Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012317
(1105 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543793.1| PREDICTED: similar to Rho GDP-dissociation inhi... 369 e-102
Alignment gi|XP_849933.1| PREDICTED: similar to Rho GDP dissociation inhi... 287 1e-77
Alignment gi|XP_854314.1| PREDICTED: similar to Rho GDP-dissociation inhi... 250 2e-66
>ref|XP_543793.1| PREDICTED: similar to Rho GDP-dissociation inhibitor 2 (Rho GDI 2)
(Rho-GDI beta) (Ly-GDI) [Canis familiaris].
Length = 200
Score = 369 bits (947), Expect = e-102
Identities = 176/181 (97%), Positives = 179/181 (98%)
Frame = +2
Query: 131 KLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAP 310
KLNYKPPPQKSLKELQEMDKDDESL KYKKTLLGDGPVVADP+APNVTVTRLTLVCESAP
Sbjct: 20 KLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVADPTAPNVTVTRLTLVCESAP 79
Query: 311 GPITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKAT 490
GPITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVN+DIVSGLKYVQHTYRTGVKVDKAT
Sbjct: 80 GPITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKAT 139
Query: 491 FMVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWT 670
FMVGSYGPRPEEYEFLTP EEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKK+WT
Sbjct: 140 FMVGSYGPRPEEYEFLTPAEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKEWT 199
Query: 671 E 673
E
Sbjct: 200 E 200
>ref|XP_849933.1| PREDICTED: similar to Rho GDP dissociation inhibitor (GDI) alpha
[Canis familiaris].
Length = 204
Score = 287 bits (734), Expect = 1e-77
Identities = 131/180 (72%), Positives = 158/180 (87%)
Frame = +2
Query: 134 LNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPG 313
+NYKPP QKS++E+QE+DKDDESL KYK+ LLG V ADP+ PNV VTRLTLVC +APG
Sbjct: 25 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPG 84
Query: 314 PITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATF 493
P+ +DLTGDLE+ KK++FVLKEGVEYR+KI F+VN++IVSG+KY+QHTYR GVK+DK +
Sbjct: 85 PLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY 144
Query: 494 MVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWTE 673
MVGSYGPR EEYEFLTP EEAPKGMLARG+Y+ KS FTDDDK DHL+WEWNL+IKK+W +
Sbjct: 145 MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKKEWKD 204
>ref|XP_854314.1| PREDICTED: similar to Rho GDP-dissociation inhibitor 3 (Rho GDI 3)
(Rho-GDI gamma) [Canis familiaris].
Length = 246
Score = 250 bits (638), Expect = 2e-66
Identities = 119/176 (67%), Positives = 143/176 (81%)
Frame = +2
Query: 140 YKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPGPI 319
Y+ P +KSL+ELQ++D +DESL KYK+TLLG P V D S PNV VTRLTL+ E APGPI
Sbjct: 69 YRAPGRKSLQELQQLDPEDESLAKYKQTLLGPLPPVVDESLPNVQVTRLTLMSEQAPGPI 128
Query: 320 TMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATFMV 499
TMDLTG+L AL+ + FVLKEGV+Y+VKI FKVN++IVSGLK V HTYR G++VDKA +MV
Sbjct: 129 TMDLTGELAALQGQVFVLKEGVDYKVKITFKVNREIVSGLKCVHHTYRQGLRVDKAVYMV 188
Query: 500 GSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW 667
GSYGPR +EYEF+TP EEAP+G L RG Y SFFTDDD+ DHL+WEW L I +DW
Sbjct: 189 GSYGPRAQEYEFVTPVEEAPRGALVRGAYVVTSFFTDDDRTDHLSWEWGLHICQDW 244
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,500,655
Number of extensions: 1285933
Number of successful extensions: 6297
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5986
Number of HSP's successfully gapped: 3
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012317
(1105 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786991.1| rho GDP-dissociation inhibitor 2 [Bos taurus]. 373 e-103
Alignment gi|NP_788823.1| rho GDP-dissociation inhibitor 1 [Bos taurus]. 286 3e-77
Alignment gi|XP_001249810.1| PREDICTED: Rho GDP dissociation inhibitor (G... 286 3e-77
Alignment gi|NP_001069754.1| rho GDP-dissociation inhibitor 3 [Bos taurus]. 241 1e-63
>ref|NP_786991.1| rho GDP-dissociation inhibitor 2 [Bos taurus].
