Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012343
(1217 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069781.1| isocitrate dehydrogenase [NAD] subunit gamma... 572 e-163
Alignment gi|NP_001161346.1| isocitrate dehydrogenase [NAD] subunit beta,... 283 3e-76
Alignment gi|NP_001139344.1| isocitrate dehydrogenase [NAD] subunit beta,... 282 4e-76
Alignment gi|NP_777069.1| isocitrate dehydrogenase [NAD] subunit alpha, m... 213 6e-57
Alignment gi|XP_002683942.1| PREDICTED: isocitrate dehydrogenase-like, pa... 55 1e-07
>ref|NP_001069781.1| isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial precursor
[Bos taurus].
Length = 392
Score = 572 bits (1475), Expect = e-163
Identities = 291/352 (82%), Positives = 298/352 (84%)
Frame = +3
Query: 111 RPALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 290
RPALL RPWEVLG+HEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR
Sbjct: 18 RPALLWRPWEVLGSHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 77
Query: 291 HACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTS 470
HACVPVDFEEVHVSS ADEED VALKGNIETNHNLPPSHKSRNNILRTS
Sbjct: 78 HACVPVDFEEVHVSSTADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTS 137
Query: 471 LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 650
LDLYANVIHCKSLPGVVTRHRD+DILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL
Sbjct: 138 LDLYANVIHCKSLPGVVTRHRDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 197
Query: 651 RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM 830
RIAEYAF+LAQE+GRKKVTAVHKANIMKLGDGLFLQCC+EVAA YP ITFENMIVDNTTM
Sbjct: 198 RIAEYAFQLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTM 257
Query: 831 QLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIA 1010
QLVSRPQQFDVMVMPNLYGNIVNNVC NYGHVYAVFETATRNTG+SIA
Sbjct: 258 QLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIA 317
Query: 1011 NKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQG 1166
NKNIA P + K VLASMDNENMHTPDIGGQG
Sbjct: 318 NKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQG 369
>ref|NP_001161346.1| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform 1
precursor [Bos taurus].
Length = 383
Score = 283 bits (723), Expect = 3e-76
Identities = 158/331 (47%), Positives = 196/331 (59%), Gaps = 3/331 (0%)
Frame = +3
Query: 177 SQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADE 347
S +T + G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A E
Sbjct: 35 SSRTQGEDVRVEGAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASE 94
Query: 348 EDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTR 527
E VA+ G I T S + LR LDL+ANV+H KSLPG TR
Sbjct: 95 EKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYKTR 154
Query: 528 HRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVT 707
H ++D++I+RE TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVT
Sbjct: 155 HNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRGKVT 214
Query: 708 AVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYG 887
AVHKANIMKLGDGLFLQCC+EVA YP I FE MI+DN MQLV P QFDV+VMPNLYG
Sbjct: 215 AVHKANIMKLGDGLFLQCCEEVAELYPKIKFEKMIIDNCCMQLVQNPYQFDVLVMPNLYG 274
Query: 888 NIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIANKNIATPQRRCSQAA*CXX 1067
NI++N+ +Y YAVFET R+ +NIA P A+
Sbjct: 275 NIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLR 334
Query: 1068 XXXXXXXXXXFAKPVLASMDNENMHTPDIGG 1160
A+ V + + T D+GG
Sbjct: 335 HLNLEHHSNMIAEAVKKVIKVGKVRTSDMGG 365
>ref|NP_001139344.1| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform 2
precursor [Bos taurus].
Length = 385
Score = 282 bits (722), Expect = 4e-76
Identities = 158/331 (47%), Positives = 196/331 (59%), Gaps = 3/331 (0%)
Frame = +3
Query: 177 SQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADE 347
S +T + G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A E
Sbjct: 35 SSRTQGEDVRVEGAFPVTMLPGDGVGPELMHAVKEVFKAASVPVEFQEHHLSEVQNMASE 94
Query: 348 EDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTR 527
E VA+ G I T S + LR LDL+ANV+H KSLPG TR
Sbjct: 95 EKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYKTR 154
Query: 528 HRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVT 707
H ++D++I+RE TEGEYSSLEHES GV+E LKI+T+ KS RIA++AF A + GR KVT
Sbjct: 155 HNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRTKSQRIAKFAFDYATKKGRGKVT 214
Query: 708 AVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYG 887
AVHKANIMKLGDGLFLQCC+EVA YP I FE MI+DN MQLV P QFDV+VMPNLYG
Sbjct: 215 AVHKANIMKLGDGLFLQCCEEVAELYPKIKFEKMIIDNCCMQLVQNPYQFDVLVMPNLYG 274
Query: 888 NIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIANKNIATPQRRCSQAA*CXX 1067
NI++N+ +Y YAVFET R+ +NIA P A+
Sbjct: 275 NIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLR 334
Query: 1068 XXXXXXXXXXFAKPVLASMDNENMHTPDIGG 1160
A+ V + + T D+GG
Sbjct: 335 HLNLEHHSNMIAEAVKKVIKVGKVRTRDMGG 365
>ref|NP_777069.1| isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial precursor
[Bos taurus].
Length = 366
Score = 213 bits (543), Expect(2) = 6e-57
Identities = 129/311 (41%), Positives = 176/311 (56%), Gaps = 5/311 (1%)
Frame = +3
Query: 114 PALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRH 293
PA + + +LGA F Q GG TVT+IPGDGIGPE+ V +F
Sbjct: 4 PAWISKVSRLLGA-------FHNQKQVTRGFAGGVKTVTLIPGDGIGPEISAAVMKIFDA 56
Query: 294 ACVPVDFEEVHVSSNADEEDXXXXXXXXXXXX----VALKGNIETNHNLPPSHKSRNNIL 461
A P+ +EE +V++ + LKG ++T + H S N +L
Sbjct: 57 AKAPIQWEERNVAAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTP--IAAGHPSMNLLL 114
Query: 462 RTSLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKA 641
R + DLYANV C S+ G T + DV+I+ +RENTEGEYS +EH V GVV+S+K+IT+A
Sbjct: 115 RKTFDLYANVRPCVSIEGYKTPYHDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEA 174
Query: 642 KSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDN 821
S RIAE+AF+ A+ R VTAVHKANIM++ DGLFLQ C+EVA I F M +D
Sbjct: 175 ASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDT 234
Query: 822 TTMQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYG-HVYAVFETATRNTG 998
+ +V P QFDV+VMPNLYG+I++++C N G + A+FE + T
Sbjct: 235 VCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFE-SVHGTA 293
Query: 999 QSIANKNIATP 1031
IA K++A P
Sbjct: 294 PDIAGKDMANP 304
Score = 26.9 bits (58), Expect(2) = 6e-57
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 1028 PTATLLASCMMLDHLKLHSYATVIRKA 1108
PTA LL++ MML H+ L +A I A
Sbjct: 304 PTALLLSAVMMLRHMGLFDHAAKIETA 330
>ref|XP_002683942.1| PREDICTED: isocitrate dehydrogenase-like, partial [Bos taurus].
