Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012300
(999 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068951.1| syntenin-1 [Bos taurus]. 557 e-159
Alignment gi|NP_001192743.1| amyloid beta A4 precursor protein-binding fa... 63 5e-10
Alignment gi|XP_002689680.1| PREDICTED: amyloid beta A4 precursor protein... 63 5e-10
Alignment gi|NP_001029586.1| amyloid beta A4 precursor protein-binding fa... 52 6e-07
>ref|NP_001068951.1| syntenin-1 [Bos taurus].
Length = 298
Score = 557 bits (1435), Expect = e-159
Identities = 280/298 (93%), Positives = 291/298 (97%), Gaps = 1/298 (0%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 248
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS PVSQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPVSQDGNLYPKLYPELSQYMGLS 60
Query: 249 LNEEEIRTNMAVVPGAPVQG-LVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 425
LNEEEIR NMA+VPGAP QG +VARPSSMN+MVAP+TG D GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANMALVPGAPSQGQVVARPSSMNHMVAPITGGDIGIRRAEIKQGIREVILCKD 120
Query: 426 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 605
QDGKIGLRLKS+DNGIFVQLVQANSP+SLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPSSLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 180
Query: 606 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 785
AFGEKITMTIRDRPFERT+TMHKDSTGHVGF+FKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTIRDRPFERTITMHKDSTGHVGFVFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 786 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
VNGQNVIGLKDSQIADILSTAGN++TITIMPAFI EHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 VNGQNVIGLKDSQIADILSTAGNIVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_001192743.1| amyloid beta A4 precursor protein-binding family A member 1 [Bos
taurus].
Length = 835
Score = 62.8 bits (151), Expect = 5e-10
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Frame = +3
Query: 417 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 557
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 652 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 710
Query: 558 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 731
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 711 SLVGLPLSTCQSIIKGLKNQARVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 770
Query: 732 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 881
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA
Sbjct: 771 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 820
>ref|XP_002689680.1| PREDICTED: amyloid beta A4 precursor protein-binding family A member
1-like [Bos taurus].
Length = 835
Score = 62.8 bits (151), Expect = 5e-10
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Frame = +3
Query: 417 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 557
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 652 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 710
Query: 558 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 731
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 711 SLVGLPLSTCQSIIKGLKNQARVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 770
Query: 732 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 881
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA
Sbjct: 771 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 820
>ref|NP_001029586.1| amyloid beta A4 precursor protein-binding family A member 3 [Bos
taurus].
Length = 578
Score = 52.4 bits (124), Expect = 6e-07
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Frame = +3
Query: 393 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 548
+ REV + K + +G+ L V++G + V AN PA G L GD++ I
Sbjct: 393 ENCREVFIEKRRGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRITAI 450
Query: 549 NGENCAGWSSDRAHKVLKQAFGEK-ITMTIRDRPFERTVTMHKDSTGH-VGFIFKNGKIT 722
NG + G +++ + +T++I P T + + +GF ++G I
Sbjct: 451 NGTSLVGLPLAACQAAVREVKSQTLVTLSIVHCPPVTTAIIRRPHVREQLGFCVEDGIIC 510
Query: 723 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 881
S+++ A R G+ H I E+NG +V+ ++I ++L+ A + I MPA
Sbjct: 511 SLLRGGIAERGGVRVGHRIIEINGHSVVATPHARIIELLTEAHIEVHIKTMPA 563
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,257,375
Number of extensions: 1113007
Number of successful extensions: 3513
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3494
Number of HSP's successfully gapped: 4
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012300
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012300
(999 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540090.2| PREDICTED: similar to syntenin isoform 3 isofor... 557 e-159
Alignment gi|XP_857475.1| PREDICTED: similar to Syntenin-1 (Syndecan bind... 471 e-133
Alignment gi|XP_542935.2| PREDICTED: similar to Syntenin-2 (Syndecan bind... 354 6e-98
Alignment gi|XP_848698.1| PREDICTED: similar to amyloid beta (A4) precurs... 58 1e-08
Alignment gi|XP_545817.2| PREDICTED: similar to amyloid beta (A4) precurs... 58 1e-08
Alignment gi|XP_542171.2| PREDICTED: similar to amyloid beta (A4) precurs... 55 1e-07
>ref|XP_540090.2| PREDICTED: similar to syntenin isoform 3 isoform 1 [Canis
familiaris].
Length = 297
Score = 557 bits (1436), Expect = e-159
Identities = 279/297 (93%), Positives = 289/297 (97%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 248
MSLYPSLEDLKVDKV+QAQTAFSANPANPAILSEAS P+SQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVLQAQTAFSANPANPAILSEASAPISQDGNLYPKLYPELSQYMGLS 60
Query: 249 LNEEEIRTNMAVVPGAPVQGLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 428
LN+EEIR NMA+ PGA VQGLVARPSSMNYMVAPVTGND GIRRAEIKQGIREVILCKDQ
Sbjct: 61 LNDEEIRANMALAPGASVQGLVARPSSMNYMVAPVTGNDVGIRRAEIKQGIREVILCKDQ 120
Query: 429 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 608
DGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQA
Sbjct: 121 DGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA 180
Query: 609 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 788
FGEKITMT+RDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICEV
Sbjct: 181 FGEKITMTVRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEV 240
Query: 789 NGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
NGQNVIGLKDSQIADILST+ V+TITIMPAFI EHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 NGQNVIGLKDSQIADILSTSETVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 297
>ref|XP_857475.1| PREDICTED: similar to Syntenin-1 (Syndecan binding protein 1)
(Melanoma differentiation-associated protein 9) (MDA-9)
(Scaffold protein Pbp1) (Pro-TGF-alpha cytoplasmic
domain-interacting protein 18) (TACIP18) isoform 2
[Canis familiaris].
