Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012339
(1098 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070466.1| 60S ribosomal protein L13a [Bos taurus]. 370 e-102
>ref|NP_001070466.1| 60S ribosomal protein L13a [Bos taurus].
Length = 203
Score = 370 bits (950), Expect = e-102
Identities = 187/204 (91%), Positives = 190/204 (93%)
Frame = +1
Query: 28 MAEGQQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR 207
MAEGQ VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR
Sbjct: 1 MAEGQ-VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR 59
Query: 208 KRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMV 387
KRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAAL+RLKVFDGIPPPYDKKKRMV
Sbjct: 60 KRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMV 119
Query: 388 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYXXXXXXXXXXX 567
VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRK 179
Query: 568 XAEKNVEKKIDRFTEVLKTHGFLV 639
AEKN+EKKI +FTEVLKTHGFLV
Sbjct: 180 QAEKNIEKKIGKFTEVLKTHGFLV 203
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,029,687
Number of extensions: 1330376
Number of successful extensions: 5663
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5600
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 262
Effective length of database: 14,240,222
Effective search space: 3730938164
Effective search space used: 3730938164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012339
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012339
(1098 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533620.2| PREDICTED: similar to ribosomal protein L13a [C... 170 3e-42
>ref|XP_533620.2| PREDICTED: similar to ribosomal protein L13a [Canis familiaris].
Length = 162
Score = 170 bits (430), Expect = 3e-42
Identities = 86/106 (81%), Positives = 90/106 (84%)
Frame = +1
Query: 322 ALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLE 501
+LD LKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLG LAHEVGWKYQAVTATLE
Sbjct: 57 SLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGCLAHEVGWKYQAVTATLE 116
Query: 502 EKRKEKAKIHYXXXXXXXXXXXXAEKNVEKKIDRFTEVLKTHGFLV 639
EKRK+KAKIHY AEKNVEKKID++TEVLKT G LV
Sbjct: 117 EKRKKKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTRGLLV 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,807,559
Number of extensions: 1365198
Number of successful extensions: 5889
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5851
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 262
Effective length of database: 15,407,560
Effective search space: 4036780720
Effective search space used: 4036780720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012339
(1098 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127353.1| PREDICTED: 60S ribosomal protein L13a [Sus s... 376 e-104
Alignment gi|XP_003362215.1| PREDICTED: 60S ribosomal protein L13a-like, ... 242 3e-64
>ref|XP_003127353.1| PREDICTED: 60S ribosomal protein L13a [Sus scrofa].
Length = 203
Score = 376 bits (965), Expect = e-104
Identities = 191/204 (93%), Positives = 191/204 (93%)
Frame = +1
Query: 28 MAEGQQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR 207
MAEGQ VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR
Sbjct: 1 MAEGQ-VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR 59
Query: 208 KRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMV 387
KRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMV
Sbjct: 60 KRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMV 119
Query: 388 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYXXXXXXXXXXX 567
VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRK 179
Query: 568 XAEKNVEKKIDRFTEVLKTHGFLV 639
AEKNVEKKIDRFTEVLKTHGFLV
Sbjct: 180 QAEKNVEKKIDRFTEVLKTHGFLV 203
>ref|XP_003362215.1| PREDICTED: 60S ribosomal protein L13a-like, partial [Sus scrofa].
Length = 155
Score = 242 bits (617), Expect = 3e-64
Identities = 139/203 (68%), Positives = 142/203 (69%)
Frame = +1
Query: 28 MAEGQQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR 207
MAEGQ VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR
Sbjct: 1 MAEGQ-VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR 59
Query: 208 KRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMV 387
KRMNTNPSRGPYHFRAPSRIFWRT KKRMV
Sbjct: 60 KRMNTNPSRGPYHFRAPSRIFWRT-----------------------XXXXXXXXKKRMV 96
Query: 388 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYXXXXXXXXXXX 567
VPAALKVVR P+ +FAYLGRLAHEVGWKYQA RK+
Sbjct: 97 VPAALKVVRXXPSPQFAYLGRLAHEVGWKYQA------RLRKQ----------------- 133
Query: 568 XAEKNVEKKIDRFTEVLKTHGFL 636
AEKNVEKKIDRFTEVLKTHGFL
Sbjct: 134 -AEKNVEKKIDRFTEVLKTHGFL 155
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,501,289
Number of extensions: 865043
Number of successful extensions: 3873
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3840
Number of HSP's successfully gapped: 2
Length of query: 366
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,854,232
Effective search space: 2355225712
Effective search space used: 2355225712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012339
(1098 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033464.2| 60S ribosomal protein L13a [Mus musculus]. 361 e-100
Alignment gi|XP_919283.3| PREDICTED: 60S ribosomal protein L13a-like [Mus... 275 5e-74
>ref|NP_033464.2| 60S ribosomal protein L13a [Mus musculus].
Length = 203
Score = 361 bits (927), Expect = e-100
Identities = 184/204 (90%), Positives = 188/204 (92%)
Frame = +1
Query: 28 MAEGQQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR 207
MAEGQ VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR
Sbjct: 1 MAEGQ-VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLR 59
Query: 208 KRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMV 387
KRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAAL+RLKV DGIPPPYDKKKRMV
Sbjct: 60 KRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMV 119
Query: 388 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYXXXXXXXXXXX 567
VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAK+HY
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRK 179
Query: 568 XAEKNVEKKIDRFTEVLKTHGFLV 639
AEKNVEKKI +FTEVLKT+G LV
Sbjct: 180 QAEKNVEKKICKFTEVLKTNGLLV 203
>ref|XP_919283.3| PREDICTED: 60S ribosomal protein L13a-like [Mus musculus].