Length = 306
Score = 55.5 bits (132), Expect = 1e-07
Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 46/210 (21%)
Frame = +3
Query: 390 VALKGNIETNHNLPPSHKSRNNILRTSLDLYA---NVIHCKSLPGVVTRHRDVDILIVRE 560
V++KG + T + +S N LR LDLY V + K +P V D++I RE
Sbjct: 99 VSIKGPLTTP--VGGGIRSLNVALRQQLDLYVCLRPVRYFKGVPSPVREPEKTDMVIFRE 156
Query: 561 NTEGEYSSLEH--------------ESVAGVVE---------SLKIITKAKSLRIAEYAF 671
N+E Y+ +E+ ++ GV + +K +++ + R+ A
Sbjct: 157 NSEDIYAGIEYMAESEQAKELIQFLQTKLGVKKIRFPATSSIGIKPVSREGTERLVRKAL 216
Query: 672 KLAQETGRKKVTAVHKANIMKLGDGLFLQ-----CCKEVAA----GYPHITFEN------ 806
+ A + R VT VHK NIMK +G F KE A G P F+N
Sbjct: 217 QYAIDNDRASVTLVHKGNIMKFTEGGFRDWGYALAQKEFGAQLIDGGPWCKFKNPKTGRE 276
Query: 807 -----MIVDNTTMQLVSRPQQFDVMVMPNL 881
I D Q++ RP ++DV+ NL
Sbjct: 277 IIVKDSIADAFLQQILLRPAEYDVIATLNL 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,745,363
Number of extensions: 1150372
Number of successful extensions: 6096
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6042
Number of HSP's successfully gapped: 6
Length of query: 405
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,207,134
Effective search space: 4262140200
Effective search space used: 4262140200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012343
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012343
(1217 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538201.2| PREDICTED: similar to Isocitrate dehydrogenase ... 578 e-165
Alignment gi|XP_867343.1| PREDICTED: similar to Isocitrate dehydrogenase ... 526 e-149
Alignment gi|XP_867331.1| PREDICTED: similar to Isocitrate dehydrogenase ... 498 e-141
Alignment gi|XP_867314.1| PREDICTED: similar to Isocitrate dehydrogenase ... 485 e-137
Alignment gi|XP_542534.2| PREDICTED: similar to Isocitrate dehydrogenase ... 477 e-135
Alignment gi|XP_867307.1| PREDICTED: similar to Isocitrate dehydrogenase ... 382 e-106
Alignment gi|XP_861581.1| PREDICTED: similar to isocitrate dehydrogenase ... 282 5e-76
Alignment gi|XP_861552.1| PREDICTED: similar to isocitrate dehydrogenase ... 282 5e-76
Alignment gi|XP_534367.2| PREDICTED: similar to isocitrate dehydrogenase ... 281 7e-76
Alignment gi|XP_536213.2| PREDICTED: similar to isocitrate dehydrogenase ... 213 1e-56
>ref|XP_538201.2| PREDICTED: similar to Isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial precursor (Isocitric dehydrogenase)
(NAD(+)-specific ICDH) isoform 1 [Canis familiaris].
Length = 392
Score = 578 bits (1491), Expect = e-165
Identities = 294/352 (83%), Positives = 298/352 (84%)
Frame = +3
Query: 111 RPALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 290
RPALLCRPWEVLGAHE PRRS SQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR
Sbjct: 18 RPALLCRPWEVLGAHEVPRRSVSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 77
Query: 291 HACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTS 470
HACVPVDFEEVHVSSNADEED VALKGNIETNHNLPPSHKSRNNILRTS
Sbjct: 78 HACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTS 137
Query: 471 LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 650
LDLYANVIHCKSLPGVVTRHRD+DILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL
Sbjct: 138 LDLYANVIHCKSLPGVVTRHRDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 197
Query: 651 RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM 830
RIAEYAFKLAQE+GRKKVTAVHKANIMKLGDGLFLQCCKEVAA YP ITFENMIVDNTTM
Sbjct: 198 RIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCKEVAARYPQITFENMIVDNTTM 257
Query: 831 QLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIA 1010
QLVSRPQQFDVMVMPNLYGNIVNNVC NYGHVYAVFETATRNTG+SIA
Sbjct: 258 QLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIA 317
Query: 1011 NKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQG 1166
NKNIA P + K VLASMDNENMHTPDIGGQG
Sbjct: 318 NKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQG 369
>ref|XP_867343.1| PREDICTED: similar to Isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial precursor (Isocitric dehydrogenase)
(NAD(+)-specific ICDH) isoform 7 [Canis familiaris].
Length = 352
Score = 526 bits (1356), Expect = e-149
Identities = 269/325 (82%), Positives = 273/325 (84%)
Frame = +3
Query: 192 PPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSNADEEDXXXXXX 371
PPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSNADEED
Sbjct: 5 PPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSNADEEDIRNAIM 64
Query: 372 XXXXXXVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDVDILI 551
VALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRD+DILI
Sbjct: 65 AIRRNRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDIDILI 124
Query: 552 VRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVTAVHKANIM 731
VRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQE+GRKKVTAVHKANIM
Sbjct: 125 VRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIM 184
Query: 732 KLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCX 911
KLGDGLFLQCCKEVAA YP ITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVC
Sbjct: 185 KLGDGLFLQCCKEVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCA 244
Query: 912 XXXXXXXXXXXXNYGHVYAVFETATRNTGQSIANKNIATPQRRCSQAA*CXXXXXXXXXX 1091
NYGHVYAVFETATRNTG+SIANKNIA P +
Sbjct: 245 GLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYA 304
Query: 1092 XXFAKPVLASMDNENMHTPDIGGQG 1166
K VLASMDNENMHTPDIGGQG
Sbjct: 305 TSIRKAVLASMDNENMHTPDIGGQG 329
>ref|XP_867331.1| PREDICTED: similar to Isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial precursor (Isocitric dehydrogenase)
(NAD(+)-specific ICDH) isoform 6 [Canis familiaris].
Length = 335
Score = 498 bits (1283), Expect = e-141
Identities = 256/312 (82%), Positives = 260/312 (83%)
Frame = +3
Query: 231 MIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNI 410
MIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSNADEED VALKGNI
Sbjct: 1 MIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNI 60
Query: 411 ETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLE 590
ETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRD+DILIVRENTEGEYSSLE
Sbjct: 61 ETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDIDILIVRENTEGEYSSLE 120
Query: 591 HESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKE 770
HESVAGVVESLKIITKAKSLRIAEYAFKLAQE+GRKKVTAVHKANIMKLGDGLFLQCCKE
Sbjct: 121 HESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCKE 180
Query: 771 VAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXN 950
VAA YP ITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVC N
Sbjct: 181 VAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGAN 240
Query: 951 YGHVYAVFETATRNTGQSIANKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDN 1130
YGHVYAVFETATRNTG+SIANKNIA P + K VLASMDN
Sbjct: 241 YGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDN 300
Query: 1131 ENMHTPDIGGQG 1166
ENMHTPDIGGQG
Sbjct: 301 ENMHTPDIGGQG 312
>ref|XP_867314.1| PREDICTED: similar to Isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial precursor (Isocitric dehydrogenase)
(NAD(+)-specific ICDH) isoform 4 [Canis familiaris].
Length = 343
Score = 485 bits (1249), Expect = e-137
Identities = 258/352 (73%), Positives = 262/352 (74%)
Frame = +3
Query: 111 RPALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 290
RPALLCRPWEVLGAHE PRRS SQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR
Sbjct: 18 RPALLCRPWEVLGAHEVPRRSVSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 77
Query: 291 HACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTS 470
HACVPVDFEEVHVSSNADEED VALKGNIETNHNLPPSHKSRNNILRTS
Sbjct: 78 HACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTS 137
Query: 471 LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 650
LDLYANVIHCKSLPGVVTRHRD+DILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL
Sbjct: 138 LDLYANVIHCKSLPGVVTRHRDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 197
Query: 651 RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM 830
RIAEYAFKLAQE+GRKKVTAVHKANIMKLGDGLFLQCCKEVAA YP ITFENMIVDNTTM
Sbjct: 198 RIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCKEVAARYPQITFENMIVDNTTM 257
Query: 831 QLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIA 1010
Q ATRNTG+SIA
Sbjct: 258 Q-------------------------------------------------ATRNTGKSIA 268
Query: 1011 NKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQG 1166
NKNIA P + K VLASMDNENMHTPDIGGQG
Sbjct: 269 NKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQG 320
>ref|XP_542534.2| PREDICTED: similar to Isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial precursor (Isocitric dehydrogenase)
(NAD(+)-specific ICDH) [Canis familiaris].
