Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012340
(1268 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533620.2| PREDICTED: similar to ribosomal protein L13a [C... 170 3e-42
>ref|XP_533620.2| PREDICTED: similar to ribosomal protein L13a [Canis familiaris].
Length = 162
Score = 170 bits (430), Expect = 3e-42
Identities = 86/106 (81%), Positives = 90/106 (84%)
Frame = +3
Query: 261 ALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLE 440
+LD LKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLG LAHEVGWKYQAVTATLE
Sbjct: 57 SLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGCLAHEVGWKYQAVTATLE 116
Query: 441 EKRKEKAKIHYXXXXXXXXXXXXAEKNVEKKIDRFTEVLKTHGFLV 578
EKRK+KAKIHY AEKNVEKKID++TEVLKT G LV
Sbjct: 117 EKRKKKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTRGLLV 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,528,346
Number of extensions: 1196549
Number of successful extensions: 4339
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4332
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 317
Effective length of database: 15,374,224
Effective search space: 4873629008
Effective search space used: 4873629008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012340
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012340
(1268 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070466.1| 60S ribosomal protein L13a [Bos taurus]. 281 5e-85
>ref|NP_001070466.1| 60S ribosomal protein L13a [Bos taurus].
Length = 203
Score = 281 bits (720), Expect(2) = 5e-85
Identities = 138/154 (89%), Positives = 141/154 (91%)
Frame = +3
Query: 117 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP 296
NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAAL+RLKVFDGIP
Sbjct: 50 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIP 109
Query: 297 PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYX 476
PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY
Sbjct: 110 PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYR 169
Query: 477 XXXXXXXXXXXAEKNVEKKIDRFTEVLKTHGFLV 578
AEKN+EKKI +FTEVLKTHGFLV
Sbjct: 170 KKKQLMRLRKQAEKNIEKKIGKFTEVLKTHGFLV 203
Score = 52.8 bits (125), Expect(2) = 5e-85
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +1
Query: 25 MAEGQQVLVLDGRGHLLGRLAAIVAKQVLL 114
MAEGQ VLVLDGRGHLLGRLAAIVAKQVLL
Sbjct: 1 MAEGQ-VLVLDGRGHLLGRLAAIVAKQVLL 29
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,869,689
Number of extensions: 1243590
Number of successful extensions: 4065
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4053
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,207,134
Effective search space: 4503661478
Effective search space used: 4503661478
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012340
(1268 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127353.1| PREDICTED: 60S ribosomal protein L13a [Sus s... 287 5e-87
Alignment gi|XP_003362215.1| PREDICTED: 60S ribosomal protein L13a-like, ... 153 7e-47
>ref|XP_003127353.1| PREDICTED: 60S ribosomal protein L13a [Sus scrofa].
Length = 203
Score = 287 bits (735), Expect(2) = 5e-87
Identities = 142/154 (92%), Positives = 142/154 (92%)
Frame = +3
Query: 117 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP 296
NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP
Sbjct: 50 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP 109
Query: 297 PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYX 476
PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY
Sbjct: 110 PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYR 169
Query: 477 XXXXXXXXXXXAEKNVEKKIDRFTEVLKTHGFLV 578
AEKNVEKKIDRFTEVLKTHGFLV
Sbjct: 170 KKKQLMRLRKQAEKNVEKKIDRFTEVLKTHGFLV 203
Score = 52.8 bits (125), Expect(2) = 5e-87
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +1
Query: 25 MAEGQQVLVLDGRGHLLGRLAAIVAKQVLL 114
MAEGQ VLVLDGRGHLLGRLAAIVAKQVLL
Sbjct: 1 MAEGQ-VLVLDGRGHLLGRLAAIVAKQVLL 29
>ref|XP_003362215.1| PREDICTED: 60S ribosomal protein L13a-like, partial [Sus scrofa].