Length = 174
Score = 275 bits (703), Expect = 5e-74
Identities = 136/162 (83%), Positives = 143/162 (88%)
Frame = +1
Query: 151 INISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALD 330
INISGNFYRNKL+YLAFL+K+MNTNPSRGPYHFRAPSRIFWRTVRGMLP KTKRGQAAL+
Sbjct: 12 INISGNFYRNKLRYLAFLQKQMNTNPSRGPYHFRAPSRIFWRTVRGMLPQKTKRGQAALE 71
Query: 331 RLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 510
RLKV DG PPPYDKKKRMVVPAALKVVRLKPTR FAYLGRLAHEV WKYQAVTATLEEKR
Sbjct: 72 RLKVLDGTPPPYDKKKRMVVPAALKVVRLKPTRTFAYLGRLAHEVWWKYQAVTATLEEKR 131
Query: 511 KEKAKIHYXXXXXXXXXXXXAEKNVEKKIDRFTEVLKTHGFL 636
KEKAK+HY AEKNVEKKI +FTEVLKT+G L
Sbjct: 132 KEKAKMHYWKKKQILRLRKQAEKNVEKKICKFTEVLKTNGLL 173
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,630,334
Number of extensions: 1093854
Number of successful extensions: 4475
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4458
Number of HSP's successfully gapped: 2
Length of query: 366
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 263
Effective length of database: 12,523,851
Effective search space: 3293772813
Effective search space used: 3293772813
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012339
(1098 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036555.1| 60S ribosomal protein L13a [Homo sapiens]. 368 e-102
>ref|NP_036555.1| 60S ribosomal protein L13a [Homo sapiens].
Length = 203
Score = 368 bits (945), Expect = e-102
Identities = 184/199 (92%), Positives = 186/199 (93%)
Frame = +1
Query: 43 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 222
QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 223 NPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAAL 402
NPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAAL
Sbjct: 65 NPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAAL 124
Query: 403 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYXXXXXXXXXXXXAEKN 582
KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY AEKN
Sbjct: 125 KVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKN 184
Query: 583 VEKKIDRFTEVLKTHGFLV 639
VEKKID++TEVLKTHG LV
Sbjct: 185 VEKKIDKYTEVLKTHGLLV 203
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,729,522
Number of extensions: 1324844
Number of successful extensions: 5618
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5595
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 262
Effective length of database: 14,868,908
Effective search space: 3895653896
Effective search space used: 3895653896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012339
(1098 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1061 0.0
Sscrofa_Chr06 944 0.0
gb|GL896454.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 618 e-174
Sscrofa_Chr13 515 e-143
gb|GL895177.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 414 e-113
Sscrofa_Chr02 359 2e-96
Sscrofa_Chr03 347 8e-93
Sscrofa_Chr11 143 2e-31
Sscrofa_Chr01 64 2e-07
>Sscrofa_Chr12
|| Length = 63588571
Score = 1061 bits (535), Expect = 0.0
Identities = 846/956 (88%), Gaps = 25/956 (2%)
Strand = Plus / Minus
Query: 125 aggtggtggttgtgcgctgtgagggcatcaacatttctggcaatttttacagaaacaaac 184
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17403999 aggtggtggttgcgtgctgtgagggcatcaacatttctggcaatttttacagaaacaaac 17403940
Query: 185 tgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctacc 244
| ||||||||||||||| |||||||||| ||||| |||||||||| ||||||||||
Sbjct: 17403939 taaagtacctggccttcttccgcaagcggatgaacaccaacccgtgccgaggcccc---- 17403884
Query: 245 acttccgagcccccagccgcatcttctggcggacggtgcgaggcatgctgccccacaaga 304
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17403883 --------------agccgcatcttctggcggacggtgcgaggcatgctgccccacaaga 17403838
Query: 305 ccaagcgagggcaggccgccctggaccgtctcaaggtgttcgatgggatcccgccaccct 364
|||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 17403837 ccaagcgaggtcaggccgccctggaccgcctcaaggtgtttgatgggatcccaccaccct 17403778
Query: 365 atgacaagaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtctgaagccta 424
|||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 17403777 atgacaagaaaaagcggatggtggttcctgccaccctcaaggtggtgtgtctgaagccta 17403718
Query: 425 cgcggaagttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcag 484
|||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct: 17403717 cgcggaagtttgcctacctggggtgcctcgctcatcaggttggctggaagtaccaggcag 17403658
Query: 485 ttacagccaccctggaggagaagaggaaggagaaggccaagatccattaccgcaagaaga 544
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 17403657 ttacagccaccct---ggagaagaggaaggagaaggccaagatccattaccaaaagaaga 17403601