Length = 389
Score = 477 bits (1228), Expect = e-135
Identities = 240/352 (68%), Positives = 272/352 (77%), Gaps = 1/352 (0%)
Frame = +3
Query: 111 RPALLCRPWEVLGAHEAPRRSFS-QQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVF 287
RP LCR WE+L HE RSFS + +IPPSAKYGGRHTVTMIPGDGIGPELMLHVK+VF
Sbjct: 20 RPCNLCRSWEILCGHETSPRSFSFKSSIPPSAKYGGRHTVTMIPGDGIGPELMLHVKTVF 79
Query: 288 RHACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRT 467
RHACVPVDFEEV V+ + EED VALKGN+ET+HNLPPSHK RNN+ RT
Sbjct: 80 RHACVPVDFEEVVVNCTSCEEDIHNAIMAVRRNRVALKGNLETDHNLPPSHKCRNNMFRT 139
Query: 468 SLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKS 647
+LDLYANVIH KSLPGV T+H+DVDIL+VRENTEGEYS+LEHESV GV+ESLKIITKAKS
Sbjct: 140 TLDLYANVIHFKSLPGVETQHKDVDILVVRENTEGEYSNLEHESVTGVIESLKIITKAKS 199
Query: 648 LRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTT 827
RIA+YAF+LAQE RKKVT VHKANIMKLGDGLFLQCC+EVA+ YP +TFE MIVDNTT
Sbjct: 200 FRIAQYAFQLAQEMERKKVTVVHKANIMKLGDGLFLQCCREVASHYPQLTFEGMIVDNTT 259
Query: 828 MQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSI 1007
MQLVSRPQQFDVMVMPNLYGNIVN++C NYGH +AVFETA+R + +++
Sbjct: 260 MQLVSRPQQFDVMVMPNLYGNIVNSICTGLVGGAGLVPGANYGHTHAVFETASRQSARNL 319
Query: 1008 ANKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQ 1163
ANKNIA P + VLASM+N+N+HTPDIGGQ
Sbjct: 320 ANKNIANPTAMLLASCIMLDYLQLHSYATSIRAAVLASMENKNVHTPDIGGQ 371
>ref|XP_867307.1| PREDICTED: similar to Isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial precursor (Isocitric dehydrogenase)
(NAD(+)-specific ICDH) isoform 3 [Canis familiaris].
Length = 242
Score = 382 bits (982), Expect = e-106
Identities = 191/207 (92%), Positives = 193/207 (93%)
Frame = +3
Query: 111 RPALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 290
RPALLCRPWEVLGAHE PRRS SQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR
Sbjct: 18 RPALLCRPWEVLGAHEVPRRSVSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 77
Query: 291 HACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTS 470
HACVPVDFEEVHVSSNADEED VALKGNIETNHNLPPSHKSRNNILRTS
Sbjct: 78 HACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTS 137
Query: 471 LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 650
LDLYANVIHCKSLPGVVTRHRD+DILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL
Sbjct: 138 LDLYANVIHCKSLPGVVTRHRDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 197
Query: 651 RIAEYAFKLAQETGRKKVTAVHKANIM 731
RIAEYAFKLAQE+GRKKVTAVHKANIM
Sbjct: 198 RIAEYAFKLAQESGRKKVTAVHKANIM 224
>ref|XP_861581.1| PREDICTED: similar to isocitrate dehydrogenase 3, beta subunit
isoform b precursor isoform 6 [Canis familiaris].
Length = 392
Score = 282 bits (721), Expect = 5e-76
Identities = 163/349 (46%), Positives = 199/349 (57%), Gaps = 7/349 (2%)
Frame = +3
Query: 135 WEVLG----AHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACV 302
W LG AH A R + G VTM+PGDG+GPELM VK VF+ A V
Sbjct: 32 WRNLGTSAVAHAASRSQAEDMRVE------GAFPVTMLPGDGVGPELMHAVKEVFKAASV 85
Query: 303 PVDFEEVHVS---SNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTSL 473
PV+F+E H+S + A EE VA+ G I T S + LR L
Sbjct: 86 PVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKL 145
Query: 474 DLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLR 653
DL+ANV+H KSLPG TRH ++D++I+RE TEGEYSSLEHES GV+E LKI+T+ KS R
Sbjct: 146 DLFANVVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRTKSQR 205
Query: 654 IAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQ 833
IA++AF A + GR KVTAVHKANIMKLGDGLFLQCC+EVA YP I FE MI+DN MQ
Sbjct: 206 IAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQ 265
Query: 834 LVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIAN 1013
LV P QFDV+VMPNLYGNI++N+ +Y YAVFET R+
Sbjct: 266 LVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVG 325
Query: 1014 KNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGG 1160
+NIA P A+ A V + + T D+GG
Sbjct: 326 RNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRTSDMGG 374
>ref|XP_861552.1| PREDICTED: similar to isocitrate dehydrogenase 3, beta subunit
isoform b precursor isoform 5 [Canis familiaris].
Length = 383
Score = 282 bits (721), Expect = 5e-76
Identities = 163/349 (46%), Positives = 199/349 (57%), Gaps = 7/349 (2%)
Frame = +3
Query: 135 WEVLG----AHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACV 302
W LG AH A R + G VTM+PGDG+GPELM VK VF+ A V
Sbjct: 23 WRNLGTSAVAHAASRSQAEDMRVE------GAFPVTMLPGDGVGPELMHAVKEVFKAASV 76
Query: 303 PVDFEEVHVS---SNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTSL 473
PV+F+E H+S + A EE VA+ G I T S + LR L
Sbjct: 77 PVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKL 136
Query: 474 DLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLR 653
DL+ANV+H KSLPG TRH ++D++I+RE TEGEYSSLEHES GV+E LKI+T+ KS R
Sbjct: 137 DLFANVVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRTKSQR 196
Query: 654 IAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQ 833
IA++AF A + GR KVTAVHKANIMKLGDGLFLQCC+EVA YP I FE MI+DN MQ
Sbjct: 197 IAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQ 256
Query: 834 LVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIAN 1013
LV P QFDV+VMPNLYGNI++N+ +Y YAVFET R+
Sbjct: 257 LVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVG 316
Query: 1014 KNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGG 1160
+NIA P A+ A V + + T D+GG
Sbjct: 317 RNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRTSDMGG 365
>ref|XP_534367.2| PREDICTED: similar to isocitrate dehydrogenase 3, beta subunit
isoform a precursor isoform 1 [Canis familiaris].