Length = 200
Score = 373 bits (958), Expect = e-103
Identities = 179/182 (98%), Positives = 181/182 (99%)
Frame = +2
Query: 128 GKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESA 307
GKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADP+APNVTVTRLTLVCESA
Sbjct: 19 GKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPTAPNVTVTRLTLVCESA 78
Query: 308 PGPITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKA 487
PGPITMDLTGDLEALKKETFVLKEGVEYRVKI+FKVNKDIVSGLKYVQHTYRTGVKVDKA
Sbjct: 79 PGPITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDIVSGLKYVQHTYRTGVKVDKA 138
Query: 488 TFMVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW 667
TFMVGSYGPRPEEYEFLTP EEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW
Sbjct: 139 TFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW 198
Query: 668 TE 673
TE
Sbjct: 199 TE 200
>ref|NP_788823.1| rho GDP-dissociation inhibitor 1 [Bos taurus].
Length = 204
Score = 286 bits (731), Expect = 3e-77
Identities = 130/180 (72%), Positives = 158/180 (87%)
Frame = +2
Query: 134 LNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPG 313
+NYKPP QKS++E+QE+DKDDESL KYK+ LLG V ADP+ PNV VTRLTLVC +APG
Sbjct: 25 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPG 84
Query: 314 PITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATF 493
P+ +DLTGDLE+ KK++FVLKEGVEYR+KI F+VN++IVSG+KY+QHTYR GVK+DK +
Sbjct: 85 PLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY 144
Query: 494 MVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWTE 673
MVGSYGPR EEYEFLTP EEAPKGMLARG+Y+ KS FTDDD+ DHL+WEWNL+IKK+W +
Sbjct: 145 MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD 204
>ref|XP_001249810.1| PREDICTED: Rho GDP dissociation inhibitor (GDI) alpha isoform 1
[Bos taurus].
Length = 204
Score = 286 bits (731), Expect = 3e-77
Identities = 130/180 (72%), Positives = 158/180 (87%)
Frame = +2
Query: 134 LNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPG 313
+NYKPP QKS++E+QE+DKDDESL KYK+ LLG V ADP+ PNV VTRLTLVC +APG
Sbjct: 25 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPG 84
Query: 314 PITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATF 493
P+ +DLTGDLE+ KK++FVLKEGVEYR+KI F+VN++IVSG+KY+QHTYR GVK+DK +
Sbjct: 85 PLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY 144
Query: 494 MVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWTE 673
MVGSYGPR EEYEFLTP EEAPKGMLARG+Y+ KS FTDDD+ DHL+WEWNL+IKK+W +
Sbjct: 145 MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD 204
>ref|NP_001069754.1| rho GDP-dissociation inhibitor 3 [Bos taurus].
Length = 225
Score = 241 bits (614), Expect = 1e-63
Identities = 114/176 (64%), Positives = 137/176 (77%)
Frame = +2
Query: 140 YKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPGPI 319
Y+ P +KSL E+Q++D DDESL KYK+ LLG DPS PNV VTRLTL+ E APGPI
Sbjct: 48 YRAPGKKSLLEIQQLDPDDESLVKYKRALLGPVLPAVDPSLPNVQVTRLTLISEQAPGPI 107
Query: 320 TMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATFMV 499
MDLTG+L ALK + FVLKEGV+Y+VKI FKVNK+IVSGLK + HTYR G++VDKA +MV
Sbjct: 108 VMDLTGELAALKNQVFVLKEGVDYKVKITFKVNKEIVSGLKCLHHTYRHGLRVDKAVYMV 167
Query: 500 GSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW 667
GSYGP +EYEF+TP EEAP+G L RG Y SFFTDDD+ HL+WEW L + +DW
Sbjct: 168 GSYGPSAQEYEFVTPVEEAPRGALVRGAYVVTSFFTDDDRTAHLSWEWGLYVCQDW 223
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,416,726
Number of extensions: 1238936
Number of successful extensions: 6153
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5834
Number of HSP's successfully gapped: 4
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012317
(1105 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928583.2| PREDICTED: rho GDP-dissociation inhibitor 2 ... 379 e-105
Alignment gi|NP_001188313.1| rho GDP-dissociation inhibitor 1 [Sus scrofa]. 285 3e-77
>ref|XP_001928583.2| PREDICTED: rho GDP-dissociation inhibitor 2 [Sus scrofa].
