Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012298
(971 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540090.2| PREDICTED: similar to syntenin isoform 3 isofor... 507 e-151
Alignment gi|XP_857475.1| PREDICTED: similar to Syntenin-1 (Syndecan bind... 477 e-135
Alignment gi|XP_542935.2| PREDICTED: similar to Syntenin-2 (Syndecan bind... 322 6e-91
Alignment gi|XP_848698.1| PREDICTED: similar to amyloid beta (A4) precurs... 58 2e-08
Alignment gi|XP_545817.2| PREDICTED: similar to amyloid beta (A4) precurs... 58 2e-08
Alignment gi|XP_542171.2| PREDICTED: similar to amyloid beta (A4) precurs... 55 1e-07
>ref|XP_540090.2| PREDICTED: similar to syntenin isoform 3 isoform 1 [Canis
familiaris].
Length = 297
Score = 507 bits (1305), Expect(2) = e-151
Identities = 256/276 (92%), Positives = 266/276 (96%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 255
MSLYPSLEDLKVDKV+QAQTAFSANPANPAILSEAS P+SQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVLQAQTAFSANPANPAILSEASAPISQDGNLYPKLYPELSQYMGLS 60
Query: 256 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 435
LN+EEIR NMA+ PGA VQG LVARPSSMNYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNDEEIRANMALAPGASVQG-LVARPSSMNYMVAPVTGNDVGIRRAEIKQGIREVILCKD 119
Query: 436 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 615
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 120 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 179
Query: 616 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 795
AFGEKITMT+RDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 180 AFGEKITMTVRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 239
Query: 796 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
VNGQNVIGLKDSQIADILST+ V+TITIMPAF E
Sbjct: 240 VNGQNVIGLKDSQIADILSTSETVVTITIMPAFIFE 275
Score = 48.1 bits (113), Expect(2) = e-151
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 275 EHIIKRMAPSIMKSLMDHTIPEV 297
>ref|XP_857475.1| PREDICTED: similar to Syntenin-1 (Syndecan binding protein 1)
(Melanoma differentiation-associated protein 9) (MDA-9)
(Scaffold protein Pbp1) (Pro-TGF-alpha cytoplasmic
domain-interacting protein 18) (TACIP18) isoform 2
[Canis familiaris].
Length = 273
Score = 477 bits (1228), Expect = e-135
Identities = 237/250 (94%), Positives = 245/250 (98%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 255
MSLYPSLEDLKVDKV+QAQTAFSANPANPAILSEAS P+SQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVLQAQTAFSANPANPAILSEASAPISQDGNLYPKLYPELSQYMGLS 60
Query: 256 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 435
LN+EEIR NMA+ PGA VQGQLVARPSSMNYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNDEEIRANMALAPGASVQGQLVARPSSMNYMVAPVTGNDVGIRRAEIKQGIREVILCKD 120
Query: 436 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 615
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 180
Query: 616 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 795
AFGEKITMT+RDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTVRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 796 VNGQNVIGLK 825
VNGQNVIGLK
Sbjct: 241 VNGQNVIGLK 250
>ref|XP_542935.2| PREDICTED: similar to Syntenin-2 (Syndecan binding protein 2)
[Canis familiaris].
Length = 287
Score = 322 bits (826), Expect(2) = 6e-91
Identities = 162/270 (60%), Positives = 207/270 (76%)
Frame = +1
Query: 79 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 258
+LYPSLEDLK+D+ IQAQ +A PA+ PVSQ LYP L +L YMGLSL
Sbjct: 3 TLYPSLEDLKMDQAIQAQARAAARM--PAL------PVSQPSVLYPSL-ADLENYMGLSL 53
Query: 259 NEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 438
+ +E++ N+ +P +V S +VAP++GN G RRAEIK G+RE+ LCKD+
Sbjct: 54 SSQEVQQNLLQLPEG---AGMVGSGLSPGQLVAPLSGNSLGTRRAEIKPGVREIYLCKDE 110
Query: 439 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 618
GK GLRL+++D G+FVQLV+ANSPASLVGLRFGDQ+LQI+G +CAGWS+DRAH+VLK+A
Sbjct: 111 HGKTGLRLRAIDQGLFVQLVKANSPASLVGLRFGDQILQIDGRDCAGWSTDRAHRVLKRA 170
Query: 619 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 798
EKI M +RDRPF+RTVTMHKDSTGHVGF+ K G + S+V+ SSAARNGLLT+ S+CEV
Sbjct: 171 SAEKIAMVVRDRPFQRTVTMHKDSTGHVGFVIKKGAVVSVVRGSSAARNGLLTKQSVCEV 230
Query: 799 NGQNVIGLKDSQIADILSTAGNVITITIMP 888
NGQNV+GLKD + +IL+ AGNV+T+TI+P
Sbjct: 231 NGQNVVGLKDKAVTEILAMAGNVVTLTIIP 260
Score = 31.2 bits (69), Expect(2) = 6e-91
Identities = 9/23 (39%), Positives = 20/23 (86%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+H++K+++P+++ MDH+IP+V
Sbjct: 265 EHMVKKLSPTLLHHAMDHSIPDV 287
>ref|XP_848698.1| PREDICTED: similar to amyloid beta (A4) precursor protein-binding,
family A, member 2 isoform 3 [Canis familiaris].
