Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012376
(1208 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus]. 484 e-137
Alignment gi|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 ... 381 e-106
Alignment gi|NP_001077206.1| short-chain dehydrogenase/reductase family 9... 338 7e-93
Alignment gi|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus]. 314 1e-85
Alignment gi|NP_777158.1| dehydrogenase/reductase SDR family member 9 pre... 311 6e-85
Alignment gi|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitoch... 175 6e-44
Alignment gi|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos tauru... 169 5e-42
Alignment gi|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 136 4e-32
Alignment gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil... 88 2e-17
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 87 3e-17
>ref|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus].
Length = 317
Score = 484 bits (1247), Expect = e-137
Identities = 234/313 (74%), Positives = 267/313 (85%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RW RERQVVSHLRDK+VFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GA+QLR QTSDRL+TV+LDVTKT+SVAAA EWVKERVGDRGLWGLVNNAGI P A
Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
PNEWLTKQDFM +LDVNLLG++DVTL +LPLVRK +GRVVNVSS+MGRV+L GGGYC+SK
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRRELSYFGVKV +IEPG+F T +T+ + + QA+W QASPE+K+LYG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAVTSPKALSQGFQASWNQASPEIKELYGE 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
F+AN MK+ DLL+ +LSLVTNCMEHALT+CHPRTRYSPGWDAKF YLPMSYLP+F
Sbjct: 241 KFMANLMKSVDLLETTSCQDLSLVTNCMEHALTACHPRTRYSPGWDAKFIYLPMSYLPSF 300
Query: 1105 LMDLMMCYGAP*P 1143
L+DLM+ + P P
Sbjct: 301 LVDLMVYWRNPRP 313
>ref|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus].
Length = 317
Score = 381 bits (978), Expect = e-106
Identities = 192/316 (60%), Positives = 235/316 (74%), Gaps = 3/316 (0%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RW RERQVVSHL+DK+VFITGCDSGFGN LARQLDLRGLRVLA C
Sbjct: 1 MWLYLAVLLGLYYLLRWFRERQVVSHLQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTEQGA+QLR QTSDRL+TV+LDVTKTES+AAA EWVKE VGDRGLWGLVNNAGI
Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTESIAAATEWVKECVGDRGLWGLVNNAGIFHSHG 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
EW+ + + L VNL+G+++VTL +LPLVRK +GR+VNVSS++GR++ FG Y SK
Sbjct: 121 YAEWIKIETYRDTLRVNLIGVIEVTLSMLPLVRKAQGRIVNVSSILGRIAFFGAVYSCSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSD LRREL +FGVKV+++EPG+F T MT + F+ ++ W++ +K+ YG
Sbjct: 181 YGVEAFSDILRRELQHFGVKVSMVEPGYFRTAMTDWQKFSEIMKQIWKETPAHIKETYGQ 240
Query: 925 AFVANFMKTYDLLKP---QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYL 1095
F F +DL+K S NL+LVT+CMEHALTS HPRTRYS GWDA+FF++P+SYL
Sbjct: 241 KF---FDAYHDLMKQGLLSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFVPLSYL 297
Query: 1096 PTFLMDLMMCYGAP*P 1143
PT L D ++ P P
Sbjct: 298 PTSLADYILTRSWPKP 313
>ref|NP_001077206.1| short-chain dehydrogenase/reductase family 9C member 7 [Bos taurus].
Length = 313
Score = 338 bits (866), Expect = 7e-93
Identities = 163/302 (53%), Positives = 225/302 (74%), Gaps = 4/302 (1%)
Frame = +1
Query: 250 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
RW + +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC T++GAQ+L++ TS
Sbjct: 12 RWFKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSY 71
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
+L+T+LLDVTKTES+ AA +WV+++VG++GLW LVNNAG+ +P PNEWLTK+DF+ +++
Sbjct: 72 QLQTILLDVTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL+G+++VTL +LP+V+K +GRVVN+SS GRV++ GGGYC+SK+GVEAFSDS+RREL
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCISKFGVEAFSDSIRRELH 191
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD----AFVANFMKTYD 957
YFGVKV++IEPG F T + + +++ W++ PE ++ YG+ + N T
Sbjct: 192 YFGVKVSIIEPGNFRTAILGKDGLEKHMRKLWERLPPETRESYGEEYFRIYTDNLKSTMQ 251
Query: 958 LLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMMCYGAP 1137
L P+ +S VTN MEHA+ S PR RY+PG DAK YLP++ PT + D ++ P
Sbjct: 252 LADPR----ISEVTNSMEHAIVSRSPRIRYNPGLDAKLLYLPLAKFPTPVTDFILSRYLP 307
Query: 1138 *P 1143
P
Sbjct: 308 RP 309
>ref|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus].
