITIMPAFIFEHIIKRMAP 912
I + MPA +F + + P
Sbjct: 726 GEIHMKTMPAAMFRLLTGQETP 747
>ref|NP_061228.1| amyloid beta A4 precursor protein-binding family A member 3 [Mus
musculus].
Length = 571
Score = 55.8 bits (133), Expect = 9e-08
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 10/185 (5%)
Frame = +1
Query: 388 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 543
Q REV + K +G+ L V++G + V AN PA G L GD+V I
Sbjct: 387 QNCREVCIQKRPGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERCGALSIGDRVTAI 444
Query: 544 NGENCAGWSSDRAHKVLKQAFG-EKITMTIRDRPFERTVTMHKDSTGH-VGFIFKNGKIT 717
NG + G S +++ +T++I P T + + +GF ++G I
Sbjct: 445 NGTSLVGLSLAACQAAVREVRRLSSVTLSIIHCPPVTTAVIRRPHVREQLGFCVEDGIIC 504
Query: 718 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHII 897
S+++ +A R G+ H I EVNGQ+V+ + ++I +L T I I MPA + +
Sbjct: 505 SLLRGGAAERGGVRVGHRIIEVNGQSVVAMPHARIIQLL-TETREIHIKTMPAATYRLLT 563
Query: 898 KRMAP 912
+ P
Sbjct: 564 GQEQP 568
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,088,474
Number of extensions: 1291868
Number of successful extensions: 3803
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3780
Number of HSP's successfully gapped: 6
Length of query: 545
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 439
Effective length of database: 12,433,743
Effective search space: 5458413177
Effective search space used: 5458413177
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012296
(1637 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007068.1| syntenin-1 isoform 1 [Homo sapiens]. 558 e-159
Alignment gi|NP_005616.2| syntenin-1 isoform 1 [Homo sapiens]. 558 e-159
Alignment gi|NP_001007071.1| syntenin-1 isoform 3 [Homo sapiens]. 551 e-157
Alignment gi|NP_001007070.1| syntenin-1 isoform 3 [Homo sapiens]. 551 e-157
Alignment gi|NP_001007069.1| syntenin-1 isoform 2 [Homo sapiens]. 540 e-153
Alignment gi|NP_001186713.1| syntenin-2 isoform a [Homo sapiens]. 348 6e-96
Alignment gi|NP_536737.3| syntenin-2 isoform a [Homo sapiens]. 348 6e-96
Alignment gi|NP_056500.2| syntenin-2 isoform b [Homo sapiens]. 301 2e-81
Alignment gi|NP_001154.2| amyloid beta A4 precursor protein-binding famil... 64 3e-10
Alignment gi|NP_001123886.1| amyloid beta A4 precursor protein-binding fa... 60 5e-09
>ref|NP_001007068.1| syntenin-1 isoform 1 [Homo sapiens].
Length = 298
Score = 558 bits (1437), Expect = e-159
Identities = 278/298 (93%), Positives = 290/298 (97%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 240
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 241 LNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 420
LNEEEI N+AVV GAP+QGQLVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 120
Query: 421 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 600
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 180
Query: 601 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 780
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 781 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
+NGQNVIGLKDSQIADILST+G V+TITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_005616.2| syntenin-1 isoform 1 [Homo sapiens].
Length = 298
Score = 558 bits (1437), Expect = e-159
Identities = 278/298 (93%), Positives = 290/298 (97%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 240
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 241 LNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 420
LNEEEI N+AVV GAP+QGQLVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 120
Query: 421 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 600
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 180
Query: 601 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 780
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 781 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
+NGQNVIGLKDSQIADILST+G V+TITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_001007071.1| syntenin-1 isoform 3 [Homo sapiens].
Length = 297
Score = 551 bits (1420), Expect = e-157
Identities = 277/298 (92%), Positives = 289/298 (96%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 240
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 241 LNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 420
LNEEEI N+AVV GAP+QG LVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 119
Query: 421 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 600
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 120 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 179
Query: 601 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 780
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 180 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 239
Query: 781 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
+NGQNVIGLKDSQIADILST+G V+TITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 240 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 297
>ref|NP_001007070.1| syntenin-1 isoform 3 [Homo sapiens].
Length = 297
Score = 551 bits (1420), Expect = e-157
Identities = 277/298 (92%), Positives = 289/298 (96%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 240
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 241 LNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 420
LNEEEI N+AVV GAP+QG LVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 119
Query: 421 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 600
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 120 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 179
Query: 601 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 780
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 180 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 239
Query: 781 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
+NGQNVIGLKDSQIADILST+G V+TITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 240 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 297
>ref|NP_001007069.1| syntenin-1 isoform 2 [Homo sapiens].
