Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012326
(1472 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014907.1| pyridoxine-5'-phosphate oxidase [Bos taurus]. 464 e-131
>ref|NP_001014907.1| pyridoxine-5'-phosphate oxidase [Bos taurus].
Length = 261
Score = 464 bits (1195), Expect = e-131
Identities = 222/256 (86%), Positives = 233/256 (91%)
Frame = +1
Query: 142 LRGVIVTFGRPAQWPRYARHLCSRGAVMDLGPMRKSYCGEREAFEETQLTSLDPVKQFAA 321
LR VIVTFGRPA+WPR RHLCSRGA MDLGPMRK+Y G+ EAFEET LTSLDPVKQFAA
Sbjct: 5 LRSVIVTFGRPAEWPRCLRHLCSRGAAMDLGPMRKTYRGDPEAFEETHLTSLDPVKQFAA 64
Query: 322 WFEEAVQCPAIGEANAMCLATCTRDGRPSARMVLLKGFGKDGFRFFTNFQSRKGKELDSN 501
WFEEAVQCP I EANAMCLATCTRDG+PSARMVLLKGFGKDGFRFFTNF+SRKGKELDSN
Sbjct: 65 WFEEAVQCPDIMEANAMCLATCTRDGKPSARMVLLKGFGKDGFRFFTNFESRKGKELDSN 124
Query: 502 PFASLVFYWEPLNRQVRLEGPVKKLPEEEAESYFHSRPRSSQIGAVVSHQSSVIPDREYL 681
PFASLVFYWEPL+RQVR+EGPVKKLPEEEAE YFHSRP+SSQIGAVVSHQSSVIPDREYL
Sbjct: 125 PFASLVFYWEPLHRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYL 184
Query: 682 RKKNXXXXXXXXXXXVPRPKYWGGYILYPQVIEFWQGQTNRLHDRIVFRRGPPTGDSPLG 861
RKKN VP+PKYWGGYILYPQV+EFWQGQTNRLHDRIVFRRG TGDSPLG
Sbjct: 185 RKKNKELEQLYQEQEVPKPKYWGGYILYPQVMEFWQGQTNRLHDRIVFRRGLLTGDSPLG 244
Query: 862 PMTHRGEEDWLYERLA 909
PMTHRGEEDW+YERLA
Sbjct: 245 PMTHRGEEDWVYERLA 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,897,001
Number of extensions: 1725809
Number of successful extensions: 6037
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6035
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 384
Effective length of database: 14,174,046
Effective search space: 5442833664
Effective search space used: 5442833664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012326
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012326
(1472 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537661.2| PREDICTED: similar to Pyridoxine-5-phosphate ox... 477 e-134
>ref|XP_537661.2| PREDICTED: similar to Pyridoxine-5-phosphate oxidase
(Pyridoxamine-phosphate oxidase) [Canis familiaris].
Length = 261
Score = 477 bits (1228), Expect = e-134
Identities = 225/260 (86%), Positives = 236/260 (90%)
Frame = +1
Query: 130 MTCGLRGVIVTFGRPAQWPRYARHLCSRGAVMDLGPMRKSYCGEREAFEETQLTSLDPVK 309
MTCGLRGV VTFGRPA WPRY HLC G VMDLGPMRKSY G+REAFEETQLTSLDP+K
Sbjct: 1 MTCGLRGVTVTFGRPAGWPRYLHHLCGGGVVMDLGPMRKSYRGDREAFEETQLTSLDPMK 60
Query: 310 QFAAWFEEAVQCPAIGEANAMCLATCTRDGRPSARMVLLKGFGKDGFRFFTNFQSRKGKE 489
QFA WFEEAVQCP IGEANAMCLATCTRDG+PSARMVLLKGFGKDGFRFFTNF+SRKG+E
Sbjct: 61 QFATWFEEAVQCPDIGEANAMCLATCTRDGKPSARMVLLKGFGKDGFRFFTNFESRKGRE 120
Query: 490 LDSNPFASLVFYWEPLNRQVRLEGPVKKLPEEEAESYFHSRPRSSQIGAVVSHQSSVIPD 669
LDSNPFASLVFYWEPLNRQVR+EG VKKLPEEEAE YFHSRP+SSQIGAVVSHQSSVIP+
Sbjct: 121 LDSNPFASLVFYWEPLNRQVRVEGSVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPN 180
Query: 670 REYLRKKNXXXXXXXXXXXVPRPKYWGGYILYPQVIEFWQGQTNRLHDRIVFRRGPPTGD 849
REYLRKKN VP+PKYWGGYILYPQV+EFWQGQTNRLHDRI+FRRG PTGD
Sbjct: 181 REYLRKKNEELEQLYQEQEVPKPKYWGGYILYPQVMEFWQGQTNRLHDRIIFRRGLPTGD 240
Query: 850 SPLGPMTHRGEEDWLYERLA 909
SPLGPMTHRGEEDWLYERLA
Sbjct: 241 SPLGPMTHRGEEDWLYERLA 260
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,640,078
Number of extensions: 1795941
Number of successful extensions: 6193
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6184
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 383
Effective length of database: 15,307,552
Effective search space: 5862792416
Effective search space used: 5862792416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012326
(1472 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131590.2| PREDICTED: pyridoxine-5'-phosphate oxidase-l... 270 2e-72
>ref|XP_003131590.2| PREDICTED: pyridoxine-5'-phosphate oxidase-like [Sus scrofa].