Length = 273
Score = 471 bits (1211), Expect = e-133
Identities = 236/250 (94%), Positives = 244/250 (97%), Gaps = 1/250 (0%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 248
MSLYPSLEDLKVDKV+QAQTAFSANPANPAILSEAS P+SQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVLQAQTAFSANPANPAILSEASAPISQDGNLYPKLYPELSQYMGLS 60
Query: 249 LNEEEIRTNMAVVPGAPVQG-LVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 425
LN+EEIR NMA+ PGA VQG LVARPSSMNYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNDEEIRANMALAPGASVQGQLVARPSSMNYMVAPVTGNDVGIRRAEIKQGIREVILCKD 120
Query: 426 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 605
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 180
Query: 606 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 785
AFGEKITMT+RDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTVRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 786 VNGQNVIGLK 815
VNGQNVIGLK
Sbjct: 241 VNGQNVIGLK 250
>ref|XP_542935.2| PREDICTED: similar to Syntenin-2 (Syndecan binding protein 2)
[Canis familiaris].
Length = 287
Score = 354 bits (909), Expect = 6e-98
Identities = 174/296 (58%), Positives = 229/296 (77%)
Frame = +3
Query: 72 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 251
+LYPSLEDLK+D+ IQAQ +A PA+ PVSQ LYP L +L YMGLSL
Sbjct: 3 TLYPSLEDLKMDQAIQAQARAAARM--PAL------PVSQPSVLYPSL-ADLENYMGLSL 53
Query: 252 NEEEIRTNMAVVPGAPVQGLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQD 431
+ +E++ N+ +P G+V S +VAP++GN G RRAEIK G+RE+ LCKD+
Sbjct: 54 SSQEVQQNLLQLPEGA--GMVGSGLSPGQLVAPLSGNSLGTRRAEIKPGVREIYLCKDEH 111
Query: 432 GKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQAF 611
GK GLRL+++D G+FVQLV+ANSPASLVGLRFGDQ+LQI+G +CAGWS+DRAH+VLK+A
Sbjct: 112 GKTGLRLRAIDQGLFVQLVKANSPASLVGLRFGDQILQIDGRDCAGWSTDRAHRVLKRAS 171
Query: 612 GEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVN 791
EKI M +RDRPF+RTVTMHKDSTGHVGF+ K G + S+V+ SSAARNGLLT+ S+CEVN
Sbjct: 172 AEKIAMVVRDRPFQRTVTMHKDSTGHVGFVIKKGAVVSVVRGSSAARNGLLTKQSVCEVN 231
Query: 792 GQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
GQNV+GLKD + +IL+ AGNV+T+TI+P I EH++K+++P+++ MDH+IP+V
Sbjct: 232 GQNVVGLKDKAVTEILAMAGNVVTLTIIPTVIYEHMVKKLSPTLLHHAMDHSIPDV 287
>ref|XP_848698.1| PREDICTED: similar to amyloid beta (A4) precursor protein-binding,
family A, member 2 isoform 3 [Canis familiaris].
Length = 754
Score = 58.2 bits (139), Expect = 1e-08
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Frame = +3
Query: 501 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 674
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 610 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 669
Query: 675 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 851
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 670 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 729
Query: 852 NVITITIMPAFILEHIIKRMAP 917
I + MPA + + + P
Sbjct: 730 GEIHMKTMPAAMFRLLTGQETP 751
>ref|XP_545817.2| PREDICTED: similar to amyloid beta (A4) precursor protein-binding,
family A, member 2 isoform 2 [Canis familiaris].
Length = 742
Score = 58.2 bits (139), Expect = 1e-08
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Frame = +3
Query: 501 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 674
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 598 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 657
Query: 675 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 851
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 658 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 717
Query: 852 NVITITIMPAFILEHIIKRMAP 917
I + MPA + + + P
Sbjct: 718 GEIHMKTMPAAMFRLLTGQETP 739
>ref|XP_542171.2| PREDICTED: similar to amyloid beta (A4) precursor protein-binding,
family A, member 3 [Canis familiaris].
