Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012303
(1504 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039393.1| RNA-binding protein 4B [Bos taurus]. 635 0.0
Alignment gi|NP_001070478.1| RNA-binding protein 4 [Bos taurus]. 594 e-170
Alignment gi|NP_001014901.1| RNA-binding protein 14 [Bos taurus]. 142 1e-33
Alignment gi|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]. 72 2e-12
Alignment gi|NP_001094682.1| CUGBP Elav-like family member 1 [Bos taurus]. 72 2e-12
Alignment gi|XP_002685720.1| PREDICTED: splicing factor, arginine/serine-... 70 5e-12
Alignment gi|XP_001252872.1| PREDICTED: splicing factor, arginine/serine-... 70 5e-12
Alignment gi|NP_001075075.1| ELAV-like protein 4 [Bos taurus]. 69 8e-12
Alignment gi|XP_002707879.1| PREDICTED: ELAV-like 2-like [Bos taurus]. 69 1e-11
Alignment gi|NP_001076867.1| splicing factor, arginine/serine-rich 9 [Bos... 68 2e-11
>ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus].
Length = 359
Score = 635 bits (1638), Expect = 0.0
Identities = 315/359 (87%), Positives = 318/359 (88%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDR+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRS 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALDYYKRXXXXXXXXXXXXXXXXX 836
GRVADFTEQYNEQYGAVR PYTMGYGES+YYNDAYGALDYYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMGYGESVYYNDAYGALDYYKRYRVRSYEAVAAAAAASA 240
Query: 837 XXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSGXXXXXXXXXXXXXXXXXYYG 1016
QTMSHLPQVQ+TAVTSHLNSTSVDPYDRHLLPNSG YYG
Sbjct: 241 YNYAEQTMSHLPQVQNTAVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAATTSSYYG 300
Query: 1017 RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF 1193
RDRSPLRR AAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF
Sbjct: 301 RDRSPLRRGAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF 359
>ref|NP_001070478.1| RNA-binding protein 4 [Bos taurus].
Length = 362
Score = 594 bits (1531), Expect = e-170
Identities = 297/362 (82%), Positives = 308/362 (85%), Gaps = 3/362 (0%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDR+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRS 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALD-YYKRXXXXXXXXXXXXXXXX 833
GRVADFTEQYNEQYGAVR PYTMGYG+S+YYN+AYGALD YYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMGYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS 240
Query: 834 XXXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSG--XXXXXXXXXXXXXXXXX 1007
QT+S LPQVQ+TA+ SHL STS+DPYDRHLLP SG
Sbjct: 241 AYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAAAAAAAAAAAVTAASSS 300
Query: 1008 YYGRDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYS 1187
YYGRDRSPLRRA +PTVGEGYGYG ESELSQ S+AARNSLYDMARYEREQY DRARYS
Sbjct: 301 YYGRDRSPLRRATGPVPTVGEGYGYGHESELSQGSSAARNSLYDMARYEREQYADRARYS 360
Query: 1188 AF 1193
AF
Sbjct: 361 AF 362
>ref|NP_001014901.1| RNA-binding protein 14 [Bos taurus].
Length = 669
Score = 142 bits (357), Expect = 1e-33
Identities = 73/162 (45%), Positives = 106/162 (65%), Gaps = 2/162 (1%)
Frame = +3
Query: 120 VKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
+K+F+GN+ + T +E+ +LF YG V+ C ++K + FVH+ + A AI LH ++L
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 297 H-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 473
G + VE S+ + + K+ VGN+S CT+QELR+ FE G VIECD+VKDYAFVHME
Sbjct: 61 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME 120
Query: 474 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 599
+ DA AI L+ E +GKR++V+LST + PG+ QSG
Sbjct: 121 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAIQSG 162
>ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus].
Length = 636
Score = 71.6 bits (174), Expect = 2e-12
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 23/163 (14%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 287
+FI NL + + + F +G +L C ++ K YGFVH E + AAE AI ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 288 YKLHGVNINVEASKN----------KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIEC 437
L+ + V K+ ++K T +++ N ++ L+ F ++GP +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 438 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 545
++ D + FV ER EDA +A+ ++ E GK+++V
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 51.2 bits (121), Expect = 2e-06
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 18/175 (10%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 272
M L++G+L + TE + F G +L + ++ Y +V+ + AE A+
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 273 RNLHHYKLHGVNINVEASKN----KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECD 440
++ + G + + S+ + + + N+ + N+ L F +G ++ C
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 441 IV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 587
+V K Y FVH E E A AI ++ +++ V SR +G
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
>ref|NP_001094682.1| CUGBP Elav-like family member 1 [Bos taurus].
Length = 486
Score = 71.6 bits (174), Expect = 2e-12
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%)
Frame = +3
Query: 120 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 269
+K+F+G +PR +E+++R LFEQYG V E +++++ FV + AA +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 270 IRNLHHYKL-----HGVNIN-VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVI 431
LH+ K+ H + + ++ KN + KL +G IS CT ++R F +G +
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 432 ECDIVK 449
EC I++
Sbjct: 136 ECRILR 141
>ref|XP_002685720.1| PREDICTED: splicing factor, arginine/serine-rich 9-like [Bos
taurus].
Length = 221
Score = 70.1 bits (170), Expect = 5e-12
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Frame = +3
Query: 123 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG-----FVHIEDKTAAEDAIRNLHH 287
++++GNLP + E+++ LF +YG + E ++ +G FV ED AEDA+ +
Sbjct: 15 RIYVGNLPNDVREKDLEDLFYKYGHISEIELKNRHGLVPFAFVRFEDPRDAEDAVYGRNG 74
Query: 288 YKLHGVNINVEASKN----------------KSKASTKLHVGNISPTCTNQELRAKFEEY 419
Y + VE + ++ ++ V + P+ + Q+L+ E
Sbjct: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 134
Query: 420 GPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQS 596
G V D+ KD V R ED A+R LD T+F R H + TS +R P
Sbjct: 135 GDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKF---RSH-EGETSYIRVYPERSTSY 190
Query: 597 GCYRCGKEGHWSKECPVDRTGRVADFT 677
G Y + G ++ P G DF+
Sbjct: 191 G-YSRSRSGSRGRDSPYQSRGSPHDFS 216
>ref|XP_001252872.1| PREDICTED: splicing factor, arginine/serine-rich 9 [Bos taurus].
Length = 221
Score = 70.1 bits (170), Expect = 5e-12
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Frame = +3
Query: 123 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG-----FVHIEDKTAAEDAIRNLHH 287
++++GNLP + E+++ LF +YG + E ++ +G FV ED AEDA+ +
Sbjct: 15 RIYVGNLPNDVREKDLEDLFYKYGHISEIELKNRHGLVPFAFVRFEDPRDAEDAVYGRNG 74
Query: 288 YKLHGVNINVEASKN----------------KSKASTKLHVGNISPTCTNQELRAKFEEY 419
Y + VE + ++ ++ V + P+ + Q+L+ E
Sbjct: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 134
Query: 420 GPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQS 596
G V D+ KD V R ED A+R LD T+F R H + TS +R P
Sbjct: 135 GDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKF---RSH-EGETSYIRVYPERSTSY 190
Query: 597 GCYRCGKEGHWSKECPVDRTGRVADFT 677
G Y + G ++ P G DF+
Sbjct: 191 G-YSRSRSGSRGRDSPYQSRGSPHDFS 216
>ref|NP_001075075.1| ELAV-like protein 4 [Bos taurus].