Length = 385
Score = 281 bits (720), Expect = 7e-76
Identities = 163/349 (46%), Positives = 199/349 (57%), Gaps = 7/349 (2%)
Frame = +3
Query: 135 WEVLG----AHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACV 302
W LG AH A R + G VTM+PGDG+GPELM VK VF+ A V
Sbjct: 23 WRNLGTSAVAHAASRSQAEDMRVE------GAFPVTMLPGDGVGPELMHAVKEVFKAASV 76
Query: 303 PVDFEEVHVS---SNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTSL 473
PV+F+E H+S + A EE VA+ G I T S + LR L
Sbjct: 77 PVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKL 136
Query: 474 DLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLR 653
DL+ANV+H KSLPG TRH ++D++I+RE TEGEYSSLEHES GV+E LKI+T+ KS R
Sbjct: 137 DLFANVVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRTKSQR 196
Query: 654 IAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQ 833
IA++AF A + GR KVTAVHKANIMKLGDGLFLQCC+EVA YP I FE MI+DN MQ
Sbjct: 197 IAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQ 256
Query: 834 LVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIAN 1013
LV P QFDV+VMPNLYGNI++N+ +Y YAVFET R+
Sbjct: 257 LVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVG 316
Query: 1014 KNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGG 1160
+NIA P A+ A V + + T D+GG
Sbjct: 317 RNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRTRDMGG 365
>ref|XP_536213.2| PREDICTED: similar to isocitrate dehydrogenase 3 (NAD+) alpha isoform
1 [Canis familiaris].
Length = 366
Score = 213 bits (542), Expect(2) = 1e-56
Identities = 129/311 (41%), Positives = 176/311 (56%), Gaps = 5/311 (1%)
Frame = +3
Query: 114 PALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRH 293
PA + + +LGA F Q A GG TVT+IPGDGIGPE+ V +F
Sbjct: 4 PAWISKVSRLLGA-------FHNQKQVTRAFAGGVQTVTLIPGDGIGPEISAAVMKIFDA 56
Query: 294 ACVPVDFEEVHVSSNADEEDXXXXXXXXXXXX----VALKGNIETNHNLPPSHKSRNNIL 461
A P+ +EE +V++ + LKG ++T + H S N +L
Sbjct: 57 AKAPIQWEERNVTAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTP--IAAGHPSMNLLL 114
Query: 462 RTSLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKA 641
R + DLYANV C S+ G T + DV+I+ +RENTEGEYS +EH V GVV+S+K+IT+
Sbjct: 115 RKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEE 174
Query: 642 KSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDN 821
S RIAE+AF+ A+ R VTAVHKANIM++ DGLFLQ C+EVA I F M +D
Sbjct: 175 ASRRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDT 234
Query: 822 TTMQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYG-HVYAVFETATRNTG 998
+ +V P QFDV+VMPNLYG+I++++C N G + A+FE + T
Sbjct: 235 VCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFE-SVHGTA 293
Query: 999 QSIANKNIATP 1031
IA K++A P
Sbjct: 294 PDIAGKDMANP 304
Score = 26.2 bits (56), Expect(2) = 1e-56
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 1028 PTATLLASCMMLDHLKLHSYATVIRKA 1108
PTA LL++ MML H+ L +A + A
Sbjct: 304 PTALLLSAVMMLRHMGLFDHAARVEAA 330
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,653,821
Number of extensions: 1194778
Number of successful extensions: 6158
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 6091
Number of HSP's successfully gapped: 25
Length of query: 405
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 300
Effective length of database: 15,374,224
Effective search space: 4612267200
Effective search space used: 4612267200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012343
(1217 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135545.1| PREDICTED: isocitrate dehydrogenase [NAD] su... 591 e-169
Alignment gi|XP_003360543.1| PREDICTED: isocitrate dehydrogenase [NAD] su... 584 e-167
Alignment gi|XP_003135546.1| PREDICTED: isocitrate dehydrogenase [NAD] su... 578 e-165
Alignment gi|XP_003135520.1| PREDICTED: isocitrate dehydrogenase [NAD] su... 567 e-162
Alignment gi|NP_001038040.1| isocitrate dehydrogenase [NAD] subunit beta,... 280 9e-76
Alignment gi|XP_003361645.1| PREDICTED: isocitrate dehydrogenase [NAD] su... 246 1e-65
Alignment gi|XP_001927373.3| PREDICTED: isocitrate dehydrogenase [NAD] su... 211 1e-56
>ref|XP_003135545.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 392
Score = 591 bits (1523), Expect = e-169
Identities = 300/352 (85%), Positives = 302/352 (85%)
Frame = +3
Query: 111 RPALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 290
RPALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR
Sbjct: 18 RPALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 77
Query: 291 HACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTS 470
HACVPVDFEEVHVSSNADEED VALKGNIETNHNLPPSHKSRNNILRTS
Sbjct: 78 HACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTS 137
Query: 471 LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 650
LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL
Sbjct: 138 LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 197
Query: 651 RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM 830
RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM
Sbjct: 198 RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM 257
Query: 831 QLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIA 1010
QLVSRPQQFDVMVMPNLYGNIVNNVC NYGHVYAVFETATRNTG+SIA
Sbjct: 258 QLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIA 317
Query: 1011 NKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQG 1166
NKNIA P + K VLASMDNENMHTPDIGGQG
Sbjct: 318 NKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQG 369
>ref|XP_003360543.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial-like [Sus scrofa].
Length = 398
Score = 584 bits (1506), Expect = e-167
Identities = 300/358 (83%), Positives = 302/358 (84%), Gaps = 6/358 (1%)
Frame = +3
Query: 111 RPALLCRPWEVLGAHEAPRRSFS------QQTIPPSAKYGGRHTVTMIPGDGIGPELMLH 272
RPALLCRPWEVLGAHEAPRRSFS QQTIPPSAKYGGRHTVTMIPGDGIGPELMLH
Sbjct: 18 RPALLCRPWEVLGAHEAPRRSFSVSTCPSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLH 77
Query: 273 VKSVFRHACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRN 452
VKSVFRHACVPVDFEEVHVSSNADEED VALKGNIETNHNLPPSHKSRN
Sbjct: 78 VKSVFRHACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRN 137
Query: 453 NILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKII 632
NILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKII
Sbjct: 138 NILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKII 197
Query: 633 TKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMI 812
TKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMI
Sbjct: 198 TKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMI 257
Query: 813 VDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRN 992
VDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVC NYGHVYAVFETATRN
Sbjct: 258 VDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRN 317
Query: 993 TGQSIANKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQG 1166
TG+SIANKNIA P + K VLASMDNENMHTPDIGGQG
Sbjct: 318 TGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQG 375
>ref|XP_003135546.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 388
Score = 578 bits (1489), Expect = e-165
Identities = 296/352 (84%), Positives = 298/352 (84%)
Frame = +3
Query: 111 RPALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 290
RPALLCRPWEVLGAHEAPRRSFS PPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR
Sbjct: 18 RPALLCRPWEVLGAHEAPRRSFS----PPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 73
Query: 291 HACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTS 470
HACVPVDFEEVHVSSNADEED VALKGNIETNHNLPPSHKSRNNILRTS
Sbjct: 74 HACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTS 133
Query: 471 LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 650
LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL
Sbjct: 134 LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 193
Query: 651 RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM 830
RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM
Sbjct: 194 RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM 253
Query: 831 QLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIA 1010
QLVSRPQQFDVMVMPNLYGNIVNNVC NYGHVYAVFETATRNTG+SIA
Sbjct: 254 QLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIA 313
Query: 1011 NKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQG 1166
NKNIA P + K VLASMDNENMHTPDIGGQG
Sbjct: 314 NKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQG 365
>ref|XP_003135520.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit gamma,
mitochondrial [Sus scrofa].