Length = 577
Score = 54.7 bits (130), Expect = 1e-07
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 10/173 (5%)
Frame = +3
Query: 393 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 548
+ REV + K + +G+ L V++G + V AN PA G L GD++ I
Sbjct: 392 ENCREVCIEKRRGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAI 449
Query: 549 NGENCAGWSSDRAHKVLKQAFGEK-ITMTIRDRPFERTVTMHKD-STGHVGFIFKNGKIT 722
NG + G +++ + +T++I P T + + + +GF ++G I
Sbjct: 450 NGTSLVGLPLAACQAAVREVKSQTLVTLSIIHCPPVTTAIIRRPHAREQLGFCVEDGIIC 509
Query: 723 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 881
S+++ A R G+ H I E+NGQ+V+ ++I ++L+ A + I MPA
Sbjct: 510 SLLRGGIAERGGVRVGHRIIEINGQSVVATPHARIIELLTEAHTEVHIKTMPA 562
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,022,656
Number of extensions: 1152137
Number of successful extensions: 3708
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3689
Number of HSP's successfully gapped: 6
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012300
(999 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125665.1| PREDICTED: syntenin-1 isoform 1 [Sus scrofa]. 584 e-167
Alignment gi|XP_003355100.1| PREDICTED: syntenin-1 isoform 2 [Sus scrofa]. 556 e-159
Alignment gi|XP_003134388.1| PREDICTED: syntenin-2-like [Sus scrofa]. 352 2e-97
Alignment gi|XP_003121990.2| PREDICTED: amyloid beta A4 precursor protein... 63 3e-10
Alignment gi|XP_003123103.1| PREDICTED: amyloid beta A4 precursor protein... 52 7e-07
>ref|XP_003125665.1| PREDICTED: syntenin-1 isoform 1 [Sus scrofa].
Length = 362
Score = 584 bits (1505), Expect = e-167
Identities = 300/303 (99%), Positives = 300/303 (99%), Gaps = 1/303 (0%)
Frame = +3
Query: 54 KNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQ 233
KNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQ
Sbjct: 60 KNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQ 119
Query: 234 YMGLSLNEEEIRTNMAVVPGAPVQG-LVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREV 410
YMGLSLNEEEIRTNMAVVPGAPVQG LVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREV
Sbjct: 120 YMGLSLNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREV 179
Query: 411 ILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAH 590
ILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAH
Sbjct: 180 ILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAH 239
Query: 591 KVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTE 770
KVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGF FKNGKITSIVKDSSAARNGLLTE
Sbjct: 240 KVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGFSFKNGKITSIVKDSSAARNGLLTE 299
Query: 771 HSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTI 950
HSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFI EHIIKRMAPSIMKSLMDHTI
Sbjct: 300 HSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTI 359
Query: 951 PEV 959
PEV
Sbjct: 360 PEV 362
>ref|XP_003355100.1| PREDICTED: syntenin-1 isoform 2 [Sus scrofa].
Length = 292
Score = 556 bits (1433), Expect = e-159
Identities = 289/298 (96%), Positives = 289/298 (96%), Gaps = 1/298 (0%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 248
MSLYPSLEDLK AQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLK------AQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 54
Query: 249 LNEEEIRTNMAVVPGAPVQG-LVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 425
LNEEEIRTNMAVVPGAPVQG LVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD
Sbjct: 55 LNEEEIRTNMAVVPGAPVQGQLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 114
Query: 426 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 605
QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ
Sbjct: 115 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 174
Query: 606 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 785
AFGEKITMTIRDRPFERTVTMHKDSTGHVGF FKNGKITSIVKDSSAARNGLLTEHSICE
Sbjct: 175 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFSFKNGKITSIVKDSSAARNGLLTEHSICE 234
Query: 786 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
VNGQNVIGLKDSQIADILSTAGNVITITIMPAFI EHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 235 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 292
>ref|XP_003134388.1| PREDICTED: syntenin-2-like [Sus scrofa].
Length = 291
Score = 352 bits (903), Expect = 2e-97
Identities = 177/302 (58%), Positives = 229/302 (75%), Gaps = 6/302 (1%)
Frame = +3
Query: 72 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYP---ELSQYMG 242
+LYPSLEDLKVD+ +QAQ P PA+ PV + + P LYP EL YMG
Sbjct: 3 TLYPSLEDLKVDQAMQAQARVV--PRMPAL------PVPEHDSRPPVLYPNLAELENYMG 54
Query: 243 LSLNEEEIRTNMAVVPG---APVQGLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVI 413
LSL+ +E++ N+ +P A V G SS +VAPV+GN G+ RAEIK G+RE+
Sbjct: 55 LSLSSQEVQQNLPQIPEGARAAVSG-----SSPGQLVAPVSGNSLGVLRAEIKPGVREIH 109
Query: 414 LCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHK 593
LCKD GK GLRL+++D G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGWS+D+AH+
Sbjct: 110 LCKDDRGKTGLRLRAIDKGVFVQLVQANTPASLVGLRFGDQILQIDGRDCAGWSTDKAHR 169
Query: 594 VLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH 773
+K+A EKI M +RDRPF+RTVTMHKDSTGHVGF+ K GK+ S+VK SSAARNGLLT H
Sbjct: 170 AVKKASAEKIVMIVRDRPFQRTVTMHKDSTGHVGFVIKKGKVISLVKGSSAARNGLLTNH 229
Query: 774 SICEVNGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIP 953
+CEVNGQNVIGLKD ++ +IL+TAGNVIT+TI+P I EH++K+++P+++ MDH+IP
Sbjct: 230 YVCEVNGQNVIGLKDKEVTEILATAGNVITLTIIPTVIYEHMVKKLSPTLLHHTMDHSIP 289
Query: 954 EV 959
+V
Sbjct: 290 DV 291
>ref|XP_003121990.2| PREDICTED: amyloid beta A4 precursor protein-binding family A
member 1, partial [Sus scrofa].
Length = 391
Score = 62.8 bits (151), Expect = 3e-10
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Frame = +3
Query: 417 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 557
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 208 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 266
Query: 558 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 731
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 267 SLVGLPLSTCQSIIKGLKNQARVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 326
Query: 732 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 881
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA
Sbjct: 327 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 376
>ref|XP_003123103.1| PREDICTED: amyloid beta A4 precursor protein-binding family A
member 3 [Sus scrofa].
