Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012371
(1519 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030403.1| lysosomal protective protein precursor [Bos ... 795 0.0
Alignment gi|XP_614314.5| PREDICTED: serine carboxypeptidase vitellogenic... 141 1e-33
Alignment gi|XP_002686918.1| PREDICTED: Carboxypeptidase, vitellogenic-li... 130 3e-30
Alignment gi|NP_001039374.1| serine carboxypeptidase 1 precursor protein ... 70 6e-14
>ref|NP_001030403.1| lysosomal protective protein precursor [Bos taurus].
Length = 479
Score = 795 bits (2052), Expect(2) = 0.0
Identities = 375/423 (88%), Positives = 402/423 (95%)
Frame = +1
Query: 115 APRSQAAADKDEIQCLPGLAKQPSFRQYSGYLRGSGSKHLHYWFVESQKDPKSSPVVLWL 294
AP + A D+DEI+ LPGLAKQPSFRQYSGYL+GSGSK LHYWFVESQKDPKSSPVVLWL
Sbjct: 22 APGGEGAHDQDEIRFLPGLAKQPSFRQYSGYLKGSGSKRLHYWFVESQKDPKSSPVVLWL 81
Query: 295 NGGPGCSSLDGLLTEHGPFLVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSY 474
NGGPGCSSLDGLLTEHGPFL+QPDG TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSY
Sbjct: 82 NGGPGCSSLDGLLTEHGPFLIQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSY 141
Query: 475 ATNDTEVAQSNYEALKDFFRLFPEYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGL 654
ATNDTEVAQSN+EALKDFF LFPEYK NELFLTGESYAGIYIPTLAVLVMQDPSMNLQGL
Sbjct: 142 ATNDTEVAQSNFEALKDFFCLFPEYKGNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGL 201
Query: 655 AVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQE 834
AVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQN+CNF+DNK+P+CV +LQE
Sbjct: 202 AVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNQCNFHDNKEPECVANLQE 261
Query: 835 VSHIVSSSGLNIYNLYAPCAGGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSE 1014
VSHIV+SSGLNIYNLYAPCAGGVPSH+++EKDT+VV DLGNIFTRLPLKR+WHQTLLRS
Sbjct: 262 VSHIVASSGLNIYNLYAPCAGGVPSHVRHEKDTVVVQDLGNIFTRLPLKRVWHQTLLRSG 321
Query: 1015 GRANLDPPCTNTTAASTYLNNPYVRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYL 1194
+ +LDPPCTNTTAAS YLN+P+VRKALHIPEQLP+WD+CNFLVNIQYRRLYQSM SQYL
Sbjct: 322 EKVHLDPPCTNTTAASNYLNDPHVRKALHIPEQLPRWDLCNFLVNIQYRRLYQSMCSQYL 381
Query: 1195 KLLTPQKYRILLYNGDVDMACNFMGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAGFVK 1374
KLL+ QKYRILLYNGDVDMACNFMGDEWFV +QKMEVQRRPW+VDY +SGEQIAGFVK
Sbjct: 382 KLLSAQKYRILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVDYGESGEQIAGFVK 441
Query: 1375 EFS 1383
EFS
Sbjct: 442 EFS 444
Score = 63.2 bits (152), Expect(2) = 0.0
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +3
Query: 1383 HIAFLTIKGAGHMXPHRQPXAALTMFSRFLNKQPY 1487
HIAFLTIKGAGHM P +P AALTMFSRFLN+QPY
Sbjct: 445 HIAFLTIKGAGHMVPTDKPQAALTMFSRFLNRQPY 479
>ref|XP_614314.5| PREDICTED: serine carboxypeptidase vitellogenic-like [Bos taurus].
Length = 528
Score = 141 bits (356), Expect = 1e-33
Identities = 111/415 (26%), Positives = 194/415 (46%), Gaps = 21/415 (5%)
Frame = +1
Query: 196 YSGYL--RGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDG 369
YSGY+ + + ++ +WF ++ +P+++PVVLWL GGPG SS+ GL EHGP++V +
Sbjct: 128 YSGYITVNKTYNSNIFFWFFPAKIEPQNAPVVLWLQGGPGGSSMFGLFVEHGPYIVSKN- 186
Query: 370 ATLEYNPYSWNLIANVLYLESPAGVGFSYSDD-KSYATNDTEVAQSNYEALKDFFRLFPE 546
TL + W + ++LY+++P G GFS++D YA ++ +VA++ Y AL FF LF +
Sbjct: 187 MTLFARDFPWTITFSMLYVDNPVGTGFSFTDHVHGYAIDEDDVARNLYSALIQFFELFSD 246
Query: 547 YKDNELFLTGESYAGIYIPTLAVLV-----MQDPSMNLQGLAVGNGLSSYEQNDNSLVYF 711
Y+DN+ ++TGESYAG Y+P +A + + +NL+G+A+G+ + F
Sbjct: 247 YRDNDFYVTGESYAGKYVPAIAHYIHILNPVTTMKINLKGIALGDAYFDPKSIIEGYPSF 306
Query: 712 AYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSSGLNIYNLYAPC 891
+ GLL Q Q +CN DCV +++ + + L+
Sbjct: 307 LFQIGLLDE------QEKKYFQKQCN-------DCVKFIRQEKWLQAFELLD-----RLL 348
Query: 892 AGGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTY- 1068
GG+ S Y ++ + N+ CT Y
Sbjct: 349 DGGLISEPSYFQNVTGCSNYYNLLL------------------------CTEPEDQGYYG 384
Query: 1069 --LNNPYVRKALHIPEQLPQWDMCNFLVNIQYRR-LYQSMYSQYLKLLTP--QKYRILLY 1233
L+ P+VR+A+H+ Q F + + L + LT Y++L+Y
Sbjct: 385 KFLSLPHVRQAIHVGNQ-------TFSDGAKVEKYLREDTVKSVKPWLTEIMNNYKVLIY 437
Query: 1234 NGDVDMAC-------NFMGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAGFVKE 1377
NG +D+ + M +W ++K ++ W + S ++AG+V++
Sbjct: 438 NGQLDVIVAASLTERSLMAMDWKGSQKYKK--AGKKVWKI--LKSDPEVAGYVRQ 488
>ref|XP_002686918.1| PREDICTED: Carboxypeptidase, vitellogenic-like [Bos taurus].
Length = 421
Score = 130 bits (327), Expect = 3e-30
Identities = 105/391 (26%), Positives = 180/391 (46%), Gaps = 19/391 (4%)
Frame = +1
Query: 262 DPKSSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGATLEYNPYSWNLIANVLYLESPAG 441
+P+++PVVLWL GGPG SS+ GL EHGP++V + TL + W + ++LY+++P G
Sbjct: 45 EPQNAPVVLWLQGGPGGSSMFGLFVEHGPYIVSKN-MTLFARDFPWTITFSMLYVDNPVG 103
Query: 442 VGFSYSDD-KSYATNDTEVAQSNYEALKDFFRLFPEYKDNELFLTGESYAGIYIPTLAVL 618
GFS++D YA ++ +VA++ Y AL FF LF +Y+DN+ ++TGESYAG Y+P +A
Sbjct: 104 TGFSFTDHVHGYAIDEDDVARNLYSALIQFFELFSDYRDNDFYVTGESYAGKYVPAIAHY 163
Query: 619 V-----MQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNK 783
+ + +NL+G+A+G+ + F + GLL Q Q +
Sbjct: 164 IHILNPVTTMKINLKGIALGDAYFDPKSIIEGYPSFLFQIGLLDE------QEKKYFQKQ 217
Query: 784 CNFYDNKDPDCVTSLQEVSHIVSSSGLNIYNLYAPCAGGVPSHLKYEKDTIVVPDLGNIF 963
CN DCV +++ + + L+ GG+ S Y ++ + N+
Sbjct: 218 CN-------DCVKFIRQEKWLQAFELLD-----RLLDGGLISEPSYFQNVTGCSNYYNLL 265
Query: 964 TRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTY---LNNPYVRKALHIPEQLPQWDMC 1134
CT Y L+ P+VR+A+H+ Q
Sbjct: 266 L------------------------CTEPEDQGYYGKFLSLPHVRQAIHVGNQ------- 294
Query: 1135 NFLVNIQYRR-LYQSMYSQYLKLLTP--QKYRILLYNGDVDMAC-------NFMGDEWFV 1284
F + + L + LT Y++L+YNG +D+ + M +W
Sbjct: 295 TFSDGAKVEKYLREDTVKSVKPWLTEIMNNYKVLIYNGQLDVIVAASLTERSLMAMDWKG 354
Query: 1285 XFPHQKMEVQRRPWVVDYXDSGEQIAGFVKE 1377
++K ++ W + S ++AG+V++
Sbjct: 355 SQKYKK--AGKKVWKI--LKSDPEVAGYVRQ 381
>ref|NP_001039374.1| serine carboxypeptidase 1 precursor protein [Bos taurus].