Length = 754
Score = 57.8 bits (138), Expect = 2e-08
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Frame = +1
Query: 511 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 684
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 610 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 669
Query: 685 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 861
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 670 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 729
Query: 862 NVITITIMPA 891
I + MPA
Sbjct: 730 GEIHMKTMPA 739
>ref|XP_545817.2| PREDICTED: similar to amyloid beta (A4) precursor protein-binding,
family A, member 2 isoform 2 [Canis familiaris].
Length = 742
Score = 57.8 bits (138), Expect = 2e-08
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Frame = +1
Query: 511 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 684
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 598 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 657
Query: 685 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 861
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 658 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 717
Query: 862 NVITITIMPA 891
I + MPA
Sbjct: 718 GEIHMKTMPA 727
>ref|XP_542171.2| PREDICTED: similar to amyloid beta (A4) precursor protein-binding,
family A, member 3 [Canis familiaris].
Length = 577
Score = 54.7 bits (130), Expect = 1e-07
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 10/173 (5%)
Frame = +1
Query: 403 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 558
+ REV + K + +G+ L V++G + V AN PA G L GD++ I
Sbjct: 392 ENCREVCIEKRRGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAI 449
Query: 559 NGENCAGWSSDRAHKVLKQAFGEK-ITMTIRDRPFERTVTMHKD-STGHVGFIFKNGKIT 732
NG + G +++ + +T++I P T + + + +GF ++G I
Sbjct: 450 NGTSLVGLPLAACQAAVREVKSQTLVTLSIIHCPPVTTAIIRRPHAREQLGFCVEDGIIC 509
Query: 733 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 891
S+++ A R G+ H I E+NGQ+V+ ++I ++L+ A + I MPA
Sbjct: 510 SLLRGGIAERGGVRVGHRIIEINGQSVVATPHARIIELLTEAHTEVHIKTMPA 562
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,802,641
Number of extensions: 1084993
Number of successful extensions: 3489
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3477
Number of HSP's successfully gapped: 8
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012298
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012298
(971 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068951.1| syntenin-1 [Bos taurus]. 518 e-154
Alignment gi|NP_001192743.1| amyloid beta A4 precursor protein-binding fa... 63 4e-10
Alignment gi|XP_002689680.1| PREDICTED: amyloid beta A4 precursor protein... 63 4e-10
Alignment gi|NP_001029586.1| amyloid beta A4 precursor protein-binding fa... 52 6e-07
>ref|NP_001068951.1| syntenin-1 [Bos taurus].
Length = 298
Score = 518 bits (1333), Expect(2) = e-154
Identities = 258/276 (93%), Positives = 269/276 (97%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 255
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS PVSQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPVSQDGNLYPKLYPELSQYMGLS 60
Query: 256 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 435
LNEEEIR NMA+VPGAP QGQ+VARPSSMN+MVAP+TG D GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANMALVPGAPSQGQVVARPSSMNHMVAPITGGDIGIRRAEIKQGIREVILCKD 120
Query: 436 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 615
QDGKIGLRLKS+DNGIFVQLVQANSP+SLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPSSLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 180
Query: 616 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 795
AFGEKITMTIRDRPFERT+TMHKDSTGHVGF+FKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTIRDRPFERTITMHKDSTGHVGFVFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 796 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
VNGQNVIGLKDSQIADILSTAGN++TITIMPAF E
Sbjct: 241 VNGQNVIGLKDSQIADILSTAGNIVTITIMPAFIFE 276
Score = 48.1 bits (113), Expect(2) = e-154
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 276 EHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_001192743.1| amyloid beta A4 precursor protein-binding family A member 1 [Bos
taurus].
Length = 835
Score = 62.8 bits (151), Expect = 4e-10
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Frame = +1
Query: 427 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 567
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 652 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 710
Query: 568 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 741
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 711 SLVGLPLSTCQSIIKGLKNQARVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 770
Query: 742 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 891
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA
Sbjct: 771 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 820
>ref|XP_002689680.1| PREDICTED: amyloid beta A4 precursor protein-binding family A member
1-like [Bos taurus].
Length = 835
Score = 62.8 bits (151), Expect = 4e-10
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Frame = +1
Query: 427 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 567
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 652 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 710
Query: 568 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 741
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 711 SLVGLPLSTCQSIIKGLKNQARVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 770
Query: 742 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 891
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA
Sbjct: 771 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 820
>ref|NP_001029586.1| amyloid beta A4 precursor protein-binding family A member 3 [Bos
taurus].