Query: 545 agcagctcatgaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggt 604
| |||||||||||||| ||||| |||| ||||||||| ||||||||||||| |||| |
Sbjct: 17403600 aacagctcatgaggctatggaagtaggccgaaaagaacatagagaagaagattgacaaat 17403541
Query: 605 tcacggaggtcctcaagactcatggattcctagtctgagcacaataaaattgactgttta 664
|||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 17403540 tcacagaggtccttaaaacccatggattcctagtctgagcacaataaaattgactgttta 17403481
Query: 665 ttcttcnnnnnnnnnnnnnnctgcccttcctccatcgccaccctaggatgtgggggacct 724
|||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17403480 ttcttcatgtgtcacctggcctgcccttcctccattgccaccctaggatgtgggggacct 17403421
Query: 725 ccaggggccacgggcagcctggagcttaggagcctgggtgtagccaaggggccttgttta 784
||||| |||||||||||||| | |||||||||| ||||| |||| |||||||||||| |
Sbjct: 17403420 ccaggagccacgggcagcctagggcttaggagcttgggtatagcagaggggccttgttca 17403361
Query: 785 ctgctggtcgagaaaggcctttctagaagtacagggccgagggctgtgcaggtgcagtgt 844
||||| || |||||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct: 17403360 ctgctcgtggagaaaggcctttctaaaagcacagggccaagggctgtgcaggtgcag--- 17403304
Query: 845 tgttggcaggagtgaaccaagaggaagggcctccac-ttgtgcccagggcatctgttaaa 903
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||
Sbjct: 17403303 tgttggcaggagtgagccaagaggaagggcctccactttgtgcgcagggcatctgctaaa 17403244
Query: 904 ccttccggcgggcggataccatactctgcagctgttagggggtgagaggctgcctggcca 963
| | || ||||| | |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 17403243 cttccccgcgggggaatactatactctgcagctgttatggggtgagaggctgcctggctg 17403184
Query: 964 ggcagcgtgagtcgggggctcttgcgcaaaggtgctgtggaaacaggtgcagccaaaggg 1023
|||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||| |||
Sbjct: 17403183 ggcagcatgagtcgggggctcttctgcaaaagtgctgtggaaacaggtgcagtcaagggg 17403124
Query: 1024 tcacagggcatctcccctatacattgtgatcctgaactaataaattatttttgaag 1079
|||||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||
Sbjct: 17403123 tcacagggcatctcccctatactttgtgatccagaactgataaatgatttttgaag 17403068
Score = 309 bits (156), Expect = 2e-81
Identities = 443/538 (82%), Gaps = 13/538 (2%)
Strand = Plus / Minus
Query: 8 ttcccaggcagctgccgaagatggcggaggggcagcaggtgctggtgctcgatggccgag 67
||||||||||| |||| ||||||| ||||||||||||||||| ||||| | |||| ||
Sbjct: 5709454 ttcccaggcaggtgccaaagatgggagaggggcagcaggtgcttctgctccacggccaag 5709395
Query: 68 gccatctcctgggccgcctggcggccattgtggccaagcaggtacttctgggccggaagg 127
|||| ||||||| | ||||| |||||| || ||| ||||||| |||||||||| |||||
Sbjct: 5709394 gccacctcctggactacctggaggccatggttgccgagcaggtgcttctgggccagaagg 5709335
Query: 128 tggtggttgtgcgctgtgagggcatcaacatttctggcaatttttacagaaacaaactga 187
|||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 5709334 gggtggttgtgtgctatgagggcatcaacatttctggcaatttctacagaaacaaacgga 5709275
Query: 188 agtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctaccact 247
||||||| | ||||||||||||||| || |||||||| ||||| ||| || ||||||
Sbjct: 5709274 agtacctagtcttcctccgcaagcgggtgcgcaccaacccatcccgcggctccaaccact 5709215
Query: 248 tccgagcccccagccgcatcttctggcggacggtgcgaggcatgctgccccacaagacca 307
|| ||||||| |||| |||| |||| || || || ||| |||||||||||||||||
Sbjct: 5709214 tctgagccccaagccacatccgctggtgggtggcgcagggcttgctgccccacaagaccc 5709155
Query: 308 agcgagggcaggccgccctgg-accgtctcaaggtgttcgatgggatcccgccaccctat 366
||| || |||||| ||| || ||| || | |||||| | ||| || ||| ||||||
Sbjct: 5709154 agcctggccaggccaccccggaaccctcggatggtgttttagggggccctgccgccctat 5709095
Query: 367 gacaagaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacg 426
|||||||||||| | || |||| |||||||||||||| |||||| |||||||||||
Sbjct: 5709094 gacaagaaaaaggggatcgtgggtcctgccgccctcaaaatggtgcacctgaagcctaca 5709035
Query: 427 cggaagttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagtt 486
||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 5709034 gggaagtttgccta---------cctggctcatgaggttgcctggaagtaccaggcagta 5708984
Query: 487 acagccaccctggaggagaagaggaaggagaaggccaagatccattaccgcaagaaga 544
|| ||||||| |||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 5708983 accaccaccct---ggagaagaggaaggagaacgccaagatccattactgcaagaaga 5708929
Score = 309 bits (156), Expect = 2e-81
Identities = 443/538 (82%), Gaps = 13/538 (2%)
Strand = Plus / Plus
Query: 8 ttcccaggcagctgccgaagatggcggaggggcagcaggtgctggtgctcgatggccgag 67
||||||||||| |||| ||||||| ||||||||||||||||| ||||| | |||| ||
Sbjct: 5953054 ttcccaggcaggtgccaaagatgggagaggggcagcaggtgcttctgctccacggccaag 5953113
Query: 68 gccatctcctgggccgcctggcggccattgtggccaagcaggtacttctgggccggaagg 127