Length = 155
Score = 153 bits (387), Expect(2) = 7e-47
Identities = 90/153 (58%), Positives = 93/153 (60%)
Frame = +3
Query: 117 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP 296
NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRT
Sbjct: 50 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRT-----------------------XXX 86
Query: 297 PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYX 476
KKRMVVPAALKVVR P+ +FAYLGRLAHEVGWKYQA RK+
Sbjct: 87 XXXXXKKRMVVPAALKVVRXXPSPQFAYLGRLAHEVGWKYQA------RLRKQ------- 133
Query: 477 XXXXXXXXXXXAEKNVEKKIDRFTEVLKTHGFL 575
AEKNVEKKIDRFTEVLKTHGFL
Sbjct: 134 -----------AEKNVEKKIDRFTEVLKTHGFL 155
Score = 52.8 bits (125), Expect(2) = 7e-47
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +1
Query: 25 MAEGQQVLVLDGRGHLLGRLAAIVAKQVLL 114
MAEGQ VLVLDGRGHLLGRLAAIVAKQVLL
Sbjct: 1 MAEGQ-VLVLDGRGHLLGRLAAIVAKQVLL 29
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,172,187
Number of extensions: 969078
Number of successful extensions: 2527
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2520
Number of HSP's successfully gapped: 4
Length of query: 422
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 320
Effective length of database: 8,804,438
Effective search space: 2817420160
Effective search space used: 2817420160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012340
(1268 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033464.2| 60S ribosomal protein L13a [Mus musculus]. 273 2e-82
Alignment gi|XP_919283.3| PREDICTED: 60S ribosomal protein L13a-like [Mus... 256 2e-68
>ref|NP_033464.2| 60S ribosomal protein L13a [Mus musculus].
Length = 203
Score = 273 bits (697), Expect(2) = 2e-82
Identities = 135/154 (87%), Positives = 139/154 (90%)
Frame = +3
Query: 117 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP 296
NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAAL+RLKV DGIP
Sbjct: 50 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIP 109
Query: 297 PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYX 476
PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAK+HY
Sbjct: 110 PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYR 169
Query: 477 XXXXXXXXXXXAEKNVEKKIDRFTEVLKTHGFLV 578
AEKNVEKKI +FTEVLKT+G LV
Sbjct: 170 KKKQILRLRKQAEKNVEKKICKFTEVLKTNGLLV 203
Score = 52.8 bits (125), Expect(2) = 2e-82
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +1
Query: 25 MAEGQQVLVLDGRGHLLGRLAAIVAKQVLL 114
MAEGQ VLVLDGRGHLLGRLAAIVAKQVLL
Sbjct: 1 MAEGQ-VLVLDGRGHLLGRLAAIVAKQVLL 29
>ref|XP_919283.3| PREDICTED: 60S ribosomal protein L13a-like [Mus musculus].
Length = 174
Score = 256 bits (655), Expect = 2e-68
Identities = 127/153 (83%), Positives = 134/153 (87%)
Frame = +3
Query: 117 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP 296
NKL+YLAFL+K+MNTNPSRGPYHFRAPSRIFWRTVRGMLP KTKRGQAAL+RLKV DG P
Sbjct: 21 NKLRYLAFLQKQMNTNPSRGPYHFRAPSRIFWRTVRGMLPQKTKRGQAALERLKVLDGTP 80
Query: 297 PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYX 476
PPYDKKKRMVVPAALKVVRLKPTR FAYLGRLAHEV WKYQAVTATLEEKRKEKAK+HY
Sbjct: 81 PPYDKKKRMVVPAALKVVRLKPTRTFAYLGRLAHEVWWKYQAVTATLEEKRKEKAKMHYW 140
Query: 477 XXXXXXXXXXXAEKNVEKKIDRFTEVLKTHGFL 575
AEKNVEKKI +FTEVLKT+G L
Sbjct: 141 KKKQILRLRKQAEKNVEKKICKFTEVLKTNGLL 173
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,251,258
Number of extensions: 928781
Number of successful extensions: 3352
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3340
Number of HSP's successfully gapped: 3
Length of query: 422
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 318
Effective length of database: 12,493,815
Effective search space: 3973033170
Effective search space used: 3973033170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012340
(1268 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036555.1| 60S ribosomal protein L13a [Homo sapiens]. 283 2e-84
>ref|NP_036555.1| 60S ribosomal protein L13a [Homo sapiens].