Length = 578
Score = 52.4 bits (124), Expect = 6e-07
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Frame = +1
Query: 403 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 558
+ REV + K + +G+ L V++G + V AN PA G L GD++ I
Sbjct: 393 ENCREVFIEKRRGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRITAI 450
Query: 559 NGENCAGWSSDRAHKVLKQAFGEK-ITMTIRDRPFERTVTMHKDSTGH-VGFIFKNGKIT 732
NG + G +++ + +T++I P T + + +GF ++G I
Sbjct: 451 NGTSLVGLPLAACQAAVREVKSQTLVTLSIVHCPPVTTAIIRRPHVREQLGFCVEDGIIC 510
Query: 733 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 891
S+++ A R G+ H I E+NG +V+ ++I ++L+ A + I MPA
Sbjct: 511 SLLRGGIAERGGVRVGHRIIEINGHSVVATPHARIIELLTEAHIEVHIKTMPA 563
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,096,359
Number of extensions: 1050908
Number of successful extensions: 3277
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3260
Number of HSP's successfully gapped: 5
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012298
(971 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125665.1| PREDICTED: syntenin-1 isoform 1 [Sus scrofa]. 545 e-163
Alignment gi|XP_003355100.1| PREDICTED: syntenin-1 isoform 2 [Sus scrofa]. 517 e-154
Alignment gi|XP_003134388.1| PREDICTED: syntenin-2-like [Sus scrofa]. 324 1e-91
Alignment gi|XP_003121990.2| PREDICTED: amyloid beta A4 precursor protein... 63 3e-10
Alignment gi|XP_003123103.1| PREDICTED: amyloid beta A4 precursor protein... 52 6e-07
>ref|XP_003125665.1| PREDICTED: syntenin-1 isoform 1 [Sus scrofa].
Length = 362
Score = 545 bits (1403), Expect(2) = e-163
Identities = 278/281 (98%), Positives = 278/281 (98%)
Frame = +1
Query: 61 KNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQ 240
KNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQ
Sbjct: 60 KNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQ 119
Query: 241 YMGLSLNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREV 420
YMGLSLNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREV
Sbjct: 120 YMGLSLNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREV 179
Query: 421 ILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAH 600
ILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAH
Sbjct: 180 ILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAH 239
Query: 601 KVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTE 780
KVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGF FKNGKITSIVKDSSAARNGLLTE
Sbjct: 240 KVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGFSFKNGKITSIVKDSSAARNGLLTE 299
Query: 781 HSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
HSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAF E
Sbjct: 300 HSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFE 340
Score = 48.1 bits (113), Expect(2) = e-163
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 340 EHIIKRMAPSIMKSLMDHTIPEV 362
>ref|XP_003355100.1| PREDICTED: syntenin-1 isoform 2 [Sus scrofa].
Length = 292
Score = 517 bits (1331), Expect(2) = e-154
Identities = 267/276 (96%), Positives = 267/276 (96%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 255
MSLYPSLEDLK AQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLK------AQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 54
Query: 256 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 435
LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD
Sbjct: 55 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 114
Query: 436 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 615
QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ
Sbjct: 115 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 174
Query: 616 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 795
AFGEKITMTIRDRPFERTVTMHKDSTGHVGF FKNGKITSIVKDSSAARNGLLTEHSICE
Sbjct: 175 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFSFKNGKITSIVKDSSAARNGLLTEHSICE 234
Query: 796 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
VNGQNVIGLKDSQIADILSTAGNVITITIMPAF E
Sbjct: 235 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFE 270
Score = 48.1 bits (113), Expect(2) = e-154
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 270 EHIIKRMAPSIMKSLMDHTIPEV 292
>ref|XP_003134388.1| PREDICTED: syntenin-2-like [Sus scrofa].
Length = 291
Score = 324 bits (830), Expect(2) = 1e-91
Identities = 164/273 (60%), Positives = 206/273 (75%), Gaps = 3/273 (1%)
Frame = +1
Query: 79 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYP---ELSQYMG 249
+LYPSLEDLKVD+ +QAQ P PA+ PV + + P LYP EL YMG
Sbjct: 3 TLYPSLEDLKVDQAMQAQARVV--PRMPAL------PVPEHDSRPPVLYPNLAELENYMG 54
Query: 250 LSLNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILC 429
LSL+ +E++ N+ P P + SS +VAPV+GN G+ RAEIK G+RE+ LC
Sbjct: 55 LSLSSQEVQQNL---PQIPEGARAAVSGSSPGQLVAPVSGNSLGVLRAEIKPGVREIHLC 111
Query: 430 KDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVL 609
KD GK GLRL+++D G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGWS+D+AH+ +
Sbjct: 112 KDDRGKTGLRLRAIDKGVFVQLVQANTPASLVGLRFGDQILQIDGRDCAGWSTDKAHRAV 171
Query: 610 KQAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSI 789
K+A EKI M +RDRPF+RTVTMHKDSTGHVGF+ K GK+ S+VK SSAARNGLLT H +
Sbjct: 172 KKASAEKIVMIVRDRPFQRTVTMHKDSTGHVGFVIKKGKVISLVKGSSAARNGLLTNHYV 231
Query: 790 CEVNGQNVIGLKDSQIADILSTAGNVITITIMP 888
CEVNGQNVIGLKD ++ +IL+TAGNVIT+TI+P
Sbjct: 232 CEVNGQNVIGLKDKEVTEILATAGNVITLTIIP 264
Score = 31.2 bits (69), Expect(2) = 1e-91
Identities = 9/23 (39%), Positives = 20/23 (86%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+H++K+++P+++ MDH+IP+V
Sbjct: 269 EHMVKKLSPTLLHHTMDHSIPDV 291
>ref|XP_003121990.2| PREDICTED: amyloid beta A4 precursor protein-binding family A
member 1, partial [Sus scrofa].