Length = 200
Score = 379 bits (974), Expect = e-105
Identities = 182/182 (100%), Positives = 182/182 (100%)
Frame = +2
Query: 128 GKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESA 307
GKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESA
Sbjct: 19 GKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESA 78
Query: 308 PGPITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKA 487
PGPITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKA
Sbjct: 79 PGPITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKA 138
Query: 488 TFMVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW 667
TFMVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW
Sbjct: 139 TFMVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW 198
Query: 668 TE 673
TE
Sbjct: 199 TE 200
>ref|NP_001188313.1| rho GDP-dissociation inhibitor 1 [Sus scrofa].
Length = 204
Score = 285 bits (729), Expect = 3e-77
Identities = 130/180 (72%), Positives = 157/180 (87%)
Frame = +2
Query: 134 LNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPG 313
+NYKPP QKS++E+QE+DKDDESL KYK+ LLG V ADP+ PNV VTRLTLVC +APG
Sbjct: 25 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPG 84
Query: 314 PITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATF 493
P+ +DLTGDLE+ KK++FVLKEGVEYR+KI F+VN++IVSG+KY+QHTYR GVK+DK +
Sbjct: 85 PLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY 144
Query: 494 MVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWTE 673
MVGSYGPR EEYEFLTP EEAPKGMLARG+Y KS FTDDD+ DHL+WEWNL+IKK+W +
Sbjct: 145 MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYSIKSRFTDDDRTDHLSWEWNLTIKKEWKD 204
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,409,688
Number of extensions: 801281
Number of successful extensions: 3910
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3720
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012317
(1105 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031512.1| rho GDP-dissociation inhibitor 2 [Mus musculus]. 355 3e-98
Alignment gi|NP_598557.3| rho GDP-dissociation inhibitor 1 [Mus musculus]. 286 2e-77
Alignment gi|NP_032139.1| rho GDP-dissociation inhibitor 3 [Mus musculus]. 238 8e-63
>ref|NP_031512.1| rho GDP-dissociation inhibitor 2 [Mus musculus].
Length = 200
Score = 355 bits (912), Expect = 3e-98
Identities = 168/181 (92%), Positives = 177/181 (97%)
Frame = +2
Query: 131 KLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAP 310
KLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGD PVVADP+ PNVTVTRL+LVC+SAP
Sbjct: 20 KLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVADPTVPNVTVTRLSLVCDSAP 79
Query: 311 GPITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKAT 490
GPITMDLTGDLEALKK+TFVLKEG+EYRVKI+FKVNKDIVSGLKYVQHTYRTG++VDKAT
Sbjct: 80 GPITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQHTYRTGMRVDKAT 139
Query: 491 FMVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWT 670
FMVGSYGPRPEEYEFLTP EEAPKGMLARGTYHNKSFFTDDDK DHLTWEWNL+IKKDWT
Sbjct: 140 FMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAIKKDWT 199
Query: 671 E 673
E
Sbjct: 200 E 200
>ref|NP_598557.3| rho GDP-dissociation inhibitor 1 [Mus musculus].
Length = 204
Score = 286 bits (733), Expect = 2e-77
Identities = 131/180 (72%), Positives = 158/180 (87%)
Frame = +2
Query: 134 LNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPG 313
+NYKPP QKS++E+QE+DKDDESL KYK+ LLG V ADP+ PNV VTRLTLVC +APG
Sbjct: 25 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVIVTRLTLVCSTAPG 84
Query: 314 PITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATF 493
P+ +DLTGDLE+ KK++FVLKEGVEYR+KI F+VN++IVSG+KY+QHTYR GVK+DK +
Sbjct: 85 PLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY 144
Query: 494 MVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWTE 673
MVGSYGPR EEYEFLTP EEAPKGMLARG+Y+ KS FTDDDK DHL+WEWNL+IKK+W +
Sbjct: 145 MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKKEWKD 204
>ref|NP_032139.1| rho GDP-dissociation inhibitor 3 [Mus musculus].