Length = 448
Score = 69.7 bits (169), Expect(2) = 6e-14
Identities = 87/373 (23%), Positives = 151/373 (40%), Gaps = 15/373 (4%)
Frame = +1
Query: 202 GYLRGSGSKHLHYWF---VESQKDPKSSPVVLWLNGGPGCSSLD-GLLTEHGPFLVQPDG 369
GY+ H+ +W S K+ P+++WL GGPG SS G E GP
Sbjct: 37 GYVTVRKDAHMFWWLYYATSSHKNFSELPLIMWLQGGPGGSSTGFGNFEEIGPL-----D 91
Query: 370 ATLEYNPYSWNLIANVLYLESPAGVGFSY-SDDKSYATNDTEVAQSNYEALKDFFRLFPE 546
L+ +W A++L++++P G GFSY + +YA + V LK FF E
Sbjct: 92 RNLQPRNTTWLQSASLLFVDNPVGAGFSYVNKTDAYARDLATVVSDMIFLLKSFFDFHKE 151
Query: 547 YKDNELFLTGESY-----AGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYF 711
++ ++ ESY AGI + + + N G+A+G+ S + S +
Sbjct: 152 FERIPFYIFSESYGGKMAAGIALELYKAVQQKTIQCNFAGVALGDAWISPIDSVLSWGPY 211
Query: 712 AYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIV---SSSGLNIYNLY 882
Y LL ++ + + ++ + + T L E + +V ++ G+N YN+
Sbjct: 212 LYSVSLLDDQGLAEVSN--VAEEVLDALSKELYQEATRLWEKAEMVIEQNTDGVNFYNIL 269
Query: 883 --APCAGGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTA 1056
+ V S+L++ + +V ++F R H L+ DP
Sbjct: 270 TKSSSVSRVVSNLEFTQKHLV-----HLFQR-------HVRQLQQ------DP------- 304
Query: 1057 ASTYLNNPYVRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLTPQKYRILLYN 1236
S +N P +K IPE W +V + + + L + +YN
Sbjct: 305 LSQLMNGPIRKKLRIIPEDC-IWGGQAPIVFLNMEGDFMKPVISIVDELLEAGVSVTVYN 363
Query: 1237 GDVDMACNFMGDE 1275
G +D+ + MG E
Sbjct: 364 GQLDLIVDTMGQE 376
Score = 26.9 bits (58), Expect(2) = 6e-14
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 1383 HIAFLTIKGAGHMXPHRQPXAALTM 1457
++AF I AGHM P QP AL M
Sbjct: 416 NLAFYWILRAGHMVPSDQPDMALKM 440
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,081,337
Number of extensions: 1829912
Number of successful extensions: 8578
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8508
Number of HSP's successfully gapped: 6
Length of query: 506
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 399
Effective length of database: 14,140,958
Effective search space: 5642242242
Effective search space used: 5642242242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012371
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012371
(1519 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103385.1| lysosomal protective protein [Canis lupus fa... 843 0.0
Alignment gi|XP_854245.1| PREDICTED: similar to serine carboxypeptidase v... 162 8e-40
Alignment gi|XP_537688.2| PREDICTED: similar to serine carboxypeptidase 1... 65 2e-10
>ref|NP_001103385.1| lysosomal protective protein [Canis lupus familiaris].
Length = 499
Score = 843 bits (2177), Expect(2) = 0.0
Identities = 405/464 (87%), Positives = 420/464 (90%), Gaps = 4/464 (0%)
Frame = +1
Query: 4 MTSRPGAPPEEQGRGGAEMVRAAXXXXXXXXXXXXX----WAPRSQAAADKDEIQCLPGL 171
MT R APP EQGRGG EMVRAA WAP QAA D DEIQCLPGL
Sbjct: 1 MTFRGRAPPGEQGRGGDEMVRAAPSPPWLLRLLLLLLLLLWAPPGQAAPDLDEIQCLPGL 60
Query: 172 AKQPSFRQYSGYLRGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPF 351
AKQP+FRQYSGYLRGSG KHLHYWFVESQKDPKSSP+VLWLNGGPGCSSLDG LTEHGPF
Sbjct: 61 AKQPAFRQYSGYLRGSGPKHLHYWFVESQKDPKSSPLVLWLNGGPGCSSLDGFLTEHGPF 120
Query: 352 LVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSYATNDTEVAQSNYEALKDFF 531
LVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDK+YATNDTEVAQSNYEALKDFF
Sbjct: 121 LVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKTYATNDTEVAQSNYEALKDFF 180
Query: 532 RLFPEYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYF 711
RLFPEYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYF
Sbjct: 181 RLFPEYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYF 240
Query: 712 AYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSSGLNIYNLYAPC 891
AYYHGLLGNRLWSSLQTHCCSQNKCNFYDN DP+CVT+LQEVS IV +SGLNIYNLYAPC
Sbjct: 241 AYYHGLLGNRLWSSLQTHCCSQNKCNFYDNTDPECVTNLQEVSRIVGNSGLNIYNLYAPC 300
Query: 892 AGGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTYL 1071
AGGVP HL+YEKDT+V+ DLGNIFTRLP KR+WHQ LLRS+ R +DPPCTNTTAASTYL
Sbjct: 301 AGGVPGHLRYEKDTVVLHDLGNIFTRLPFKRVWHQALLRSDDRLRMDPPCTNTTAASTYL 360
Query: 1072 NNPYVRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLTPQKYRILLYNGDVDM 1251
NNPYVRKALHIPEQLP+WDMCNFLVNIQYRRLYQSM SQYLKLLT QKYRILLYNGDVDM
Sbjct: 361 NNPYVRKALHIPEQLPRWDMCNFLVNIQYRRLYQSMQSQYLKLLTTQKYRILLYNGDVDM 420
Query: 1252 ACNFMGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAGFVKEFS 1383
ACNFMGDEWFV +QKMEVQRRPW+VDY DSGEQIAGFVKEFS
Sbjct: 421 ACNFMGDEWFVDSLNQKMEVQRRPWLVDYGDSGEQIAGFVKEFS 464
Score = 64.3 bits (155), Expect(2) = 0.0
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 1383 HIAFLTIKGAGHMXPHRQPXAALTMFSRFLNKQPY 1487
HIAFLTIKGAGHM P +P AALTMFSRFLNKQPY
Sbjct: 465 HIAFLTIKGAGHMVPTDKPQAALTMFSRFLNKQPY 499
>ref|XP_854245.1| PREDICTED: similar to serine carboxypeptidase vitellogenic-like
[Canis familiaris].