Length = 391
Score = 62.8 bits (151), Expect = 3e-10
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Frame = +1
Query: 427 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 567
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 208 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 266
Query: 568 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 741
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 267 SLVGLPLSTCQSIIKGLKNQARVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 326
Query: 742 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 891
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA
Sbjct: 327 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 376
>ref|XP_003123103.1| PREDICTED: amyloid beta A4 precursor protein-binding family A
member 3 [Sus scrofa].
Length = 587
Score = 51.6 bits (122), Expect = 6e-07
Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 10/173 (5%)
Frame = +1
Query: 403 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 558
+ REV + K + +G+ L V++G + V AN PA G L GD++ I
Sbjct: 402 ENCREVCIEKRRGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRITAI 459
Query: 559 NGENCAGWSSDRAHKVLKQAFGEK-ITMTIRDRPFERTVTMHKDSTGH-VGFIFKNGKIT 732
NG + G +++ + +T++I P T + + +GF ++G I
Sbjct: 460 NGTSLVGLPLAACQAAVREVKSQTLVTLSIVHCPPVTTAIIRRPHVREQLGFCVEDGIIC 519
Query: 733 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 891
S+++ A R G+ H I E+NG +V+ +I ++L+ A + I MPA
Sbjct: 520 SLLRGGIAERGGVRVGHRIIEINGHSVVATPHDRIIELLTEAHIEVHIKTMPA 572
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,501,120
Number of extensions: 674620
Number of successful extensions: 2162
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2152
Number of HSP's successfully gapped: 8
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012298
(971 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091697.1| syntenin-1 isoform 1 [Mus musculus]. 479 e-143
Alignment gi|NP_058087.2| syntenin-1 isoform 2 [Mus musculus]. 473 e-141
Alignment gi|NP_663510.1| syntenin-2 [Mus musculus]. 316 8e-89
Alignment gi|NP_796008.2| amyloid beta (A4) precursor protein binding, fa... 63 4e-10
Alignment gi|NP_031487.1| amyloid beta A4 precursor protein-binding famil... 58 1e-08
Alignment gi|NP_061228.1| amyloid beta A4 precursor protein-binding famil... 55 6e-08
Alignment gi|NP_598850.1| protein scribble homolog [Mus musculus]. 50 3e-06
>ref|NP_001091697.1| syntenin-1 isoform 1 [Mus musculus].
Length = 299
Score = 479 bits (1233), Expect(2) = e-143
Identities = 243/277 (87%), Positives = 259/277 (93%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPA-ILSEASVPVSQDGNLYPKLYPELSQYMGL 252
MSLYPSLEDLKVDKVIQAQTA+SANPA+ A +L +AS + DGNLYPKLYPELSQYMGL
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAYSANPASQAFVLVDASAALPPDGNLYPKLYPELSQYMGL 60
Query: 253 SLNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCK 432
SLNE EI +M +V GAP QGQLVARPSS+NYMVAPVTGNDAGIRRAEIKQGIREVILCK
Sbjct: 61 SLNEAEICESMPMVSGAPAQGQLVARPSSVNYMVAPVTGNDAGIRRAEIKQGIREVILCK 120
Query: 433 DQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLK 612
DQDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLK
Sbjct: 121 DQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLK 180
Query: 613 QAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSIC 792
QAFGEKITMTIRDRPFERTVTMHKDS+GHVGFIFK+GKITSIVKDSSAARNGLLT+H IC
Sbjct: 181 QAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIVKDSSAARNGLLTDHHIC 240
Query: 793 EVNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
E+NGQNVIGLKD+QIADILSTAG V+TITIMP F E
Sbjct: 241 EINGQNVIGLKDAQIADILSTAGTVVTITIMPTFIFE 277
Score = 48.1 bits (113), Expect(2) = e-143
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 277 EHIIKRMAPSIMKSLMDHTIPEV 299
>ref|NP_058087.2| syntenin-1 isoform 2 [Mus musculus].
Length = 298
Score = 473 bits (1216), Expect(2) = e-141
Identities = 242/277 (87%), Positives = 258/277 (93%), Gaps = 1/277 (0%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPA-ILSEASVPVSQDGNLYPKLYPELSQYMGL 252
MSLYPSLEDLKVDKVIQAQTA+SANPA+ A +L +AS + DGNLYPKLYPELSQYMGL
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAYSANPASQAFVLVDASAALPPDGNLYPKLYPELSQYMGL 60
Query: 253 SLNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCK 432
SLNE EI +M +V GAP QG LVARPSS+NYMVAPVTGNDAGIRRAEIKQGIREVILCK
Sbjct: 61 SLNEAEICESMPMVSGAPAQG-LVARPSSVNYMVAPVTGNDAGIRRAEIKQGIREVILCK 119
Query: 433 DQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLK 612
DQDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLK
Sbjct: 120 DQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLK 179
Query: 613 QAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSIC 792
QAFGEKITMTIRDRPFERTVTMHKDS+GHVGFIFK+GKITSIVKDSSAARNGLLT+H IC
Sbjct: 180 QAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIVKDSSAARNGLLTDHHIC 239
Query: 793 EVNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
E+NGQNVIGLKD+QIADILSTAG V+TITIMP F E
Sbjct: 240 EINGQNVIGLKDAQIADILSTAGTVVTITIMPTFIFE 276
Score = 48.1 bits (113), Expect(2) = e-141
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 276 EHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_663510.1| syntenin-2 [Mus musculus].