Length = 225
Score = 238 bits (606), Expect = 8e-63
Identities = 112/178 (62%), Positives = 140/178 (78%)
Frame = +2
Query: 140 YKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPGPI 319
Y+ P +KS+ + ++D D SL KYK+ LLG P + DPS PNV VTRLTL+ E APGPI
Sbjct: 48 YQAPGKKSMLAIWQLDPGDVSLVKYKQALLGPLPPIMDPSLPNVQVTRLTLLTEQAPGPI 107
Query: 320 TMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATFMV 499
MDLTGDL+ALK + FVLKEG+EY+VKI FKVNK+IVSGLK + HTYR G++VDKA FMV
Sbjct: 108 IMDLTGDLDALKNQVFVLKEGIEYKVKITFKVNKEIVSGLKCLHHTYRRGLRVDKAIFMV 167
Query: 500 GSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWTE 673
GSYGPR +EYEF+T EEAP+G LARG Y +S FTDDD+ +HL+WEW+L + +DW +
Sbjct: 168 GSYGPRAQEYEFVTSVEEAPRGALARGLYVVRSLFTDDDRLNHLSWEWHLHVCQDWKD 225
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,523,626
Number of extensions: 1040755
Number of successful extensions: 5100
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4791
Number of HSP's successfully gapped: 3
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012317
(1105 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001166.3| rho GDP-dissociation inhibitor 2 [Homo sapiens]. 356 2e-98
Alignment gi|NP_001172006.1| rho GDP-dissociation inhibitor 1 isoform a [... 286 2e-77
Alignment gi|NP_004300.1| rho GDP-dissociation inhibitor 1 isoform a [Hom... 286 2e-77
Alignment gi|NP_001167.2| rho GDP-dissociation inhibitor 3 [Homo sapiens]. 235 6e-62
Alignment gi|NP_001172007.1| rho GDP-dissociation inhibitor 1 isoform b [... 194 1e-49
>ref|NP_001166.3| rho GDP-dissociation inhibitor 2 [Homo sapiens].
Length = 201
Score = 356 bits (913), Expect = 2e-98
Identities = 170/181 (93%), Positives = 173/181 (95%)
Frame = +2
Query: 131 KLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAP 310
KLNYKPPPQKSLKELQEMDKDDESL KYKKTLLGDGPVV DP APNV VTRLTLVCESAP
Sbjct: 21 KLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAP 80
Query: 311 GPITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKAT 490
GPITMDLTGDLEALKKET VLKEG EYRVKIHFKVN+DIVSGLKYVQHTYRTGVKVDKAT
Sbjct: 81 GPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKAT 140
Query: 491 FMVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWT 670
FMVGSYGPRPEEYEFLTP EEAPKGMLARGTYHNKSFFTDDDK DHL+WEWNLSIKK+WT
Sbjct: 141 FMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWT 200
Query: 671 E 673
E
Sbjct: 201 E 201
>ref|NP_001172006.1| rho GDP-dissociation inhibitor 1 isoform a [Homo sapiens].
Length = 204
Score = 286 bits (733), Expect = 2e-77
Identities = 132/180 (73%), Positives = 156/180 (86%)
Frame = +2
Query: 134 LNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPG 313
+NYKPP QKS++E+QE+DKDDESL KYK+ LLG V ADP+ PNV VT LTLVC SAPG
Sbjct: 25 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPG 84
Query: 314 PITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATF 493
P+ +DLTGDLE+ KK++FVLKEGVEYR+KI F+VN++IVSG+KY+QHTYR GVK+DK +
Sbjct: 85 PLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY 144
Query: 494 MVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWTE 673
MVGSYGPR EEYEFLTP EEAPKGMLARG+Y KS FTDDDK DHL+WEWNL+IKKDW +
Sbjct: 145 MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD 204
>ref|NP_004300.1| rho GDP-dissociation inhibitor 1 isoform a [Homo sapiens].