Length = 366
Score = 69.3 bits (168), Expect = 8e-12
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 18/153 (11%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 281
L + LP+ T++E RSLF G++ C ++++ YGFV+ D AE AI L
Sbjct: 48 LIVNYLPQNMTQE
Animal-Genome cDNA 20110601C-012303
Animal-Genome cDNA 20110601C-012303
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012303
(1504 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533216.1| PREDICTED: similar to zinc responsive protein Z... 639 0.0
Alignment gi|XP_852248.1| PREDICTED: similar to zinc responsive protein Z... 639 0.0
Alignment gi|XP_865469.1| PREDICTED: similar to RNA-binding protein 4 (RN... 594 e-170
Alignment gi|XP_865451.1| PREDICTED: similar to RNA-binding protein 4 (RN... 594 e-170
Alignment gi|XP_852303.1| PREDICTED: similar to RNA-binding protein 4 (RN... 594 e-170
Alignment gi|XP_865386.1| PREDICTED: similar to zinc responsive protein Z... 389 e-108
Alignment gi|XP_865369.1| PREDICTED: similar to zinc responsive protein Z... 282 5e-76
Alignment gi|XP_865484.1| PREDICTED: similar to RNA binding motif protein... 278 8e-75
Alignment gi|XP_548643.2| PREDICTED: similar to Cullin-3 (CUL-3) [Canis f... 175 1e-57
Alignment gi|XP_533217.2| PREDICTED: similar to RNA binding motif protein... 93 8e-19
>ref|XP_533216.1| PREDICTED: similar to zinc responsive protein ZD7 isoform 1 [Canis
familiaris].
Length = 359
Score = 639 bits (1649), Expect = 0.0
Identities = 318/359 (88%), Positives = 319/359 (88%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALDYYKRXXXXXXXXXXXXXXXXX 836
GRVADFTEQYNEQYGAVR PYTMGYGESMYYNDAYGALDYYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAAAAAASA 240
Query: 837 XXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSGXXXXXXXXXXXXXXXXXYYG 1016
Q+MSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSG YYG
Sbjct: 241 YNYAEQSMSHLPQEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 282 HHYKLHGVNINVEASKNKSKA--STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD- 452
+ +L I V ++ S + L+V + T T +EL F +YG +I I+ D
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 167
Query: 453 -------YAFVHMERAEDAVEAIRGLDNTEFQG 530
F+ ++ +A EAI+GL+ + G
Sbjct: 168 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 200
Score = 50.1 bits (118), Expect = 5e-06
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Frame = +3
Query: 105 ALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAA 260
A +R L++ LP+ T++E+ LF QYG+++ I+ + GF+ + + A
Sbjct: 127 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 186
Query: 261 EDAIRNLHHYKLHGVN--INVEASKNKSKASTK 353
E+AI+ L+ K G I V+ + N S+ S++
Sbjct: 187 EEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
>ref|XP_002707879.1| PREDICTED: ELAV-like 2-like [Bos taurus].
Length = 620
Score = 68.6 bits (166), Expect = 1e-11
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 18/153 (11%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 281
L + LP+ T++E++SLF G++ C ++++ YGFV+ D AE AI L
Sbjct: 315 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 374
Query: 282 HHYKLHGVNINVEASKNKSKA--STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD- 452
+ +L I V ++ S + L+V + T T +EL F +YG +I I+ D
Sbjct: 375 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 434
Query: 453 -------YAFVHMERAEDAVEAIRGLDNTEFQG 530
F+ ++ +A EAI+GL+ + G
Sbjct: 435 VTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 467
>ref|NP_001076867.1| splicing factor, arginine/serine-rich 9 [Bos taurus].
Length = 221
Score = 68.2 bits (165), Expect = 2e-11
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 22/201 (10%)
Frame = +3
Query: 123 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG-----FVHIEDKTAAEDAIRNLHH 287
++++GNLP + E+++ LF +YG++ E ++ +G FV ED AEDAI +
Sbjct: 15 RIYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
Query: 288 YKLHGVNINVEASKN----------------KSKASTKLHVGNISPTCTNQELRAKFEEY 419
Y + VE + ++ ++ V + P+ + Q+L+ E
Sbjct: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 134
Query: 420 GPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQS 596
G V D+ KD V R ED A+R LD T+F R H + TS +R P
Sbjct: 135 GDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKF---RSH-EGETSYIRVYPERSTSY 190
Query: 597 GCYRCGKEGHWSKECPVDRTG 659
G Y + G ++ P G
Sbjct: 191 G-YSRSRSGSRGRDSPYQSRG 210
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,276,631
Number of extensions: 1505776
Number of successful extensions: 5368
Number of sequences better than 1.0e-05: 83
Number of HSP's gapped: 5239
Number of HSP's successfully gapped: 91
Length of query: 501
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 395
Effective length of database: 14,174,046
Effective search space: 5598748170
Effective search space used: 5598748170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
VQSTAVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAANTSSYYG 300
Query: 1017 RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF 1193
RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF
Sbjct: 301 RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF 359
>ref|XP_852248.1| PREDICTED: similar to zinc responsive protein ZD7 isoform 2 [Canis
familiaris].
Length = 359
Score = 639 bits (1649), Expect = 0.0
Identities = 318/359 (88%), Positives = 319/359 (88%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALDYYKRXXXXXXXXXXXXXXXXX 836
GRVADFTEQYNEQYGAVR PYTMGYGESMYYNDAYGALDYYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAAAAAASA 240
Query: 837 XXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSGXXXXXXXXXXXXXXXXXYYG 1016
Q+MSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSG YYG
Sbjct: 241 YNYAEQSMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAANTSSYYG 300
Query: 1017 RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF 1193
RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF
Sbjct: 301 RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF 359
>ref|XP_865469.1| PREDICTED: similar to RNA-binding protein 4 (RNA-binding motif
protein 4) (Lark homolog) (Hlark) (RNA-binding motif
protein 4a) isoform 3 [Canis familiaris].
Length = 365
Score = 594 bits (1532), Expect = e-170
Identities = 298/365 (81%), Positives = 309/365 (84%), Gaps = 6/365 (1%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP+DR+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALD-YYKRXXXXXXXXXXXXXXXX 833
GRVADFTEQYNEQYGAVR PYTM YG+S+YYN+AYGALD YYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS 240
Query: 834 XXXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSG-----XXXXXXXXXXXXXX 998
QT+S LPQVQ+TA+ SHL STS+DPYDRHLLP SG
Sbjct: 241 AYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAAATAAAAAAAAAAVTAA 300
Query: 999 XXXYYGRDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRA 1178
YYGRDRSPLRRA A +PTVGEGYGYG ESELSQASAAARNSLYDMARYEREQY DRA
Sbjct: 301 STSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 360
Query: 1179 RYSAF 1193
RYSAF
Sbjct: 361 RYSAF 365
>ref|XP_865451.1| PREDICTED: similar to RNA-binding protein 4 (RNA-binding motif
protein 4) (Lark homolog) (Hlark) (RNA-binding motif
protein 4a) isoform 2 [Canis familiaris].
Length = 365
Score = 594 bits (1532), Expect = e-170
Identities = 298/365 (81%), Positives = 309/365 (84%), Gaps = 6/365 (1%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP+DR+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALD-YYKRXXXXXXXXXXXXXXXX 833
GRVADFTEQYNEQYGAVR PYTM YG+S+YYN+AYGALD YYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS 240
Query: 834 XXXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSG-----XXXXXXXXXXXXXX 998
QT+S LPQVQ+TA+ SHL STS+DPYDRHLLP SG
Sbjct: 241 AYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAAATAAAAAAAAAAVTAA 300
Query: 999 XXXYYGRDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRA 1178
YYGRDRSPLRRA A +PTVGEGYGYG ESELSQASAAARNSLYDMARYEREQY DRA
Sbjct: 301 STSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 360
Query: 1179 RYSAF 1193
RYSAF
Sbjct: 361 RYSAF 365
>ref|XP_852303.1| PREDICTED: similar to RNA-binding protein 4 (RNA-binding motif
protein 4) (Lark homolog) (Hlark) (RNA-binding motif
protein 4a) isoform 1 [Canis familiaris].