Length = 292
Score = 316 bits (810), Expect(2) = 8e-89
Identities = 167/270 (61%), Positives = 208/270 (77%), Gaps = 1/270 (0%)
Frame = +1
Query: 82 LYPSLEDLKVDKVIQAQTAFSAN-PANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 258
LYPSLEDLKV +VIQAQ S P PA ++ A P+S+ LYP L EL YMGLSL
Sbjct: 4 LYPSLEDLKVGQVIQAQGRASPTMPTLPAPMASAP-PLSE---LYPNL-AELESYMGLSL 58
Query: 259 NEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 438
+ +E++ N+ +P + +V +VAPV+GN+ GI RAEIK G+RE+ LCKD+
Sbjct: 59 SSQEVQKNLTQIPDSD---NMVVTSPGPGQVVAPVSGNNLGILRAEIKPGVREIHLCKDE 115
Query: 439 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 618
GK GLRL++VD G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGW++ +AHKVLK+A
Sbjct: 116 RGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQILQIDGCDCAGWNTHKAHKVLKKA 175
Query: 619 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 798
EKI M IRDRPF+RTVTMHKDS+G VGF K GKI S+VK SSAARNGLLT H +CEV
Sbjct: 176 SAEKIVMVIRDRPFQRTVTMHKDSSGQVGFSIKKGKIVSVVKGSSAARNGLLTNHYVCEV 235
Query: 799 NGQNVIGLKDSQIADILSTAGNVITITIMP 888
NGQNVIGLKD ++ +IL+TAG+VIT+TI+P
Sbjct: 236 NGQNVIGLKDKKVTEILTTAGDVITLTIIP 265
Score = 30.0 bits (66), Expect(2) = 8e-89
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPE 967
+H+IKR++P ++ MDH+IP+
Sbjct: 270 EHMIKRLSPLLLHHTMDHSIPD 291
>ref|NP_796008.2| amyloid beta (A4) precursor protein binding, family A, member 1 [Mus
musculus].
Length = 842
Score = 62.8 bits (151), Expect = 4e-10
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Frame = +1
Query: 427 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 567
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 659 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 717
Query: 568 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 741
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 718 SLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 777
Query: 742 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 891
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA
Sbjct: 778 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 827
>ref|NP_031487.1| amyloid beta A4 precursor protein-binding family A member 2 [Mus
musculus].
Length = 750
Score = 57.8 bits (138), Expect = 1e-08
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Frame = +1
Query: 511 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 684
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 606 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 665
Query: 685 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 861
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 666 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 725
Query: 862 NVITITIMPA 891
I + MPA
Sbjct: 726 GEIHMKTMPA 735
>ref|NP_061228.1| amyloid beta A4 precursor protein-binding family A member 3 [Mus
musculus].
Length = 571
Score = 55.5 bits (132), Expect = 6e-08
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Frame = +1
Query: 403 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 558
Q REV + K +G+ L V++G + V AN PA G L GD+V I
Sbjct: 387 QNCREVCIQKRPGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERCGALSIGDRVTAI 444
Query: 559 NGENCAGWSSDRAHKVLKQAFG-EKITMTIRDRPFERTVTMHKDSTGH-VGFIFKNGKIT 732
NG + G S +++ +T++I P T + + +GF ++G I
Sbjct: 445 NGTSLVGLSLAACQAAVREVRRLSSVTLSIIHCPPVTTAVIRRPHVREQLGFCVEDGIIC 504
Query: 733 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 891
S+++ +A R G+ H I EVNGQ+V+ + ++I +L T I I MPA
Sbjct: 505 SLLRGGAAERGGVRVGHRIIEVNGQSVVAMPHARIIQLL-TETREIHIKTMPA 556
>ref|NP_598850.1| protein scribble homolog [Mus musculus].