Length = 479
Score = 162 bits (410), Expect = 8e-40
Identities = 126/444 (28%), Positives = 202/444 (45%), Gaps = 23/444 (5%)
Frame = +1
Query: 115 APRSQAAADKDEIQCLPGLAKQPSFRQYSGYL--RGSGSKHLHYWFVESQKDPKSSPVVL 288
A + + A K + GL + + Y+GY+ + + +L +WF +Q DP +PVVL
Sbjct: 54 AGKLKEAKTKSLVTAFSGL----NVKSYAGYITVNKTYNSNLFFWFFPAQVDPAIAPVVL 109
Query: 289 WLNGGPGCSSLDGLLTEHGPFLVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDD- 465
WL GGPG SS+ GL EHGPF V + TL + W ++LY+++P G GFS++
Sbjct: 110 WLQGGPGGSSMFGLFVEHGPFFVTSN-MTLRARDFPWTTTLSMLYVDNPVGTGFSFTTSP 168
Query: 466 KSYATNDTEVAQSNYEALKDFFRLFPEYKDNELFLTGESYAGIYIPTLAVLV-------M 624
+ YA N+ +VA++ Y AL FF LFPEYKDN+ + TGESYAG Y+P LA + M
Sbjct: 169 QGYAVNEDDVARNLYSALVQFFLLFPEYKDNDFYATGESYAGKYVPALAHYIHILNPNPM 228
Query: 625 QDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNK 804
+NL+G+A+G+ S E F Y GLL + Q C DN
Sbjct: 229 MSMKINLKGIALGDAYSDPESIIEGYATFLYQIGLLDEKQRKYFQKQC---------DN- 278
Query: 805 DPDCVTSLQEVSHIVSSSGLNIYNLYAPCAGGVPSHLKYEKDTIVVPDLGNIFTRLPLKR 984
CV ++E + + L+ G ++ Y ++ P NI + +
Sbjct: 279 ---CVKYIKEEKWLKAFEILD-----RLLDGDFTNNPSYFQNVTGCPSYYNILQCMEAE- 329
Query: 985 IWHQTLLRSEGRANLDPPCTNTTAASTYLNNPYVRKALHIPEQLPQWDMCNFLVNIQYRR 1164
+ T+L+ P VR+A+H+ Q F + +
Sbjct: 330 --------------------DQNYYGTFLSLPQVRQAIHVGNQ-------TFSDGSEVEK 362
Query: 1165 LYQSMYSQYLKLLTP------QKYRILLYNGDVDMAC-------NFMGDEWFVXFPHQKM 1305
M +K + P Y++L+YNG +D+ + M +W +
Sbjct: 363 Y---MREDTVKTVKPWLAEIMNNYKVLIYNGQLDIIVAASLTERSLMAMKW--KGSQKYN 417
Query: 1306 EVQRRPWVVDYXDSGEQIAGFVKE 1377
+ +R+ W + DS ++AG+V++
Sbjct: 418 QAERKVWKIFKSDS--EVAGYVRQ 439
>ref|XP_537688.2| PREDICTED: similar to serine carboxypeptidase 1 precursor protein
[Canis familiaris].
Length = 477
Score = 64.7 bits (156), Expect = 2e-10
Identities = 92/407 (22%), Positives = 164/407 (40%), Gaps = 23/407 (5%)
Frame = +1
Query: 229 HLHYWFVESQKDPKSS---PVVLWLNGGPGCSSLD-GLLTEHGPFLVQPDGATLEYNPYS 396
H+ +W + K+ P+V+WL GGPG SS G E GP + L+ +
Sbjct: 75 HMFWWLYYATNPCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPL-----DSDLKPRRTT 129
Query: 397 WNLIANVLYLESPAGVGFSY-SDDKSYATNDTEVAQSNYEALKDFFRLFPEYKDNELFLT 573
W A++L++++P G GFSY + +YA + VA LK FF E++ ++
Sbjct: 130 WLQSASLLFVDNPVGTGFSYVNKSDAYAKDLATVASDMMVLLKTFFDCHKEFQTIPFYIF 189
Query: 574 GESY-----AGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGN 738
ESY AGI + + N G+A+G+ S + S + Y LL +
Sbjct: 190 SESYGGKMAAGIGLELYKAIQQGTIQCNFAGVALGDSWISPVHSVLSWGPYLYSVSLLDD 249
Query: 739 R-LWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSSGLNIYNLYAPC--AGGVPS 909
+ L Q + N K+ + E+ ++ G+N YN+ + S
Sbjct: 250 QGLAEVSQVAEQVLDAVNKGLYKEATQLWGKAEMVIEQNTDGVNFYNILTKSTPTSAMKS 309
Query: 910 HLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTYLNNPYVR 1089
L++ + +V +++ R H L+ + A S +N P +
Sbjct: 310 SLEFTQSHLV-----HLYQR-------HVRHLQRD-------------ALSQLMNGPIRK 344
Query: 1090 KALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLK-------LLTPQKYRILLYNGDVD 1248
K IPE C++ Q ++++M ++K L + +YNG +D
Sbjct: 345 KLKIIPED------CSW--GGQSTNVFENMEGDFMKPAISIVDELLEAGVNVTVYNGQLD 396
Query: 1249 MACNFMGDE-WFVXFPHQKM-EVQRRPWVVDYXD-SGEQIAGFVKEF 1380
+ + +G E W ++ + + W Y D + + FVK +
Sbjct: 397 LIVDTIGQEAWIRRLKWAELPKFNQLKWKALYSDPKSSETSAFVKSY 443
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,821,709
Number of extensions: 1888627
Number of successful extensions: 8535
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8494
Number of HSP's successfully gapped: 4
Length of query: 506
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 399
Effective length of database: 15,307,552
Effective search space: 6107713248
Effective search space used: 6107713248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012371
(1519 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230558.1| lysosomal protective protein [Sus scrofa]. 915 0.0
Alignment gi|XP_003134868.2| PREDICTED: probable serine carboxypeptidase ... 134 1e-31
Alignment gi|XP_003358161.1| PREDICTED: retinoid-inducible serine carboxy... 62 9e-10
>ref|NP_001230558.1| lysosomal protective protein [Sus scrofa].
Length = 495
Score = 915 bits (2366), Expect(2) = 0.0
Identities = 440/460 (95%), Positives = 442/460 (96%)
Frame = +1
Query: 4 MTSRPGAPPEEQGRGGAEMVRAAXXXXXXXXXXXXXWAPRSQAAADKDEIQCLPGLAKQP 183
MTSRPGAPPEEQGRGGAEMVRAA WAPRSQAAADKDEIQCLPGLAKQP
Sbjct: 1 MTSRPGAPPEEQGRGGAEMVRAALSPPFLLPLLLLSWAPRSQAAADKDEIQCLPGLAKQP 60
Query: 184 SFRQYSGYLRGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPFLVQP 363
SFRQYSGYLRGSGSKHLHYWF ESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPFLVQP
Sbjct: 61 SFRQYSGYLRGSGSKHLHYWFAESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPFLVQP 120
Query: 364 DGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSYATNDTEVAQSNYEALKDFFRLFP 543
DGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSYATNDTEVAQSNYEALKDFFRLFP
Sbjct: 121 DGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSYATNDTEVAQSNYEALKDFFRLFP 180
Query: 544 EYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYH 723
EYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYH
Sbjct: 181 EYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYH 240
Query: 724 GLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSSGLNIYNLYAPCAGGV 903
GLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSSGLNIYNLYAPCAGGV
Sbjct: 241 GLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSSGLNIYNLYAPCAGGV 300
Query: 904 PSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTYLNNPY 1083
PSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTYLNNPY
Sbjct: 301 PSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTYLNNPY 360
Query: 1084 VRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLTPQKYRILLYNGDVDMACNF 1263
VRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLTPQKYRILLYNGDVDMACNF
Sbjct: 361 VRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLTPQKYRILLYNGDVDMACNF 420
Query: 1264 MGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAGFVKEFS 1383
MGDEWFV +QKMEVQRRPW+VDY DSGEQIAGFVKEFS
Sbjct: 421 MGDEWFVDSLNQKMEVQRRPWLVDYGDSGEQIAGFVKEFS 460
Score = 64.3 bits (155), Expect(2) = 0.0
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 1383 HIAFLTIKGAGHMXPHRQPXAALTMFSRFLNKQPY 1487
HIAFLTIKGAGHM P +P AALTMFSRFLNKQPY
Sbjct: 461 HIAFLTIKGAGHMVPTDKPQAALTMFSRFLNKQPY 495
>ref|XP_003134868.2| PREDICTED: probable serine carboxypeptidase CPVL-like, partial [Sus
scrofa].