Length = 587
Score = 51.6 bits (122), Expect = 7e-07
Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 10/173 (5%)
Frame = +3
Query: 393 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 548
+ REV + K + +G+ L V++G + V AN PA G L GD++ I
Sbjct: 402 ENCREVCIEKRRGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRITAI 459
Query: 549 NGENCAGWSSDRAHKVLKQAFGEK-ITMTIRDRPFERTVTMHKDSTGH-VGFIFKNGKIT 722
NG + G +++ + +T++I P T + + +GF ++G I
Sbjct: 460 NGTSLVGLPLAACQAAVREVKSQTLVTLSIVHCPPVTTAIIRRPHVREQLGFCVEDGIIC 519
Query: 723 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 881
S+++ A R G+ H I E+NG +V+ +I ++L+ A + I MPA
Sbjct: 520 SLLRGGIAERGGVRVGHRIIEINGHSVVATPHDRIIELLTEAHIEVHIKTMPA 572
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,259,253
Number of extensions: 714918
Number of successful extensions: 2284
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2267
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012300
(999 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058087.2| syntenin-1 isoform 2 [Mus musculus]. 523 e-149
Alignment gi|NP_001091697.1| syntenin-1 isoform 1 [Mus musculus]. 518 e-147
Alignment gi|NP_663510.1| syntenin-2 [Mus musculus]. 345 4e-95
Alignment gi|NP_796008.2| amyloid beta (A4) precursor protein binding, fa... 63 4e-10
Alignment gi|NP_031487.1| amyloid beta A4 precursor protein-binding famil... 58 1e-08
Alignment gi|NP_061228.1| amyloid beta A4 precursor protein-binding famil... 55 6e-08
Alignment gi|NP_598850.1| protein scribble homolog [Mus musculus]. 49 8e-06
>ref|NP_058087.2| syntenin-1 isoform 2 [Mus musculus].
Length = 298
Score = 523 bits (1347), Expect = e-149
Identities = 265/298 (88%), Positives = 281/298 (94%), Gaps = 1/298 (0%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPA-ILSEASVPVSQDGNLYPKLYPELSQYMGL 245
MSLYPSLEDLKVDKVIQAQTA+SANPA+ A +L +AS + DGNLYPKLYPELSQYMGL
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAYSANPASQAFVLVDASAALPPDGNLYPKLYPELSQYMGL 60
Query: 246 SLNEEEIRTNMAVVPGAPVQGLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 425
SLNE EI +M +V GAP QGLVARPSS+NYMVAPVTGNDAGIRRAEIKQGIREVILCKD
Sbjct: 61 SLNEAEICESMPMVSGAPAQGLVARPSSVNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 120
Query: 426 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 605
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 180
Query: 606 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 785
AFGEKITMTIRDRPFERTVTMHKDS+GHVGFIFK+GKITSIVKDSSAARNGLLT+H ICE
Sbjct: 181 AFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIVKDSSAARNGLLTDHHICE 240
Query: 786 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
+NGQNVIGLKD+QIADILSTAG V+TITIMP FI EHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 INGQNVIGLKDAQIADILSTAGTVVTITIMPTFIFEHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_001091697.1| syntenin-1 isoform 1 [Mus musculus].
Length = 299
Score = 518 bits (1335), Expect = e-147
Identities = 265/299 (88%), Positives = 281/299 (93%), Gaps = 2/299 (0%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPA-ILSEASVPVSQDGNLYPKLYPELSQYMGL 245
MSLYPSLEDLKVDKVIQAQTA+SANPA+ A +L +AS + DGNLYPKLYPELSQYMGL
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAYSANPASQAFVLVDASAALPPDGNLYPKLYPELSQYMGL 60
Query: 246 SLNEEEIRTNMAVVPGAPVQG-LVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCK 422
SLNE EI +M +V GAP QG LVARPSS+NYMVAPVTGNDAGIRRAEIKQGIREVILCK
Sbjct: 61 SLNEAEICESMPMVSGAPAQGQLVARPSSVNYMVAPVTGNDAGIRRAEIKQGIREVILCK 120
Query: 423 DQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLK 602
DQDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLK
Sbjct: 121 DQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLK 180
Query: 603 QAFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSIC 782
QAFGEKITMTIRDRPFERTVTMHKDS+GHVGFIFK+GKITSIVKDSSAARNGLLT+H IC
Sbjct: 181 QAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIVKDSSAARNGLLTDHHIC 240
Query: 783 EVNGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
E+NGQNVIGLKD+QIADILSTAG V+TITIMP FI EHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 EINGQNVIGLKDAQIADILSTAGTVVTITIMPTFIFEHIIKRMAPSIMKSLMDHTIPEV 299
>ref|NP_663510.1| syntenin-2 [Mus musculus].