Length = 318
Score = 314 bits (804), Expect = 1e-85
Identities = 151/301 (50%), Positives = 213/301 (70%), Gaps = 1/301 (0%)
Frame = +1
Query: 259 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 438
R+RQ + D ++FITGCDSGFG LLA +LD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQCLP-ASDAFIFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 439 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNL 618
T LLDVT +S+ A +WV+ VG+ GL+GLVNNAG+ + P W T++DF +L+VN
Sbjct: 78 TTLLDVTDPQSIRQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNT 137
Query: 619 LGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 798
LG + VTL LLPL+ + +GRV+N++SV+GR++ GGGYC+SK+G+EAFSDSLRR+++ FG
Sbjct: 138 LGPIGVTLALLPLLLQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAPFG 197
Query: 799 VKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYD-LLKPQW 975
V+V+++EPGFF T +T E LQA W + P + LYG+AF+ +++ ++
Sbjct: 198 VRVSIVEPGFFRTPVTNLETLEDTLQACWARLPPATQALYGEAFLTKYLRVQQRIMNMIC 257
Query: 976 SGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMMCYGAP*PC*VL 1155
+L+ V+ C+EHALT+ HPRTRYSPGWDAK +LP SYLP L+D ++ + P P +
Sbjct: 258 DPDLAKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPARLVDAVLAWVLPKPAQTV 317
Query: 1156 Y 1158
Y
Sbjct: 318 Y 318
>ref|NP_777158.1| dehydrogenase/reductase SDR family member 9 precursor [Bos taurus].
Length = 319
Score = 311 bits (798), Expect = 6e-85
Identities = 147/291 (50%), Positives = 208/291 (71%), Gaps = 1/291 (0%)
Frame = +1
Query: 253 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
W +RQ+ ++++ DKY+FITGCD+GFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WNYKRQLKIANITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL TVLLDVT E+V A +WVK +VG++GLWGL+NNAGI LAPN+WLT +D+ ++
Sbjct: 76 RLHTVLLDVTDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLAPNDWLTVEDYREPVE 135
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL G++ VTL +LPLV+K +GR++NVSS+ GR++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLISVTLNMLPLVKKARGRIINVSSIGGRLAFGGGGYSPSKYAVEGFNDSLRRDMK 195
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
FGV VA IEPG F TN++ E A W+ SP++K YG++++ ++
Sbjct: 196 AFGVHVACIEPGLFKTNLSDPEKTAEKKLAIWKHLSPDIKQQYGESYIEKSLEQLKGTAS 255
Query: 970 QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMM 1122
+ +LSLV CM+HALTS P+TRY+ G DAK F++P+S++P L D ++
Sbjct: 256 FVNVDLSLVVECMDHALTSLFPKTRYAAGKDAKTFWIPLSHMPAVLQDFLL 306
>ref|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos
taurus].
Length = 344
Score = 175 bits (444), Expect = 6e-44
Identities = 112/273 (41%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Frame = +1
Query: 274 VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLET 441
V + K V ITGCDSGFG LA+ L G V A CL + G ++L SDRL T
Sbjct: 50 VDPVGSKAVLITGCDSGFGFSLAKHLHSEGFLVFAGCLMKDKGSDGVKELDSMKSDRLRT 109
Query: 442 VLLDVTKTESVAAAKEWVKERVGD--RGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVN 615
V L+V K+E V A E ++ + D +GLWGLVNNAGI E+ + + + + +VN
Sbjct: 110 VQLNVCKSEEVDKAAEVIRSSLEDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 168
Query: 616 LLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVS-LFGGGYCLSKYGVEAFSDSLRRELSY 792
L G V VT LPL+R+ KGRVVN+SS+MGR++ + YC++K+GVEAFSD LR E+
Sbjct: 169 LWGTVRVTKAFLPLIRRAKGRVVNISSMMGRMANVARSPYCITKFGVEAFSDCLRYEMHP 228
Query: 793 FGVKVAVIEPGFFMTNMTAAEVFNG--NLQA----AWQQASPEVKDLYGDAFVANFMKTY 954
GVKV+V+EPG F + A ++ G +QA W++ V+ YG + +
Sbjct: 229 LGVKVSVVEPGNF---IAATSLYGGTERIQAIANKMWEELPEVVRQDYGRKYFDEKVARM 285
Query: 955 DLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSP 1053
+ S + S V + HALT+ P TRY P
Sbjct: 286 ESYCTSGSTDTSPVIKAVTHALTATTPYTRYHP 318
>ref|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos taurus].