Length = 1665
Score = 50.1 bits (118), Expect = 3e-06
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Frame = +1
Query: 472 DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQAFGEKITMTIRD 651
D G+F+ V A+ GLR GD++L +NG++ + A L + E + RD
Sbjct: 1019 DPGVFISKVLPRGLAARCGLRVGDRILAVNGQDVREATHQEAVSALLRPCLELCLLVRRD 1078
Query: 652 --RPFERTVTMHKDSTGHVGFIFKNGK----------------ITSIVKDSSAARNG-LL 774
P R + + K +G + G I+ + +A R+G L
Sbjct: 1079 PPPPGMRELCIQKAPGEKLGISIRGGAKGHAGNPCDPTDEGIFISKVSPTGAAGRDGRLR 1138
Query: 775 TEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLET 906
+ EVN Q+++GL ++ +L + G+ +T+ + F+ T
Sbjct: 1139 VGLRLLEVNQQSLLGLTHAEAVQLLRSVGDTLTVLVCDGFDTST 1182
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,269,196
Number of extensions: 909749
Number of successful extensions: 2973
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2951
Number of HSP's successfully gapped: 10
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012298
(971 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007068.1| syntenin-1 isoform 1 [Homo sapiens]. 511 e-153
Alignment gi|NP_005616.2| syntenin-1 isoform 1 [Homo sapiens]. 511 e-153
Alignment gi|NP_001007071.1| syntenin-1 isoform 3 [Homo sapiens]. 505 e-151
Alignment gi|NP_001007070.1| syntenin-1 isoform 3 [Homo sapiens]. 505 e-151
Alignment gi|NP_001007069.1| syntenin-1 isoform 2 [Homo sapiens]. 494 e-147
Alignment gi|NP_001186713.1| syntenin-2 isoform a [Homo sapiens]. 322 8e-90
Alignment gi|NP_536737.3| syntenin-2 isoform a [Homo sapiens]. 322 8e-90
Alignment gi|NP_056500.2| syntenin-2 isoform b [Homo sapiens]. 274 2e-75
Alignment gi|NP_001154.2| amyloid beta A4 precursor protein-binding famil... 63 5e-10
Alignment gi|NP_004877.1| amyloid beta A4 precursor protein-binding famil... 58 1e-08
>ref|NP_001007068.1| syntenin-1 isoform 1 [Homo sapiens].
Length = 298
Score = 511 bits (1317), Expect(2) = e-153
Identities = 255/276 (92%), Positives = 267/276 (96%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 255
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 256 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 435
LNEEEIR N+AVV GAP+QGQLVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 120
Query: 436 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 615
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 180
Query: 616 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 795
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 796 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
+NGQNVIGLKDSQIADILST+G V+TITIMPAF E
Sbjct: 241 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFE 276
Score = 48.1 bits (113), Expect(2) = e-153
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 276 EHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_005616.2| syntenin-1 isoform 1 [Homo sapiens].
Length = 298
Score = 511 bits (1317), Expect(2) = e-153
Identities = 255/276 (92%), Positives = 267/276 (96%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 255
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 256 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 435
LNEEEIR N+AVV GAP+QGQLVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 120
Query: 436 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 615
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 180
Query: 616 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 795
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 796 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
+NGQNVIGLKDSQIADILST+G V+TITIMPAF E
Sbjct: 241 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFE 276
Score = 48.1 bits (113), Expect(2) = e-153
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 276 EHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_001007071.1| syntenin-1 isoform 3 [Homo sapiens].
Length = 297
Score = 505 bits (1300), Expect(2) = e-151
Identities = 254/276 (92%), Positives = 266/276 (96%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 255
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 256 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 435
LNEEEIR N+AVV GAP+QG LVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 119
Query: 436 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 615
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 120 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 179
Query: 616 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 795
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 180 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 239
Query: 796 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
+NGQNVIGLKDSQIADILST+G V+TITIMPAF E
Sbjct: 240 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFE 275
Score = 48.1 bits (113), Expect(2) = e-151
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 275 EHIIKRMAPSIMKSLMDHTIPEV 297
>ref|NP_001007070.1| syntenin-1 isoform 3 [Homo sapiens].
Length = 297
Score = 505 bits (1300), Expect(2) = e-151
Identities = 254/276 (92%), Positives = 266/276 (96%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 255
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 256 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 435
LNEEEIR N+AVV GAP+QG LVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 119
Query: 436 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 615
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 120 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 179
Query: 616 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 795
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 180 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 239
Query: 796 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
+NGQNVIGLKDSQIADILST+G V+TITIMPAF E
Sbjct: 240 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFE 275
Score = 48.1 bits (113), Expect(2) = e-151
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 275 EHIIKRMAPSIMKSLMDHTIPEV 297
>ref|NP_001007069.1| syntenin-1 isoform 2 [Homo sapiens].
Length = 292
Score = 494 bits (1272), Expect(2) = e-147
Identities = 249/276 (90%), Positives = 261/276 (94%)
Frame = +1
Query: 76 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 255
MSLYPSLEDLK AQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLK------AQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 54
Query: 256 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 435
LNEEEIR N+AVV GAP+QGQLVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 55 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 114
Query: 436 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 615
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 115 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 174
Query: 616 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 795
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 175 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 234
Query: 796 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFNLE 903
+NGQNVIGLKDSQIADILST+G V+TITIMPAF E
Sbjct: 235 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFE 270
Score = 48.1 bits (113), Expect(2) = e-147
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPEV 970
+HIIKRMAPSIMKSLMDHTIPEV
Sbjct: 270 EHIIKRMAPSIMKSLMDHTIPEV 292
>ref|NP_001186713.1| syntenin-2 isoform a [Homo sapiens].