Length = 203
Score = 283 bits (723), Expect(2) = 2e-84
Identities = 139/154 (90%), Positives = 141/154 (91%)
Frame = +3
Query: 117 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP 296
NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP
Sbjct: 50 NKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIP 109
Query: 297 PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYX 476
PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY
Sbjct: 110 PPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYR 169
Query: 477 XXXXXXXXXXXAEKNVEKKIDRFTEVLKTHGFLV 578
AEKNVEKKID++TEVLKTHG LV
Sbjct: 170 KKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGLLV 203
Score = 49.7 bits (117), Expect(2) = 2e-84
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +1
Query: 40 QVLVLDGRGHLLGRLAAIVAKQVLL 114
QVLVLDGRGHLLGRLAAIVAKQVLL
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLL 29
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,138,759
Number of extensions: 1136256
Number of successful extensions: 3937
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3926
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,835,944
Effective search space: 4702994248
Effective search space used: 4702994248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012340
(1268 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 579 e-162
gb|GL895177.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 414 e-113
Sscrofa_Chr13 379 e-102
Sscrofa_Chr06 248 6e-63
Sscrofa_Chr03 228 6e-57
Sscrofa_Chr02 226 2e-56
gb|GL896454.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 222 4e-55
Sscrofa_Chr11 143 3e-31
>Sscrofa_Chr12
|| Length = 63588571
Score = 579 bits (292), Expect = e-162
Identities = 390/422 (92%), Gaps = 3/422 (0%)
Strand = Plus / Minus
Query: 188 ccgagcccccagccgcatcttctggcggacggtgcgaggcatgctgccccacaagaccaa 247
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17403893 ccgaggccccagccgcatcttctggcggacggtgcgaggcatgctgccccacaagaccaa 17403834
Query: 248 gcgagggcaggccgccctggaccgtctcaaggtgttcgatgggatcccgccaccctatga 307
|||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 17403833 gcgaggtcaggccgccctggaccgcctcaaggtgtttgatgggatcccaccaccctatga 17403774
Query: 308 caagaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcg 367
|||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct: 17403773 caagaaaaagcggatggtggttcctgccaccctcaaggtggtgtgtctgaagcctacgcg 17403714
Query: 368 gaagttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagttac 427
|||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct: 17403713 gaagtttgcctacctggggtgcctcgctcatcaggttggctggaagtaccaggcagttac 17403654
Query: 428 agccaccctggaggagaagaggaaggagaaggccaagatccattaccgcaagaagaagca 487
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 17403653 agccaccct---ggagaagaggaaggagaaggccaagatccattaccaaaagaagaaaca 17403597
Query: 488 gctcatgaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcac 547
|||||||||||| ||||| |||| ||||||||| ||||||||||||| |||| |||||
Sbjct: 17403596 gctcatgaggctatggaagtaggccgaaaagaacatagagaagaagattgacaaattcac 17403537
Query: 548 ggaggtcctcaagactcatggattcctagtctgagcacaataaaattgactgtttattct 607
|||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17403536 agaggtccttaaaacccatggattcctagtctgagcacaataaaattgactgtttattct 17403477
Query: 608 tc 609
||
Sbjct: 17403476 tc 17403475
Score = 159 bits (80), Expect = 5e-36
Identities = 298/370 (80%), Gaps = 13/370 (3%)
Strand = Plus / Minus
Query: 115 gaaacaaactgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgag 174
||||||||| ||||||||| | ||||||||||||||| || |||||||| ||||| |
Sbjct: 5709286 gaaacaaacggaagtacctagtcttcctccgcaagcgggtgcgcaccaacccatcccgcg 5709227
Query: 175 gcccctaccacttccgagcccccagccgcatcttctggcggacggtgcgaggcatgctgc 234
|| || |||||||| ||||||| |||| |||| |||| || || || ||| ||||||