Length = 388
Score = 169 bits (428), Expect = 5e-42
Identities = 104/280 (37%), Positives = 162/280 (57%), Gaps = 4/280 (1%)
Frame = +1
Query: 292 KYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKT 465
K V ITGCDSGFG+ LA+ LD G V A L EQG A++LR+ S L + L++T T
Sbjct: 84 KAVLITGCDSGFGHGLAKYLDELGFTVFAGVLDEQGSGAEELRRTCSKNLSVLQLNITNT 143
Query: 466 ESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNLLGMVDVTLQ 645
+ + AA VKE++ ++GLW ++NNAG+ E + ++ + VN G V+VT
Sbjct: 144 QEIKAAYSKVKEKLQNKGLWAVINNAGVLGLPTDGELIPMTEYKRCMAVNFFGAVEVTKV 203
Query: 646 LLPLVRKTKGRVVNVSSVMGRVSLFG-GGYCLSKYGVEAFSDSLRRELSYFGVKVAVIEP 822
LPL+RK+KGR+VN+SS+ G V + Y SK + FS LR+ELS +GVKV+VI+P
Sbjct: 204 FLPLLRKSKGRLVNISSMAGGVPMQKMAAYGSSKAALIMFSSILRQELSKWGVKVSVIQP 263
Query: 823 GFFMTNMT-AAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKPQWSGNLSLVT 999
G F TN++ ++++ + SPEV++ YG ++ + +L+K ++S V
Sbjct: 264 GGFKTNISGTSQMWEKLERTVLDNLSPEVQEDYGQDYILSERSFLNLMKTSTDPDISPVL 323
Query: 1000 NCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLM 1119
+ HA+++ P Y+PG + + S PT + D +
Sbjct: 324 LDVRHAISAQSPFAFYAPGKLSYPWLCFASISPTGIFDYL 363
>ref|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus].
Length = 404
Score = 136 bits (342), Expect = 4e-32
Identities = 94/275 (34%), Positives = 136/275 (49%), Gaps = 8/275 (2%)
Frame = +1
Query: 298 VFITGCDSGFGNLLARQLDLRGLRVLAACL--TEQGAQQLRKQTSDRLETVLLDVTKTES 471
V ITGCDSGFGN A++LD G VLA L GA +LR S RL+ + +D+TK
Sbjct: 85 VLITGCDSGFGNATAKKLDTMGFTVLATVLDLNSPGALELRACCSSRLKLLQMDLTKPGD 144
Query: 472 VAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNLLGMVDVTLQLL 651
++ E+ K GLWGLVNNAG + +A E F ++VN G +++T LL
Sbjct: 145 ISRVLEFTKVHTPSTGLWGLVNNAGQNIFVADAELCPVATFRTCMEVNFFGALEMTKGLL 204
Query: 652 PLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRR-----ELSYFGVKVAVI 816
PL+R++ GR+V VSS G + CL+ YG + +L EL +GVKV++I
Sbjct: 205 PLLRRSSGRIVTVSSPAGDMPF----PCLAAYGTSKAALALLMGNFSCELLPWGVKVSII 260
Query: 817 EPGFFMT-NMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKPQWSGNLSL 993
+P F T ++ + Q E+ YG+ ++ + + Q +LS
Sbjct: 261 QPACFKTESVKDVHQWEERKQQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQALPDLSP 320
Query: 994 VTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLP 1098
V + + AL + P RY PG Y YLP
Sbjct: 321 VVDAITDALLAAQPLRRYYPGHGLGLIYFIHYYLP 355
>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
taurus].