Length = 365
Score = 594 bits (1532), Expect = e-170
Identities = 298/365 (81%), Positives = 309/365 (84%), Gaps = 6/365 (1%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP+DR+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALD-YYKRXXXXXXXXXXXXXXXX 833
GRVADFTEQYNEQYGAVR PYTM YG+S+YYN+AYGALD YYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS 240
Query: 834 XXXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSG-----XXXXXXXXXXXXXX 998
QT+S LPQVQ+TA+ SHL STS+DPYDRHLLP SG
Sbjct: 241 AYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAAATAAAAAAAAAAVTAA 300
Query: 999 XXXYYGRDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRA 1178
YYGRDRSPLRRA A +PTVGEGYGYG ESELSQASAAARNSLYDMARYEREQY DRA
Sbjct: 301 STSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 360
Query: 1179 RYSAF 1193
RYSAF
Sbjct: 361 RYSAF 365
>ref|XP_865386.1| PREDICTED: similar to zinc responsive protein ZD7 isoform 4 [Canis
familiaris].
Length = 203
Score = 389 bits (999), Expect = e-108
Identities = 188/188 (100%), Positives = 188/188 (100%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 180
Query: 657 GRVADFTE 680
GRVADFTE
Sbjct: 181 GRVADFTE 188
>ref|XP_865369.1| PREDICTED: similar to zinc responsive protein ZD7 isoform 3 [Canis
familiaris].
Length = 143
Score = 282 bits (722), Expect = 5e-76
Identities = 138/139 (99%), Positives = 139/139 (100%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGK 533
AEDAVEAIRGLDNTEFQG+
Sbjct: 121 AEDAVEAIRGLDNTEFQGR 139
Score = 69.7 bits (169), Expect = 7e-12
Identities = 31/75 (41%), Positives = 50/75 (66%)
Frame = +3
Query: 351 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 530
KL +GN+ T QE+R+ FE+YG V+ECDI+K+Y FVH+E A +AIR L + + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 531 KRMHVQLSTSRLRTA 575
++V+ S ++ + +
Sbjct: 63 VNINVEASKNKSKAS 77
>ref|XP_865484.1| PREDICTED: similar to RNA binding motif protein 4 isoform 4 [Canis
familiaris].
Length = 143
Score = 278 bits (712), Expect = 8e-75
Identities = 136/138 (98%), Positives = 137/138 (99%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQG 530
AEDAVEAIRGLDNTEFQG
Sbjct: 121 AEDAVEAIRGLDNTEFQG 138
Score = 71.6 bits (174), Expect = 2e-12
Identities = 32/75 (42%), Positives = 51/75 (68%)
Frame = +3
Query: 351 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 530
KL +GN+ T QE+R+ FE+YG V+ECDI+K+Y FVH+E A +AIR L + + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 531 KRMHVQLSTSRLRTA 575
++V+ S ++ +T+
Sbjct: 63 VNINVEASKNKSKTS 77
>ref|XP_548643.2| PREDICTED: similar to Cullin-3 (CUL-3) [Canis familiaris].
Length = 421
Score = 175 bits (444), Expect(2) = 1e-57
Identities = 83/93 (89%), Positives = 85/93 (91%)
Frame = +3
Query: 489 VEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVA 668
VEAIRGLDNTEFQ KRMHVQLSTSRLRTAPGMGDQSGCYR GKEGHWSKECPVDRTGRVA
Sbjct: 42 VEAIRGLDNTEFQDKRMHVQLSTSRLRTAPGMGDQSGCYRRGKEGHWSKECPVDRTGRVA 101
Query: 669 DFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGA 767
DFTEQ+N QYGAVR PYT+G GE YNDAYGA
Sbjct: 102 DFTEQHNGQYGAVRTPYTLGCGEPTCYNDAYGA 134
Score = 67.8 bits (164), Expect(2) = 1e-57
Identities = 46/127 (36%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Frame = +1
Query: 769 STTISVTESALMXXXXXXXXXXXXXXXXXPCPICLKSRAQL*PVTSTPLPLIPTTDTCCL 948
ST S T SALM PCPICL +RAQL PVT TPL LIPTTDTCC
Sbjct: 135 STLRSATGSALMRQWRRQQQPLRTTAWSSPCPICLTTRAQLGPVTPTPLLLIPTTDTCCR 194
Query: 949 TQAXXXXXXXXXXXXXXXXXIMEGTGAPYVALQLCSPQ-LEKDTVMGQKASCLRLQQRHG 1125
Q + +G P + C+P ++ + Q ++ R
Sbjct: 195 AQGLLPLRLCGCCRCQHLVLLWKGQEPP-SSCHSCAPHGYGPESELPQASAAAR------ 247
Query: 1126 ILCMTWP 1146
ILCM WP
Sbjct: 248 ILCMAWP 254
>ref|XP_533217.2| PREDICTED: similar to RNA binding motif protein 14 [Canis
familiaris].
Length = 196
Score = 92.8 bits (229), Expect = 8e-19
Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Frame = +3
Query: 120 VKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
+K+F+GN+ + T +E+ +LF YG V+ C ++K + FVH+ + A AI LH ++L
Sbjct: 65 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 124
Query: 297 H-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK 449
G + VE S+ + + K+ VGN+S CT+QELR+ FE G VIECD+VK
Sbjct: 125 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 176
Score = 50.1 bits (118), Expect = 6e-06
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +3
Query: 123 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 242
K+F+GN+ T QE+RSLFE+ G+V+ECD++K G + I
Sbjct: 144 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKGTGEIFI 183
Score = 49.7 bits (117), Expect = 7e-06
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +3
Query: 351 KLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 527
K+ VGN+ T +EL A F YG V+ C ++K +AFVHM A+ AI L E +
Sbjct: 66 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 125
Query: 528 -GKRMHVQLSTSR 563
G+ + V++S R
Sbjct: 126 PGRALVVEMSRPR 138
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,531,949
Number of extensions: 1546137
Number of successful extensions: 6309
Number of sequences better than 1.0e-05: 260
Number of HSP's gapped: 5896
Number of HSP's successfully gapped: 336
Length of query: 501
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 394
Effective length of database: 15,307,552
Effective search space: 6031175488
Effective search space used: 6031175488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012303
(1504 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116660.1| RNA-binding protein 4B [Sus scrofa]. 644 0.0
Alignment gi|NP_001116659.1| RNA-binding protein 4 [Sus scrofa]. 586 e-167
Alignment gi|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [... 72 1e-12
Alignment gi|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Su... 69 9e-12
Alignment gi|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Su... 69 9e-12
Alignment gi|NP_001182495.1| splicing factor, arginine/serine-rich 9 [Sus... 67 2e-11
Alignment gi|XP_003125259.1| PREDICTED: serine/arginine-rich splicing fac... 66 6e-11
Alignment gi|XP_003125258.1| PREDICTED: serine/arginine-rich splicing fac... 66 6e-11
Alignment gi|NP_001070684.1| serine/arginine-rich splicing factor 4 [Sus ... 65 8e-11
Alignment gi|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [... 65 1e-10
>ref|NP_001116660.1| RNA-binding protein 4B [Sus scrofa].
Length = 359
Score = 644 bits (1661), Expect = 0.0
Identities = 320/359 (89%), Positives = 320/359 (89%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALDYYKRXXXXXXXXXXXXXXXXX 836
GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALDYYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAAAAAASA 240
Query: 837 XXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSGXXXXXXXXXXXXXXXXXYYG 1016
QTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSG YYG
Sbjct: 241 YNYAEQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAATTSSYYG 300
Query: 1017 RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF 1193
RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF
Sbjct: 301 RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF 359
>ref|NP_001116659.1| RNA-binding protein 4 [Sus scrofa].