Sbjct: 5709226 gctccaaccacttctgagccccaagccacatccgctggtgggtggcgcagggcttgctgc 5709167
Query: 235 cccacaagaccaagcgagggcaggccgccctgga-ccgtctcaaggtgttcgatgggatc 293
||||||||||| ||| || |||||| ||| ||| || || | |||||| | ||| |
Sbjct: 5709166 cccacaagacccagcctggccaggccaccccggaaccctcggatggtgttttagggggcc 5709107
Query: 294 ccgccaccctatgacaagaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgt 353
| ||| |||||||||||||||||| | || |||| |||||||||||||| ||||||
Sbjct: 5709106 ctgccgccctatgacaagaaaaaggggatcgtgggtcctgccgccctcaaaatggtgcac 5709047
Query: 354 ctgaagcctacgcggaagttcgcctacctgggacgcctggctcatgaggttggctggaag 413
||||||||||| ||||||| |||||||||| |||||||||||| |||||||
Sbjct: 5709046 ctgaagcctacagggaagtttgcctacctgg---------ctcatgaggttgcctggaag 5708996
Query: 414 taccaggcagttacagccaccctggaggagaagaggaaggagaaggccaagatccattac 473
||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 5708995 taccaggcagtaaccaccaccctggag---aagaggaaggagaacgccaagatccattac 5708939
Query: 474 cgcaagaaga 483
|||||||||
Sbjct: 5708938 tgcaagaaga 5708929
Score = 159 bits (80), Expect = 5e-36
Identities = 298/370 (80%), Gaps = 13/370 (3%)
Strand = Plus / Plus
Query: 115 gaaacaaactgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgag 174
||||||||| ||||||||| | ||||||||||||||| || |||||||| ||||| |
Sbjct: 5953222 gaaacaaacggaagtacctagtcttcctccgcaagcgggtgcgcaccaacccatcccgcg 5953281
Query: 175 gcccctaccacttccgagcccccagccgcatcttctggcggacggtgcgaggcatgctgc 234
|| || |||||||| ||||||| |||| |||| |||| || || || ||| ||||||
Sbjct: 5953282 gctccaaccacttctgagccccaagccacatccgctggtgggtggcgcagggcttgctgc 5953341
Query: 235 cccacaagaccaagcgagggcaggccgccctgga-ccgtctcaaggtgttcgatgggatc 293
||||||||||| ||| || |||||| ||| ||| || || | |||||| | ||| |
Sbjct: 5953342 cccacaagacccagcctggccaggccaccccggaaccctcggatggtgttttagggggcc 5953401
Query: 294 ccgccaccctatgacaagaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgt 353
| ||| |||||||||||||||||| | || |||| |||||||||||||| ||||||
Sbjct: 5953402 ctgccgccctatgacaagaaaaaggggatcgtgggtcctgccgccctcaaaatggtgcac 5953461
Query: 354 ctgaagcctacgcggaagttcgcctacctgggacgcctggctcatgaggttggctggaag 413
||||||||||| ||||||| ||||||||| ||||||||||||| |||||||
Sbjct: 5953462 ctgaagcctacagggaagtttgcctacctg---------gctcatgaggttgcctggaag 5953512
Query: 414 taccaggcagttacagccaccctggaggagaagaggaaggagaaggccaagatccattac 473
||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 5953513 taccaggcagtaaccaccaccct---ggagaagaggaaggagaacgccaagatccattac 5953569
Query: 474 cgcaagaaga 483
|||||||||
Sbjct: 5953570 tgcaagaaga 5953579
Score = 77.8 bits (39), Expect = 1e-11
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 5 ttcccaggcagctgccgaagatggcggaggggcagcaggtgctggtgctcgatggccgag 64
||||||||||| |||| ||||||| ||||||||||||||||| ||||| | |||| ||
Sbjct: 5709454 ttcccaggcaggtgccaaagatgggagaggggcagcaggtgcttctgctccacggccaag 5709395
Query: 65 gccatctcctgggccgcctggcggccattgtggccaagcaggtacttctgg 115
|||| ||||||| | ||||| |||||| || ||| ||||||| |||||||
Sbjct: 5709394 gccacctcctggactacctggaggccatggttgccgagcaggtgcttctgg 5709344
Score = 77.8 bits (39), Expect = 1e-11
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 5 ttcccaggcagctgccgaagatggcggaggggcagcaggtgctggtgctcgatggccgag 64
||||||||||| |||| ||||||| ||||||||||||||||| ||||| | |||| ||
Sbjct: 5953054 ttcccaggcaggtgccaaagatgggagaggggcagcaggtgcttctgctccacggccaag 5953113
Query: 65 gccatctcctgggccgcctggcggccattgtggccaagcaggtacttctgg 115
|||| ||||||| | ||||| |||||| || ||| ||||||| |||||||
Sbjct: 5953114 gccacctcctggactacctggaggccatggttgccgagcaggtgcttctgg 5953164
>gb|GL895177.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3769
Length = 38942
Score = 414 bits (209), Expect = e-113
Identities = 357/405 (88%), Gaps = 1/405 (0%)
Strand = Plus / Minus
Query: 202 gcatcttctggcggacggtgcgaggcatgctgccccacaagaccaagcgagggcaggccg 261