|||| ||||||| | ||||| |||||| || ||| ||||||| |||||||||| |||||
Sbjct: 5953114 gccacctcctggactacctggaggccatggttgccgagcaggtgcttctgggccagaagg 5953173
Query: 128 tggtggttgtgcgctgtgagggcatcaacatttctggcaatttttacagaaacaaactga 187
|||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 5953174 gggtggttgtgtgctatgagggcatcaacatttctggcaatttctacagaaacaaacgga 5953233
Query: 188 agtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctaccact 247
||||||| | ||||||||||||||| || |||||||| ||||| ||| || ||||||
Sbjct: 5953234 agtacctagtcttcctccgcaagcgggtgcgcaccaacccatcccgcggctccaaccact 5953293
Query: 248 tccgagcccccagccgcatcttctggcggacggtgcgaggcatgctgccccacaagacca 307
|| ||||||| |||| |||| |||| || || || ||| |||||||||||||||||
Sbjct: 5953294 tctgagccccaagccacatccgctggtgggtggcgcagggcttgctgccccacaagaccc 5953353
Query: 308 agcgagggcaggccgccctgg-accgtctcaaggtgttcgatgggatcccgccaccctat 366
||| || |||||| ||| || ||| || | |||||| | ||| || ||| ||||||
Sbjct: 5953354 agcctggccaggccaccccggaaccctcggatggtgttttagggggccctgccgccctat 5953413
Query: 367 gacaagaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacg 426
|||||||||||| | || |||| |||||||||||||| |||||| |||||||||||
Sbjct: 5953414 gacaagaaaaaggggatcgtgggtcctgccgccctcaaaatggtgcacctgaagcctaca 5953473
Query: 427 cggaagttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagtt 486
||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 5953474 gggaagtttgccta---------cctggctcatgaggttgcctggaagtaccaggcagta 5953524
Query: 487 acagccaccctggaggagaagaggaaggagaaggccaagatccattaccgcaagaaga 544
|| ||||||| |||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 5953525 accaccaccct---ggagaagaggaaggagaacgccaagatccattactgcaagaaga 5953579
Score = 67.9 bits (34), Expect = 1e-08
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 2 cttgctttcccaggcagctgccgaagatggcggagggg 39
|||||||||||||||||||||||||||||| |||||||
Sbjct: 17404044 cttgctttcccaggcagctgccgaagatggtggagggg 17404007
>Sscrofa_Chr06
|| Length = 157765593
Score = 944 bits (476), Expect = 0.0
Identities = 510/526 (96%)
Strand = Plus / Plus
Query: 555 gaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggt 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50297196 gaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggt 50297255
Query: 615 cctcaagactcatggattcctagtctgagcacaataaaattgactgtttattcttcnnnn 674
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50297256 cctcaagacccatggattcctagtctgagcacaataaaattgactgtttattcttcatgc 50297315
Query: 675 nnnnnnnnnnctgcccttcctccatcgccaccctaggatgtgggggacctccaggggcca 734
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50297316 gtcgcctggcctgcccttcctccatcgccaccctaggatgtgggggacctccaggggcca 50297375
Query: 735 cgggcagcctggagcttaggagcctgggtgtagccaaggggccttgtttactgctggtcg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50297376 cgggcagcctggagcttaggagcctgggtgtagccaaggggccttgtttactgctggtcg 50297435
Query: 795 agaaaggcctttctagaagtacagggccgagggctgtgcaggtgcagtgttgttggcagg 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50297436 agaaaggcctttctagaagtacagggccgagggctgtgcaggtgcagtgttgttggcagg 50297495
Query: 855 agtgaaccaagaggaagggcctccacttgtgcccagggcatctgttaaaccttccggcgg 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50297496 agtgaaccaagaggaagggcctccacttgtgcccagggcatctgttaaaccttccggcgg 50297555
Query: 915 gcggataccatactctgcagctgttagggggtgagaggctgcctggccaggcagcgtgag 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50297556 gcggataccatactctgcagctgttagggggtgagaggctgcctggccaggcagcgtgag 50297615
Query: 975 tcgggggctcttgcgcaaaggtgctgtggaaacaggtgcagccaaagggtcacagggcat 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50297616 tcgggggctcttgcgcaaaggtgctgtggaaacaggtgcagccaaagggtcacagggcat 50297675
Query: 1035 ctcccctatacattgtgatcctgaactaataaattatttttgaagg 1080
||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 50297676 ctcccctatacattgtgatcccgaactaataaattatttttgaagg 50297721
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 431 agttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagttacag 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296878 agttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagttacag 50296937
Query: 491 ccaccctggaggagaagaggaaggagaaggccaagatccattaccgcaagaagaagcagc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296938 ccaccctggaggagaagaggaaggagaaggccaagatccattaccgcaagaagaagcagc 50296997
Query: 551 tcatg 555
|||||
Sbjct: 50296998 tcatg 50297002