Length = 325
Score = 87.8 bits (216), Expect = 2e-17
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 11/210 (5%)
Frame = +1
Query: 250 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLA----ACLTEQGAQQLRK 417
+W R R +++R+ V ITG SG G AR G R++ A E+ +Q+L
Sbjct: 42 QWLRMR---AYVRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAA 98
Query: 418 QTSDRLET-----VLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLT 582
+ ++T V D+ ++A A + + G + L+NNAGI A +
Sbjct: 99 SRAPEVQTHKPCTVTFDLADPGAIAGAASEILQCFGHVDV--LINNAGISYRGAIVDTSP 156
Query: 583 KQDFMVMLDVNLLGMVDVTLQLLP-LVRKTKGRVVNVSSVMGRVSL-FGGGYCLSKYGVE 756
D VM + N G V +T LLP ++R+ +G VV +SS+ G++SL F Y SK+ +
Sbjct: 157 DVDKRVM-ETNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQ 215
Query: 757 AFSDSLRRELSYFGVKVAVIEPGFFMTNMT 846
AF D LR E+ ++V VI PG+ TN++
Sbjct: 216 AFFDCLRAEVEQHDIEVTVISPGYIHTNLS 245
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 87.0 bits (214), Expect = 3e-17
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 11/210 (5%)
Frame = +1
Query: 250 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLA----ACLTEQGAQQLRK 417
+W R R +++R+ V ITG SG G AR G R++ A E+ +Q+L
Sbjct: 42 QWLRMR---AYVRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAA 98
Query: 418 QTSDRLET-----VLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLT 582
+ ++T V D+ ++A A + + G + L+NNAGI A +
Sbjct: 99 SRAPGVQTHKPCTVTFDLADPGAIAGAASEILQCFGHVDV--LINNAGISYRGAIVDTSP 156
Query: 583 KQDFMVMLDVNLLGMVDVTLQLLP-LVRKTKGRVVNVSSVMGRVSL-FGGGYCLSKYGVE 756
D VM + N G V +T LLP ++R+ +G VV +SS+ G++SL F Y SK+ +
Sbjct: 157 DVDKRVM-ETNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQ 215
Query: 757 AFSDSLRRELSYFGVKVAVIEPGFFMTNMT 846
AF D LR E+ ++V VI PG+ TN++
Sbjct: 216 AFFDCLRAEVEQHDIEVTVISPGYIHTNLS 245
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,976,270
Number of extensions: 1329626
Number of successful extensions: 5711
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 5631
Number of HSP's successfully gapped: 50
Length of query: 402
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 298
Effective length of database: 14,240,222
Effective search space: 4243586156
Effective search space used: 4243586156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012376
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012376
(1208 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 460 e-129
Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 451 e-127
Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 395 e-110
Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 389 e-108
Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 343 1e-94
Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 315 6e-86
Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 301 6e-82
Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 168 1e-41
Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 159 4e-39
Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 129 7e-30
>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
4 isoform 1 [Canis familiaris].
Length = 317
Score = 460 bits (1183), Expect = e-129
Identities = 224/313 (71%), Positives = 254/313 (81%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RW RERQVVSHL+DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+E VGDRGLWGLVNNAGI P A
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
PNEWLTK DFM +LDVNLLG+V+VTL LL LVRK +GRVVNVSS+MGR+SL GGGYC+SK
Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRREL+YFGVKVAVIEPG+F TN+T E + Q W + SPEV++ YG+
Sbjct: 181 YGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDRLSPEVREAYGE 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
F+A+ K + LK NL LVTNCMEHALT+CHPRTRYSPGWDAK YLPMSYLPT
Sbjct: 241 EFLASARKPIEKLKSMCDTNLYLVTNCMEHALTACHPRTRYSPGWDAKLLYLPMSYLPTL 300
Query: 1105 LMDLMMCYGAP*P 1143
L+D M+ + +P P
Sbjct: 301 LVDTMIYWNSPRP 313
>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
4 isoform 2 [Canis familiaris].