Length = 365
Score = 586 bits (1511), Expect = e-167
Identities = 293/365 (80%), Positives = 306/365 (83%), Gaps = 6/365 (1%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGF HIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFAHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP+DR+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALD-YYKRXXXXXXXXXXXXXXXX 833
GRVADFTEQYNEQYGAVR PYTM YG+S+YYN+AYGALD YYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS 240
Query: 834 XXXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSG-----XXXXXXXXXXXXXX 998
QT+S LPQ ++TA+ SHL STS+DPYDRHLLP SG
Sbjct: 241 AYNYAEQTLSQLPQGENTAMASHLTSTSLDPYDRHLLPTSGAAAATAAAAAAAAAAVTAA 300
Query: 999 XXXYYGRDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRA 1178
YYGRDRSPLRRA A +PTVGEGYGYG +SELSQASAAARNSLYDMARYEREQY DRA
Sbjct: 301 STSYYGRDRSPLRRATAPVPTVGEGYGYGHDSELSQASAAARNSLYDMARYEREQYADRA 360
Query: 1179 RYSAF 1193
RYS F
Sbjct: 361 RYSTF 365
>ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa].
Length = 636
Score = 71.6 bits (174), Expect = 1e-12
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 23/163 (14%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 287
+FI NL + + + F +G +L C ++ K YGFVH E + AAE AI ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 288 YKLHGVNINVEASKN----------KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIEC 437
L+ + V K+ ++K T +++ N ++ L+ F ++GP +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 438 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 545
++ D + FV ER EDA +A+ ++ E GK+++V
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 51.2 bits (121), Expect = 1e-06
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 18/175 (10%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 272
M L++G+L + TE + F G +L + ++ Y +V+ + AE A+
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 273 RNLHHYKLHGVNINVEASKN----KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECD 440
++ + G + + S+ + + + N+ + N+ L F +G ++ C
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 441 IV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 587
+V K Y FVH E E A AI ++ +++ V SR +G
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
>ref|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Sus scrofa].
Length = 346
Score = 68.6 bits (166), Expect = 9e-12
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 18/153 (11%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 281
L + LP+ T++E++SLF G++ C ++++ YGFV+ D AE AI L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 282 HHYKLHGVNINVEASKNKSKA--STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD- 452
+ +L I V ++ S + L+V + T T +EL F +YG +I I+ D
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 160
Query: 453 -------YAFVHMERAEDAVEAIRGLDNTEFQG 530
F+ ++ +A EAI+GL+ + G
Sbjct: 161 VTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
>ref|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Sus scrofa].
Length = 359
Score = 68.6 bits (166), Expect = 9e-12
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 18/153 (11%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 281
L + LP+ T++E++SLF G++ C ++++ YGFV+ D AE AI L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 282 HHYKLHGVNINVEASKNKSKA--STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD- 452
+ +L I V ++ S + L+V + T T +EL F +YG +I I+ D
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 160
Query: 453 -------YAFVHMERAEDAVEAIRGLDNTEFQG 530
F+ ++ +A EAI+GL+ + G
Sbjct: 161 VTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPG 193
>ref|NP_001182495.1| splicing factor, arginine/serine-rich 9 [Sus scrofa].
Length = 221
Score = 67.4 bits (163), Expect = 2e-11
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 22/196 (11%)
Frame = +3
Query: 123 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG-----FVHIEDKTAAEDAIRNLHH 287
++++GNLP + E+++ LF +YG++ E ++ +G FV ED AEDAI +
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
Query: 288 YKLHGVNINVEASKN----------------KSKASTKLHVGNISPTCTNQELRAKFEEY 419
Y + VE + ++ ++ V + P+ + Q+L+ E
Sbjct: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 134
Query: 420 GPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQS 596
G V D+ KD V R ED A+R LD+T+F R H + TS +R P
Sbjct: 135 GDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF---RSH-EGETSYIRVYPERSTSY 190
Query: 597 GCYRCGKEGHWSKECP 644
G Y + G ++ P
Sbjct: 191 G-YSRSRSGSRGRDSP 205
>ref|XP_003125259.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 2
[Sus scrofa].
Length = 226
Score = 65.9 bits (159), Expect = 6e-11
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Frame = +3
Query: 348 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNT 518
TK++VGN+ EL F YGP+ I ++ +AFV E DA +A+RGLD
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 519 EFQGKRMHVQLST-----SRLRTAPG---MGDQSGCYRCGKEGHWSKEC 641
G R+ V+LST SR P CY CG++GH++ +C
Sbjct: 71 VICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>ref|XP_003125258.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Sus scrofa].
Length = 238
Score = 65.9 bits (159), Expect = 6e-11
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Frame = +3
Query: 348 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNT 518
TK++VGN+ EL F YGP+ I ++ +AFV E DA +A+RGLD
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 519 EFQGKRMHVQLST-----SRLRTAPG---MGDQSGCYRCGKEGHWSKEC 641
G R+ V+LST SR P CY CG++GH++ +C
Sbjct: 71 VICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>ref|NP_001070684.1| serine/arginine-rich splicing factor 4 [Sus scrofa].
Length = 491
Score = 65.5 bits (158), Expect = 8e-11
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
M +++IG L +A E+++ F+ YGK+LE D+ YGFV +D A+DA+ L+ L
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60
Query: 297 HGVNINVEASKN--------------------------KSKASTKLHVGNISPTCTNQEL 398
G + VE ++ ++ +L V N+S C+ Q+L
Sbjct: 61 CGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDL 120
Query: 399 RAKFEEYGPVIECDI---VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 545
+ + G V D K+ + D A+ LD TE G+++ +
Sbjct: 121 KDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [Sus scrofa].
Length = 644
Score = 65.1 bits (157), Expect = 1e-10
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 287
+FI NL + + + F +G +L C ++ K Y FVH E + AA+ AI ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 288 YKLHGVNINVEASKN----------KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIEC 437
L+ + V K+ K+K T +++ N ++ L+ F ++G +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 438 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 545
+++D + FV E+ EDA +A+ ++ E GK + V
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Score = 53.5 bits (127), Expect = 3e-07
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 272
M L++G+L + TE + F G VL + ++ Y +V+ + AE A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 273 RNLHHYKLHGVNINVEASKN----KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECD 440
++ + G I + S+ + + + N+ + N+ L F +G ++ C
Sbjct: 70 DTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 441 IV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 587
+V K YAFVH E E A +AI ++ +++ V SR +G
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,248,774
Number of extensions: 966624
Number of successful extensions: 3525
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 3436
Number of HSP's successfully gapped: 61
Length of query: 501
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 398
Effective length of database: 8,779,541
Effective search space: 3494257318
Effective search space used: 3494257318
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012303
(1504 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079993.2| RNA-binding protein 4B [Mus musculus]. 622 e-178
Alignment gi|NP_033058.2| RNA-binding protein 4 [Mus musculus]. 586 e-167
Alignment gi|NP_063922.2| RNA-binding protein 14 [Mus musculus]. 139 4e-33
Alignment gi|NP_059064.2| CUGBP Elav-like family member 1 isoform 1 [Mus ... 72 1e-12
Alignment gi|NP_941955.1| CUGBP Elav-like family member 1 isoform 2 [Mus ... 72 1e-12
Alignment gi|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]. 72 1e-12
Alignment gi|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus ... 72 1e-12
Alignment gi|NP_001156871.1| ELAV-like protein 4 isoform d [Mus musculus]. 69 7e-12
Alignment gi|NP_001156869.1| ELAV-like protein 4 isoform c [Mus musculus]. 69 7e-12
Alignment gi|NP_034618.2| ELAV-like protein 4 isoform a [Mus musculus]. 69 7e-12
>ref|NP_079993.2| RNA-binding protein 4B [Mus musculus].