Length = 284
Score = 134 bits (338), Expect = 1e-31
Identities = 69/165 (41%), Positives = 110/165 (66%), Gaps = 8/165 (4%)
Frame = +1
Query: 196 YSGYL--RGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDG 369
YSGY+ + + +L +WF ++ DP ++PVVLWL GGPG SS+ GL EHGP++V+ +
Sbjct: 80 YSGYITVNKTYNSNLFFWFFPAKIDPWNAPVVLWLQGGPGGSSMFGLFVEHGPYVVRRN- 138
Query: 370 ATLEYNPYSWNLIANVLYLESPAGVGFSYSD-DKSYATNDTEVAQSNYEALKDFFRLFPE 546
T+ + W ++LY+++P G GFS++D + YA ++ +VA+ Y AL FF LF +
Sbjct: 139 MTVLARDFPWTTTFSMLYIDNPVGTGFSFTDHPQGYAVDEDDVARDLYSALIQFFLLFSD 198
Query: 547 YKDNELFLTGESYAGIYIPTLAVLV-MQDPS----MNLQGLAVGN 666
YK+N+ + TGESYAG Y+P LA + +P+ +NL+G+A+G+
Sbjct: 199 YKENDFYATGESYAGKYVPALAHYIHALNPAVTLKINLKGIALGD 243
>ref|XP_003358161.1| PREDICTED: retinoid-inducible serine carboxypeptidase-like [Sus
scrofa].
Length = 204
Score = 62.0 bits (149), Expect = 9e-10
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Frame = +1
Query: 229 HLHYWFVESQKDPKSS---PVVLWLNGGPGCSSLD-GLLTEHGPFLVQPDGATLEYNPYS 396
H+ +W + K+ P+V+WL GGPG SS G E GP + L+ +
Sbjct: 46 HMFWWLYYATNPCKNFTELPLVMWLQGGPGGSSTGFGNFEEIGPL-----DSDLKPRRTT 100
Query: 397 WNLIANVLYLESPAGVGFSY-SDDKSYATNDTEVAQSNYEALKDFFRLFPEYKDNELFLT 573
W A++L++++P G GFSY + +YA + VA LK FF E++ ++
Sbjct: 101 WLQAASLLFVDNPVGTGFSYVNRSNAYAKDLATVASDMMVLLKTFFDRHKEFQTIPFYIF 160
Query: 574 GESY-----AGIYIPTLAVLVMQDPSMNLQGLAVGN 666
ESY AGI + + N G+A+G+
Sbjct: 161 SESYGGKMAAGIALELHKAIQQGTIQCNFAGVALGD 196
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,139,772
Number of extensions: 1185958
Number of successful extensions: 5527
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5474
Number of HSP's successfully gapped: 4
Length of query: 506
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 403
Effective length of database: 8,779,541
Effective search space: 3538155023
Effective search space used: 3538155023
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012371
(1519 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032932.2| lysosomal protective protein isoform a [Mus mus... 776 0.0
Alignment gi|NP_001033581.1| lysosomal protective protein isoform b [Mus ... 760 0.0
Alignment gi|NP_082025.1| probable serine carboxypeptidase CPVL precursor... 148 1e-35
Alignment gi|NP_083299.3| retinoid-inducible serine carboxypeptidase prec... 81 2e-16
>ref|NP_032932.2| lysosomal protective protein isoform a [Mus musculus].
Length = 492
Score = 776 bits (2003), Expect(2) = 0.0
Identities = 372/460 (80%), Positives = 401/460 (87%)
Frame = +1
Query: 4 MTSRPGAPPEEQGRGGAEMVRAAXXXXXXXXXXXXXWAPRSQAAADKDEIQCLPGLAKQP 183
MTS P APP EQGR AEM A WA R++AA D+DEI CLPGLAKQP
Sbjct: 1 MTSSPKAPPGEQGRKEAEMPGTALSPLLLLLLLS--WASRNEAAPDQDEIDCLPGLAKQP 58
Query: 184 SFRQYSGYLRGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPFLVQP 363
SFRQYSGYLR S SKH HYWFVESQ DPK+SPVVLWLNGGPGCSSLDGLLTEHGPFL+QP
Sbjct: 59 SFRQYSGYLRASDSKHFHYWFVESQNDPKNSPVVLWLNGGPGCSSLDGLLTEHGPFLIQP 118
Query: 364 DGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSYATNDTEVAQSNYEALKDFFRLFP 543
DG TLEYNPY+WNLIANVLY+ESPAGVGFSYSDDK Y TNDTEVA++NYEALKDFFRLFP
Sbjct: 119 DGVTLEYNPYAWNLIANVLYIESPAGVGFSYSDDKMYVTNDTEVAENNYEALKDFFRLFP 178
Query: 544 EYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYH 723
EYKDN+LFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL+SYEQNDNSLVYFAYYH
Sbjct: 179 EYKDNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLASYEQNDNSLVYFAYYH 238
Query: 724 GLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSSGLNIYNLYAPCAGGV 903
GLLGNRLW+SLQTHCC+QNKCNFYDNKDP+CV +L EVS IV SGLNIYNLYAPCAGGV
Sbjct: 239 GLLGNRLWTSLQTHCCAQNKCNFYDNKDPECVNNLLEVSRIVGKSGLNIYNLYAPCAGGV 298
Query: 904 PSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTYLNNPY 1083
P +YE DT+VV D GNIFTRLPLKR + + L+RS + LDPPCTNTTA S YLNNPY
Sbjct: 299 PGRHRYE-DTLVVQDFGNIFTRLPLKRRFPEALMRSGDKVRLDPPCTNTTAPSNYLNNPY 357
Query: 1084 VRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLTPQKYRILLYNGDVDMACNF 1263
VRKALHIPE LP+WDMCNFLVN+QYRRLYQSM SQYLKLL+ QKY+ILLYNGDVDMACNF
Sbjct: 358 VRKALHIPESLPRWDMCNFLVNLQYRRLYQSMNSQYLKLLSSQKYQILLYNGDVDMACNF 417
Query: 1264 MGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAGFVKEFS 1383
MGDEWFV +QKMEVQRRPW+VDY +SGEQ+AGFVKE S
Sbjct: 418 MGDEWFVDSLNQKMEVQRRPWLVDYGESGEQVAGFVKECS 457
Score = 60.1 bits (144), Expect(2) = 0.0
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +3
Query: 1383 HIAFLTIKGAGHMXPHRQPXAALTMFSRFLNKQPY 1487
HI FLTIKGAGHM P +P AA TMFSRFLNK+PY
Sbjct: 458 HITFLTIKGAGHMVPTDKPRAAFTMFSRFLNKEPY 492
>ref|NP_001033581.1| lysosomal protective protein isoform b [Mus musculus].