|||||||||||||||||||| ||||||| |||||| ||||||| | | |||| ||||||
Sbjct: 30237 gcatcttctggcggacggtgtgaggcatcctgccc-acaagactaggggaggccaggcca 30179
Query: 262 ccctggaccgtctcaaggtgttcgatgggatcccgccaccctatgacaagaaaaagcgca 321
|||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||| |
Sbjct: 30178 ccctagaccacctcaaggtgtttgatgagatcccgccaccctatgacaagaaaaagcgga 30119
Query: 322 tggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcggaagttcgcctacc 381
|| || | ||||||||||||||||||||||||||||| |||| ||||||||| |||||||
Sbjct: 30118 tgatgattcctgccgccctcaaggtggtgcgtctgaaacctatgcggaagtttgcctacc 30059
Query: 382 tgggacgcctggctcatgaggttggctggaagtaccaggcagttacagccaccctggagg 441
|||| |||||||| |||||||||||||||||||||| || |||||| |||||| ||||
Sbjct: 30058 tggggtgcctggcttatgaggttggctggaagtaccatgccattacagtcaccctagagg 29999
Query: 442 agaagaggaaggagaaggccaagatccattaccgcaagaagaagcagctcatgaggctgc 501
| |||| || ||||||||||||| |||||||| | |||||||| |||| |||||| ||
Sbjct: 29998 aaaagatgagggagaaggccaagttccattactggaagaagaaacagcccatgagactat 29939
Query: 502 ggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggtcctcaaga 561
||||| |||| ||||||||| ||||||||||||| |||| |||| |||||||||||||
Sbjct: 29938 ggaaggaggccgaaaagaacatagagaagaagattgacaaattcatagaggtcctcaaga 29879
Query: 562 ctcatggattcctagtctgagcacaataaaattgactgtttattc 606
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29878 cccatggattcctagtctgagcacaataaaattgactgtttattc 29834
>Sscrofa_Chr13
|| Length = 218635234
Score = 379 bits (191), Expect = e-102
Identities = 418/493 (84%), Gaps = 3/493 (0%)
Strand = Plus / Minus
Query: 116 aaacaaactgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgagg 175
||||||||| ||||||||||||||||| | |||| | | | ||||||| |||| ||||
Sbjct: 158258422 aaacaaacttaagtacctggccttccttcacaagagggtcgacaccaacctgtccggagg 158258363
Query: 176 cccctaccacttccgagcccccagccgcatcttctggcggacggtgcgaggcatgctgcc 235
||| ||| ||||| || |||||||| |||||||||| ||| |||| ||||||||||||
Sbjct: 158258362 cccttactgcttcccagaccccagccacatcttctggtggatggtgtgaggcatgctgct 158258303
Query: 236 ccacaagaccaagcgagggcaggccgccctggaccgtctcaaggtgttcgatgggatccc 295
||||||||||||| ||| |||||||||||||||| |||||||||| |||||||| ||
Sbjct: 158258302 gcacaagaccaagctaggccaggccgccctggaccacttcaaggtgtttgatgggatgcc 158258243
Query: 296 gccaccctatgacaagaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtct 355
||| |||||||||||||| || |||||| | ||| ||||||||||||||| ||||
Sbjct: 158258242 tccatgctatgacaagaaaaggcagatggtgtttcctctagccctcaaggtggtgtgtct 158258183
Query: 356 gaagcctacgcggaagttcgcctacctgggacgcctggctcatgaggttggctggaagta 415
|||||||| || |||||| ||||| ||||| ||||||||||||||||||||| | ||||
Sbjct: 158258182 gaagcctatgcagaagtttgcctatctggggtgcctggctcatgaggttggctaggagta 158258123
Query: 416 ccaggcagttacagccaccctggaggagaagaggaaggagaaggccaagatccattaccg 475
||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 158258122 ccaggcagtaacagccaccctggaggtgaagaggaaggagaaggccaagacccattacca 158258063
Query: 476 caagaagaagcagctcatgaggctgcggaagcaggcggaaaagaacgtagagaagaagat 535
|||||||| ||||| ||||||| | || |||| | | ||||||| ||| ||||||
Sbjct: 158258062 gaagaagaaacagcttgtgaggctacagacgcagaccggaaagaacatag---ggaagat 158258006
Query: 536 cgacaggttcacggaggtcctcaagactcatggattcctagtctgagcacaataaaattg 595
||||| |||| |||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct: 158258005 tgacagattcatagaggaccgcaagacccatggattcctagtctgagcacaataaaattg 158257946
Query: 596 actgtttattctt 608
|||||||||||||
Sbjct: 158257945 actgtttattctt 158257933
Score = 192 bits (97), Expect = 3e-46
Identities = 190/221 (85%)
Strand = Plus / Plus
Query: 389 cctggctcatgaggttggctggaagtaccaggcagttacagccaccctggaggagaagag 448
|||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||
Sbjct: 95672698 cctggctcatgaggttggctagaagtaccaggaggtaacagccaccctggaagagaagag 95672757