Length = 357
Score = 622 bits (1603), Expect = e-178
Identities = 311/359 (86%), Positives = 313/359 (87%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALDYYKRXXXXXXXXXXXXXXXXX 836
GRVADFTEQYNEQYGAVR PYTMGYGESMYYNDAYGALDYYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAAAAAASA 240
Query: 837 XXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSGXXXXXXXXXXXXXXXXXYYG 1016
QTMSHLPQVQS+AV SHLNSTSVDPYDRHLL NSG YYG
Sbjct: 241 YNYAEQTMSHLPQVQSSAVPSHLNSTSVDPYDRHLLQNSG--SAATSAAMAAAASSSYYG 298
Query: 1017 RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF 1193
RDRSPLRR AAVLP VGEGYGYGPESE+SQASAA RNSLYDMARYEREQYVDR RYSAF
Sbjct: 299 RDRSPLRRNAAVLPAVGEGYGYGPESEMSQASAATRNSLYDMARYEREQYVDRTRYSAF 357
>ref|NP_033058.2| RNA-binding protein 4 [Mus musculus].
Length = 361
Score = 586 bits (1510), Expect = e-167
Identities = 294/361 (81%), Positives = 306/361 (84%), Gaps = 2/361 (0%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP+DR+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALD-YYKR-XXXXXXXXXXXXXXX 830
GRVAD TEQYNEQYGAVR PYTM YG+S+YYN+ YGALD YYKR
Sbjct: 181 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNTYGALDAYYKRCRAARSYEAVAAAAAS 240
Query: 831 XXXXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSGXXXXXXXXXXXXXXXXXY 1010
QT+S LPQVQ+TA+ SHL STS+DPY+RHLLP SG Y
Sbjct: 241 AYSNYAEQTLSQLPQVQNTAMASHLTSTSLDPYNRHLLPPSGAAAAAAAAAACTAASTSY 300
Query: 1011 YGRDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSA 1190
YGRDRSPLRRA + TVGEGYGYG +SELSQASAAARNSLYDMARYEREQY DRARYSA
Sbjct: 301 YGRDRSPLRRATGPVLTVGEGYGYGHDSELSQASAAARNSLYDMARYEREQYADRARYSA 360
Query: 1191 F 1193
F
Sbjct: 361 F 361
>ref|NP_063922.2| RNA-binding protein 14 [Mus musculus].
Length = 669
Score = 139 bits (351), Expect = 4e-33
Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 2/162 (1%)
Frame = +3
Query: 120 VKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
+K+F+GN+ + T +E+ +LF YG V+ C ++K + FVH+ + A AI LH ++L
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 297 H-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 473
G + VE S+ + + K+ VGN+S CT+QELR+ FE G VIECD+VKDYAFVHME
Sbjct: 61 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME 120
Query: 474 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 599
+ DA AI L+ E +GKR++V+LST + P + QSG
Sbjct: 121 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPALAIQSG 162
>ref|NP_059064.2| CUGBP Elav-like family member 1 isoform 1 [Mus musculus].
Length = 513
Score = 72.0 bits (175), Expect = 1e-12
Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 16/126 (12%)
Frame = +3
Query: 120 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 269
+K+F+G +PR +E+++R LFEQYG V E +I+++ FV + AA +A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 270 IRNLHHYKL-----HGVNIN-VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVI 431
LH+ K+ H + + ++ KN + KL +G IS CT ++R F +G +
Sbjct: 103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162
Query: 432 ECDIVK 449
EC I++
Sbjct: 163 ECRILR 168
>ref|NP_941955.1| CUGBP Elav-like family member 1 isoform 2 [Mus musculus].
Length = 486
Score = 72.0 bits (175), Expect = 1e-12
Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 16/126 (12%)
Frame = +3
Query: 120 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 269
+K+F+G +PR +E+++R LFEQYG V E +I+++ FV + AA +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 270 IRNLHHYKL-----HGVNIN-VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVI 431
LH+ K+ H + + ++ KN + KL +G IS CT ++R F +G +
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 432 ECDIVK 449
EC I++
Sbjct: 136 ECRILR 141
>ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus].
Length = 636
Score = 72.0 bits (175), Expect = 1e-12
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 23/163 (14%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 287
+FI NL + + + F +G +L C ++ K YGFVH E + AAE AI ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 288 YKLHGVNINVEASKN----------KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIEC 437
L+ + V K+ ++K T +++ N ++ L+ F ++GP +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 438 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 545
++ D + FV ER EDA +A+ ++ E GK+++V
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 51.2 bits (121), Expect = 2e-06
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 18/175 (10%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAI 272
M L++G+L + TE + F G +L + ++ Y +V+ + AE A+
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 273 RNLHHYKLHGVNINVEASKN----KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECD 440
++ + G + + S+ + + + N+ + N+ L F +G ++ C
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 441 IV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 587
+V K Y FVH E E A AI ++ +++ V SR +G
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
>ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus].
Length = 643
Score = 71.6 bits (174), Expect = 1e-12
Identities = 47/202 (23%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHH 287
+F+ NL R + + F +G +L C ++ K YGFVH E + AE AI ++
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNG 160
Query: 288 YKLHGVNINVEASKNK----------SKASTKLHVGNISPTCTNQELRAKFEEYGPVIEC 437
L+ + V K++ +K T +++ N+ ++ L+ F +GP +
Sbjct: 161 MFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSV 220
Query: 438 DIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQS 596
++ D + FV ER EDA +A+ ++ + GK+++V + ++ + +
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKF 280
Query: 597 GCYRCGKEGHWSKECPVDRTGR 662
G + ++ H + P DR+ R
Sbjct: 281 G--QMKQDKHKIERVPQDRSVR 300
>ref|NP_001156871.1| ELAV-like protein 4 isoform d [Mus musculus].
Length = 371
Score = 69.3 bits (168), Expect = 7e-12
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 18/153 (11%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 281
L + LP+ T++E RSLF G++ C ++++ YGFV+ D AE AI L
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 282 HHYKLHGVNINVEASKNKSKA--STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD- 452
+ +L I V ++ S + L+V + T T +EL F +YG +I I+ D
Sbjct: 113 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 172
Query: 453 -------YAFVHMERAEDAVEAIRGLDNTEFQG 530
F+ ++ +A EAI+GL+ + G
Sbjct: 173 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 205
Score = 50.1 bits (118), Expect = 5e-06
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Frame = +3
Query: 105 ALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAA 260
A +R L++ LP+ T++E+ LF QYG+++ I+ + GF+ + + A
Sbjct: 132 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 191
Query: 261 EDAIRNLHHYKLHGVN--INVEASKNKSKASTK 353
E+AI+ L+ K G I V+ + N S+ S++
Sbjct: 192 EEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
>ref|NP_001156869.1| ELAV-like protein 4 isoform c [Mus musculus].
Length = 356
Score = 69.3 bits (168), Expect = 7e-12
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 18/153 (11%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 281
L + LP+ T++E RSLF G++ C ++++ YGFV+ D AE AI L
Sbjct: 51 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 110
Query: 282 HHYKLHGVNINVEASKNKSKA--STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD- 452
+ +L I V ++ S + L+V + T T +EL F +YG +I I+ D
Sbjct: 111 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 170
Query: 453 -------YAFVHMERAEDAVEAIRGLDNTEFQG 530
F+ ++ +A EAI+GL+ + G
Sbjct: 171 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 203
Score = 50.1 bits (118), Expect = 5e-06
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Frame = +3
Query: 105 ALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAA 260
A +R L++ LP+ T++E+ LF QYG+++ I+ + GF+ + + A
Sbjct: 130 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 189
Query: 261 EDAIRNLHHYKLHGVN--INVEASKNKSKASTK 353
E+AI+ L+ K G I V+ + N S+ S++
Sbjct: 190 EEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 222
>ref|NP_034618.2| ELAV-like protein 4 isoform a [Mus musculus].