Length = 474
Score = 760 bits (1962), Expect(2) = 0.0
Identities = 357/424 (84%), Positives = 386/424 (91%)
Frame = +1
Query: 112 WAPRSQAAADKDEIQCLPGLAKQPSFRQYSGYLRGSGSKHLHYWFVESQKDPKSSPVVLW 291
WA R++AA D+DEI CLPGLAKQPSFRQYSGYLR S SKH HYWFVESQ DPK+SPVVLW
Sbjct: 17 WASRNEAAPDQDEIDCLPGLAKQPSFRQYSGYLRASDSKHFHYWFVESQNDPKNSPVVLW 76
Query: 292 LNGGPGCSSLDGLLTEHGPFLVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKS 471
LNGGPGCSSLDGLLTEHGPFL+QPDG TLEYNPY+WNLIANVLY+ESPAGVGFSYSDDK
Sbjct: 77 LNGGPGCSSLDGLLTEHGPFLIQPDGVTLEYNPYAWNLIANVLYIESPAGVGFSYSDDKM 136
Query: 472 YATNDTEVAQSNYEALKDFFRLFPEYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQG 651
Y TNDTEVA++NYEALKDFFRLFPEYKDN+LFLTGESYAGIYIPTLAVLVMQDPSMNLQG
Sbjct: 137 YVTNDTEVAENNYEALKDFFRLFPEYKDNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQG 196
Query: 652 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQ 831
LAVGNGL+SYEQNDNSLVYFAYYHGLLGNRLW+SLQTHCC+QNKCNFYDNKDP+CV +L
Sbjct: 197 LAVGNGLASYEQNDNSLVYFAYYHGLLGNRLWTSLQTHCCAQNKCNFYDNKDPECVNNLL 256
Query: 832 EVSHIVSSSGLNIYNLYAPCAGGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRS 1011
EVS IV SGLNIYNLYAPCAGGVP +YE DT+VV D GNIFTRLPLKR + + L+RS
Sbjct: 257 EVSRIVGKSGLNIYNLYAPCAGGVPGRHRYE-DTLVVQDFGNIFTRLPLKRRFPEALMRS 315
Query: 1012 EGRANLDPPCTNTTAASTYLNNPYVRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQY 1191
+ LDPPCTNTTA S YLNNPYVRKALHIPE LP+WDMCNFLVN+QYRRLYQSM SQY
Sbjct: 316 GDKVRLDPPCTNTTAPSNYLNNPYVRKALHIPESLPRWDMCNFLVNLQYRRLYQSMNSQY 375
Query: 1192 LKLLTPQKYRILLYNGDVDMACNFMGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAGFV 1371
LKLL+ QKY+ILLYNGDVDMACNFMGDEWFV +QKMEVQRRPW+VDY +SGEQ+AGFV
Sbjct: 376 LKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVDYGESGEQVAGFV 435
Query: 1372 KEFS 1383
KE S
Sbjct: 436 KECS 439
Score = 60.1 bits (144), Expect(2) = 0.0
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +3
Query: 1383 HIAFLTIKGAGHMXPHRQPXAALTMFSRFLNKQPY 1487
HI FLTIKGAGHM P +P AA TMFSRFLNK+PY
Sbjct: 440 HITFLTIKGAGHMVPTDKPRAAFTMFSRFLNKEPY 474
>ref|NP_082025.1| probable serine carboxypeptidase CPVL precursor [Mus musculus].
Length = 478
Score = 148 bits (374), Expect = 1e-35
Identities = 81/226 (35%), Positives = 128/226 (56%), Gaps = 8/226 (3%)
Frame = +1
Query: 142 KDEIQCLPGLAKQPSFRQYSGYL--RGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCS 315
K + PG+ + + Y+GY+ + + +L +WF ++ P+ +PVVLWL GGPG S
Sbjct: 62 KSMVSPFPGM----NDKSYAGYITVNQTYNSNLFFWFFPARMQPEDAPVVLWLQGGPGGS 117
Query: 316 SLDGLLTEHGPFLVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDD-KSYATNDTE 492
S+ GL EHGP+++ + T+ + W ++LY+++P G GFS++D + YAT++ +
Sbjct: 118 SMFGLFVEHGPYIITSN-MTVVARDFPWTFTLSMLYIDNPVGTGFSFTDHFQGYATSEDD 176
Query: 493 VAQSNYEALKDFFRLFPEYKDNELFLTGESYAGIYIPTLAVLV-----MQDPSMNLQGLA 657
VAQ Y AL FF LFPEY N+ ++TGESYAG Y+P LA + ++ + L+G+A
Sbjct: 177 VAQDLYSALIQFFTLFPEYAKNDFYVTGESYAGKYVPALAHYIHSLNPVRKFKIRLKGIA 236
Query: 658 VGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFY 795
+G+ + E F Y GLL + Q C +KC Y
Sbjct: 237 IGDAYTDPESIIGGYAAFLYEIGLLDEQQQKYFQKQC---SKCVKY 279
>ref|NP_083299.3| retinoid-inducible serine carboxypeptidase precursor [Mus musculus].
Length = 452
Score = 81.3 bits (199), Expect(2) = 2e-16
Identities = 98/419 (23%), Positives = 163/419 (38%), Gaps = 17/419 (4%)
Frame = +1
Query: 175 KQPSFRQYSGYLRGSGSKHLHYWFVESQKDPKSS---PVVLWLNGGPGCSSLD-GLLTEH 342
++P ++ Y+ H+ +W + K+ P+V+WL GGPG SS G E
Sbjct: 32 REPEGKEVWDYVTVRKDAHMFWWLYYATNPCKNFSELPLVMWLQGGPGGSSTGFGNFEEI 91
Query: 343 GPFLVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSY-SDDKSYATNDTEVAQSNYEAL 519
GP Q L+ +W A++L++++P G GFSY + +YA + VA L
Sbjct: 92 GPLDTQ-----LKPRNTTWLQWASLLFVDNPVGTGFSYVNTTDAYAKDLDTVASDMMVLL 146
Query: 520 KDFFRLFPEYKDNELFLTGESY-----AGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYE 684
K FF E++ ++ ESY AGI + + N G+A+G+ S
Sbjct: 147 KSFFDCHKEFQTVPFYIFSESYGGKMAAGISVELYKAVQQGTIKCNFSGVALGDSWISPV 206
Query: 685 QNDNSLVYFAYYHGLLGNR---LWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSS 855
+ S + Y LL N+ S + FY K+ + E+ ++
Sbjct: 207 DSVLSWGPYLYSMSLLDNQGLAEVSDIAEQVLDAVNKGFY--KEATQLWGKAEMIIEKNT 264
Query: 856 SGLNIYNLYAPCAGGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDP 1035
G+N YN+ + E F R PL R+ + + +G
Sbjct: 265 DGVNFYNILTKSSPEKAMESSLE------------FLRSPLVRLCQRHVRHLQG------ 306
Query: 1036 PCTNTTAASTYLNNPYVRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLTPQK 1215
A S +N P +K IPE + W V + + + L
Sbjct: 307 -----DALSQLMNGPIKKKLKIIPEDI-SWGAQASYVFLSMEGDFMKPAIDVVDKLLAAG 360
Query: 1216 YRILLYNGDVDMACNFMGDEWFV---XFPHQKMEVQRRPWVVDYXD-SGEQIAGFVKEF 1380
+ +YNG +D+ + +G E +V +P Q + + W Y D + A FVK +
Sbjct: 361 VNVTVYNGQLDLIVDTIGQESWVQKLKWP-QLSKFNQLKWKALYTDPKSSETAAFVKSY 418
Score = 23.9 bits (50), Expect(2) = 2e-16
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 1383 HIAFLTIKGAGHMXPHRQPXAALTMFSRFLNKQ 1481
++AF I AGHM P Q AL M + + KQ
Sbjct: 420 NLAFYWILKAGHMVPSDQGEMALKMM-KLVTKQ 451
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,373,255
Number of extensions: 1525913
Number of successful extensions: 6736
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6675
Number of HSP's successfully gapped: 7
Length of query: 506
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 400
Effective length of database: 12,433,743
Effective search space: 4973497200
Effective search space used: 4973497200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012371
(1519 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000299.2| lysosomal protective protein isoform a precurso... 824 0.0
Alignment gi|NP_001121167.1| lysosomal protective protein isoform b precu... 797 0.0
Alignment gi|NP_001161066.1| lysosomal protective protein isoform c precu... 777 0.0
Alignment gi|NP_061902.2| probable serine carboxypeptidase CPVL precursor... 164 2e-40
Alignment gi|NP_112601.3| probable serine carboxypeptidase CPVL precursor... 164 2e-40
Alignment gi|NP_067639.1| retinoid-inducible serine carboxypeptidase prec... 65 2e-10
>ref|NP_000299.2| lysosomal protective protein isoform a precursor [Homo sapiens].