Length = 150
Score = 270 bits (690), Expect = 2e-72
Identities = 128/139 (92%), Positives = 128/139 (92%)
Frame = +1
Query: 493 DSNPFASLVFYWEPLNRQVRLEGPVKKLPEEEAESYFHSRPRSSQIGAVVSHQSSVIPDR 672
DSNPFASLVFYWEPLNRQVRLEGPVKKLPEEEAESYFHSRPRSSQIGAVVSHQSSVIPDR
Sbjct: 11 DSNPFASLVFYWEPLNRQVRLEGPVKKLPEEEAESYFHSRPRSSQIGAVVSHQSSVIPDR 70
Query: 673 EYLRKKNXXXXXXXXXXXVPRPKYWGGYILYPQVIEFWQGQTNRLHDRIVFRRGPPTGDS 852
EYLRKKN VPRPKYWGGYILYPQVIEFWQGQTNRLHDRIVFRRGPPTGDS
Sbjct: 71 EYLRKKNEELEQLYQEQEVPRPKYWGGYILYPQVIEFWQGQTNRLHDRIVFRRGPPTGDS 130
Query: 853 PLGPMTHRGEEDWLYERLA 909
PLGPMTHRGEEDWLYERLA
Sbjct: 131 PLGPMTHRGEEDWLYERLA 149
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,723,360
Number of extensions: 1116029
Number of successful extensions: 4005
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3999
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 387
Effective length of database: 8,779,541
Effective search space: 3397682367
Effective search space used: 3397682367
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012326
(1472 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598782.1| pyridoxine-5'-phosphate oxidase [Mus musculus]. 459 e-129
>ref|NP_598782.1| pyridoxine-5'-phosphate oxidase [Mus musculus].
Length = 261
Score = 459 bits (1181), Expect = e-129
Identities = 216/260 (83%), Positives = 234/260 (90%)
Frame = +1
Query: 130 MTCGLRGVIVTFGRPAQWPRYARHLCSRGAVMDLGPMRKSYCGEREAFEETQLTSLDPVK 309
MTCGL V VTF RPA+W Y RHLC RGAVMDLGPMRKSY G+REAFEET LTSLDP+K
Sbjct: 1 MTCGLLSVTVTFRRPAKWTGYLRHLCCRGAVMDLGPMRKSYRGDREAFEETHLTSLDPMK 60
Query: 310 QFAAWFEEAVQCPAIGEANAMCLATCTRDGRPSARMVLLKGFGKDGFRFFTNFQSRKGKE 489
QFA+WF+EAVQCP IGEANAMC+ATCTRDG+PSARM+LLKGFGKDGFRFFTN++SRKGKE
Sbjct: 61 QFASWFDEAVQCPDIGEANAMCVATCTRDGKPSARMLLLKGFGKDGFRFFTNYESRKGKE 120
Query: 490 LDSNPFASLVFYWEPLNRQVRLEGPVKKLPEEEAESYFHSRPRSSQIGAVVSHQSSVIPD 669
LDSNPFASLVFYWEPLNRQVR+EGPVKKLPE+EAE+YFHSRP+SSQIGAVVS QSSVIPD
Sbjct: 121 LDSNPFASLVFYWEPLNRQVRVEGPVKKLPEKEAENYFHSRPKSSQIGAVVSRQSSVIPD 180
Query: 670 REYLRKKNXXXXXXXXXXXVPRPKYWGGYILYPQVIEFWQGQTNRLHDRIVFRRGPPTGD 849
REYLRKKN VP+P+YWGGYILYPQV+EFWQGQTNRLHDRIVFRRG TGD
Sbjct: 181 REYLRKKNEELGQLYQDQEVPKPEYWGGYILYPQVMEFWQGQTNRLHDRIVFRRGLATGD 240
Query: 850 SPLGPMTHRGEEDWLYERLA 909
SPLGPMTH GEEDW+YERLA
Sbjct: 241 SPLGPMTHHGEEDWVYERLA 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,488,449
Number of extensions: 1436695
Number of successful extensions: 4713
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4701
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 385
Effective length of database: 12,463,779
Effective search space: 4798554915
Effective search space used: 4798554915
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012326
(1472 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060599.1| pyridoxine-5'-phosphate oxidase [Homo sapiens]. 474 e-133
>ref|NP_060599.1| pyridoxine-5'-phosphate oxidase [Homo sapiens].
Length = 261
Score = 474 bits (1219), Expect = e-133
Identities = 224/260 (86%), Positives = 234/260 (90%)
Frame = +1
Query: 130 MTCGLRGVIVTFGRPAQWPRYARHLCSRGAVMDLGPMRKSYCGEREAFEETQLTSLDPVK 309