Length = 292
Score = 345 bits (884), Expect = 4e-95
Identities = 179/295 (60%), Positives = 227/295 (76%), Gaps = 1/295 (0%)
Frame = +3
Query: 75 LYPSLEDLKVDKVIQAQTAFSAN-PANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 251
LYPSLEDLKV +VIQAQ S P PA ++ A P+S+ LYP L EL YMGLSL
Sbjct: 4 LYPSLEDLKVGQVIQAQGRASPTMPTLPAPMASAP-PLSE---LYPNL-AELESYMGLSL 58
Query: 252 NEEEIRTNMAVVPGAPVQGLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQD 431
+ +E++ N+ +P + +V +VAPV+GN+ GI RAEIK G+RE+ LCKD+
Sbjct: 59 SSQEVQKNLTQIPDS--DNMVVTSPGPGQVVAPVSGNNLGILRAEIKPGVREIHLCKDER 116
Query: 432 GKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQAF 611
GK GLRL++VD G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGW++ +AHKVLK+A
Sbjct: 117 GKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQILQIDGCDCAGWNTHKAHKVLKKAS 176
Query: 612 GEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVN 791
EKI M IRDRPF+RTVTMHKDS+G VGF K GKI S+VK SSAARNGLLT H +CEVN
Sbjct: 177 AEKIVMVIRDRPFQRTVTMHKDSSGQVGFSIKKGKIVSVVKGSSAARNGLLTNHYVCEVN 236
Query: 792 GQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPE 956
GQNVIGLKD ++ +IL+TAG+VIT+TI+P I EH+IKR++P ++ MDH+IP+
Sbjct: 237 GQNVIGLKDKKVTEILTTAGDVITLTIIPTVIYEHMIKRLSPLLLHHTMDHSIPD 291
>ref|NP_796008.2| amyloid beta (A4) precursor protein binding, family A, member 1 [Mus
musculus].
Length = 842
Score = 62.8 bits (151), Expect = 4e-10
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Frame = +3
Query: 417 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 557
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 659 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 717
Query: 558 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 731
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 718 SLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 777
Query: 732 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 881
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA
Sbjct: 778 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 827
>ref|NP_031487.1| amyloid beta A4 precursor protein-binding family A member 2 [Mus
musculus].
Length = 750
Score = 58.2 bits (139), Expect = 1e-08
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Frame = +3
Query: 501 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 674
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 606 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 665
Query: 675 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 851
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 666 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 725
Query: 852 NVITITIMPAFILEHIIKRMAP 917
I + MPA + + + P
Sbjct: 726 GEIHMKTMPAAMFRLLTGQETP 747
>ref|NP_061228.1| amyloid beta A4 precursor protein-binding family A member 3 [Mus
musculus].
Length = 571
Score = 55.5 bits (132), Expect = 6e-08
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Frame = +3
Query: 393 QGIREVILCKDQDGKIGLRLKSVDNG---IFVQLVQAN----SPASLVG-LRFGDQVLQI 548
Q REV + K +G+ L V++G + V AN PA G L GD+V I
Sbjct: 387 QNCREVCIQKRPGEGLGVAL--VESGWGSLLPTAVIANLLHGGPAERCGALSIGDRVTAI 444
Query: 549 NGENCAGWSSDRAHKVLKQAFG-EKITMTIRDRPFERTVTMHKDSTGH-VGFIFKNGKIT 722
NG + G S +++ +T++I P T + + +GF ++G I
Sbjct: 445 NGTSLVGLSLAACQAAVREVRRLSSVTLSIIHCPPVTTAVIRRPHVREQLGFCVEDGIIC 504
Query: 723 SIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 881
S+++ +A R G+ H I EVNGQ+V+ + ++I +L T I I MPA
Sbjct: 505 SLLRGGAAERGGVRVGHRIIEVNGQSVVAMPHARIIQLL-TETREIHIKTMPA 556
>ref|NP_598850.1| protein scribble homolog [Mus musculus].
Length = 1665
Score = 48.5 bits (114), Expect = 8e-06
Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 24/267 (8%)
Frame = +3
Query: 156 AILSEASVPVS-----QDGNLYPKLYPELSQYMGLSLNEEEIRTNMAVVPGAPVQGLVAR 320
++L+ AS +S + G YP P S + + T VPG P+ ++
Sbjct: 919 SLLTAASPTISLLLERETGGTYPPSPPPHSSPTPAATVAATVST---AVPGEPLLPRLSP 975
Query: 321 PSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANS 500
+ P + + RA G+ V G++ D G+F+ V
Sbjct: 976 SLLATALEGPYPVEEICLPRAGGPLGLSIVGGSDHSSHPFGVQ----DPGVFISKVLPRG 1031
Query: 501 PASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQAFGEKITMTIRD--RPFERTVTMHK 674
A+ GLR GD++L +NG++ + A L + E + RD P R + + K
Sbjct: 1032 LAARCGLRVGDRILAVNGQDVREATHQEAVSALLRPCLELCLLVRRDPPPPGMRELCIQK 1091
Query: 675 DSTGHVGFIFKNGK----------------ITSIVKDSSAARNG-LLTEHSICEVNGQNV 803
+G + G I+ + +A R+G L + EVN Q++
Sbjct: 1092 APGEKLGISIRGGAKGHAGNPCDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSL 1151
Query: 804 IGLKDSQIADILSTAGNVITITIMPAF 884
+GL ++ +L + G+ +T+ + F
Sbjct: 1152 LGLTHAEAVQLLRSVGDTLTVLVCDGF 1178
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,283,152
Number of extensions: 964534
Number of successful extensions: 3080
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3054
Number of HSP's successfully gapped: 7
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012300
(999 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007071.1| syntenin-1 isoform 3 [Homo sapiens]. 555 e-158
Alignment gi|NP_001007070.1| syntenin-1 isoform 3 [Homo sapiens]. 555 e-158
Alignment gi|NP_001007068.1| syntenin-1 isoform 1 [Homo sapiens]. 551 e-157
Alignment gi|NP_005616.2| syntenin-1 isoform 1 [Homo sapiens]. 551 e-157
Alignment gi|NP_001007069.1| syntenin-1 isoform 2 [Homo sapiens]. 533 e-152
Alignment gi|NP_001186713.1| syntenin-2 isoform a [Homo sapiens]. 347 1e-95
Alignment gi|NP_536737.3| syntenin-2 isoform a [Homo sapiens]. 347 1e-95
Alignment gi|NP_056500.2| syntenin-2 isoform b [Homo sapiens]. 299 2e-81
Alignment gi|NP_001154.2| amyloid beta A4 precursor protein-binding famil... 63 5e-10
Alignment gi|NP_001123886.1| amyloid beta A4 precursor protein-binding fa... 58 1e-08
>ref|NP_001007071.1| syntenin-1 isoform 3 [Homo sapiens].