Length = 498
Score = 824 bits (2128), Expect(2) = 0.0
Identities = 395/463 (85%), Positives = 421/463 (90%), Gaps = 3/463 (0%)
Frame = +1
Query: 4 MTSRPGAPPEEQGRGGAEMVRAAXXXXXXXXXXXXX---WAPRSQAAADKDEIQCLPGLA 174
MTS P APP EQGRGGAEM+RAA WA R +AA D+DEIQ LPGLA
Sbjct: 1 MTSSPRAPPGEQGRGGAEMIRAAPPPLFLLLLLLLLLVSWASRGEAAPDQDEIQRLPGLA 60
Query: 175 KQPSFRQYSGYLRGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPFL 354
KQPSFRQYSGYL+GSGSKHLHYWFVESQKDP++SPVVLWLNGGPGCSSLDGLLTEHGPFL
Sbjct: 61 KQPSFRQYSGYLKGSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFL 120
Query: 355 VQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSYATNDTEVAQSNYEALKDFFR 534
VQPDG TLEYNPYSWNLIANVLYLESPAGVGFSYSDDK YATNDTEVAQSN+EAL+DFFR
Sbjct: 121 VQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFR 180
Query: 535 LFPEYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFA 714
LFPEYK+N+LFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFA
Sbjct: 181 LFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFA 240
Query: 715 YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSSGLNIYNLYAPCA 894
YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKD +CVT+LQEV+ IV +SGLNIYNLYAPCA
Sbjct: 241 YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCA 300
Query: 895 GGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTYLN 1074
GGVPSH +YEKDT+VV DLGNIFTRLPLKR+WHQ LLRS + +DPPCTNTTAASTYLN
Sbjct: 301 GGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLN 360
Query: 1075 NPYVRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLTPQKYRILLYNGDVDMA 1254
NPYVRKAL+IPEQLPQWDMCNFLVN+QYRRLY+SM SQYLKLL+ QKY+ILLYNGDVDMA
Sbjct: 361 NPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMA 420
Query: 1255 CNFMGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAGFVKEFS 1383
CNFMGDEWFV +QKMEVQRRPW+V Y DSGEQIAGFVKEFS
Sbjct: 421 CNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFS 463
Score = 62.8 bits (151), Expect(2) = 0.0
Identities = 29/35 (82%), Positives = 30/35 (85%)
Frame = +3
Query: 1383 HIAFLTIKGAGHMXPHRQPXAALTMFSRFLNKQPY 1487
HIAFLTIKGAGHM P +P AA TMFSRFLNKQPY
Sbjct: 464 HIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQPY 498
>ref|NP_001121167.1| lysosomal protective protein isoform b precursor [Homo sapiens].
Length = 480
Score = 797 bits (2058), Expect(2) = 0.0
Identities = 376/424 (88%), Positives = 401/424 (94%)
Frame = +1
Query: 112 WAPRSQAAADKDEIQCLPGLAKQPSFRQYSGYLRGSGSKHLHYWFVESQKDPKSSPVVLW 291
WA R +AA D+DEIQ LPGLAKQPSFRQYSGYL+GSGSKHLHYWFVESQKDP++SPVVLW
Sbjct: 22 WASRGEAAPDQDEIQRLPGLAKQPSFRQYSGYLKGSGSKHLHYWFVESQKDPENSPVVLW 81
Query: 292 LNGGPGCSSLDGLLTEHGPFLVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKS 471
LNGGPGCSSLDGLLTEHGPFLVQPDG TLEYNPYSWNLIANVLYLESPAGVGFSYSDDK
Sbjct: 82 LNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 141
Query: 472 YATNDTEVAQSNYEALKDFFRLFPEYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQG 651
YATNDTEVAQSN+EAL+DFFRLFPEYK+N+LFLTGESYAGIYIPTLAVLVMQDPSMNLQG
Sbjct: 142 YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQG 201
Query: 652 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQ 831
LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKD +CVT+LQ
Sbjct: 202 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQ 261
Query: 832 EVSHIVSSSGLNIYNLYAPCAGGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRS 1011
EV+ IV +SGLNIYNLYAPCAGGVPSH +YEKDT+VV DLGNIFTRLPLKR+WHQ LLRS
Sbjct: 262 EVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRS 321
Query: 1012 EGRANLDPPCTNTTAASTYLNNPYVRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQY 1191
+ +DPPCTNTTAASTYLNNPYVRKAL+IPEQLPQWDMCNFLVN+QYRRLY+SM SQY
Sbjct: 322 GDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQY 381
Query: 1192 LKLLTPQKYRILLYNGDVDMACNFMGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAGFV 1371
LKLL+ QKY+ILLYNGDVDMACNFMGDEWFV +QKMEVQRRPW+V Y DSGEQIAGFV
Sbjct: 382 LKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFV 441
Query: 1372 KEFS 1383
KEFS
Sbjct: 442 KEFS 445
Score = 62.8 bits (151), Expect(2) = 0.0
Identities = 29/35 (82%), Positives = 30/35 (85%)
Frame = +3
Query: 1383 HIAFLTIKGAGHMXPHRQPXAALTMFSRFLNKQPY 1487
HIAFLTIKGAGHM P +P AA TMFSRFLNKQPY
Sbjct: 446 HIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQPY 480
>ref|NP_001161066.1| lysosomal protective protein isoform c precursor [Homo sapiens].
Length = 481
Score = 777 bits (2006), Expect(2) = 0.0
Identities = 379/463 (81%), Positives = 405/463 (87%), Gaps = 3/463 (0%)
Frame = +1
Query: 4 MTSRPGAPPEEQGRGGAEMVRAAXXXXXXXXXXXXX---WAPRSQAAADKDEIQCLPGLA 174
MTS P APP EQGRGGAEM+RAA WA R +AA D+DEIQ LPGLA
Sbjct: 1 MTSSPRAPPGEQGRGGAEMIRAAPPPLFLLLLLLLLLVSWASRGEAAPDQDEIQRLPGLA 60
Query: 175 KQPSFRQYSGYLRGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPFL 354
KQPSFRQYSGYL+GSGSKHLHYWFVESQKDP++SPVVLWLNGGPGCSSLDGLLTEHGPFL
Sbjct: 61 KQPSFRQYSGYLKGSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFL 120
Query: 355 VQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDKSYATNDTEVAQSNYEALKDFFR 534
IANVLYLESPAGVGFSYSDDK YATNDTEVAQSN+EAL+DFFR
Sbjct: 121 -----------------IANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFR 163
Query: 535 LFPEYKDNELFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFA 714
LFPEYK+N+LFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFA
Sbjct: 164 LFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFA 223
Query: 715 YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSSGLNIYNLYAPCA 894
YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKD +CVT+LQEV+ IV +SGLNIYNLYAPCA
Sbjct: 224 YYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIVGNSGLNIYNLYAPCA 283
Query: 895 GGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTYLN 1074
GGVPSH +YEKDT+VV DLGNIFTRLPLKR+WHQ LLRS + +DPPCTNTTAASTYLN
Sbjct: 284 GGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLN 343
Query: 1075 NPYVRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLTPQKYRILLYNGDVDMA 1254
NPYVRKAL+IPEQLPQWDMCNFLVN+QYRRLY+SM SQYLKLL+ QKY+ILLYNGDVDMA
Sbjct: 344 NPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMA 403
Query: 1255 CNFMGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAGFVKEFS 1383
CNFMGDEWFV +QKMEVQRRPW+V Y DSGEQIAGFVKEFS
Sbjct: 404 CNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFS 446
Score = 62.8 bits (151), Expect(2) = 0.0
Identities = 29/35 (82%), Positives = 30/35 (85%)
Frame = +3
Query: 1383 HIAFLTIKGAGHMXPHRQPXAALTMFSRFLNKQPY 1487
HIAFLTIKGAGHM P +P AA TMFSRFLNKQPY
Sbjct: 447 HIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQPY 481
>ref|NP_061902.2| probable serine carboxypeptidase CPVL precursor [Homo sapiens].