Length = 204
Score = 286 bits (733), Expect = 2e-77
Identities = 132/180 (73%), Positives = 156/180 (86%)
Frame = +2
Query: 134 LNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPG 313
+NYKPP QKS++E+QE+DKDDESL KYK+ LLG V ADP+ PNV VT LTLVC SAPG
Sbjct: 25 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPG 84
Query: 314 PITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATF 493
P+ +DLTGDLE+ KK++FVLKEGVEYR+KI F+VN++IVSG+KY+QHTYR GVK+DK +
Sbjct: 85 PLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY 144
Query: 494 MVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWTE 673
MVGSYGPR EEYEFLTP EEAPKGMLARG+Y KS FTDDDK DHL+WEWNL+IKKDW +
Sbjct: 145 MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD 204
>ref|NP_001167.2| rho GDP-dissociation inhibitor 3 [Homo sapiens].
Length = 225
Score = 235 bits (599), Expect = 6e-62
Identities = 110/178 (61%), Positives = 135/178 (75%)
Frame = +2
Query: 140 YKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPGPI 319
Y+ P +KSL E++++D DD SL KYK+ LLG P DPS PNV VTRLTL+ E APGP+
Sbjct: 48 YRAPGRKSLLEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPV 107
Query: 320 TMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATFMV 499
MDLTGDL LK + FVLKEGV+YRVKI FKV+++IVSGLK + HTYR G++VDK +MV
Sbjct: 108 VMDLTGDLAVLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMV 167
Query: 500 GSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWTE 673
GSYGP +EYEF+TP EEAP+G L RG Y S FTDDD+ HL+WEW L I +DW +
Sbjct: 168 GSYGPSAQEYEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD 225
>ref|NP_001172007.1| rho GDP-dissociation inhibitor 1 isoform b [Homo sapiens].
Length = 160
Score = 194 bits (493), Expect = 1e-49
Identities = 97/180 (53%), Positives = 119/180 (66%)
Frame = +2
Query: 134 LNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADPSAPNVTVTRLTLVCESAPG 313
+NYKPP QKS++E+QE+DKDDESL KYK+ LLG V ADP+ PNV VT LTLVC SAPG
Sbjct: 25 VNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTGLTLVCSSAPG 84
Query: 314 PITMDLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATF 493
P+ +DLTGDLE+ KK++FVLKEGVEYR+KI F+VN++IVSG+KY+QHTYR GVK
Sbjct: 85 PLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK------ 138
Query: 494 MVGSYGPRPEEYEFLTPTEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWTE 673
+DDK DHL+WEWNL+IKKDW +
Sbjct: 139 --------------------------------------NDDKTDHLSWEWNLTIKKDWKD 160
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,424,267
Number of extensions: 1256437
Number of successful extensions: 6128
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5777
Number of HSP's successfully gapped: 6
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012317
(1105 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1191 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 1191 bits (601), Expect = 0.0
Identities = 627/633 (99%), Gaps = 2/633 (0%)
Strand = Plus / Plus
Query: 475 agtggataaagcaacattcatggttggcagctacgggcctcgaccagaggagtatgaatt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60986604 agtggataaagcaacattcatggttggcagctacgggcctcgaccagaggagtatgaatt 60986663
Query: 535 tctgactccaaccgaagaggcccccaagggcatgctggcccgaggcacctaccacaacaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60986664 tctgactccaaccgaagaggcccccaagggcatgctggcccgaggcacctaccacaacaa 60986723
Query: 595 gtccttctttaccgatgatgacaagcacgaccaccttacctgggagtggaacctgtccat 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60986724 gtccttctttaccgatgatgacaagcacgaccaccttacctgggagtggaacctgtccat 60986783
Query: 655 taagaaggactggacggaatgagcacctctgcccatcccttcccctcacacttgccatcg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60986784 taagaaggactggacggaatgagcacctctgcccatcccttcccctcacacttgccatcg 60986843