Length = 292
Score = 322 bits (825), Expect(2) = 8e-90
Identities = 167/271 (61%), Positives = 210/271 (77%)
Frame = +1
Query: 79 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 258
SLYPSLEDLKVD+ IQAQ A+P PA+ +A+ +S LYP L EL YMGLSL
Sbjct: 3 SLYPSLEDLKVDQAIQAQVR--ASPKMPALPVQATA-ISPPPVLYPNL-AELENYMGLSL 58
Query: 259 NEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 438
+ +E++ ++ +P V+ P MVAPVTG G+RRAEIK G+RE+ LCKD+
Sbjct: 59 SSQEVQESLLQIPEG--DSTAVSGPGP-GQMVAPVTGYSLGVRRAEIKPGVREIHLCKDE 115
Query: 439 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 618
GK GLRL+ VD G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGWSS +AH+V+K+A
Sbjct: 116 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA 175
Query: 619 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 798
G+KI + +RDRPF+RTVTMHKDS GHVGF+ K GKI S+VK SSAARNGLLT H +CEV
Sbjct: 176 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV 235
Query: 799 NGQNVIGLKDSQIADILSTAGNVITITIMPA 891
+GQNVIGLKD +I +IL+TAGNV+T+TI+P+
Sbjct: 236 DGQNVIGLKDKKIMEILATAGNVVTLTIIPS 266
Score = 27.7 bits (60), Expect(2) = 8e-90
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPE 967
+H++K++ P ++ MDH+IP+
Sbjct: 270 EHMVKKLPPVLLHHTMDHSIPD 291
>ref|NP_536737.3| syntenin-2 isoform a [Homo sapiens].
Length = 292
Score = 322 bits (825), Expect(2) = 8e-90
Identities = 167/271 (61%), Positives = 210/271 (77%)
Frame = +1
Query: 79 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 258
SLYPSLEDLKVD+ IQAQ A+P PA+ +A+ +S LYP L EL YMGLSL
Sbjct: 3 SLYPSLEDLKVDQAIQAQVR--ASPKMPALPVQATA-ISPPPVLYPNL-AELENYMGLSL 58
Query: 259 NEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 438
+ +E++ ++ +P V+ P MVAPVTG G+RRAEIK G+RE+ LCKD+
Sbjct: 59 SSQEVQESLLQIPEG--DSTAVSGPGP-GQMVAPVTGYSLGVRRAEIKPGVREIHLCKDE 115
Query: 439 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 618
GK GLRL+ VD G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGWSS +AH+V+K+A
Sbjct: 116 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA 175
Query: 619 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 798
G+KI + +RDRPF+RTVTMHKDS GHVGF+ K GKI S+VK SSAARNGLLT H +CEV
Sbjct: 176 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV 235
Query: 799 NGQNVIGLKDSQIADILSTAGNVITITIMPA 891
+GQNVIGLKD +I +IL+TAGNV+T+TI+P+
Sbjct: 236 DGQNVIGLKDKKIMEILATAGNVVTLTIIPS 266
Score = 27.7 bits (60), Expect(2) = 8e-90
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPE 967
+H++K++ P ++ MDH+IP+
Sbjct: 270 EHMVKKLPPVLLHHTMDHSIPD 291
>ref|NP_056500.2| syntenin-2 isoform b [Homo sapiens].
Length = 207
Score = 274 bits (700), Expect(2) = 2e-75
Identities = 129/181 (71%), Positives = 158/181 (87%)
Frame = +1
Query: 349 MVAPVTGNDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVG 528
MVAPVTG G+RRAEIK G+RE+ LCKD+ GK GLRL+ VD G+FVQLVQAN+PASLVG
Sbjct: 1 MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVG 60
Query: 529 LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGF 708
LRFGDQ+LQI+G +CAGWSS +AH+V+K+A G+KI + +RDRPF+RTVTMHKDS GHVGF
Sbjct: 61 LRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGF 120
Query: 709 IFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMP 888
+ K GKI S+VK SSAARNGLLT H +CEV+GQNVIGLKD +I +IL+TAGNV+T+TI+P
Sbjct: 121 VIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIP 180
Query: 889 A 891
+
Sbjct: 181 S 181
Score = 27.7 bits (60), Expect(2) = 2e-75
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +2
Query: 902 KHIIKRMAPSIMKSLMDHTIPE 967
+H++K++ P ++ MDH+IP+
Sbjct: 185 EHMVKKLPPVLLHHTMDHSIPD 206
>ref|NP_001154.2| amyloid beta A4 precursor protein-binding family A member 1 [Homo
sapiens].
Length = 837
Score = 62.8 bits (151), Expect = 5e-10
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Frame = +1
Query: 427 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 567
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 654 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 712
Query: 568 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 741
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 713 SLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 772
Query: 742 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 891
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA
Sbjct: 773 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 822
>ref|NP_004877.1| amyloid beta A4 precursor protein-binding family A member 3 [Homo
sapiens].