Length = 476
Score = 164 bits (416), Expect = 2e-40
Identities = 121/424 (28%), Positives = 203/424 (47%), Gaps = 19/424 (4%)
Frame = +1
Query: 163 PGLAKQPSFRQYSGYL--RGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLT 336
PGL + + Y+G+L + + +L +WF +Q P+ +PVVLWL GGPG SS+ GL
Sbjct: 67 PGL----NMKSYAGFLTVNKTYNSNLFFWFFPAQIQPEDAPVVLWLQGGPGGSSMFGLFV 122
Query: 337 EHGPFLVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDK-SYATNDTEVAQSNYE 513
EHGP++V + TL + W ++LY+++P G GFS++DD YA N+ +VA+ Y
Sbjct: 123 EHGPYVVTSN-MTLRDRDFPWTTTLSMLYIDNPVGTGFSFTDDTHGYAVNEDDVARDLYS 181
Query: 514 ALKDFFRLFPEYKDNELFLTGESYAGIYIPTLAVLV-----MQDPSMNLQGLAVGNGLSS 678
AL FF++FPEYK+N+ ++TGESYAG Y+P +A L+ +++ +NL G+A+G+G S
Sbjct: 182 ALIQFFQIFPEYKNNDFYVTGESYAGKYVPAIAHLIHSLNPVREVKINLNGIAIGDGYSD 241
Query: 679 YEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSS 858
E F Y GLL + Q C ++C + HI +
Sbjct: 242 PESIIGGYAEFLYQIGLLDEKQKKYFQKQC---HEC----------------IEHIRKQN 282
Query: 859 GLNIYNLYAPCA-GGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDP 1035
+ + G + S Y ++ V N + L
Sbjct: 283 WFEAFEILDKLLDGDLTSDPSYFQN---VTGCSNYYNFL--------------------- 318
Query: 1036 PCTNTTAASTY---LNNPYVRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLT 1206
CT Y L+ P VR+A+H+ Q ++ + QS+ +++
Sbjct: 319 RCTEPEDQLYYVKFLSLPEVRQAIHVGNQ--TFNDGTIVEKYLREDTVQSVKPWLTEIM- 375
Query: 1207 PQKYRILLYNGDVDMAC-------NFMGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAG 1365
Y++L+YNG +D+ + MG +W ++K E ++ W + DS ++AG
Sbjct: 376 -NNYKVLIYNGQLDIIVAAALTERSLMGMDWKGSQEYKKAE--KKVWKIFKSDS--EVAG 430
Query: 1366 FVKE 1377
++++
Sbjct: 431 YIRQ 434
>ref|NP_112601.3| probable serine carboxypeptidase CPVL precursor [Homo sapiens].
Length = 476
Score = 164 bits (416), Expect = 2e-40
Identities = 121/424 (28%), Positives = 203/424 (47%), Gaps = 19/424 (4%)
Frame = +1
Query: 163 PGLAKQPSFRQYSGYL--RGSGSKHLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLT 336
PGL + + Y+G+L + + +L +WF +Q P+ +PVVLWL GGPG SS+ GL
Sbjct: 67 PGL----NMKSYAGFLTVNKTYNSNLFFWFFPAQIQPEDAPVVLWLQGGPGGSSMFGLFV 122
Query: 337 EHGPFLVQPDGATLEYNPYSWNLIANVLYLESPAGVGFSYSDDK-SYATNDTEVAQSNYE 513
EHGP++V + TL + W ++LY+++P G GFS++DD YA N+ +VA+ Y
Sbjct: 123 EHGPYVVTSN-MTLRDRDFPWTTTLSMLYIDNPVGTGFSFTDDTHGYAVNEDDVARDLYS 181
Query: 514 ALKDFFRLFPEYKDNELFLTGESYAGIYIPTLAVLV-----MQDPSMNLQGLAVGNGLSS 678
AL FF++FPEYK+N+ ++TGESYAG Y+P +A L+ +++ +NL G+A+G+G S
Sbjct: 182 ALIQFFQIFPEYKNNDFYVTGESYAGKYVPAIAHLIHSLNPVREVKINLNGIAIGDGYSD 241
Query: 679 YEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDPDCVTSLQEVSHIVSSS 858
E F Y GLL + Q C ++C + HI +
Sbjct: 242 PESIIGGYAEFLYQIGLLDEKQKKYFQKQC---HEC----------------IEHIRKQN 282
Query: 859 GLNIYNLYAPCA-GGVPSHLKYEKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDP 1035
+ + G + S Y ++ V N + L
Sbjct: 283 WFEAFEILDKLLDGDLTSDPSYFQN---VTGCSNYYNFL--------------------- 318
Query: 1036 PCTNTTAASTY---LNNPYVRKALHIPEQLPQWDMCNFLVNIQYRRLYQSMYSQYLKLLT 1206
CT Y L+ P VR+A+H+ Q ++ + QS+ +++
Sbjct: 319 RCTEPEDQLYYVKFLSLPEVRQAIHVGNQ--TFNDGTIVEKYLREDTVQSVKPWLTEIM- 375
Query: 1207 PQKYRILLYNGDVDMAC-------NFMGDEWFVXFPHQKMEVQRRPWVVDYXDSGEQIAG 1365
Y++L+YNG +D+ + MG +W ++K E ++ W + DS ++AG
Sbjct: 376 -NNYKVLIYNGQLDIIVAAALTERSLMGMDWKGSQEYKKAE--KKVWKIFKSDS--EVAG 430
Query: 1366 FVKE 1377
++++
Sbjct: 431 YIRQ 434
>ref|NP_067639.1| retinoid-inducible serine carboxypeptidase precursor [Homo sapiens].