Length = 450
Score = 567 bits (1462), Expect = e-162
Identities = 290/342 (84%), Positives = 292/342 (85%)
Frame = +3
Query: 141 VLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEE 320
VLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEE
Sbjct: 86 VLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEE 145
Query: 321 VHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHC 500
VHVSSNADEED VALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHC
Sbjct: 146 VHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHC 205
Query: 501 KSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLA 680
KSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLA
Sbjct: 206 KSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLA 265
Query: 681 QETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFD 860
QETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFD
Sbjct: 266 QETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFD 325
Query: 861 VMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIANKNIATPQRR 1040
VMVMPNLYGNIVNNVC NYGHVYAVFETATRNTG+SIANKNIA P
Sbjct: 326 VMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTAT 385
Query: 1041 CSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQG 1166
+ K VLASMDNENMHTPDIGGQG
Sbjct: 386 LLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQG 427
>ref|NP_001038040.1| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [Sus
scrofa].
Length = 385
Score = 280 bits (717), Expect = 9e-76
Identities = 161/351 (45%), Positives = 201/351 (57%), Gaps = 11/351 (3%)
Frame = +3
Query: 141 VLGAHEAPRRSFSQQTIPPSA--------KYGGRHTVTMIPGDGIGPELMLHVKSVFRHA 296
V A+ RS S + +A + G VTM+PGDG+GPELM VK VF+ A
Sbjct: 15 VAAANPGAWRSLSTSVVAQAASRSQAEDVRVEGAFPVTMLPGDGVGPELMHAVKEVFKAA 74
Query: 297 CVPVDFEEVHVS---SNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRT 467
VPV+F+E H+S + A EE VA+ G I T S + LR
Sbjct: 75 SVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRR 134
Query: 468 SLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKS 647
LDL+ANV+H KSLPG +TRH ++D++I+RE TEGEYSSLEHES GV+E LKI+T+ KS
Sbjct: 135 KLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRTKS 194
Query: 648 LRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTT 827
RIA++AF A + GR KVTAVHKANIMKLGDGLFLQCC+EVA YP I FE MI+DN
Sbjct: 195 QRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCC 254
Query: 828 MQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSI 1007
MQLV P QFDV+VMPNLYGNI++N+ +Y YAVFE R+
Sbjct: 255 MQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFEMGARHPFAQA 314
Query: 1008 ANKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGG 1160
+NIA P A+ A V + + T D+GG
Sbjct: 315 VGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRTRDMGG 365
>ref|XP_003361645.1| PREDICTED: isocitrate dehydrogenase [NAD] subunit beta,
mitochondrial-like [Sus scrofa].
Length = 354
Score = 246 bits (629), Expect = 1e-65
Identities = 138/292 (47%), Positives = 171/292 (58%), Gaps = 3/292 (1%)
Frame = +3
Query: 294 ACVPVDFEEVHVS---SNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILR 464
A VPV+F+E H+S + A EE VA+ G I T S + LR
Sbjct: 45 ASVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLR 104
Query: 465 TSLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAK 644
LDL+ANV+H KSLPG +TRH ++D++I+RE TEGEYSSLEHES GV+E LKI+T+ K
Sbjct: 105 RKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRTK 164
Query: 645 SLRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNT 824
S RIA++AF A + GR KVTAVHKANIMKLGDGLFLQCC+EVA YP I FE MI+DN
Sbjct: 165 SQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNC 224
Query: 825 TMQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQS 1004
MQLV P QFDV+VMPNLYGNI++N+ +Y YAVFE R+
Sbjct: 225 CMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFEMGARHPFAQ 284
Query: 1005 IANKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGG 1160
+NIA P A+ A V + + T D+GG
Sbjct: 285 AVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRTSDMGG 336
>ref|XP_001927373.3| PREDICTED: isocitrate dehydrogenase [NAD] subunit alpha,
mitochondrial [Sus scrofa].
Length = 366
Score = 211 bits (538), Expect(2) = 1e-56
Identities = 128/311 (41%), Positives = 175/311 (56%), Gaps = 5/311 (1%)
Frame = +3
Query: 114 PALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRH 293
PA + + +LGA F Q GG TVT+IPGDGIGPE+ V +F
Sbjct: 4 PAWISKVSRLLGA-------FHNQKQVTRGFAGGVKTVTLIPGDGIGPEISAAVMKIFDA 56
Query: 294 ACVPVDFEEVHVSSNADEEDXXXXXXXXXXXX----VALKGNIETNHNLPPSHKSRNNIL 461
A P+ +EE +V++ + LKG ++T + H S N +L
Sbjct: 57 AKAPIQWEERNVTAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTP--IAAGHPSMNLLL 114
Query: 462 RTSLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKA 641
R + DLYANV C S+ G T + DV+I+ +RENTEGEYS +EH V GVV+S+K+IT+
Sbjct: 115 RKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEG 174
Query: 642 KSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDN 821
S RIAE+AF+ A+ R VTAVHKANIM++ DGLFLQ C+EVA I F M +D
Sbjct: 175 ASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDT 234
Query: 822 TTMQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYG-HVYAVFETATRNTG 998
+ +V P QFDV+VMPNLYG+I++++C N G + A+FE + T
Sbjct: 235 VCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFE-SVHGTA 293
Query: 999 QSIANKNIATP 1031
IA K++A P
Sbjct: 294 PDIAGKDMANP 304
Score = 26.9 bits (58), Expect(2) = 1e-56
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 1028 PTATLLASCMMLDHLKLHSYATVIRKA 1108
PTA LL++ MML H+ L +A I A
Sbjct: 304 PTALLLSAVMMLRHMGLFDHAAKIETA 330
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,966,065
Number of extensions: 745744
Number of successful extensions: 3862
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3823
Number of HSP's successfully gapped: 8
Length of query: 405
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,829,335
Effective search space: 2684117840
Effective search space used: 2684117840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012343
(1217 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032349.1| isocitrate dehydrogenase [NAD] subunit gamma 1,... 563 e-160
Alignment gi|NP_766489.1| probable isocitrate dehydrogenase [NAD] gamma 2... 411 e-115
Alignment gi|NP_570954.1| isocitrate dehydrogenase 3, beta subunit [Mus m... 284 1e-76
Alignment gi|NP_083849.1| isocitrate dehydrogenase [NAD] subunit alpha, m... 211 2e-56
>ref|NP_032349.1| isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial
precursor [Mus musculus].
Length = 393
Score = 563 bits (1450), Expect = e-160
Identities = 287/353 (81%), Positives = 296/353 (83%), Gaps = 1/353 (0%)
Frame = +3
Query: 111 RPALLCRPWEVLGAHEAPRRSFS-QQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVF 287
+P LLCRPWEVL AH APRRS S QQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVF
Sbjct: 18 KPTLLCRPWEVLAAHVAPRRSISSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVF 77
Query: 288 RHACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRT 467
RHACVPVDFEEVHVSSNADEED VALKGNIETNHNLPPSHKSRNNILRT
Sbjct: 78 RHACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRT 137
Query: 468 SLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKS 647
SLDLYANVIHCKSLPGVVTRH+D+DILIVRENTEGEYSSLEHESVAGVVESLKIITKAKS
Sbjct: 138 SLDLYANVIHCKSLPGVVTRHKDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKS 197
Query: 648 LRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTT 827
LRIAEYAFKLAQE+GRKKVTAVHKANIMKLGDGLFLQCC+EVAA YP ITF++MIVDNTT
Sbjct: 198 LRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAAHYPQITFDSMIVDNTT 257
Query: 828 MQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSI 1007
MQLVSRPQQFDVMVMPNLYGNIVNNVC NYGHVYAVFETATRNTG+SI
Sbjct: 258 MQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSI 317
Query: 1008 ANKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQG 1166
ANKNIA P + K VLASMDNENMHTPDIGGQG
Sbjct: 318 ANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQG 370
>ref|NP_766489.1| probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial [Mus
musculus].