Query: 449 gaaggagaaggccaagatccattaccgcaagaagaagcagctcatgaggctgcggaagca 508
|| ||| ||||||||| |||||||||| | |||| ||||| |||||||||| |||||||
Sbjct: 95672758 gagggaaaaggccaaggtccattaccggatgaagcagcagatcatgaggctatggaagca 95672817
Query: 509 ggcggaaaagaacgtagagaagaagatcgacaggttcacggaggtcctcaagactcatgg 568
||| ||||||||| | |||||||| | || | ||||| ||||| ||||||| ||||
Sbjct: 95672818 ggccgaaaagaacatcgagaagaaaactgataaattcacagaggttctcaagatctatgg 95672877
Query: 569 attcctagtctgagcacaataaaattgactgtttattcttc 609
||||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 95672878 attcctagtctaagcccaataaaattgactatttattcttc 95672918
Score = 79.8 bits (40), Expect = 3e-12
Identities = 98/117 (83%), Gaps = 4/117 (3%)
Strand = Plus / Minus
Query: 3 ttttcccaggcagctgccgaagatggcggaggggcagcaggtgctggtgctcgatggccg 62
|||||||||| ||||| ||||||| ||| ||||||||||||||||||||| ||||| |
Sbjct: 158258597 ttttcccaggtgactgccaaagatggtggaagggcagcaggtgctggtgctccatggctg 158258538
Query: 63 aggcc----atctcctgggccgcctggcggccattgtggccaagcaggtacttctgg 115
|||| ||||||||||| ||||||| ||||| | ||||||||||| |||||||
Sbjct: 158258537 aggctggctatctcctgggctgcctggcagccatcatagccaagcaggtgcttctgg 158258481
>Sscrofa_Chr06
|| Length = 157765593
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 370 agttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagttacag 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296878 agttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagttacag 50296937
Query: 430 ccaccctggaggagaagaggaaggagaaggccaagatccattaccgcaagaagaagcagc 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296938 ccaccctggaggagaagaggaaggagaaggccaagatccattaccgcaagaagaagcagc 50296997
Query: 490 tcatg 494
|||||
Sbjct: 50296998 tcatg 50297002
Score = 222 bits (112), Expect = 4e-55
Identities = 115/116 (99%)
Strand = Plus / Plus
Query: 494 gaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggt 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50297196 gaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggt 50297255
Query: 554 cctcaagactcatggattcctagtctgagcacaataaaattgactgtttattcttc 609
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50297256 cctcaagacccatggattcctagtctgagcacaataaaattgactgtttattcttc 50297311
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 124 tgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctacc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50295990 tgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctacc 50296049
Query: 184 acttccgagcccccagccgcatcttctggcggacggtgcgagg 226
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296050 acttccgagcccccagccgcatcttctggcggacggtgcgagg 50296092
Score = 174 bits (88), Expect = 8e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 224 aggcatgctgccccacaagaccaagcgagggcaggccgccctggaccgtctcaaggtgtt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296288 aggcatgctgccccacaagaccaagcgagggcaggccgccctggaccgtctcaaggtgtt 50296347
Query: 284 cgatgggatcccgccaccctatgacaag 311
||||||||||||||||||||||||||||
Sbjct: 50296348 cgatgggatcccgccaccctatgacaag 50296375
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 37 cagcaggtgctggtgctcgatggccgaggccatctcctgggccgcctggcggccattgtg 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50295298 cagcaggtgctggtgctcgatggccgaggccatctcctgggccgcctggcggccattgtg 50295357
Query: 97 gccaagcaggtacttctgg 115
|||||||||||||||||||
Sbjct: 50295358 gccaagcaggtacttctgg 50295376
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 310 agaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcgga 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296557 agaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcgga 50296616
Query: 370 ag 371
||
Sbjct: 50296617 ag 50296618
Score = 71.9 bits (36), Expect = 8e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 4 tttcccaggcagctgccgaagatggcggaggggcag 39