MTC LRGV TFGRPA+WP Y HLC R A MDLGPMRKSY G+REAFEET LTSLDPVK
Sbjct: 1 MTCWLRGVTATFGRPAEWPGYLSHLCGRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVK 60
Query: 310 QFAAWFEEAVQCPAIGEANAMCLATCTRDGRPSARMVLLKGFGKDGFRFFTNFQSRKGKE 489
QFAAWFEEAVQCP IGEANAMCLATCTRDG+PSARM+LLKGFGKDGFRFFTNF+SRKGKE
Sbjct: 61 QFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKE 120
Query: 490 LDSNPFASLVFYWEPLNRQVRLEGPVKKLPEEEAESYFHSRPRSSQIGAVVSHQSSVIPD 669
LDSNPFASLVFYWEPLNRQVR+EGPVKKLPEEEAE YFHSRP+SSQIGAVVSHQSSVIPD
Sbjct: 121 LDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPD 180
Query: 670 REYLRKKNXXXXXXXXXXXVPRPKYWGGYILYPQVIEFWQGQTNRLHDRIVFRRGPPTGD 849
REYLRKKN VP+PK WGGY+LYPQV+EFWQGQTNRLHDRIVFRRG PTGD
Sbjct: 181 REYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGD 240
Query: 850 SPLGPMTHRGEEDWLYERLA 909
SPLGPMTHRGEEDWLYERLA
Sbjct: 241 SPLGPMTHRGEEDWLYERLA 260
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,192,725
Number of extensions: 1738932
Number of successful extensions: 5851
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5844
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 383
Effective length of database: 14,770,016
Effective search space: 5656916128
Effective search space used: 5656916128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012326
(1472 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1402 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1402 bits (707), Expect = 0.0
Identities = 724/727 (99%), Gaps = 2/727 (0%)
Strand = Plus / Plus
Query: 746 ggggtggctacatcctgtacccacaggtgatagagttctggcaaggccagaccaaccgcc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23997572 ggggtggctacatcctgtacccacaggtgatagagttctggcaaggccagaccaaccgcc 23997631
Query: 806 tgcacgaccggatcgtctttcgacggggcccaccgacaggagactcccctttggggccca 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23997632 tgcacgaccggatcgtctttcgacggggcccaccgacaggagactcccctttggggccca 23997691
Query: 866 tgacccaccgaggggaggaagactggctctatgagagacttgccccctgactcccaggct 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23997692 tgacccaccgaggggaggaagactggctctatgagagacttgccccctgactcccaggct 23997751
Query: 926 gcgggtgctgactggagctggggcctgtgctaagagagggtgcgggatccggagccaggc 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23997752 gcgggtgctgactggagctggggcctgtgctaagagagggtgcgggatccggagccaggc 23997811
Query: 986 ccctctaaactcaacctctttcctctcccacctcttaccttcggagctcttcagaattca 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23997812 ccctctaaactcaacctctttcctctcccacctcttaccttcggagctcttcagaattca 23997871
Query: 1046 tcctccgagttctctgtagtcagctggtctagtgcagtagaacagtggcatagatgatca 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23997872 tcctccgagttctctgtagtcagctggtctagtgcagtagaacagtggcatagatgatca 23997931
Query: 1106 caaatggaaaataatcccttaattattttcttaccttggctatgatttactagaatagct 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23997932 caaatggaaaataatcccttaattattttcttaccttggctatgatttactagaatagct 23997991
Query: 1166 ccctctaggggtagcatcgggtgtgattcccttttctgatgacagggggtgggcacccag 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23997992 ccctctaggggtagcatcgggtgtgattcccttttctgatgacagggggtgggcacccag 23998051