Length = 575
Score = 57.8 bits (138), Expect = 1e-08
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 10/170 (5%)
Frame = +1
Query: 412 REVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQINGE 567
REV L K + +G+ L V++G + V AN PA G L GD++ ING
Sbjct: 393 REVHLEKRRGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGT 450
Query: 568 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHKD-STGHVGFIFKNGKITSIV 741
+ G +++ + +T++I P T +H+ + +GF ++G I S++
Sbjct: 451 SLVGLPLAACQAAVRETKSQTSVTLSIVHCPPVTTAIIHRPHAREQLGFCVEDGIICSLL 510
Query: 742 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 891
+ A R G+ H I E+NGQ+V+ ++I ++L+ A + I MPA
Sbjct: 511 RGGIAERGGIRVGHRIIEINGQSVVATPHARIIELLTEAYGEVHIKTMPA 560
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,089,614
Number of extensions: 1073052
Number of successful extensions: 3519
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3490
Number of HSP's successfully gapped: 20
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012298
(971 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 351 5e-94
>Sscrofa_Chr04
|| Length = 143465943
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 478 ggcatatttgttcagcttgttcaggcaaattctccagcctcattagttgggctgcgattc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81094778 ggcatatttgttcagcttgttcaggcaaattctccagcctcattagttgggctgcgattc 81094719
Query: 538 ggggaccaggtgctccagatcaacggggagaactgtgcaggctggagctcggaccgggcc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81094718 ggggaccaggtgctccagatcaacggggagaactgtgcaggctggagctcggaccgggcc 81094659
Query: 598 cacaaggtgctcaagcaagcctttggagagaaaattaccatgaccattcgggaccgg 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81094658 cacaaggtgctcaagcaagcctttggagagaaaattaccatgaccattcgggaccgg 81094602
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 653 ggccctttgaacggacagttaccatgcataaggacagtactggacatgttggctttatct 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81093253 ggccctttgaacggacagttaccatgcataaggacagtactggacatgttggctttatct 81093194
Query: 713 tcaaaaacgggaagatcacctccatagtgaaggacagttctgcagccagaaacggccttc 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81093193 tcaaaaacgggaagatcacctccatagtgaaggacagttctgcagccagaaacggccttc 81093134
Query: 773 tcacagaacacagcatctgcgaggtcaatggacagaatgtcattggactaaagg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81093133 tcacagaacacagcatctgcgaggtcaatggacagaatgtcattggactaaagg 81093080
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 315 gcagttggttgcaagaccttccagcatgaactatatggtggctcctgtaactggtaatga 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81096693 gcagttggttgcaagaccttccagcatgaactatatggtggctcctgtaactggtaatga 81096634
Query: 375 cgctggaatccgtagagcagaaattaagcaagggattcgtgaagtcattttatgtaagga 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81096633 cgctggaatccgtagagcagaaattaagcaagggattcgtgaagtcattttatgtaagga 81096574
Query: 435 tcaagatggaaaaattgggctcaggcttaaatcagtagataatg 478
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81096573 tcaagatggaaaaattgggctcaggcttaaatcagtagataatg 81096530
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 206 atctctatcctaaactatatccggagctctctcagtacatgggcctgagtttaaatgaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099488 atctctatcctaaactatatccggagctctctcagtacatgggcctgagtttaaatgaag 81099429
Query: 266 aagaaattcgtacaaatatggccgtggtccctggagcaccagttcagggg 315
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099428 aagaaattcgtacaaatatggccgtggtccctggagcaccagttcagggg 81099379
Score = 143 bits (72), Expect = 2e-31
Identities = 91/96 (94%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 824 aggactctcagattgcagacatactgtccacagctgggaatgtcatcactatcacaatca 883
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 81092314 aggactctcagattgcagacatactgtcaacagctgggaatgtcatcactatcacaatca 81092255
Query: 884 tgcctgcttttaatctcgaaacatattattaaacgg 919
||||||||||| |||| |||||||||||||||||
Sbjct: 81092254 tgcctgctttt-atcttcgaacatattattaaacgg 81092220
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 60 gaaaaatcctgcaaaaatgtctctctacccatctcttgaagacctgaaggtagacaaggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81107009 gaaaaatcctgcaaaaatgtctctctacccatctcttgaagacctgaaggtagacaaggt 81106950
Query: 120 gatccagg 127
||||||||
Sbjct: 81106949 gatccagg 81106942
Score = 131 bits (66), Expect = 8e-28
Identities = 79/82 (96%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 124 caggctcaaactgctttttctgcaaaccctgccaacccagcaattttgtctgaagcttct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81101898 caggctcaaactgctttttctgcaaaccctgccaacccagcaattttgtctgaagcttct 81101839
Query: 184 gttcctgtctctcaagatggaa 205
|||| |||||||||||||||
Sbjct: 81101838 -ttcccttctctcaagatggaa 81101818
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 1 tctcggaagtccgagtcagtgaccggaggcggcggcggcgatcaggtacctacggccggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81122727 tctcggaagtccgagtcagtgaccggaggcggcggcggcgatcaggtacctacggccggg 81122668
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 918 ggatggcacccagcatcatgaaaagcctgatggatcacaccatccctgaggtct 971
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Sbjct: 81091292 ggatggcacccagcatcatgaaaagcctgatggatcacaccatccctgaggtct 81091239
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,003,724
Number of extensions: 145
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 9
Length of query: 971
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 950
Effective length of database: 2,808,413,156
Effective search space: 2667992498200
Effective search space used: 2667992498200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)