Length = 396
Score = 411 bits (1056), Expect = e-115
Identities = 205/335 (61%), Positives = 246/335 (73%), Gaps = 1/335 (0%)
Frame = +3
Query: 168 RSF-SQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSNAD 344
RSF S +PPS KYGGRHTV MIPGDGIGPELM+HVK +FR CVPVDFEEV V+S ++
Sbjct: 34 RSFCSHCAVPPSPKYGGRHTVAMIPGDGIGPELMVHVKKIFRSNCVPVDFEEVWVTSTSN 93
Query: 345 EEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVT 524
EE+ VALKGNI TNHNLP +KS N RT LDLYA+V+H K+ PGV+T
Sbjct: 94 EEEINNALMAIRRNRVALKGNIATNHNLPARYKSHNTKFRTILDLYASVVHFKTFPGVMT 153
Query: 525 RHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKV 704
RH+D+DIL+VRENTEGEY++LEHESV GVVESLKI+TK KS+RIA+YAFKLAQ+ GRKKV
Sbjct: 154 RHKDIDILVVRENTEGEYTNLEHESVKGVVESLKIVTKTKSVRIADYAFKLAQKMGRKKV 213
Query: 705 TAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLY 884
T VHKANIMKLGDGLFLQCCK+VAA YP IT E+MI+DNTTMQLVS+PQQFDVMVMPNLY
Sbjct: 214 TVVHKANIMKLGDGLFLQCCKDVAAHYPQITLESMIIDNTTMQLVSKPQQFDVMVMPNLY 273
Query: 885 GNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIANKNIATPQRRCSQAA*CX 1064
GNI+N++C NYG YA+FE ++ G+ +A++NIA P +
Sbjct: 274 GNIINSICTGLVGGSGIVPGANYGDSYAIFEMGSKEIGKDLAHRNIANPVAMLLTSCIML 333
Query: 1065 XXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQGH 1169
V+AS+ N+ + TPDIGGQG+
Sbjct: 334 DYLDLQPYATHIRSAVMASLQNKAVCTPDIGGQGN 368
>ref|NP_570954.1| isocitrate dehydrogenase 3, beta subunit [Mus musculus].
Length = 384
Score = 284 bits (726), Expect = 1e-76
Identities = 163/345 (47%), Positives = 198/345 (57%), Gaps = 3/345 (0%)
Frame = +3
Query: 135 WEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDF 314
W LG A S SQ + G VTM+PGDG+GPELM VK VF+ A VPV+F
Sbjct: 23 WRGLGTSTAHAASQSQAQ---DVRVEGAFPVTMLPGDGVGPELMHAVKEVFKAAAVPVEF 79
Query: 315 EEVHVS---SNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTSLDLYA 485
+E H+S + A EE VA+ G I T S + LR LDL+A
Sbjct: 80 KEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIYTPMEYKGELASYDMQLRRKLDLFA 139
Query: 486 NVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEY 665
NV+H KSLPG TRH ++D++I+RE TEGEYSSLEHES GV+E LKI+T+ KS RIA++
Sbjct: 140 NVVHVKSLPGYKTRHNNLDLVIIREQTEGEYSSLEHESAKGVIECLKIVTRTKSQRIAKF 199
Query: 666 AFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSR 845
AF A + GR KVTAVHKANIMKLGDGLFLQCC+EVA YP I FE MI+DN MQLV
Sbjct: 200 AFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQN 259
Query: 846 PQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIANKNIA 1025
P QFDV+VMPNLYGNI++N+ +Y YAVFET R+ +NIA
Sbjct: 260 PYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIA 319
Query: 1026 TPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGG 1160
P A A V + + T D+GG
Sbjct: 320 NPTAMLLSATNMLRHLNLEYHSSMIADAVKKVIKAGKVRTRDMGG 364
>ref|NP_083849.1| isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial precursor
[Mus musculus].
Length = 366
Score = 211 bits (538), Expect(2) = 2e-56
Identities = 121/279 (43%), Positives = 165/279 (59%), Gaps = 5/279 (1%)
Frame = +3
Query: 210 GGRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVSSNADEEDXXXXXXXXXXXX 389
GG TVT+IPGDGIGPE+ V +F A P+ +EE +V++
Sbjct: 29 GGVQTVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESM 88
Query: 390 ----VALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVR 557
+ LKG ++T + H S N +LR + DLYANV C S+ G T + DV+I+ +R
Sbjct: 89 DKNKMGLKGPLKTP--IAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIR 146
Query: 558 ENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKL 737
ENTEGEYS +EH V GVV+S+K+IT+ S RIAE+AF+ A+ R VTAVHKANIM++
Sbjct: 147 ENTEGEYSGIEHVIVDGVVQSIKLITEEASKRIAEFAFEYARNNHRSNVTAVHKANIMRM 206
Query: 738 GDGLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCXXX 917
DGLFLQ C+EVA I F M +D + +V P QFDV+VMPNLYG+I++++C
Sbjct: 207 SDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGL 266
Query: 918 XXXXXXXXXXNYG-HVYAVFETATRNTGQSIANKNIATP 1031
N G + A+FE + T IA K++A P
Sbjct: 267 IGGLGVTPSGNIGANGVAIFE-SVHGTAPDIAGKDMANP 304
Score = 26.9 bits (58), Expect(2) = 2e-56
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 1028 PTATLLASCMMLDHLKLHSYATVIRKA 1108
PTA LL++ MML H+ L +A I A
Sbjct: 304 PTALLLSAVMMLRHMGLFDHAAKIEAA 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,864,841
Number of extensions: 959554
Number of successful extensions: 4655
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4617
Number of HSP's successfully gapped: 5
Length of query: 405
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 301
Effective length of database: 12,493,815
Effective search space: 3760638315
Effective search space used: 3760638315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012343
(1217 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004126.1| isocitrate dehydrogenase [NAD] subunit gamma, m... 568 e-162
Alignment gi|NP_777358.1| isocitrate dehydrogenase [NAD] subunit gamma, m... 548 e-156
Alignment gi|NP_777280.1| isocitrate dehydrogenase [NAD] subunit beta, mi... 284 1e-76
Alignment gi|NP_008830.2| isocitrate dehydrogenase [NAD] subunit beta, mi... 283 2e-76
Alignment gi|NP_005521.1| isocitrate dehydrogenase [NAD] subunit alpha, m... 214 6e-57
Alignment gi|NP_777281.1| isocitrate dehydrogenase [NAD] subunit beta, mi... 167 2e-41
>ref|NP_004126.1| isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform a
precursor [Homo sapiens].
Length = 393
Score = 568 bits (1463), Expect = e-162
Identities = 289/352 (82%), Positives = 297/352 (84%), Gaps = 1/352 (0%)
Frame = +3
Query: 114 PALLCRPWEVLGAHEAPRRS-FSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 290
PALLCRPWEVLGAHE P R+ FS+QTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR
Sbjct: 19 PALLCRPWEVLGAHEVPSRNIFSEQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 78
Query: 291 HACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTS 470
HACVPVDFEEVHVSSNADEED VALKGNIETNHNLPPSHKSRNNILRTS
Sbjct: 79 HACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTS 138
Query: 471 LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 650
LDLYANVIHCKSLPGVVTRH+D+DILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL
Sbjct: 139 LDLYANVIHCKSLPGVVTRHKDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 198
Query: 651 RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM 830
RIAEYAFKLAQE+GRKKVTAVHKANIMKLGDGLFLQCC+EVAA YP ITFENMIVDNTTM
Sbjct: 199 RIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTM 258
Query: 831 QLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIA 1010
QLVSRPQQFDVMVMPNLYGNIVNNVC NYGHVYAVFETATRNTG+SIA
Sbjct: 259 QLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIA 318
Query: 1011 NKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTPDIGGQG 1166
NKNIA P + K VLASMDNENMHTPDIGGQG
Sbjct: 319 NKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQG 370
>ref|NP_777358.1| isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform b
precursor [Homo sapiens].