Length = 297
Score = 555 bits (1431), Expect = e-158
Identities = 277/297 (93%), Positives = 289/297 (97%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 248
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 249 LNEEEIRTNMAVVPGAPVQGLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 428
LNEEEIR N+AVV GAP+QGLVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKDQ
Sbjct: 61 LNEEEIRANVAVVSGAPLQGLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKDQ 120
Query: 429 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 608
DGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQA
Sbjct: 121 DGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA 180
Query: 609 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 788
FGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE+
Sbjct: 181 FGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEI 240
Query: 789 NGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
NGQNVIGLKDSQIADILST+G V+TITIMPAFI EHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 NGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 297
>ref|NP_001007070.1| syntenin-1 isoform 3 [Homo sapiens].
Length = 297
Score = 555 bits (1431), Expect = e-158
Identities = 277/297 (93%), Positives = 289/297 (97%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 248
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 249 LNEEEIRTNMAVVPGAPVQGLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQ 428
LNEEEIR N+AVV GAP+QGLVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKDQ
Sbjct: 61 LNEEEIRANVAVVSGAPLQGLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKDQ 120
Query: 429 DGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQA 608
DGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQA
Sbjct: 121 DGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA 180
Query: 609 FGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEV 788
FGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE+
Sbjct: 181 FGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEI 240
Query: 789 NGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
NGQNVIGLKDSQIADILST+G V+TITIMPAFI EHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 NGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 297
>ref|NP_001007068.1| syntenin-1 isoform 1 [Homo sapiens].
Length = 298
Score = 551 bits (1419), Expect = e-157
Identities = 277/298 (92%), Positives = 289/298 (96%), Gaps = 1/298 (0%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 248
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 249 LNEEEIRTNMAVVPGAPVQG-LVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 425
LNEEEIR N+AVV GAP+QG LVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 120
Query: 426 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 605
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 180
Query: 606 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 785
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 786 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
+NGQNVIGLKDSQIADILST+G V+TITIMPAFI EHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_005616.2| syntenin-1 isoform 1 [Homo sapiens].
Length = 298
Score = 551 bits (1419), Expect = e-157
Identities = 277/298 (92%), Positives = 289/298 (96%), Gaps = 1/298 (0%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 248
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 60
Query: 249 LNEEEIRTNMAVVPGAPVQG-LVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 425
LNEEEIR N+AVV GAP+QG LVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 61 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 120
Query: 426 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 605
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 121 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 180
Query: 606 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 785
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 181 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 240
Query: 786 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
+NGQNVIGLKDSQIADILST+G V+TITIMPAFI EHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 241 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 298
>ref|NP_001007069.1| syntenin-1 isoform 2 [Homo sapiens].
Length = 292
Score = 533 bits (1374), Expect = e-152
Identities = 271/298 (90%), Positives = 283/298 (94%), Gaps = 1/298 (0%)
Frame = +3
Query: 69 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLS 248
MSLYPSLEDLK AQTAFSANPANPAILSEAS P+ DGNLYP+LYPELSQYMGLS
Sbjct: 1 MSLYPSLEDLK------AQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS 54
Query: 249 LNEEEIRTNMAVVPGAPVQG-LVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKD 425
LNEEEIR N+AVV GAP+QG LVARPSS+NYMVAPVTGND GIRRAEIKQGIREVILCKD
Sbjct: 55 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD 114
Query: 426 QDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQ 605
QDGKIGLRLKS+DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD+AHKVLKQ
Sbjct: 115 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ 174
Query: 606 AFGEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICE 785
AFGEKITMTIRDRPFERT+TMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH+ICE
Sbjct: 175 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE 234
Query: 786 VNGQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPEV 959
+NGQNVIGLKDSQIADILST+G V+TITIMPAFI EHIIKRMAPSIMKSLMDHTIPEV
Sbjct: 235 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 292
>ref|NP_001186713.1| syntenin-2 isoform a [Homo sapiens].