Query: 715 gaagagcccacagtcatggtcgccgcccactgccccatccctccccgcctcaccatcgcg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60986844 gaagagcccacagtcatggtcgccgcccactgccccatccctccccgcctcaccatcgcg 60986903
Query: 775 gcagggccccttccccagcactcccctccctacgttcccaccttcgttattgctgcgtcc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60986904 gcagggccccttccccagcactcccctccctacgttcccaccttcgttattgctgcgtcc 60986963
Query: 835 tcctctacactgtcccccaccgtgcaacctcctcccacccctgcacaagatgcttcttca 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60986964 tcctctacactgtcccccaccgtgcaacctcctcccacccctgcacaagatgcttcttca 60987023
Query: 895 aacctgggctttcatcctgccccacccttccgatcccctgtcatggccagatttccgaag 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60987024 aacctgggctttcatcctgccccacccttccgatcccctgtcatggccagatttccgaag 60987083
Query: 955 ttcttggtcccaacctaagatcatttactttttccctcttttattcccattcaagc-act 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 60987084 ttcttggtcccaacctaagatcatttactttttccctcttttattcccattcaagcaact 60987143
Query: 1014 agta-cccggaaatgggcaagctatcactagcagtcctttgccttgggttcccggatctc 1072
|||| || |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 60987144 agtagccaggaaatgggcaagctatcactagcagtcctttgcattgggttccaggatctc 60987203
Query: 1073 attcccacccctggatttttctggggttgctgc 1105
||||||||||||||||||||||| |||||||||
Sbjct: 60987204 attcccacccctggatttttctgtggttgctgc 60987236
Score = 365 bits (184), Expect = 3e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 68 atcaaaatgactgaaaaggacccagaaccacacctggaggaggacgacgatgagctagat 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60975477 atcaaaatgactgaaaaggacccagaaccacacctggaggaggacgacgatgagctagat 60975536
Query: 128 ggcaagctcaattataagcctccacctcagaagtccctgaaggagctgcaagagatggac 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60975537 ggcaagctcaattataagcctccacctcagaagtccctgaaggagctgcaagagatggac 60975596
Query: 188 aaagatgatgaaagtctaactaagtacaagaaaacgctcctgggggacggtcctgtagta 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60975597 aaagatgatgaaagtctaactaagtacaagaaaacgctcctgggggacggtcctgtagta 60975656
Query: 248 gcag 251
||||
Sbjct: 60975657 gcag 60975660
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 248 gcagacccttcggcccccaatgtcactgtcacccgcctcaccctggtttgtgaaagtgcc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60976488 gcagacccttcggcccccaatgtcactgtcacccgcctcaccctggtttgtgaaagtgcc 60976547
Query: 308 ccaggaccgatcaccatggacctcacggg 336
|||||||||||||||||||||||||||||
Sbjct: 60976548 ccaggaccgatcaccatggacctcacggg 60976576
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 335 ggggatctggaagccctcaaaaaagaaacttttgtgctgaaggagggggtcgaatataga 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60979458 ggggatctggaagccctcaaaaaagaaacttttgtgctgaaggagggggtcgaatataga 60979517
Query: 395 gtcaaaattcacttcaaagtaa 416
||||||||||||||||||||||
Sbjct: 60979518 gtcaaaattcacttcaaagtaa 60979539
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 413 gtaaacaaggatattgtgtcaggcctgaaatatgttcaacacacctaccggactggagtg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60983982 gtaaacaaggatattgtgtcaggcctgaaatatgttcaacacacctaccggactggagtg 60984041
Query: 473 aaag 476
||||
Sbjct: 60984042 aaag 60984045
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 6 agtgctcagaagtcagccttgagaggcagaagcacccaggacggagacgtgaaccactga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60965730 agtgctcagaagtcagccttgagaggcagaagcacccaggacggagacgtgaaccactga 60965789
Query: 66 at 67
||
Sbjct: 60965790 at 60965791
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,713,810
Number of extensions: 223
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 6
Length of query: 1105
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1084
Effective length of database: 2,808,413,156
Effective search space: 3044319861104
Effective search space used: 3044319861104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)