Length = 385
Score = 69.3 bits (168), Expect = 7e-12
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 18/153 (11%)
Frame = +3
Query: 126 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 281
L + LP+ T++E RSLF G++ C ++++ YGFV+ D AE AI L
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 282 HHYKLHGVNINVEASKNKSKA--STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD- 452
+ +L I V ++ S + L+V + T T +EL F +YG +I I+ D
Sbjct: 113 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 172
Query: 453 -------YAFVHMERAEDAVEAIRGLDNTEFQG 530
F+ ++ +A EAI+GL+ + G
Sbjct: 173 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 205
Score = 50.1 bits (118), Expect = 5e-06
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Frame = +3
Query: 105 ALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAA 260
A +R L++ LP+ T++E+ LF QYG+++ I+ + GF+ + + A
Sbjct: 132 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 191
Query: 261 EDAIRNLHHYKLHGVN--INVEASKNKSKASTK 353
E+AI+ L+ K G I V+ + N S+ S++
Sbjct: 192 EEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,884,842
Number of extensions: 1281444
Number of successful extensions: 4674
Number of sequences better than 1.0e-05: 104
Number of HSP's gapped: 4482
Number of HSP's successfully gapped: 118
Length of query: 501
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 395
Effective length of database: 12,433,743
Effective search space: 4911328485
Effective search space used: 4911328485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012303
(1504 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113680.1| RNA-binding protein 4B [Homo sapiens]. 637 0.0
Alignment gi|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens]. 592 e-169
Alignment gi|NP_001185774.1| RBM14-RBM4 protein isoform 1 [Homo sapiens]. 394 e-110
Alignment gi|NP_001185773.1| RNA-binding protein 4 isoform 3 [Homo sapien... 280 2e-75
Alignment gi|NP_001185772.1| RNA-binding protein 4 isoform 2 [Homo sapien... 278 7e-75
Alignment gi|NP_006319.1| RNA-binding protein 14 isoform 1 [Homo sapiens]. 141 1e-33
Alignment gi|NP_001185765.1| RNA-binding protein 14 isoform 2 [Homo sapie... 132 8e-31
Alignment gi|NP_001185775.1| RBM14-RBM4 protein isoform 2 [Homo sapiens]. 93 7e-19
Alignment gi|NP_001185766.1| RNA-binding protein 14 isoform 3 [Homo sapie... 93 7e-19
Alignment gi|NP_941989.1| CUGBP Elav-like family member 1 isoform 2 [Homo... 72 2e-12
>ref|NP_113680.1| RNA-binding protein 4B [Homo sapiens].
Length = 359
Score = 637 bits (1642), Expect = 0.0
Identities = 316/359 (88%), Positives = 317/359 (88%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALDYYKRXXXXXXXXXXXXXXXXX 836
GRVADFTEQYNEQYGAVR PYTMGYGESMYYNDAYGALDYYKR
Sbjct: 181 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAAAAAASA 240
Query: 837 XXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSGXXXXXXXXXXXXXXXXXYYG 1016
QTMSHLPQVQST VTSHLNSTSVDPYDRHLLPNSG YYG
Sbjct: 241 YNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAATTSSYYG 300
Query: 1017 RDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRARYSAF 1193
RDRSPLRRAAA+LPTVGEGYGYGPESELSQASAA RNSLYDMARYEREQYVDRARYSAF
Sbjct: 301 RDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVDRARYSAF 359
>ref|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens].
Length = 364
Score = 592 bits (1527), Expect = e-169
Identities = 297/364 (81%), Positives = 308/364 (84%), Gaps = 5/364 (1%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT 656
AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP+DR+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS 180
Query: 657 GRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALD-YYKRXXXXXXXXXXXXXXXX 833
GRVAD TEQYNEQYGAVR PYTM YG+S+YYN+AYGALD YYKR
Sbjct: 181 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS 240
Query: 834 XXXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSG----XXXXXXXXXXXXXXX 1001
QT+S LPQVQ+TA+ SHL STS+DPYDRHLLP SG
Sbjct: 241 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS 300
Query: 1002 XXYYGRDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRAR 1181
YYGRDRSPLRRA A +PTVGEGYGYG ESELSQASAAARNSLYDMARYEREQY DRAR
Sbjct: 301 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR 360
Query: 1182 YSAF 1193
YSAF
Sbjct: 361 YSAF 364
>ref|NP_001185774.1| RBM14-RBM4 protein isoform 1 [Homo sapiens].
Length = 339
Score = 394 bits (1013), Expect = e-110
Identities = 209/365 (57%), Positives = 244/365 (66%), Gaps = 7/365 (1%)
Frame = +3
Query: 120 VKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
+K+F+GN+ + T +E+ +LF YG V+ C ++K + FVH+ + A AI LH ++L
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 297 H-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 473
G + VE S+ + + K+ VGN+S CT+QELR+ FE G VIECD+VK
Sbjct: 61 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------- 112
Query: 474 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDR 653
GKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP+DR
Sbjct: 113 ------------------GKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDR 154
Query: 654 TGRVADFTEQYNEQYGAVRPPYTMGYGESMYYNDAYGALD-YYKRXXXXXXXXXXXXXXX 830
+GRVAD TEQYNEQYGAVR PYTM YG+S+YYN+AYGALD YYKR
Sbjct: 155 SGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAA 214
Query: 831 XXXXXXXQTMSHLPQVQSTAVTSHLNSTSVDPYDRHLLPNSG----XXXXXXXXXXXXXX 998
QT+S LPQVQ+TA+ SHL STS+DPYDRHLLP SG
Sbjct: 215 SVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAA 274
Query: 999 XXXYYGRDRSPLRRAAAVLPTVGEGYGYGPESELSQASAAARNSLYDMARYEREQYVDRA 1178
YYGRDRSPLRRA A +PTVGEGYGYG ESELSQASAAARNSLYDMARYEREQY DRA
Sbjct: 275 STSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 334
Query: 1179 RYSAF 1193
RYSAF
Sbjct: 335 RYSAF 339
>ref|NP_001185773.1| RNA-binding protein 4 isoform 3 [Homo sapiens].
Length = 173
Score = 280 bits (717), Expect = 2e-75
Identities = 137/139 (98%), Positives = 138/139 (99%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQGK 533
AEDAVEAIRGLDNTEFQGK
Sbjct: 121 AEDAVEAIRGLDNTEFQGK 139
Score = 71.6 bits (174), Expect = 2e-12
Identities = 32/75 (42%), Positives = 51/75 (68%)
Frame = +3
Query: 351 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 530
KL +GN+ T QE+R+ FE+YG V+ECDI+K+Y FVH+E A +AIR L + + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 531 KRMHVQLSTSRLRTA 575
++V+ S ++ +T+
Sbjct: 63 VNINVEASKNKSKTS 77
>ref|NP_001185772.1| RNA-binding protein 4 isoform 2 [Homo sapiens].
Length = 143
Score = 278 bits (712), Expect = 7e-75
Identities = 136/138 (98%), Positives = 137/138 (99%)
Frame = +3
Query: 117 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 297 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 476
HGVNINVEASKNKSK STKLHVGNISPTCTN+ELRAKFEEYGPVIECDIVKDYAFVHMER
Sbjct: 61 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 477 AEDAVEAIRGLDNTEFQG 530
AEDAVEAIRGLDNTEFQG
Sbjct: 121 AEDAVEAIRGLDNTEFQG 138
Score = 71.6 bits (174), Expect = 2e-12
Identities = 32/75 (42%), Positives = 51/75 (68%)
Frame = +3
Query: 351 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 530
KL +GN+ T QE+R+ FE+YG V+ECDI+K+Y FVH+E A +AIR L + + G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 531 KRMHVQLSTSRLRTA 575
++V+ S ++ +T+
Sbjct: 63 VNINVEASKNKSKTS 77
>ref|NP_006319.1| RNA-binding protein 14 isoform 1 [Homo sapiens].