Query: 1226 caaccttgtgatcttgtgactctcatgtgatagtcatgctggccaaagctgattggtccc 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23998052 caaccttgtgatcttgtgactctcatgtgatagtcatgctggccaaagctgattggtccc 23998111
Query: 1286 agcagaatcacctgagctggtatagccaatcaatttttcttgtctcccatttgaaatgtg 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23998112 agcagaatcacctgagctggtatagccaatcaatttttcttgtctcccatttgaaatgtg 23998171
Query: 1346 aaatggagagaccagagcttgggagtcattgtagcgaagtcaataatggcagccctgaaa 1405
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 23998172 aaatggagagaccagagcttgggagtcattgtagcgaagtcaataatggcag-cctgaaa 23998230
Query: 1406 gcacctgaggctgccgcccttacaattcactgcggttgtcccctggatccctccttttat 1465
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 23998231 gcacctgaggctgctgcccttacaattcactgc-gttgtcccctggatccctccttttat 23998289
Query: 1466 gtccggg 1472
|||||||
Sbjct: 23998290 gtccggg 23998296
Score = 262 bits (132), Expect = 5e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 544 caggtgcgtttggagggccctgtgaagaagctgccagaggaggaggctgagagctatttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23996840 caggtgcgtttggagggccctgtgaagaagctgccagaggaggaggctgagagctatttc 23996899
Query: 604 cactcccgccccaggagcagccagattggggctgtggtcagtcaccagagttctgtgatc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23996900 cactcccgccccaggagcagccagattggggctgtggtcagtcaccagagttctgtgatc 23996959
Query: 664 cctgatcgggag 675
||||||||||||
Sbjct: 23996960 cctgatcgggag 23996971
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 266 aggcatttgaggagactcagctgacatccctggaccccgtgaagcagtttgctgcctggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23993279 aggcatttgaggagactcagctgacatccctggaccccgtgaagcagtttgctgcctggt 23993338
Query: 326 ttgaggaagctgttcagtgtcctgccataggggaagccaatgccatgtgtctggctacct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23993339 ttgaggaagctgttcagtgtcctgccataggggaagccaatgccatgtgtctggctacct 23993398
Query: 386 gtaccag 392
|||||||
Sbjct: 23993399 gtaccag 23993405
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 674 agtatctgagaaagaaaaatgaagaactggagcagctctaccaggagcaagaggtgccga 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23997292 agtatctgagaaagaaaaatgaagaactggagcagctctaccaggagcaagaggtgccga 23997351
Query: 734 ggccaaaatactgg 747
||||||||||||||
Sbjct: 23997352 ggccaaaatactgg 23997365
Score = 115 bits (58), Expect = 7e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 492 ggactctaatcccttcgcctcccttgtcttctactgggagcccctcaaccgtcaggtg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23996549 ggactctaatcccttcgcctcccttgtcttctactgggagcccctcaaccgtcaggtg 23996606
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,768,426
Number of extensions: 364
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 5
Length of query: 1472
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1451
Effective length of database: 2,808,413,156
Effective search space: 4075007489356
Effective search space used: 4075007489356
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)