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 185 tgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50295990 tgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctacc 50296049
Query: 245 acttccgagcccccagccgcatcttctggcggacggtgcgagg 287
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296050 acttccgagcccccagccgcatcttctggcggacggtgcgagg 50296092
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 285 aggcatgctgccccacaagaccaagcgagggcaggccgccctggaccgtctcaaggtgtt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296288 aggcatgctgccccacaagaccaagcgagggcaggccgccctggaccgtctcaaggtgtt 50296347
Query: 345 cgatgggatcccgccaccctatgacaag 372
||||||||||||||||||||||||||||
Sbjct: 50296348 cgatgggatcccgccaccctatgacaag 50296375
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 40 cagcaggtgctggtgctcgatggccgaggccatctcctgggccgcctggcggccattgtg 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50295298 cagcaggtgctggtgctcgatggccgaggccatctcctgggccgcctggcggccattgtg 50295357
Query: 100 gccaagcaggtacttctggg 119
||||||||||||||||||||
Sbjct: 50295358 gccaagcaggtacttctggg 50295377
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 118 ggccggaaggtggtggttgtgcgctgtgagggcatcaacatttctggcaatttttacaga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50295739 ggccggaaggtggtggttgtgcgctgtgagggcatcaacatttctggcaatttttacaga 50295798
Query: 178 aacaaac 184
|||||||
Sbjct: 50295799 aacaaac 50295805
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 371 agaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcgga 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296557 agaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcgga 50296616
Query: 431 ag 432
||
Sbjct: 50296617 ag 50296618
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 6 ctttcccaggcagctgccgaagatggcggaggggcag 42
|||||||||||||||||||||||||||||||||||||
Sbjct: 50293765 ctttcccaggcagctgccgaagatggcggaggggcag 50293801
>gb|GL896454.1| Sus scrofa unplaced genomic scaffold chrU_scaffold793
Length = 14988
Score = 618 bits (312), Expect = e-174
Identities = 343/358 (95%)
Strand = Plus / Plus
Query: 555 gaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggt 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13253 gaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggt 13312
Query: 615 cctcaagactcatggattcctagtctgagcacaataaaattgactgtttattcttcnnnn 674
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13313 cctcaagactcatggattcctagtcagagcacaataaaattgactgtttattcttcatgc 13372
Query: 675 nnnnnnnnnnctgcccttcctccatcgccaccctaggatgtgggggacctccaggggcca 734
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13373 gtcgcctggcctgcccttcctccatcgccaccctaggatgtgggggacctccaggggcca 13432
Query: 735 cgggcagcctggagcttaggagcctgggtgtagccaaggggccttgtttactgctggtcg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13433 cgggcagcctggagcttaggagcctgggtgtagccaaggggccttgtttactgctggtcg 13492
Query: 795 agaaaggcctttctagaagtacagggccgagggctgtgcaggtgcagtgttgttggcagg 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13493 agaaaggcctttctagaagtacagggccgagggctgtgcaggtgcagtgttgttggcagg 13552
Query: 855 agtgaaccaagaggaagggcctccacttgtgcccagggcatctgttaaaccttccggc 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13553 agtgaaccaagaggaagggcctccacttgtgcccagggcatctgttaaaccttccggc 13610
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 185 tgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11716 tgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctacc 11775
Query: 245 acttccgagcccccagccgcatcttctggcggacg 279
|||||||||||||||||||||||||||||||||||
Sbjct: 11776 acttccgagcccccagccgcatcttctggcggacg 11810
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 40 cagcaggtgctggtgctcgatggccgaggccatctcctgggccgcctggcggccattgtg 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11024 cagcaggtgctggtgctcgatggccgaggccatctcctgggccgcctggcggccattgtg 11083
Query: 100 gccaagcaggtacttctggg 119
||||||||||||||||||||
Sbjct: 11084 gccaagcaggtacttctggg 11103
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 118 ggccggaaggtggtggttgtgcgctgtgagggcatcaacatttctggcaatttttacaga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11465 ggccggaaggtggtggttgtgcgctgtgagggcatcaacatttctggcaatttttacaga 11524
Query: 178 aacaaac 184
|||||||
Sbjct: 11525 aacaaac 11531
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 431 agttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagt 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12885 agttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagt 12939
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 371 agaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtc 415