Length = 452
Score = 65.1 bits (157), Expect = 2e-10
Identities = 84/363 (23%), Positives = 144/363 (39%), Gaps = 14/363 (3%)
Frame = +1
Query: 238 YWFVESQKDPKSSPVVLWLNGGPGCSSLD-GLLTEHGPFLVQPDGATLEYNPYSWNLIAN 414
Y+ S K+ P+V+WL GGPG SS G E GP + L+ +W A+
Sbjct: 56 YYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPL-----DSDLKPRKTTWLQAAS 110
Query: 415 VLYLESPAGVGFSY-SDDKSYATNDTEVAQSNYEALKDFFRLFPEYKDNELFLTGESY-- 585
+L++++P G GFSY + +YA + VA LK FF E++ ++ ESY
Sbjct: 111 LLFVDNPVGTGFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGG 170
Query: 586 ---AGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSL 756
AGI + + N G+A+G+ S + S + Y LL ++
Sbjct: 171 KMAAGIGLELYKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDK--GLA 228
Query: 757 QTHCCSQNKCNFYDNKDPDCVTSLQEVSHIV---SSSGLNIYNLYAPC--AGGVPSHLKY 921
+ ++ N + T L + ++ ++ G+N YN+ + S L++
Sbjct: 229 EVSKVAEQVLNAVNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESSLEF 288
Query: 922 EKDTIVVPDLGNIFTRLPLKRIWHQTLLRSEGRANLDPPCTNTTAASTYLNNPYVRKALH 1101
+ +V L + + H A S +N P +RK L
Sbjct: 289 TQSHLVC---------LCQRHVRH----------------LQRDALSQLMNGP-IRKKLK 322
Query: 1102 IPEQLPQW--DMCNFLVNIQYRRLYQSMYSQYLKLLTPQKYRILLYNGDVDMACNFMGDE 1275
I + W N VN++ + + L + +YNG +D+ + MG E
Sbjct: 323 IIPEDQSWGGQATNVFVNME--EDFMKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQE 380
Query: 1276 WFV 1284
+V
Sbjct: 381 AWV 383
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,407,324
Number of extensions: 1843372
Number of successful extensions: 8178
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8108
Number of HSP's successfully gapped: 9
Length of query: 506
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 399
Effective length of database: 14,770,016
Effective search space: 5893236384
Effective search space used: 5893236384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012371
(1519 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 375 e-101
>Sscrofa_Chr17
|| Length = 69701581
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 56 agatggttcgagccgcgctgtcgccgccgttcctcctgccgctgctgctgctctcctggg 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53729237 agatggttcgagccgcgctgtcgccgccgttcctcctgccgctgctgctgctctcctggg 53729296
Query: 116 cgccccgaagccaggcagccgccgacaaggacgagatccagtgcctgcccggactggcca 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53729297 cgccccgaagccaggcagccgccgacaaggacgagatccagtgcctgcccggactggcca 53729356
Query: 176 aacagccgtctttccgccagtactctggctacctccgaggctccggctccaagcacctgc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53729357 aacagccgtctttccgccagtactctggctacctccgaggctccggctccaagcacctgc 53729416
Query: 236 actactggt 244
|||||||||
Sbjct: 53729417 actactggt 53729425
Score = 311 bits (157), Expect = 6e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 493 gtcgcccagagcaattatgaagcccttaaagatttcttccgccttttcccggagtacaag 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53730502 gtcgcccagagcaattatgaagcccttaaagatttcttccgccttttcccggagtacaag 53730561
Query: 553 gacaatgagcttttcctgaccggagagagctacgccggcatctacatccccactctggcc 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53730562 gacaatgagcttttcctgaccggagagagctacgccggcatctacatccccactctggcc 53730621
Query: 613 gtgttggtcatgcaggaccccagcatgaacctgcagg 649
|||||||||||||||||||||||||||||||||||||
Sbjct: 53730622 gtgttggtcatgcaggaccccagcatgaacctgcagg 53730658
Score = 242 bits (122), Expect = 5e-61
Identities = 136/143 (95%)
Strand = Plus / Plus
Query: 994 cagacactgctgcgttctgaggggagggcgaacctggannnnnnntgcacgaacacaaca 1053
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 53733223 cagacactgctgcgttctgaggggagggcgaacctggaccccccctgcacgaacacaaca 53733282
Query: 1054 gccgcctccacctacctcaacaacccgtatgtccggaaggccctccacatccccgagcag 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53733283 gccgcctccacctacctcaacaacccgtatgtccggaaggccctccacatccccgagcag 53733342
Query: 1114 ctgccccaatgggacatgtgcaa 1136
|||||||||||||||||||||||
Sbjct: 53733343 ctgccccaatgggacatgtgcaa 53733365
Score = 228 bits (115), Expect = 7e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 242 ggtttgtggagtcccagaaggatcccaagagcagccctgtggtgctttggctcaacggag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53729593 ggtttgtggagtcccagaaggatcccaagagcagccctgtggtgctttggctcaacggag 53729652
Query: 302 ggccaggctgtagctccctggacgggctccttactgagcacggccccttcctggt 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53729653 ggccaggctgtagctccctggacgggctccttactgagcacggccccttcctggt 53729707
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 646 caggggctggctgtgggcaatggactctcctcctatgagcagaacgacaactccctggtc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53730986 caggggctggctgtgggcaatggactctcctcctatgagcagaacgacaactccctggtc 53731045
Query: 706 tatttcgcatactaccacggccttctggggaacagg 741
||||||||||||||||||||||||||||||||||||
Sbjct: 53731046 tatttcgcatactaccacggccttctggggaacagg 53731081
Score = 188 bits (95), Expect = 6e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 826 cttcaggaagtgtcccacatcgtaagcagctctggcctcaacatctacaacctctacgcc 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53732886 cttcaggaagtgtcccacatcgtaagcagctctggcctcaacatctacaacctctacgcc 53732945
Query: 886 ccgtgtgctggaggggtgcccagccatttaaagta 920
|||||||||||||||||||||||||||||||||||
Sbjct: 53732946 ccgtgtgctggaggggtgcccagccatttaaagta 53732980
Score = 184 bits (93), Expect = 1e-43
Identities = 105/108 (97%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 1301 agatggaggtgcagcgccggccctgggtggtggactacngggacagcggggagcagatcg 1360
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 53735805 agatggaggtgcagcgccggccctggttggtggactacggggacagcggggagcagatcg 53735864
Query: 1361 ctggcttcgtgaaggagtttt-ccacatcgccttccttaccatcaagg 1407
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 53735865 ctggcttcgtgaaggagttttcccacatcgccttccttaccatcaagg 53735912
Score = 174 bits (88), Expect = 9e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 738 caggctctggtcttccctccagacccactgctgttctcaaaacaagtgtaacttctacga 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53731423 caggctctggtcttccctccagacccactgctgttctcaaaacaagtgtaacttctacga 53731482
Query: 798 caacaaagacccagactgcgtgaccagt 825
||||||||||||||||||||||||||||
Sbjct: 53731483 caacaaagacccagactgcgtgaccagt 53731510
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 918 gtatgagaaggacaccatcgtggtcccagatctgggcaacatcttcactcgcttgccact 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53733058 gtatgagaaggacaccatcgtggtcccagatctgggcaacatcttcactcgcttgccact 53733117
Query: 978 caagcggatctggcatcag 996
|||||||||||||||||||
Sbjct: 53733118 caagcggatctggcatcag 53733136
Score = 155 bits (78), Expect = 8e-35
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 405 gattgccaatgtgttgtacctcgagtccccagctggggtgggcttttcgtactccgatga 464
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 53730187 gattgccaatgtgtcgtacctcaagtccccagctggggtgggcttttcgtactccgatga 53730246
Query: 465 caagtcttatgcgaccaatgacacggaagt 494
||||||| ||||||||||||||||||||||
Sbjct: 53730247 caagtctaatgcgaccaatgacacggaagt 53730276
Score = 153 bits (77), Expect = 3e-34
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1132 tgcaacttcctggtgaatatccagtatcgccgtctctaccaaagcatgtacagccagtac 1191
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53734545 tgcagcttcctggtgaatatccagtatcgccgtctctaccaaagcatgtacagccagtac 53734604
Query: 1192 ctgaagctgctcaccccgcag 1212
|||||||||||||||||||||
Sbjct: 53734605 ctgaagctgctcaccccgcag 53734625
Score = 151 bits (76), Expect = 1e-33
Identities = 95/99 (95%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 1405 agggcgccggacacatggntccccaccgaca-gccccangctgccctcaccatgttctcc 1463
|||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||
Sbjct: 53736134 agggcgccggacacatgg-tccccaccgacaagccccaggctgccctcaccatgttctcc 53736192
Query: 1464 cgcttcctgaataagcagccgtactgaggaacacgggga 1502
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 53736193 cgcttcctgaataagcagccgtactgaggaccacgggga 53736231
Score = 147 bits (74), Expect = 2e-32
Identities = 84/86 (97%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1210 cagaaataccggatcctgctgtacaatggcgatgtggacatggcctgcaatttcatgggg 1269
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53735554 cagaaataccggatcctgctgtacaatggcgatgtggacatggcctgcaatttcatggga 53735613
Query: 1270 gatgagtggtttgtggnattccctca 1295
|||||||||||||||| |||||||||
Sbjct: 53735614 gatgagtggtttgtgg-attccctca 53735638
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 2 acatgacttcccgtcccggggcacctcctgaagaacaaggacgcgggggagcagag 57
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53729010 acatgacttcccgtcccggggcacctcctgaagaacaaggacgcgggggagcagag 53729065
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,575,044
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 14
Length of query: 1519
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1498
Effective length of database: 2,808,413,156
Effective search space: 4207002907688
Effective search space used: 4207002907688
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)