Length = 292
Score = 540 bits (1392), Expect = e-153
Identities = 272/298 (91%), Positives = 284/298 (95%)
Frame = +1
Query: 61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 240
MSLYPSLEDLK AQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLK------AQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 54
Query: 241 LNEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 420
LNEEEI N+AVV GAP+QGQLVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 55 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 114
Query: 421 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 600
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 115 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 174
Query: 601 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 780
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 175 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 234
Query: 781 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 954
+NGQNVIGLKDSQIADILST+G V+TITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 235 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 292
>ref|NP_001186713.1| syntenin-2 isoform a [Homo sapiens].
Length = 292
Score = 348 bits (894), Expect = 6e-96
Identities = 177/296 (59%), Positives = 228/296 (77%)
Frame = +1
Query: 64 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 243
SLYPSLEDLKVD+ IQAQ A+P PA+ +A+ +S LYP L EL YMGLSL
Sbjct: 3 SLYPSLEDLKVDQAIQAQVR--ASPKMPALPVQATA-ISPPPVLYPNL-AELENYMGLSL 58
Query: 244 NEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 423
+ +E+ ++ +P V+ P MVAPVTG G+RRAEIK G+RE+ LCKD+
Sbjct: 59 SSQEVQESLLQIPEG--DSTAVSGPGP-GQMVAPVTGYSLGVRRAEIKPGVREIHLCKDE 115
Query: 424 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 603
GK GLRL+ VD G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGWSS +AH+V+K+A
Sbjct: 116 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA 175
Query: 604 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 783
G+KI + +RDRPF+RTVTMHKDS GHVGF+ K GKI S+VK SSAARNGLLT H +CEV
Sbjct: 176 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV 235
Query: 784 NGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPE 951
+GQNVIGLKD +I +IL+TAGNV+T+TI+P+ I+EH++K++ P ++ MDH+IP+
Sbjct: 236 DGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPD 291
>ref|NP_536737.3| syntenin-2 isoform a [Homo sapiens].
Length = 292
Score = 348 bits (894), Expect = 6e-96
Identities = 177/296 (59%), Positives = 228/296 (77%)
Frame = +1
Query: 64 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 243
SLYPSLEDLKVD+ IQAQ A+P PA+ +A+ +S LYP L EL YMGLSL
Sbjct: 3 SLYPSLEDLKVDQAIQAQVR--ASPKMPALPVQATA-ISPPPVLYPNL-AELENYMGLSL 58
Query: 244 NEEEIHTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 423
+ +E+ ++ +P V+ P MVAPVTG G+RRAEIK G+RE+ LCKD+
Sbjct: 59 SSQEVQESLLQIPEG--DSTAVSGPGP-GQMVAPVTGYSLGVRRAEIKPGVREIHLCKDE 115
Query: 424 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 603
GK GLRL+ VD G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGWSS +AH+V+K+A
Sbjct: 116 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA 175
Query: 604 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 783
G+KI + +RDRPF+RTVTMHKDS GHVGF+ K GKI S+VK SSAARNGLLT H +CEV
Sbjct: 176 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV 235
Query: 784 NGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPE 951
+GQNVIGLKD +I +IL+TAGNV+T+TI+P+ I+EH++K++ P ++ MDH+IP+
Sbjct: 236 DGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPD 291
>ref|NP_056500.2| syntenin-2 isoform b [Homo sapiens].
Length = 207
Score = 301 bits (770), Expect = 2e-81
Identities = 139/206 (67%), Positives = 177/206 (85%)
Frame = +1
Query: 334 MVAPVTGNDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVG 513
MVAPVTG G+RRAEIK G+RE+ LCKD+ GK GLRL+ VD G+FVQLVQAN+PASLVG
Sbjct: 1 MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVG 60
Query: 514 LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGF 693
LRFGDQ+LQI+G +CAGWSS +AH+V+K+A G+KI + +RDRPF+RTVTMHKDS GHVGF
Sbjct: 61 LRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGF 120
Query: 694 IFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMP 873
+ K GKI S+VK SSAARNGLLT H +CEV+GQNVIGLKD +I +IL+TAGNV+T+TI+P
Sbjct: 121 VIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIP 180
Query: 874 AFIFEHIIKRMAPSIMKSLMDHTIPE 951
+ I+EH++K++ P ++ MDH+IP+
Sbjct: 181 SVIYEHMVKKLPPVLLHHTMDHSIPD 206
>ref|NP_001154.2| amyloid beta A4 precursor protein-binding family A member 1 [Homo
sapiens].