Length = 669
Score = 141 bits (356), Expect = 1e-33
Identities = 73/162 (45%), Positives = 106/162 (65%), Gaps = 2/162 (1%)
Frame = +3
Query: 120 VKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
+K+F+GN+ + T +E+ +LF YG V+ C ++K + FVH+ + A AI LH ++L
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 297 H-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 473
G + VE S+ + + K+ VGN+S CT+QELR+ FE G VIECD+VKDYAFVHME
Sbjct: 61 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME 120
Query: 474 RAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 599
+ DA AI L+ E +GKR++V+LST + PG+ QSG
Sbjct: 121 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG 162
>ref|NP_001185765.1| RNA-binding protein 14 isoform 2 [Homo sapiens].
Length = 156
Score = 132 bits (332), Expect = 8e-31
Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Frame = +3
Query: 120 VKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
+K+F+GN+ + T +E+ +LF YG V+ C ++K + FVH+ + A AI LH ++L
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 297 H-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHME 473
G + VE S+ + + K+ VGN+S CT+QELR+ FE G VIECD+VKDYAFVHME
Sbjct: 61 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME 120
Query: 474 RAEDAVEAIRGLDNTEFQGKRMHVQLST 557
+ DA AI L+ E +GKR++V+LST
Sbjct: 121 KEADAKAAIAQLNGKEVKGKRINVELST 148
>ref|NP_001185775.1| RBM14-RBM4 protein isoform 2 [Homo sapiens].
Length = 118
Score = 92.8 bits (229), Expect = 7e-19
Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Frame = +3
Query: 120 VKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
+K+F+GN+ + T +E+ +LF YG V+ C ++K + FVH+ + A AI LH ++L
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 297 H-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK 449
G + VE S+ + + K+ VGN+S CT+QELR+ FE G VIECD+VK
Sbjct: 61 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
Score = 49.7 bits (117), Expect = 7e-06
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +3
Query: 351 KLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 527
K+ VGN+ T +EL A F YG V+ C ++K +AFVHM A+ AI L E +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 528 -GKRMHVQLSTSR 563
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
>ref|NP_001185766.1| RNA-binding protein 14 isoform 3 [Homo sapiens].
Length = 119
Score = 92.8 bits (229), Expect = 7e-19
Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Frame = +3
Query: 120 VKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 296
+K+F+GN+ + T +E+ +LF YG V+ C ++K + FVH+ + A AI LH ++L
Sbjct: 1 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 297 H-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK 449
G + VE S+ + + K+ VGN+S CT+QELR+ FE G VIECD+VK
Sbjct: 61 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 112
Score = 49.7 bits (117), Expect = 7e-06
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +3
Query: 351 KLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ 527
K+ VGN+ T +EL A F YG V+ C ++K +AFVHM A+ AI L E +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 528 -GKRMHVQLSTSR 563
G+ + V++S R
Sbjct: 62 PGRALVVEMSRPR 74
>ref|NP_941989.1| CUGBP Elav-like family member 1 isoform 2 [Homo sapiens].
Length = 483
Score = 71.6 bits (174), Expect = 2e-12
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 16/126 (12%)
Frame = +3
Query: 120 VKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG----------FVHIEDKTAAEDA 269
+K+F+G +PR +E+++R LFEQYG V E +++++ FV + AA +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 270 IRNLHHYKL-----HGVNIN-VEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVI 431
LH+ K+ H + + ++ KN + KL +G IS CT ++R F +G +
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 432 ECDIVK 449
EC I++
Sbjct: 136 ECRILR 141
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,540,554
Number of extensions: 1522689
Number of successful extensions: 5509
Number of sequences better than 1.0e-05: 119
Number of HSP's gapped: 5339
Number of HSP's successfully gapped: 151
Length of query: 501
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 394
Effective length of database: 14,770,016
Effective search space: 5819386304
Effective search space used: 5819386304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012303
(1504 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896152.2| Sus scrofa unplaced genomic scaffold ChrUScaf4036 1358 0.0
>gb|GL896152.2| Sus scrofa unplaced genomic scaffold ChrUScaf4036
Length = 87155
Score = 1358 bits (685), Expect = 0.0
Identities = 685/685 (100%)
Strand = Plus / Plus
Query: 523 ttcaaggcaaacgcatgcacgtgcagttgtccactagccggcttcggactgcgcccggga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12457 ttcaaggcaaacgcatgcacgtgcagttgtccactagccggcttcggactgcgcccggga 12516
Query: 583 tgggagaccagagcggctgctatcggtgtgggaaagaggggcactggtccaaagagtgcc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517 tgggagaccagagcggctgctatcggtgtgggaaagaggggcactggtccaaagagtgcc 12576
Query: 643 cagtagatcgtacgggtcgtgtggcggacttcaccgaacagtacaatgaacagtacggag 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12577 cagtagatcgtacgggtcgtgtggcggacttcaccgaacagtacaatgaacagtacggag 12636
Query: 703 cagtgcgtccaccttacaccatgggctacggggaatccatgtattacaacgatgcatatg 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12637 cagtgcgtccaccttacaccatgggctacggggaatccatgtattacaacgatgcatatg 12696
Query: 763 gagcgctcgactactataagcgttaccgagtccgctcttatgaggcagtggcggcggcag 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12697 gagcgctcgactactataagcgttaccgagtccgctcttatgaggcagtggcggcggcag 12756
Query: 823 cagcagcttccgcgtacaactacgcagagcagaccatgtcccatctgcctcaagtccaga 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12757 cagcagcttccgcgtacaactacgcagagcagaccatgtcccatctgcctcaagtccaga 12816
Query: 883 gcacagctgtgaccagtcacctcaactccacttccgttgatccctacgacagacacctgt 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12817 gcacagctgtgaccagtcacctcaactccacttccgttgatccctacgacagacacctgt 12876
Query: 943 tgcctaactcaggcgctgctgccacttcagctgctatggctgctgccgctgccaccactt 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12877 tgcctaactcaggcgctgctgccacttcagctgctatggctgctgccgctgccaccactt 12936
Query: 1003 cctcctattatggaagggacaggagccccctacgtcgcgctgcagctgtgctccccacag 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12937 cctcctattatggaagggacaggagccccctacgtcgcgctgcagctgtgctccccacag 12996
Query: 1063 ttggagaaggatacggttatgggccagaaagcgagttgtctcaggcttcagcagcggcac 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12997 ttggagaaggatacggttatgggccagaaagcgagttgtctcaggcttcagcagcggcac 13056
Query: 1123 ggaattctctgtatgacatggcccggtatgagcgggagcagtatgtggaccgagcacggt 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13057 ggaattctctgtatgacatggcccggtatgagcgggagcagtatgtggaccgagcacggt 13116
Query: 1183 attcagccttttaaaaactggaggt 1207
|||||||||||||||||||||||||