Length = 292
Score = 347 bits (890), Expect = 1e-95
Identities = 177/295 (60%), Positives = 228/295 (77%)
Frame = +3
Query: 72 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 251
SLYPSLEDLKVD+ IQAQ A+P PA+ +A+ +S LYP L EL YMGLSL
Sbjct: 3 SLYPSLEDLKVDQAIQAQVR--ASPKMPALPVQATA-ISPPPVLYPNL-AELENYMGLSL 58
Query: 252 NEEEIRTNMAVVPGAPVQGLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQD 431
+ +E++ ++ +P V+ P MVAPVTG G+RRAEIK G+RE+ LCKD+
Sbjct: 59 SSQEVQESLLQIPEGDSTA-VSGPGP-GQMVAPVTGYSLGVRRAEIKPGVREIHLCKDER 116
Query: 432 GKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQAF 611
GK GLRL+ VD G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGWSS +AH+V+K+A
Sbjct: 117 GKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKAS 176
Query: 612 GEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVN 791
G+KI + +RDRPF+RTVTMHKDS GHVGF+ K GKI S+VK SSAARNGLLT H +CEV+
Sbjct: 177 GDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVD 236
Query: 792 GQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPE 956
GQNVIGLKD +I +IL+TAGNV+T+TI+P+ I EH++K++ P ++ MDH+IP+
Sbjct: 237 GQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPD 291
>ref|NP_536737.3| syntenin-2 isoform a [Homo sapiens].
Length = 292
Score = 347 bits (890), Expect = 1e-95
Identities = 177/295 (60%), Positives = 228/295 (77%)
Frame = +3
Query: 72 SLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASVPVSQDGNLYPKLYPELSQYMGLSL 251
SLYPSLEDLKVD+ IQAQ A+P PA+ +A+ +S LYP L EL YMGLSL
Sbjct: 3 SLYPSLEDLKVDQAIQAQVR--ASPKMPALPVQATA-ISPPPVLYPNL-AELENYMGLSL 58
Query: 252 NEEEIRTNMAVVPGAPVQGLVARPSSMNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQD 431
+ +E++ ++ +P V+ P MVAPVTG G+RRAEIK G+RE+ LCKD+
Sbjct: 59 SSQEVQESLLQIPEGDSTA-VSGPGP-GQMVAPVTGYSLGVRRAEIKPGVREIHLCKDER 116
Query: 432 GKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDRAHKVLKQAF 611
GK GLRL+ VD G+FVQLVQAN+PASLVGLRFGDQ+LQI+G +CAGWSS +AH+V+K+A
Sbjct: 117 GKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKAS 176
Query: 612 GEKITMTIRDRPFERTVTMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVN 791
G+KI + +RDRPF+RTVTMHKDS GHVGF+ K GKI S+VK SSAARNGLLT H +CEV+
Sbjct: 177 GDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVD 236
Query: 792 GQNVIGLKDSQIADILSTAGNVITITIMPAFILEHIIKRMAPSIMKSLMDHTIPE 956
GQNVIGLKD +I +IL+TAGNV+T+TI+P+ I EH++K++ P ++ MDH+IP+
Sbjct: 237 GQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPD 291
>ref|NP_056500.2| syntenin-2 isoform b [Homo sapiens].
Length = 207
Score = 299 bits (766), Expect = 2e-81
Identities = 139/206 (67%), Positives = 176/206 (85%)
Frame = +3
Query: 339 MVAPVTGNDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVG 518
MVAPVTG G+RRAEIK G+RE+ LCKD+ GK GLRL+ VD G+FVQLVQAN+PASLVG
Sbjct: 1 MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVG 60
Query: 519 LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSTGHVGF 698
LRFGDQ+LQI+G +CAGWSS +AH+V+K+A G+KI + +RDRPF+RTVTMHKDS GHVGF
Sbjct: 61 LRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGF 120
Query: 699 IFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMP 878
+ K GKI S+VK SSAARNGLLT H +CEV+GQNVIGLKD +I +IL+TAGNV+T+TI+P
Sbjct: 121 VIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIP 180
Query: 879 AFILEHIIKRMAPSIMKSLMDHTIPE 956
+ I EH++K++ P ++ MDH+IP+
Sbjct: 181 SVIYEHMVKKLPPVLLHHTMDHSIPD 206
>ref|NP_001154.2| amyloid beta A4 precursor protein-binding family A member 1 [Homo
sapiens].
Length = 837
Score = 62.8 bits (151), Expect = 5e-10
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Frame = +3
Query: 417 CKD-----QDGKIGLRLKSVDNG-------IFVQLVQANSPASLVG-LRFGDQVLQINGE 557
CKD Q G+I L + V++G + + + PA G L GDQ++ ING
Sbjct: 654 CKDVFIEKQKGEI-LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 712
Query: 558 NCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK-DSTGHVGFIFKNGKITSIV 731
+ G ++K + ++ + I P TV + + D +GF +NG I S++
Sbjct: 713 SLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLM 772
Query: 732 KDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAGNVITITIMPA 881
+ A R G+ H I E+NGQ+V+ +I ILS A I + MPA
Sbjct: 773 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 822
>ref|NP_001123886.1| amyloid beta A4 precursor protein-binding family A member 2 isoform b
[Homo sapiens].