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416 agaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtc 12460
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 6 ctttcccaggcagctgccgaagatggcggaggggcag 42
|||||||||||||||||||||||||||||||||||||
Sbjct: 9423 ctttcccaggcagctgccgaagatggcggaggggcag 9459
>Sscrofa_Chr13
|| Length = 218635234
Score = 515 bits (260), Expect = e-143
Identities = 557/655 (85%), Gaps = 7/655 (1%)
Strand = Plus / Minus
Query: 19 ctgccgaagatggcggaggggcagcaggtgctggtgctcgatggccgaggcc----atct 74
||||| ||||||| ||| ||||||||||||||||||||| ||||| ||||| ||||
Sbjct: 158258584 ctgccaaagatggtggaagggcagcaggtgctggtgctccatggctgaggctggctatct 158258525
Query: 75 cctgggccgcctggcggccattgtggccaagcaggtacttctgggccggaaggtggtggt 134
||||||| ||||||| ||||| | ||||||||||| ||||||||| |||||||||| ||
Sbjct: 158258524 cctgggctgcctggcagccatcatagccaagcaggtgcttctgggctggaaggtggtagt 158258465
Query: 135 tgtgcgctgtgagggcatcaacatttctggcaatttttacagaaacaaactgaagtacct 194
||||| |||||||||||||| ||||||||||||||| | || ||||||||| ||||||||
Sbjct: 158258464 tgtgccctgtgagggcatcagcatttctggcaatttctgcaaaaacaaacttaagtacct 158258405
Query: 195 ggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctaccacttccgagc 254
||||||||| | |||| | | | ||||||| |||| ||||||| ||| ||||| ||
Sbjct: 158258404 ggccttccttcacaagagggtcgacaccaacctgtccggaggcccttactgcttcccaga 158258345
Query: 255 ccccagccgcatcttctggcggacggtgcgaggcatgctgccccacaagaccaagcgagg 314
|||||||| |||||||||| ||| |||| |||||||||||| ||||||||||||| |||
Sbjct: 158258344 ccccagccacatcttctggtggatggtgtgaggcatgctgctgcacaagaccaagctagg 158258285
Query: 315 gcaggccgccctggaccgtctcaaggtgttcgatgggatcccgccaccctatgacaagaa 374
|||||||||||||||| |||||||||| |||||||| || ||| ||||||||||||
Sbjct: 158258284 ccaggccgccctggaccacttcaaggtgtttgatgggatgcctccatgctatgacaagaa 158258225
Query: 375 aaagcgcatggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcggaagtt 434
|| || |||||| | ||| ||||||||||||||| |||||||||||| || ||||||
Sbjct: 158258224 aaggcagatggtgtttcctctagccctcaaggtggtgtgtctgaagcctatgcagaagtt 158258165
Query: 435 cgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagttacagccac 494
||||| ||||| ||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct: 158258164 tgcctatctggggtgcctggctcatgaggttggctaggagtaccaggcagtaacagccac 158258105
Query: 495 cctggaggagaagaggaaggagaaggccaagatccattaccgcaagaagaagcagctcat 554
|||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |
Sbjct: 158258104 cctggaggtgaagaggaaggagaaggccaagacccattaccagaagaagaaacagcttgt 158258045
Query: 555 gaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggt 614
|||||| | || |||| | | ||||||| ||| |||||| ||||| |||| ||||
Sbjct: 158258044 gaggctacagacgcagaccggaaagaacatag---ggaagattgacagattcatagagga 158257988
Query: 615 cctcaagactcatggattcctagtctgagcacaataaaattgactgtttattctt 669
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158257987 ccgcaagacccatggattcctagtctgagcacaataaaattgactgtttattctt 158257933
Score = 192 bits (97), Expect = 3e-46
Identities = 190/221 (85%)
Strand = Plus / Plus
Query: 450 cctggctcatgaggttggctggaagtaccaggcagttacagccaccctggaggagaagag 509
|||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||
Sbjct: 95672698 cctggctcatgaggttggctagaagtaccaggaggtaacagccaccctggaagagaagag 95672757
Query: 510 gaaggagaaggccaagatccattaccgcaagaagaagcagctcatgaggctgcggaagca 569
|| ||| ||||||||| |||||||||| | |||| ||||| |||||||||| |||||||
Sbjct: 95672758 gagggaaaaggccaaggtccattaccggatgaagcagcagatcatgaggctatggaagca 95672817
Query: 570 ggcggaaaagaacgtagagaagaagatcgacaggttcacggaggtcctcaagactcatgg 629
||| ||||||||| | |||||||| | || | ||||| ||||| ||||||| ||||
Sbjct: 95672818 ggccgaaaagaacatcgagaagaaaactgataaattcacagaggttctcaagatctatgg 95672877
Query: 630 attcctagtctgagcacaataaaattgactgtttattcttc 670
||||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 95672878 attcctagtctaagcccaataaaattgactatttattcttc 95672918
>gb|GL895177.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3769
Length = 38942
Score = 414 bits (209), Expect = e-113
Identities = 357/405 (88%), Gaps = 1/405 (0%)
Strand = Plus / Minus
Query: 263 gcatcttctggcggacggtgcgaggcatgctgccccacaagaccaagcgagggcaggccg 322
|||||||||||||||||||| ||||||| |||||| ||||||| | | |||| ||||||
Sbjct: 30237 gcatcttctggcggacggtgtgaggcatcctgccc-acaagactaggggaggccaggcca 30179
Query: 323 ccctggaccgtctcaaggtgttcgatgggatcccgccaccctatgacaagaaaaagcgca 382
|||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||| |
Sbjct: 30178 ccctagaccacctcaaggtgtttgatgagatcccgccaccctatgacaagaaaaagcgga 30119