Length = 837
Score = 64.3 bits (155), Expect = 3e-10
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Frame = +1
Query: 412 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 552
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 654 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 712
Query: 553 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 726
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 713 SLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 772
Query: 727 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRM 906
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA ++ + +
Sbjct: 773 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYRLLTAQE 832
Query: 907 AP 912
P
Sbjct: 833 QP 834
>ref|NP_001123886.1| amyloid beta A4 precursor protein-binding family A member 2 isoform b
[Homo sapiens].
Length = 737
Score = 60.5 bits (145), Expect = 5e-09
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Frame = +1
Query: 496 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 669
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 593 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 652
Query: 670 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 846
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 653 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 712
Query: 847 NVITITIMPAFIFEHIIKRMAP 912
I + MPA +F + + P
Sbjct: 713 GEIHMKTMPAAMFRLLTGQETP 734
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,816,838
Number of extensions: 1513158
Number of successful extensions: 4424
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4396
Number of HSP's successfully gapped: 12
Length of query: 545
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 438
Effective length of database: 14,770,016
Effective search space: 6469267008
Effective search space used: 6469267008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012296
(1637 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 999 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 999 bits (504), Expect = 0.0
Identities = 504/504 (100%)
Strand = Plus / Minus
Query: 902 ggatggcacccagcatcatgaaaagcctgatggatcacaccatccctgaggtctaagagt 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81091292 ggatggcacccagcatcatgaaaagcctgatggatcacaccatccctgaggtctaagagt 81091233
Query: 962 cgcagcagcacagtggaaacggtgccaagcttctccatgcgacctcttcagtgacttcac 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81091232 cgcagcagcacagtggaaacggtgccaagcttctccatgcgacctcttcagtgacttcac 81091173
Query: 1022 tttctcttatgcacatgaagctttcgaggagccagagagcatatgctgcgcgagggcctt 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81091172 tttctcttatgcacatgaagctttcgaggagccagagagcatatgctgcgcgagggcctt 81091113
Query: 1082 cctgttccggcaggctggcctcttaactgtttcatctgatgtcttgttcagacttcaaga 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81091112 cctgttccggcaggctggcctcttaactgtttcatctgatgtcttgttcagacttcaaga 81091053
Query: 1142 tagttgtagccttagcctagtttcagagaggtgaaaactttgatttactgaaacttttgt 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81091052 tagttgtagccttagcctagtttcagagaggtgaaaactttgatttactgaaacttttgt 81090993
Query: 1202 agcttagtttctttactggaaacctgatgctctttcaagccatgggattagattaggacg 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81090992 agcttagtttctttactggaaacctgatgctctttcaagccatgggattagattaggacg 81090933
Query: 1262 cctggcgcaagctcggctgtgtgtagaacccctcaccgttgcctaggcatcaagcattgc 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81090932 cctggcgcaagctcggctgtgtgtagaacccctcaccgttgcctaggcatcaagcattgc 81090873
Query: 1322 tgttcctagtacttcaagtctagggtgtattttccatttgtactgtgttctctagcacat 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81090872 tgttcctagtacttcaagtctagggtgtattttccatttgtactgtgttctctagcacat 81090813
Query: 1382 ttagaaggattactttcttttccc 1405
||||||||||||||||||||||||
Sbjct: 81090812 ttagaaggattactttcttttccc 81090789
Score = 351 bits (177), Expect = 8e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 463 ggcatatttgttcagcttgttcaggcaaattctccagcctcattagttgggctgcgattc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81094778 ggcatatttgttcagcttgttcaggcaaattctccagcctcattagttgggctgcgattc 81094719
Query: 523 ggggaccaggtgctccagatcaacggggagaactgtgcaggctggagctcggaccgggcc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81094718 ggggaccaggtgctccagatcaacggggagaactgtgcaggctggagctcggaccgggcc 81094659
Query: 583 cacaaggtgctcaagcaagcctttggagagaaaattaccatgaccattcgggaccgg 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81094658 cacaaggtgctcaagcaagcctttggagagaaaattaccatgaccattcgggaccgg 81094602