Length = 737
Score = 58.2 bits (139), Expect = 1e-08
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Frame = +3
Query: 501 PASLVG-LRFGDQVLQINGENCAGWSSDRAHKVLKQAFGE-KITMTIRDRPFERTVTMHK 674
PA+ G L GDQ++ ING + G ++K + ++ + I P TV + +
Sbjct: 593 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 652
Query: 675 -DSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHSICEVNGQNVIGLKDSQIADILSTAG 851
D +GF +NG I S+++ A R G+ H I E+NGQ+V+ +I LS +
Sbjct: 653 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 712
Query: 852 NVITITIMPAFILEHIIKRMAP 917
I + MPA + + + P
Sbjct: 713 GEIHMKTMPAAMFRLLTGQETP 734
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,300,066
Number of extensions: 1137927
Number of successful extensions: 3669
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3638
Number of HSP's successfully gapped: 12
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012300
(999 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 351 5e-94
>Sscrofa_Chr04
|| Length = 143465943
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 468 ggcatatttgttcagcttgttcaggcaaattctccagcctcattagttgggctgcgattc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81094778 ggcatatttgttcagcttgttcaggcaaattctccagcctcattagttgggctgcgattc 81094719
Query: 528 ggggaccaggtgctccagatcaacggggagaactgtgcaggctggagctcggaccgggcc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81094718 ggggaccaggtgctccagatcaacggggagaactgtgcaggctggagctcggaccgggcc 81094659
Query: 588 cacaaggtgctcaagcaagcctttggagagaaaattaccatgaccattcgggaccgg 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81094658 cacaaggtgctcaagcaagcctttggagagaaaattaccatgaccattcgggaccgg 81094602
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 643 ggccctttgaacggacagttaccatgcataaggacagtactggacatgttggctttatct 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81093253 ggccctttgaacggacagttaccatgcataaggacagtactggacatgttggctttatct 81093194
Query: 703 tcaaaaacgggaagatcacctccatagtgaaggacagttctgcagccagaaacggccttc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81093193 tcaaaaacgggaagatcacctccatagtgaaggacagttctgcagccagaaacggccttc 81093134
Query: 763 tcacagaacacagcatctgcgaggtcaatggacagaatgtcattggactaaagg 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81093133 tcacagaacacagcatctgcgaggtcaatggacagaatgtcattggactaaagg 81093080
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 308 gttggttgcaagaccttccagcatgaactatatggtggctcctgtaactggtaatgacgc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81096690 gttggttgcaagaccttccagcatgaactatatggtggctcctgtaactggtaatgacgc 81096631
Query: 368 tggaatccgtagagcagaaattaagcaagggattcgtgaagtcattttatgtaaggatca 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81096630 tggaatccgtagagcagaaattaagcaagggattcgtgaagtcattttatgtaaggatca 81096571
Query: 428 agatggaaaaattgggctcaggcttaaatcagtagataatg 468
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 81096570 agatggaaaaattgggctcaggcttaaatcagtagataatg 81096530
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 199 atctctatcctaaactatatccggagctctctcagtacatgggcctgagtttaaatgaag 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099488 atctctatcctaaactatatccggagctctctcagtacatgggcctgagtttaaatgaag 81099429
Query: 259 aagaaattcgtacaaatatggccgtggtccctggagcaccagttcagggg 308
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099428 aagaaattcgtacaaatatggccgtggtccctggagcaccagttcagggg 81099379
Score = 172 bits (87), Expect = 2e-40
Identities = 93/95 (97%)
Strand = Plus / Minus
Query: 814 aggactctcagattgcagacatactgtccacagctgggaatgtcatcactatcacaatca 873
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 81092314 aggactctcagattgcagacatactgtcaacagctgggaatgtcatcactatcacaatca 81092255
Query: 874 tgcctgcttttatcctcgaacatattattaaacgg 908
|||||||||||||| ||||||||||||||||||||
Sbjct: 81092254 tgcctgcttttatcttcgaacatattattaaacgg 81092220
Score = 139 bits (70), Expect = 3e-30
Identities = 87/93 (93%)
Strand = Plus / Minus
Query: 907 ggatggcacccagcatcatgaaaagcctgatggatcacaccatccctgaggtctaaaagt 966
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 81091292 ggatggcacccagcatcatgaaaagcctgatggatcacaccatccctgaggtctaagagt 81091233
Query: 967 cccagcaccaccatggaaacggtgccnagcttc 999
| ||||| ||| ||||||||||||| ||||||
Sbjct: 81091232 cgcagcagcacagtggaaacggtgccaagcttc 81091200
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 53 gaaaaatcctgcaaaaatgtctctctacccatctcttgaagacctgaaggtagacaaggt 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81107009 gaaaaatcctgcaaaaatgtctctctacccatctcttgaagacctgaaggtagacaaggt 81106950
Query: 113 gatccagg 120
||||||||
Sbjct: 81106949 gatccagg 81106942
Score = 131 bits (66), Expect = 8e-28
Identities = 79/82 (96%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 117 caggctcaaactgctttttctgcaaaccctgccaacccagcaattttgtctgaagcttct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81101898 caggctcaaactgctttttctgcaaaccctgccaacccagcaattttgtctgaagcttct 81101839
Query: 177 gttcctgtctctcaagatggaa 198
|||| |||||||||||||||
Sbjct: 81101838 -ttcccttctctcaagatggaa 81101818
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 1 agtccgagtcagtgaccggaggcggcggcggcgatcaggtacctacggccggg 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81122720 agtccgagtcagtgaccggaggcggcggcggcgatcaggtacctacggccggg 81122668
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,614,792
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 9
Length of query: 999
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 978
Effective length of database: 2,808,413,156
Effective search space: 2746628066568
Effective search space used: 2746628066568
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)