||||||||||||||||||||||||||||||||||||
Sbjct: 50293766 tttcccaggcagctgccgaagatggcggaggggcag 50293801
>Sscrofa_Chr03
|| Length = 144787322
Score = 228 bits (115), Expect = 6e-57
Identities = 376/460 (81%), Gaps = 21/460 (4%)
Strand = Plus / Minus
Query: 153 atgaataccaacccgtcccgaggcccctaccacttccgagcccccagccgcatcttctgg 212
||||| |||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct: 117349362 atgaacaccaacccatcccgcagcctctaccacttccaagcccccagccgcatcttctgg 117349303
Query: 213 cggacggtgcgaggcatgctgccccacaagaccaagcgagggcaggccgccctggaccgt 272
|||| |||| |||||||| | ||||||||||||| | ||| |||||| |||||||||
Sbjct: 117349302 tggacagtgcaaggcatgcaggcccacaagaccaa-caaggccaggccaccctggaccac 117349244
Query: 273 ctcaaggtgttcgatgggatcccgccaccctatgacaagaaaaagcgcatggtggtgcct 332
||||||||||| ||||| ||| | || || ||| |||| |||| || |||
Sbjct: 117349243 ctcaaggtgtttgatggaatcacacctccttat--------aaag-gcatatgggatcct 117349193
Query: 333 gccgccctcaaggtggtgcgtctgaagcctacgcggaagttcgcctacctgggacg-cct 391
||||||||||||||| | | |||||||||||| | ||||| ||||||||||| | |||
Sbjct: 117349192 gccgccctcaaggtgatacatctgaagcctacacagaagtctgcctacctgggggggcct 117349133
Query: 392 ggctcatgaggttggctggaagtaccaggcagttacagccaccctggaggagaagaggaa 451
|||| |||||||| |||||||||||||| || ||||||||||||| |||||||| |||
Sbjct: 117349132 ggcttgtgaggttgactggaagtaccaggtggtaacagccaccctgggggagaagaagaa 117349073
Query: 452 ggagaaggccaagatccattaccgcaagaagaagcagctcatgaggctgcggaagcaggc 511
|||||||||||||||||||| || ||||| || |||||||||||||| | |||||||||
Sbjct: 117349072 ggagaaggccaagatccattcccagaagaaaaaacagctcatgaggctacagaagcaggc 117349013
Query: 512 ggaaaagaacgtagagaagaagatcgacaggttcacggaggtcctcaagactcatggatt 571
|||||||| |||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 117349012 caaaaagaacatagagaagaaga-------attcacagaggttctcaagacccatggatt 117348960
Query: 572 cctagtc---tgagcacaataaaattgactgtttattctt 608
|| |||| | ||| |||| ||||||||||||||||||
Sbjct: 117348959 ccaagtctaataagcctaatagaattgactgtttattctt 117348920
Score = 87.7 bits (44), Expect = 1e-14
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 8 ccaggcagctgccgaagatggcggaggggcagcaggtgctggtgctcgatggccgaggcc 67
|||||||||||| ||||||| | |||||| |||||||||| ||||| |||||| |||||
Sbjct: 117349566 ccaggcagctgctgaagatgtcagaggggaagcaggtgctactgctcaatggccaaggcc 117349507
Query: 68 atctcctgggccgcctggcggccattgtggccaagcaggt 107
|||||||||||| |||| ||||| |||||||||||||
Sbjct: 117349506 atctcctgggccatctggaagccatcatggccaagcaggt 117349467
>Sscrofa_Chr02
|| Length = 162569375
Score = 226 bits (114), Expect = 2e-56
Identities = 297/356 (83%), Gaps = 4/356 (1%)
Strand = Plus / Plus
Query: 115 gaaacaaactgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgag 174
||||||||||||||||| |||||||| |||| |||| || || |||||||| ||||
Sbjct: 5646447 gaaacaaactgaagtacgtggccttcttccgaaagcagataaacaccaacccatcccaca 5646506
Query: 175 gcccctaccacttccgagcccccagccgcatcttctggcggacggtgcgaggcatgctgc 234
||||| | | ||||||||| |||||| ||||||| |||||| | |||||||| | ||||
Sbjct: 5646507 gccccgatcccttccgagctcccagc-gcatcttttggcggcccatgcgaggcctcctgc 5646565
Query: 235 cccacaagaccaagcgagggcaggccgccctggaccgtctcaaggtgttcgatgggatcc 294
||||||||||||||| | ||||| |||||||||| |||||||||| ||||||| |
Sbjct: 5646566 tccacaagaccaagcggagccaggctgccctggacc---tcaaggtgtttgatgggaagc 5646622
Query: 295 cgccaccctatgacaagaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtc 354
| || ||| |||||||||||||||| |||||||| |||| |||||||||||||||| ||
Sbjct: 5646623 caccgcccaatgacaagaaaaagcggatggtggttcctggtgccctcaaggtggtgcctc 5646682
Query: 355 tgaagcctacgcggaagttcgcctacctgggacgcctggctcatgaggttggctggaagt 414
|||| |||||| | ||||| |||| || | ||||||| |||||||||||||| |||
Sbjct: 5646683 tgaaacctacgtgaaagtttacctagttgcggtgcctggcccatgaggttggctgttagt 5646742
Query: 415 accaggcagttacagccaccctggaggagaagaggaaggagaaggccaagatccat 470