Length = 380
Score = 548 bits (1411), Expect = e-156
Identities = 280/346 (80%), Positives = 289/346 (83%), Gaps = 1/346 (0%)
Frame = +3
Query: 114 PALLCRPWEVLGAHEAPRRS-FSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 290
PALLCRPWEVLGAHE P R+ FS+QTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR
Sbjct: 19 PALLCRPWEVLGAHEVPSRNIFSEQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFR 78
Query: 291 HACVPVDFEEVHVSSNADEEDXXXXXXXXXXXXVALKGNIETNHNLPPSHKSRNNILRTS 470
HACVPVDFEEVHVSSNADEED VALKGNIETNHNLPPSHKSRNNILRTS
Sbjct: 79 HACVPVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTS 138
Query: 471 LDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 650
LDLYANVIHCKSLPGVVTRH+D+DILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL
Sbjct: 139 LDLYANVIHCKSLPGVVTRHKDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSL 198
Query: 651 RIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDNTTM 830
RIAEYAFKLAQE+GRKKVTAVHKANIMKLGDGLFLQCC+EVAA YP ITFENMIVDNTTM
Sbjct: 199 RIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTM 258
Query: 831 QLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYGHVYAVFETATRNTGQSIA 1010
QLVSRPQQFDVMVMPNLYGNIVNNVC NYGHVYAVFETATRNTG+SIA
Sbjct: 259 QLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIA 318
Query: 1011 NKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNENMHTP 1148
NKNIA P + K VLASMDNEN+ P
Sbjct: 319 NKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENVRFP 364
>ref|NP_777280.1| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform b
precursor [Homo sapiens].
Length = 383
Score = 284 bits (726), Expect = 1e-76
Identities = 157/319 (49%), Positives = 193/319 (60%), Gaps = 3/319 (0%)
Frame = +3
Query: 213 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDXXXXXXXXXX 383
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE
Sbjct: 47 GSFPVTMLPGDGVGPELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 106
Query: 384 XXVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVREN 563
VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 107 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 166
Query: 564 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGD 743
TEGEYSSLEHES GV+E LKI+T+AKS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 167 TEGEYSSLEHESARGVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGD 226
Query: 744 GLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXX 923
GLFLQCC+EVA YP I FE MI+DN MQLV P QFDV+VMPNLYGNI++N+
Sbjct: 227 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVG 286
Query: 924 XXXXXXXXNYGHVYAVFETATRNTGQSIANKNIATPQRRCSQAA*CXXXXXXXXXXXXFA 1103
+Y YAVFET R+ +NIA P A+ A
Sbjct: 287 GAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIA 346
Query: 1104 KPVLASMDNENMHTPDIGG 1160
V + + T D+GG
Sbjct: 347 DAVKKVIKVGKVRTSDMGG 365
>ref|NP_008830.2| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform a
precursor [Homo sapiens].
Length = 385
Score = 283 bits (725), Expect = 2e-76
Identities = 157/319 (49%), Positives = 193/319 (60%), Gaps = 3/319 (0%)
Frame = +3
Query: 213 GRHTVTMIPGDGIGPELMLHVKSVFRHACVPVDFEEVHVS---SNADEEDXXXXXXXXXX 383
G VTM+PGDG+GPELM VK VF+ A VPV+F+E H+S + A EE
Sbjct: 47 GSFPVTMLPGDGVGPELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKE 106
Query: 384 XXVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPGVVTRHRDVDILIVREN 563
VA+ G I T S + LR LDL+ANV+H KSLPG +TRH ++D++I+RE
Sbjct: 107 NKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQ 166
Query: 564 TEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGD 743
TEGEYSSLEHES GV+E LKI+T+AKS RIA++AF A + GR KVTAVHKANIMKLGD
Sbjct: 167 TEGEYSSLEHESARGVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGD 226
Query: 744 GLFLQCCKEVAAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXX 923
GLFLQCC+EVA YP I FE MI+DN MQLV P QFDV+VMPNLYGNI++N+
Sbjct: 227 GLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVG 286
Query: 924 XXXXXXXXNYGHVYAVFETATRNTGQSIANKNIATPQRRCSQAA*CXXXXXXXXXXXXFA 1103
+Y YAVFET R+ +NIA P A+ A
Sbjct: 287 GAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIA 346
Query: 1104 KPVLASMDNENMHTPDIGG 1160
V + + T D+GG
Sbjct: 347 DAVKKVIKVGKVRTRDMGG 365
>ref|NP_005521.1| isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial precursor
[Homo sapiens].
Length = 366
Score = 214 bits (544), Expect(2) = 6e-57
Identities = 128/311 (41%), Positives = 177/311 (56%), Gaps = 5/311 (1%)
Frame = +3
Query: 114 PALLCRPWEVLGAHEAPRRSFSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRH 293
PA + + +LGA P++ T GG TVT+IPGDGIGPE+ V +F
Sbjct: 4 PAWISKVSRLLGAFHNPKQVTRGFT-------GGVQTVTLIPGDGIGPEISAAVMKIFDA 56
Query: 294 ACVPVDFEEVHVSSNADEEDXXXXXXXXXXXX----VALKGNIETNHNLPPSHKSRNNIL 461
A P+ +EE +V++ + LKG ++T + H S N +L
Sbjct: 57 AKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTP--IAAGHPSMNLLL 114
Query: 462 RTSLDLYANVIHCKSLPGVVTRHRDVDILIVRENTEGEYSSLEHESVAGVVESLKIITKA 641
R + DLYANV C S+ G T + DV+I+ +RENTEGEYS +EH V GVV+S+K+IT+
Sbjct: 115 RKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEG 174
Query: 642 KSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEVAAGYPHITFENMIVDN 821
S RIAE+AF+ A+ R VTAVHKANIM++ DGLFLQ C+EVA I F M +D
Sbjct: 175 ASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAESCKDIKFNEMYLDT 234
Query: 822 TTMQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNYG-HVYAVFETATRNTG 998
+ +V P QFDV+VMPNLYG+I++++C N G + A+FE + T
Sbjct: 235 VCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFE-SVHGTA 293
Query: 999 QSIANKNIATP 1031
IA K++A P
Sbjct: 294 PDIAGKDMANP 304
Score = 26.6 bits (57), Expect(2) = 6e-57
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 1028 PTATLLASCMMLDHLKLHSYATVIRKA 1108
PTA LL++ MML H+ L +A I A
Sbjct: 304 PTALLLSAVMMLRHMGLFDHAARIEAA 330
>ref|NP_777281.1| isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform c
[Homo sapiens].