Sbjct: 13117 attcagccttttaaaaactggaggt 13141
Score = 620 bits (313), Expect = e-175
Identities = 313/313 (100%)
Strand = Plus / Plus
Query: 103 aggctcttgtcaggatggtaaagctgttcattgggaacctgccccgggaggccacagagc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838 aggctcttgtcaggatggtaaagctgttcattgggaacctgccccgggaggccacagagc 4897
Query: 163 aggagatccgctcactgttcgagcagtatgggaaggtgctggaatgtgacatcattaaga 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4898 aggagatccgctcactgttcgagcagtatgggaaggtgctggaatgtgacatcattaaga 4957
Query: 223 actacggctttgtacacatagaggacaagacggcggccgaggatgccattcgcaacctgc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4958 actacggctttgtacacatagaggacaagacggcggccgaggatgccattcgcaacctgc 5017
Query: 283 accactacaagctgcacggggtgaacatcaacgtggaagccagcaagaataagagcaaag 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5018 accactacaagctgcacggggtgaacatcaacgtggaagccagcaagaataagagcaaag 5077
Query: 343 cttcaaccaagttgcatgtgggcaacatcagtcctacttgtaccaaccaagagcttcggg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5078 cttcaaccaagttgcatgtgggcaacatcagtcctacttgtaccaaccaagagcttcggg 5137
Query: 403 ccaaatttgagga 415
|||||||||||||
Sbjct: 5138 ccaaatttgagga 5150
Score = 490 bits (247), Expect = e-135
Identities = 293/303 (96%), Gaps = 4/303 (1%)
Strand = Plus / Plus
Query: 1204 aggtaggataattgcggactgaaccctcgggctgcggtcatatatgagaacttgctccgc 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15598 aggtaggataattgcggactgaaccctcgggctgcggtcatatatgagaacttgctccgc 15657
Query: 1264 gcggtcccctttgccgggatgtttccattgcttcatgtttcagtaaacaaaggagtttgt 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15658 gcggtcccctttgccgggatgtttccattgcttcatgtttcagtaaacaaaggagtttgt 15717
Query: 1324 gacccactatgttttctttcttaatttaattcttctaagttgactcttctttcctcctga 1383
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15718 gaccaactatgttttctttcttaatttaattcttctaagttgactcttctttcctcctga 15777
Query: 1384 tactagtctttgtagcctttcactctgttccnttata-tctcagcctctgagcagcccta 1442
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 15778 tactagtctttgtagcctttcactctgttcc-ttatattctcagcctctgagcagcccta 15836
Query: 1443 ggtaagggatatgctgggcat-ccctttttcctgtacagtggaacccccctctatcttgc 1501
||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 15837 ggtaaggattatgct-ggcatcccctttttcctgtacagtggaaccccctcttatcttgc 15895
Query: 1502 ttt 1504
|||
Sbjct: 15896 ttt 15898
Score = 472 bits (238), Expect = e-130
Identities = 265/274 (96%)
Strand = Plus / Minus
Query: 116 gatggtaaagctgttcattgggaacctgccccgggaggccacagagcaggagatccgctc 175
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 41222 gatggtgaagctgttcattggaaacctgccccgggaggccacagagcaggagatccgctc 41163
Query: 176 actgttcgagcagtatgggaaggtgctggaatgtgacatcattaagaactacggctttgt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41162 actgttcgagcagtatgggaaggtgctggaatgtgacatcattaagaactacggctttgt 41103
Query: 236 acacatagaggacaagacggcggccgaggatgccattcgcaacctgcaccactacaagct 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41102 acacatagaggacaagacggcggccgaggatgccattcgcaacctgcaccactacaagct 41043
Query: 296 gcacggggtgaacatcaacgtggaagccagcaagaataagagcaaagcttcaaccaagtt 355
|||||||||||||||||||||||||||||||||||||||||||||| | || || |||||
Sbjct: 41042 gcacggggtgaacatcaacgtggaagccagcaagaataagagcaaaacctccacaaagtt 40983
Query: 356 gcatgtgggcaacatcagtcctacttgtaccaac 389
||| || |||||||||||||||||||| ||||||
Sbjct: 40982 gcacgtaggcaacatcagtcctacttgcaccaac 40949
Score = 274 bits (138), Expect = 1e-70
Identities = 222/250 (88%)
Strand = Plus / Minus
Query: 523 ttcaaggcaaacgcatgcacgtgcagttgtccactagccggcttcggactgcgcccggga 582
||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 37382 ttcaaggcaaacgaatgcacgtgcagttgtccaccagccggcttaggactgcgcccggga 37323
Query: 583 tgggagaccagagcggctgctatcggtgtgggaaagaggggcactggtccaaagagtgcc 642
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 37322 tgggagaccagagcggctgctatcggtgcgggaaagaggggcactggtccaaagagtgtc 37263
Query: 643 cagtagatcgtacgggtcgtgtggcggacttcaccgaacagtacaatgaacagtacggag 702
| |||||||| |||| || ||||| ||||| ||||| || || ||||| ||||| ||||
Sbjct: 37262 cgatagatcgttcgggccgagtggcagactttaccgagcaatataatgagcagtatggag 37203
Query: 703 cagtgcgtccaccttacaccatgggctacggggaatccatgtattacaacgatgcatatg 762
||||||| |||||||||||||| |||| ||||| || ||||||||||| | || || |
Sbjct: 37202 cagtgcgcacaccttacaccatgagctatggggattcattgtattacaacaacgcgtacg 37143
Query: 763 gagcgctcga 772
||||||||||
Sbjct: 37142 gagcgctcga 37133
Score = 139 bits (70), Expect = 5e-30
Identities = 148/174 (85%)
Strand = Plus / Minus
Query: 1024 ggagccccctacgtcgcgctgcagctgtgctccccacagttggagaaggatacggttatg 1083
|||||||||| ||||||||| |||| ||||||| |||||||| || |||||||| |
Sbjct: 36788 ggagccccctgcgtcgcgctacagccccagtccccactgttggagagggctacggttacg 36729
Query: 1084 ggccagaaagcgagttgtctcaggcttcagcagcggcacggaattctctgtatgacatgg 1143
||| || || |||||||| || |||||||| || || |||||||| ||||| |||||||
Sbjct: 36728 ggcatgagagtgagttgtcccaagcttcagcggccgcgcggaattccctgtacgacatgg 36669
Query: 1144 cccggtatgagcgggagcagtatgtggaccgagcacggtattcagccttttaaa 1197
|||||||||||||||||||||||| ||| || || |||||||||||||||||||
Sbjct: 36668 cccggtatgagcgggagcagtatgcggatcgggcgcggtattcagccttttaaa 36615
Score = 117 bits (59), Expect = 2e-23
Identities = 65/67 (97%)
Strand = Plus / Minus
Query: 463 tacacatggagcgggcagaggatgcggtggaggccatcaggggccttgacaacacagagt 522
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 40847 tacacatggagcgggcagaggatgcagtggaggccatcagaggccttgacaacacagagt 40788
Query: 523 ttcaagg 529
|||||||
Sbjct: 40787 ttcaagg 40781
Score = 111 bits (56), Expect = 1e-21
Identities = 122/144 (84%)
Strand = Plus / Minus
Query: 834 gcgtacaactacgcagagcagaccatgtcccatctgcctcaagtccagagcacagctgtg 893
||||| || ||||||||||||||| |||| || ||||| |||||||||| |||||| ||
Sbjct: 36993 gcgtataattacgcagagcagaccttgtctcagctgccacaagtccagaacacagccatg 36934
Query: 894 accagtcacctcaactccacttccgttgatccctacgacagacacctgttgcctaactca 953
|||||||||||| |||||| || | ||||||||||| |||||||||||||| | ||||
Sbjct: 36933 gccagtcacctcacctccacctctctcgatccctacgatagacacctgttgccgacctca 36874
Query: 954 ggcgctgctgccacttcagctgct 977
|| |||||||| || ||||||||
Sbjct: 36873 ggagctgctgctgctacagctgct 36850
Score = 83.8 bits (42), Expect = 3e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 488 ggtggaggccatcaggggccttgacaacacagagtttcaagg 529
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5251 ggtggaggccatcaggggccttgacaacacagagtttcaagg 5292
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,789,613
Number of extensions: 838
Number of successful extensions: 838
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 9
Length of query: 1504
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1483
Effective length of database: 2,808,413,156
Effective search space: 4164876710348
Effective search space used: 4164876710348
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)