Query: 383 tggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcggaagttcgcctacc 442
|| || | ||||||||||||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 30118 tgatgattcctgccgccctcaaggtggtgcgtctgaaacctatgcggaagtttgcctacc 30059
Query: 443 tgggacgcctggctcatgaggttggctggaagtaccaggcagttacagccaccctggagg 502
|||| |||||||| |||||||||||||||||||||| || |||||| |||||| ||||
Sbjct: 30058 tggggtgcctggcttatgaggttggctggaagtaccatgccattacagtcaccctagagg 29999
Query: 503 agaagaggaaggagaaggccaagatccattaccgcaagaagaagcagctcatgaggctgc 562
| |||| || ||||||||||||| |||||||| | |||||||| |||| |||||| ||
Sbjct: 29998 aaaagatgagggagaaggccaagttccattactggaagaagaaacagcccatgagactat 29939
Query: 563 ggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggtcctcaaga 622
||||| |||| ||||||||| ||||||||||||| |||| |||| |||||||||||||
Sbjct: 29938 ggaaggaggccgaaaagaacatagagaagaagattgacaaattcatagaggtcctcaaga 29879
Query: 623 ctcatggattcctagtctgagcacaataaaattgactgtttattc 667
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29878 cccatggattcctagtctgagcacaataaaattgactgtttattc 29834
Score = 198 bits (100), Expect = 5e-48
Identities = 190/220 (86%)
Strand = Plus / Minus
Query: 7 tttcccaggcagctgccgaagatggcggaggggcagcaggtgctggtgctcgatggccga 66
||||||||| |||||| ||||||| ||||| ||| ||||||||| ||| |||| ||||
Sbjct: 30573 tttcccaggtggctgccaaagatggtggaggagcaacaggtgctgatgcaggatgtccga 30514
Query: 67 ggccatctcctgggccgcctggcggccattgtggccaagcaggtacttctgggccggaag 126
|||||| |||||||| |||||| |||||| | | |||||||||| ||||| |||| ||||
Sbjct: 30513 ggccatttcctgggctgcctggtggccatcgcgcccaagcaggtgcttctaggccagaag 30454
Query: 127 gtggtggttgtgcgctgtgagggcatcaacatttctggcaatttttacagaaacaaactg 186
|| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 30453 gtaatggttgtgcgctgtgagggcatcaacatttctggcaatatctacagaaacaaacca 30394
Query: 187 aagtacctggccttcctccgcaagcgcatgaataccaacc 226
||||| ||||||||||||| |||||| || || |||||||
Sbjct: 30393 aagtatctggccttcctccacaagcggataaacaccaacc 30354
>Sscrofa_Chr02
|| Length = 162569375
Score = 359 bits (181), Expect = 2e-96
Identities = 373/435 (85%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 97 gtggccaagcaggtacttctgggccggaaggtggtggttgtgcgctgtgagggcatcaac 156
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5646368 gtggccaagcaggttcttctgggctggaaggtggtggttgtgcgctgtgagggcatcaac 5646427
Query: 157 atttctggcaatttttacagaaacaaactgaagtacctggccttcctccgcaagcgcatg 216
|||||||||||||| ||||||||||||||||||||| |||||||| |||| |||| ||
Sbjct: 5646428 atttctggcaatttctacagaaacaaactgaagtacgtggccttcttccgaaagcagata 5646487
Query: 217 aataccaacccgtcccgaggcccctaccacttccgagcccccagccgcatcttctggcgg 276
|| |||||||| |||| ||||| | | ||||||||| ||||| |||||||| ||||||
Sbjct: 5646488 aacaccaacccatcccacagccccgatcccttccgagctcccag-cgcatcttttggcgg 5646546
Query: 277 acggtgcgaggcatgctgccccacaagaccaagcgagggcaggccgccctggaccgtctc 336
| |||||||| | |||| ||||||||||||||| | ||||| ||||||||| |||
Sbjct: 5646547 cccatgcgaggcctcctgctccacaagaccaagcggagccaggctgccctggac---ctc 5646603
Query: 337 aaggtgttcgatgggatcccgccaccctatgacaagaaaaagcgcatggtggtgcctgcc 396
|||||||| ||||||| || || ||| |||||||||||||||| |||||||| ||||
Sbjct: 5646604 aaggtgtttgatgggaagccaccgcccaatgacaagaaaaagcggatggtggttcctggt 5646663
Query: 397 gccctcaaggtggtgcgtctgaagcctacgcggaagttcgcctacctgggacgcctggct 456
|||||||||||||||| |||||| |||||| | ||||| |||| || | |||||||
Sbjct: 5646664 gccctcaaggtggtgcctctgaaacctacgtgaaagtttacctagttgcggtgcctggcc 5646723
Query: 457 catgaggttggctggaagtaccaggcagttacagccaccctggaggagaagaggaaggag 516
|||||||||||||| ||||||||| ||| ||||||||| |||||||||| ||||| |||
Sbjct: 5646724 catgaggttggctgttagtaccaggaagtaacagccaccatggaggagaacaggaaagag 5646783
Query: 517 aaggccaagatccat 531
|||||||||||||||
Sbjct: 5646784 aaggccaagatccat 5646798
Score = 71.9 bits (36), Expect = 7e-10
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 6 ctttcccaggcagctgccgaagatggcggaggggcagcaggtgctggtgctc 57
||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 5646315 ctttcccaggctgctgctgaagatggcggaggggcggcaggtgctggggctc 5646366
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 141 ctgtgagggcatcaacatttctggcaatttttacagaaacaa 182
|||||||||||||| | ||||||||||||| |||||||||||
Sbjct: 105611142 ctgtgagggcatcagcttttctggcaatttctacagaaacaa 105611183
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 141 ctgtgagggcatcaacatttctggcaatttttacagaaacaa 182
|||||||||||||| | ||||||||||||| |||||||||||
Sbjct: 105706520 ctgtgagggcatcagcttttctggcaatttctacagaaacaa 105706561
>Sscrofa_Chr03
|| Length = 144787322
Score = 347 bits (175), Expect = 8e-93