|||||| ||| ||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct: 5646743 accaggaagtaacagccaccatggaggagaacaggaaagagaaggccaagatccat 5646798
Score = 69.9 bits (35), Expect = 3e-09
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 4 tttcccaggcagctgccgaagatggcggaggggcagcaggtgctggtgctc 54
|||||||||| ||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 5646316 tttcccaggctgctgctgaagatggcggaggggcggcaggtgctggggctc 5646366
>gb|GL896454.1| Sus scrofa unplaced genomic scaffold chrU_scaffold793
Length = 14988
Score = 222 bits (112), Expect = 4e-55
Identities = 115/116 (99%)
Strand = Plus / Plus
Query: 494 gaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggt 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13253 gaggctgcggaagcaggcggaaaagaacgtagagaagaagatcgacaggttcacggaggt 13312
Query: 554 cctcaagactcatggattcctagtctgagcacaataaaattgactgtttattcttc 609
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13313 cctcaagactcatggattcctagtcagagcacaataaaattgactgtttattcttc 13368
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 124 tgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctacc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11716 tgaagtacctggccttcctccgcaagcgcatgaataccaacccgtcccgaggcccctacc 11775
Query: 184 acttccgagcccccagccgcatcttctggcggacg 218
|||||||||||||||||||||||||||||||||||
Sbjct: 11776 acttccgagcccccagccgcatcttctggcggacg 11810
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 37 cagcaggtgctggtgctcgatggccgaggccatctcctgggccgcctggcggccattgtg 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11024 cagcaggtgctggtgctcgatggccgaggccatctcctgggccgcctggcggccattgtg 11083
Query: 97 gccaagcaggtacttctgg 115
|||||||||||||||||||
Sbjct: 11084 gccaagcaggtacttctgg 11102
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 370 agttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagt 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12885 agttcgcctacctgggacgcctggctcatgaggttggctggaagtaccaggcagt 12939
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 310 agaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtc 354
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416 agaaaaagcgcatggtggtgcctgccgccctcaaggtggtgcgtc 12460
Score = 71.9 bits (36), Expect = 8e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 4 tttcccaggcagctgccgaagatggcggaggggcag 39
||||||||||||||||||||||||||||||||||||
Sbjct: 9424 tttcccaggcagctgccgaagatggcggaggggcag 9459
>Sscrofa_Chr11
|| Length = 87690581
Score = 143 bits (72), Expect = 3e-31
Identities = 169/200 (84%), Gaps = 1/200 (0%)
Strand = Plus / Minus
Query: 322 tggtggtgcctgccgccctcaaggtggtgcgtctgaagcctacgcggaagttcgcctacc 381
||||||| ||||| ||| ||| |||||| | ||| ||||||| |||||||| |||||
Sbjct: 87330747 tggtggttcctgctgccttcagggtggtttgcttgacgcctacg-ggaagttcacctact 87330689
Query: 382 tgggacgcctggctcatgaggttggctggaagtaccaggcagttacagccaccctggagg 441
| | ||||||||| |||||||||||||||| ||||||| || ||||||||||||||||
Sbjct: 87330688 tagagcgcctggcttgtgaggttggctggaagcaccaggcggtaacagccaccctggagg 87330629
Query: 442 agaagaggaaggagaaggccaagatccattaccgcaagaagaagcagctcatgaggctgc 501
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Sbjct: 87330628 agaagaggaaggagaaggccaagatctgttactggaagaacaagccactcaagaggccac 87330569
Query: 502 ggaagcaggcggaaaagaac 521
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Sbjct: 87330568 ggaagcaggctgaaaagaac 87330549
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,955,659
Number of extensions: 272
Number of successful extensions: 272
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 35
Length of query: 1268
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1247
Effective length of database: 2,808,413,156
Effective search space: 3502091205532
Effective search space used: 3502091205532
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)