Length = 233
Score = 167 bits (422), Expect = 2e-41
Identities = 91/189 (48%), Positives = 111/189 (58%)
Frame = +3
Query: 594 ESVAGVVESLKIITKAKSLRIAEYAFKLAQETGRKKVTAVHKANIMKLGDGLFLQCCKEV 773
+S GV+E LKI+T+AKS RIA++AF A + GR KVTAVHKANIMKLGDGLFLQCC+EV
Sbjct: 25 QSARGVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEV 84
Query: 774 AAGYPHITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCXXXXXXXXXXXXXNY 953
A YP I FE MI+DN MQLV P QFDV+VMPNLYGNI++N+ +Y
Sbjct: 85 AELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESY 144
Query: 954 GHVYAVFETATRNTGQSIANKNIATPQRRCSQAA*CXXXXXXXXXXXXFAKPVLASMDNE 1133
YAVFET R+ +NIA P A+ A V +
Sbjct: 145 SAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVG 204
Query: 1134 NMHTPDIGG 1160
+ T D+GG
Sbjct: 205 KVRTRDMGG 213
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,626,051
Number of extensions: 1159999
Number of successful extensions: 5972
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5908
Number of HSP's successfully gapped: 7
Length of query: 405
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,835,944
Effective search space: 4450783200
Effective search space used: 4450783200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012343
(1217 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 301 5e-79
>Sscrofa_ChrX
|| Length = 144288218
Score = 301 bits (152), Expect = 5e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 830 gcagctggtgtcccggccgcagcagttcgacgtcatggtgatgcccaacctctacggcaa 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094703 gcagctggtgtcccggccgcagcagttcgacgtcatggtgatgcccaacctctacggcaa 142094644
Query: 890 catcgtcaacaacgtctgcgcgggcctggtgggcggccccgggctcgtggcgggggccaa 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094643 catcgtcaacaacgtctgcgcgggcctggtgggcggccccgggctcgtggcgggggccaa 142094584
Query: 950 ctacgggcacgtgtacgccgtcttcgagaccg 981
||||||||||||||||||||||||||||||||
Sbjct: 142094583 ctacgggcacgtgtacgccgtcttcgagaccg 142094552
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 595 agagcgtggcaggagtggtggagagcctcaagatcatcaccaaggccaagtccctgcgca 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142095211 agagcgtggcaggagtggtggagagcctcaagatcatcaccaaggccaagtccctgcgca 142095152
Query: 655 tcgccgagtacgccttcaaactggcccaggagacggggcgcaagaaagtgacggctgtgc 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142095151 tcgccgagtacgccttcaaactggcccaggagacggggcgcaagaaagtgacggctgtgc 142095092
Query: 715 acaaggccaacatcatg 731
|||||||||||||||||
Sbjct: 142095091 acaaggccaacatcatg 142095075
Score = 270 bits (136), Expect = 2e-69
Identities = 139/140 (99%)
Strand = Plus / Minus
Query: 3 actctcgcgagagtggcttttgagggtcgagacctgctgcggttctcactttctgtcatg 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142102020 actctcgcgagagtggcatttgagggtcgagacctgctgcggttctcactttctgtcatg 142101961
Query: 63 gcgctgaaggtggcgacggctgcaggcggcgcggcgaaggcagtgctcaggccagccctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142101960 gcgctgaaggtggcgacggctgcaggcggcgcggcgaaggcagtgctcaggccagccctc 142101901
Query: 123 ctctgccgtccctgggaggt 142
||||||||||||||||||||
Sbjct: 142101900 ctctgccgtccctgggaggt 142101881
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 463 gcaccagcctggacctctatgccaacgtcatccactgcaagagcctgcccggcgtcgtca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142095433 gcaccagcctggacctctatgccaacgtcatccactgcaagagcctgcccggcgtcgtca 142095374
Query: 523 cgcggcacagggacgtcgacatcctcatcgtccgggagaacacggagggcgagtacagca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142095373 cgcggcacagggacgtcgacatcctcatcgtccgggagaacacggagggcgagtacagca 142095314
Query: 583 gcctggagcacgag 596
||||||||||||||
Sbjct: 142095313 gcctggagcacgag 142095300
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 287 caggcatgcgtgtgtgcctgtggacttcgaagaggtgcatgtgagctccaacgccgacga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142097130 caggcatgcgtgtgtgcctgtggacttcgaagaggtgcatgtgagctccaacgccgacga 142097071
Query: 347 ggaggacatccggaatgccatcatggccatccgtcggaaccgtgtggctctaaaggg 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142097070 ggaggacatccggaatgccatcatggccatccgtcggaaccgtgtggctctaaaggg 142097014
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 731 gaagctgggcgatgggctcttcctccagtgctgcaaggaggtggcggccggttaccccca 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094889 gaagctgggcgatgggctcttcctccagtgctgcaaggaggtggcggccggttaccccca 142094830
Query: 791 catcaccttcgagaacatgatcgtagacaacaccaccatgcag 833
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142094829 catcaccttcgagaacatgatcgtagacaacaccaccatgcag 142094787
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 192 cctccgtcggccaagtatggggggcggcacacggtgaccatgatcccgggggatggcatc 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142097528 cctccgtcggccaagtatggggggcggcacacggtgaccatgatcccgggggatggcatc 142097469
Query: 252 gggccggagctcatgctgcatgtcaagtctgtgttcagg 290
|||||||||||||||||||||||||||||||||||||||
Sbjct: 142097468 gggccggagctcatgctgcatgtcaagtctgtgttcagg 142097430
Score = 167 bits (84), Expect = 2e-38
Identities = 94/96 (97%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 981 gctacgaggaacacaggccagagcatcgccaacaagaacattgcca-ccccacagcgacg 1039
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 142093959 gctacgaggaacacaggcaagagcatcgccaacaagaacattgccaaccccacagcgacg 142093900
Query: 1040 ctgctcgcaagctgcatgatgctcgaccacctcaag 1075
||||||||||||||||||||||||||||||||||||
Sbjct: 142093899 ctgctcgcaagctgcatgatgctcgaccacctcaag 142093864
Score = 137 bits (69), Expect = 2e-29
Identities = 79/81 (97%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 1137 atgcacacgccagacatcgggggccaggggcacgacgtcggaagtcatccaggacatcat 1196
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 142093435 atgcacacgccagacatcgggggccaggg-cacgacgtcggaagccatccaggacatcat 142093377
Query: 1197 tcgccacatccgcatcatcaa 1217
|||||||||||||||||||||
Sbjct: 142093376 tcgccacatccgcatcatcaa 142093356
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 402 ggcaatattgaaacaaaccacaacctgccgccgtcgcacaagtcccggaacaacatcctc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142095584 ggcaatattgaaacaaaccacaacctgccgccgtcgcacaagtcccggaacaacatcctc 142095525
Query: 462 cg 463
||
Sbjct: 142095524 cg 142095523
Score = 81.8 bits (41), Expect = 8e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 139 aggttctaggtgcccacgaggccccccggaggagcttctct 179
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 142098012 aggttctaggtgcccacgaggccccccggaggagcttctct 142097972
Score = 75.8 bits (38), Expect = 5e-11
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 1059 tgctcgaccacctcaagctccactcctacgccaccgtcattcgcaaagcccgtcttggcg 1118
|||||| || ||||| |||||||||||||||||| ||| ||||| ||| |||||||||
Sbjct: 142093799 tgctcgtcctcctcaggctccactcctacgccacgtccatccgcaaggcc-gtcttggcg 142093741
Query: 1119 tccatggacaacgaaaac 1136
||||||||||||||||||
Sbjct: 142093740 tccatggacaacgaaaac 142093723
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,126,078
Number of extensions: 103
Number of successful extensions: 103
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 12
Length of query: 1217
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1196
Effective length of database: 2,808,413,156
Effective search space: 3358862134576
Effective search space used: 3358862134576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)