Identities = 545/664 (82%), Gaps = 22/664 (3%)
Strand = Plus / Minus
Query: 11 ccaggcagctgccgaagatggcggaggggcagcaggtgctggtgctcgatggccgaggcc 70
|||||||||||| ||||||| | |||||| |||||||||| ||||| |||||| |||||
Sbjct: 117349566 ccaggcagctgctgaagatgtcagaggggaagcaggtgctactgctcaatggccaaggcc 117349507
Query: 71 atctcctgggccgcctggcggccattgtggccaagcaggtacttctgggccggaaggtgg 130
|||||||||||| |||| ||||| ||||||||||||| ||| |||| | |||||| |
Sbjct: 117349506 atctcctgggccatctggaagccatcatggccaagcaggtgcttttgggtcagaaggtag 117349447
Query: 131 tggttgtgcgctgtgagggcatcaacatttctggcaatttttacagaaacaaa-ctgaag 189
||||||||| |||||| | |||||||||||| |||||||| || ||||| ||| |||||
Sbjct: 117349446 tggttgtgcactgtgaagacatcaacatttccggcaatttctaaagaaaaaaacctgaaa 117349387
Query: 190 tacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctaccacttc 249
|||| | |||| || ||||| | ||||| |||||||| ||||| ||| ||||||||||
Sbjct: 117349386 taccaaggcttcttctgcaagtggatgaacaccaacccatcccgcagcctctaccacttc 117349327
Query: 250 cgagcccccagccgcatcttctggcggacggtgcgaggcatgctgccccacaagaccaag 309
| |||||||||||||||||||||| |||| |||| |||||||| | |||||||||||||
Sbjct: 117349326 caagcccccagccgcatcttctggtggacagtgcaaggcatgcaggcccacaagaccaa- 117349268
Query: 310 cgagggcaggccgccctggaccgtctcaaggtgttcgatgggatcccgccaccctatgac 369
| ||| |||||| ||||||||| ||||||||||| ||||| ||| | || || |||
Sbjct: 117349267 caaggccaggccaccctggaccacctcaaggtgtttgatggaatcacacctccttat--- 117349211
Query: 370 aagaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcgg 429
|||| |||| || |||||||||||||||||| | | |||||||||||| | |
Sbjct: 117349210 -----aaag-gcatatgggatcctgccgccctcaaggtgatacatctgaagcctacacag 117349157
Query: 430 aagttcgcctacct-gggacgcctggctcatgaggttggctggaagtaccaggcagttac 488
|||| |||||||| ||| |||||||| |||||||| |||||||||||||| || ||
Sbjct: 117349156 aagtctgcctacctgggggggcctggcttgtgaggttgactggaagtaccaggtggtaac 117349097
Query: 489 agccaccctggaggagaagaggaaggagaaggccaagatccattaccgcaagaagaagca 548
||||||||||| |||||||| ||||||||||||||||||||||| || ||||| || ||
Sbjct: 117349096 agccaccctgggggagaagaagaaggagaaggccaagatccattcccagaagaaaaaaca 117349037
Query: 549 gctcatgaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcac 608
|||||||||||| | ||||||||| |||||||| |||||||||||| |||||
Sbjct: 117349036 gctcatgaggctacagaagcaggccaaaaagaacatagagaagaaga-------attcac 117348984
Query: 609 ggaggtcctcaagactcatggattcctagtc---tgagcacaataaaattgactgtttat 665
||||| |||||||| |||||||||| |||| | ||| |||| ||||||||||||||
Sbjct: 117348983 agaggttctcaagacccatggattccaagtctaataagcctaatagaattgactgtttat 117348924
Query: 666 tctt 669
||||
Sbjct: 117348923 tctt 117348920
>Sscrofa_Chr11
|| Length = 87690581
Score = 143 bits (72), Expect = 2e-31
Identities = 169/200 (84%), Gaps = 1/200 (0%)
Strand = Plus / Minus
Query: 383 tggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcggaagttcgcctacc 442
||||||| ||||| ||| ||| |||||| | ||| ||||||| |||||||| |||||
Sbjct: 87330747 tggtggttcctgctgccttcagggtggtttgcttgacgcctacg-ggaagttcacctact 87330689
Query: 443 tgggacgcctggctcatgaggttggctggaagtaccaggcagttacagccaccctggagg 502
| | ||||||||| |||||||||||||||| ||||||| || ||||||||||||||||
Sbjct: 87330688 tagagcgcctggcttgtgaggttggctggaagcaccaggcggtaacagccaccctggagg 87330629
Query: 503 agaagaggaaggagaaggccaagatccattaccgcaagaagaagcagctcatgaggctgc 562
|||||||||||||||||||||||||| |||| | ||||| |||| |||| ||||| |
Sbjct: 87330628 agaagaggaaggagaaggccaagatctgttactggaagaacaagccactcaagaggccac 87330569
Query: 563 ggaagcaggcggaaaagaac 582
|||||||||| |||||||||
Sbjct: 87330568 ggaagcaggctgaaaagaac 87330549
>Sscrofa_Chr01
|| Length = 315321322
Score = 63.9 bits (32), Expect = 2e-07
Identities = 84/100 (84%), Gaps = 1/100 (1%)
Strand = Plus / Minus
Query: 92 ccattgtggccaagcaggtacttctgggccggaaggtggtggttgtgcgctgtgagggca 151
|||| |||| ||||||| |||| |||||| ||| ||||| ||| ||| |||||||||||
Sbjct: 283757678 ccatcgtggtcaagcagatactgctgggctgga-ggtggcggtcatgcactgtgagggca 283757620
Query: 152 tcaacatttctggcaatttttacagaaacaaactgaagta 191
|||| |||||||||| ||| ||| ||||||| |||||||
Sbjct: 283757619 tcaatatttctggcagtttctacggaaacaaggtgaagta 283757580
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,363,847
Number of extensions: 335
Number of successful extensions: 335
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 42
Length of query: 1098
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1077
Effective length of database: 2,808,413,156
Effective search space: 3024660969012
Effective search space used: 3024660969012
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)