Score = 345 bits (174), Expect = 5e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 638 ggccctttgaacggacagttaccatgcataaggacagtactggacatgttggctttatct 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81093253 ggccctttgaacggacagttaccatgcataaggacagtactggacatgttggctttatct 81093194
Query: 698 tcaaaaacgggaagatcacctccatagtgaaggacagttctgcagccagaaacggccttc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81093193 tcaaaaacgggaagatcacctccatagtgaaggacagttctgcagccagaaacggccttc 81093134
Query: 758 tcacagaacacagcatctgcgaggtcaatggacagaatgtcattggactaaagg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81093133 tcacagaacacagcatctgcgaggtcaatggacagaatgtcattggactaaagg 81093080
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 300 gcagttggttgcaagaccttccagcatgaactatatggtggctcctgtaactggtaatga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81096693 gcagttggttgcaagaccttccagcatgaactatatggtggctcctgtaactggtaatga 81096634
Query: 360 cgctggaatccgtagagcagaaattaagcaagggattcgtgaagtcattttatgtaagga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81096633 cgctggaatccgtagagcagaaattaagcaagggattcgtgaagtcattttatgtaagga 81096574
Query: 420 tcaagatggaaaaattgggctcaggcttaaatcagtagataatg 463
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81096573 tcaagatggaaaaattgggctcaggcttaaatcagtagataatg 81096530
Score = 323 bits (163), Expect = 2e-85
Identities = 190/199 (95%)
Strand = Plus / Minus
Query: 1439 aaacacaccagttaagtaacctaatgtgggtttcattccatggaggcatcacagtggctg 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81090755 aaacacaccagttaagtaacctaatgtgggtttcattccatggaggcatcacagtggctg 81090696
Query: 1499 taagctgcagcaagtgtagtgaatatcgttaccttttcactacctttacttactctgctt 1558
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 81090695 taagctgcagcaggtgtagtgaatatcgttacctttcaactacctttacttactctgctt 81090636
Query: 1559 gaactggtcccctaactacattaagcatctaaaatgaaagccaaacttactcttgctgcc 1618
|||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 81090635 gaactgtcgccttaactacattaagcatctagaatgaaagccaaacttactcttgctgcc 81090576
Query: 1619 tttcaaaaaccccaaatgc 1637
|||| ||||||||||||||
Sbjct: 81090575 tttctaaaaccccaaatgc 81090557
Score = 210 bits (106), Expect = 2e-51
Identities = 109/110 (99%)
Strand = Plus / Minus
Query: 191 atctctatcctaaactatatccggagctctctcagtacatgggcctgagtttaaatgaag 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099488 atctctatcctaaactatatccggagctctctcagtacatgggcctgagtttaaatgaag 81099429
Query: 251 aagaaattcatacaaatatggccgtggtccctggagcaccagttcagggg 300
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099428 aagaaattcgtacaaatatggccgtggtccctggagcaccagttcagggg 81099379
Score = 188 bits (95), Expect = 7e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 809 aggactctcagattgcagacatactgtcaacagctgggaatgtcatcactatcacaatca 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81092314 aggactctcagattgcagacatactgtcaacagctgggaatgtcatcactatcacaatca 81092255
Query: 869 tgcctgcttttatcttcgaacatattattaaacgg 903
|||||||||||||||||||||||||||||||||||
Sbjct: 81092254 tgcctgcttttatcttcgaacatattattaaacgg 81092220
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 44 agaaaaatcctgcaaaaatgtctctctacccatctcttgaagacctgaaggtagacaagg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81107010 agaaaaatcctgcaaaaatgtctctctacccatctcttgaagacctgaaggtagacaagg 81106951
Query: 104 tgatccagg 112
|||||||||
Sbjct: 81106950 tgatccagg 81106942
Score = 131 bits (66), Expect = 1e-27
Identities = 79/82 (96%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 109 caggctcaaactgctttttctgcaaaccctgccaacccagcaattttgtctgaagcttct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81101898 caggctcaaactgctttttctgcaaaccctgccaacccagcaattttgtctgaagcttct 81101839
Query: 169 gttcctgtctctcaagatggaa 190
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Sbjct: 81101838 -ttcccttctctcaagatggaa 81101818
Score = 89.7 bits (45), Expect = 5e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 1 tctcggaagtccgagtcagtgaccggaggcggcggcggcgatcag 45
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Sbjct: 81122727 tctcggaagtccgagtcagtgaccggaggcggcggcggcgatcag 81122683
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,520,073
Number of extensions: 247
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 10
Length of query: 1637
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1615
Effective length of database: 2,808,408,574
Effective search space: 4535579847010
Effective search space used: 4535579847010
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)