Length = 319
Score = 451 bits (1161), Expect = e-127
Identities = 223/315 (70%), Positives = 252/315 (80%), Gaps = 2/315 (0%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RW RERQVVSHL+DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+E VGDRGLWGLVNNAGI P A
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTA 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
PNEWLTK DFM +LDVNLLG+V+VTL LL LVRK +GRVVNVSS+MGR+SL GGGYC+SK
Sbjct: 121 PNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCISK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRREL+YFGVKVAVIEPG+F TN+T E + Q W + SPEV++ YG+
Sbjct: 181 YGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDRLSPEVREAYGE 240
Query: 925 --AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLP 1098
A + +LLK NL LVTNCMEHALT+CHPRTRYSPGWDAK YLPMSYLP
Sbjct: 241 EHARTPGKLAVKELLKSMCDTNLYLVTNCMEHALTACHPRTRYSPGWDAKLLYLPMSYLP 300
Query: 1099 TFLMDLMMCYGAP*P 1143
T L+D M+ + +P P
Sbjct: 301 TLLVDTMIYWNSPRP 315
>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
familiaris].
Length = 323
Score = 395 bits (1016), Expect = e-110
Identities = 195/321 (60%), Positives = 241/321 (75%), Gaps = 8/321 (2%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RW RERQVVSHL DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+ERVGDRGLWGLVNNAGI P
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
+EWL + ++ + VNL G+++VTL +LPL+R+ +GR+VNVSS++GR++ FGG YC SK
Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSD+LRREL +FGVK++++EPG+F T MT L+ AW++ +K+ YG
Sbjct: 181 YGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERLKQAWEEVPTHIKEAYGQ 240
Query: 925 AFVANFMKTY--------DLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYL 1080
F A+F+ Y LLK S NL+LVT+CMEHALTS HPRTRYS GWD++FF++
Sbjct: 241 KFFASFLFLYTDHNGVKQGLLK--CSTNLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFI 298
Query: 1081 PMSYLPTFLMDLMMCYGAP*P 1143
P+SYLPT L D ++ P P
Sbjct: 299 PLSYLPTSLADYILTRSWPKP 319
>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
familiaris].
Length = 317
Score = 389 bits (999), Expect = e-108
Identities = 189/313 (60%), Positives = 234/313 (74%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RW RERQVVSHL DKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GAQQLR QTSDRL+TV+LDVTKTES+ AA +WV+ERVGDRGLWGLVNNAGI P
Sbjct: 61 LTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHC 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
+EWL + ++ + VNL G+++VTL +LPL+R+ +GR+VNVSS++GR++ FGG YC SK
Sbjct: 121 YSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSD+LRREL +FGVK++++EPG+F T MT L+ AW++ +K+ YG
Sbjct: 181 YGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERLKQAWEEVPTHIKEAYGQ 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
F + S NL+LVT+CMEHALTS HPRTRYS GWD++FF++P+SYLPT
Sbjct: 241 KFFDAHHNGVKQGLLKCSTNLNLVTDCMEHALTSVHPRTRYSAGWDSQFFFIPLSYLPTS 300
Query: 1105 LMDLMMCYGAP*P 1143
L D ++ P P
Sbjct: 301 LADYILTRSWPKP 313
>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
[Canis familiaris].
Length = 313
Score = 343 bits (881), Expect = 1e-94
Identities = 164/298 (55%), Positives = 221/298 (74%)
Frame = +1
Query: 250 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
RW + +V +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC TE+GAQ+L++ TS
Sbjct: 12 RWLKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSY 71
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL+T LLDVT+TES+ AA +WV+++VG++GLW LVNNAGI +P PNEWLTK+DF+ +++
Sbjct: 72 RLQTTLLDVTRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVIN 131
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL+G+++VTL +LP+V+K +GRVVN+SS GRV+L GGGYC+SK+GVEAFSDS+RREL
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVALIGGGYCVSKFGVEAFSDSIRRELH 191
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
YFGVKV++IEPG + T++ E ++ W++ E KD YG+ + N+ +
Sbjct: 192 YFGVKVSIIEPGNYRTSILGKEDMVSRMRKLWERLPQETKDSYGEEYFRNYTDKLKNMMQ 251
Query: 970 QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMMCYGAP*P 1143
+ VTN MEHA+ S PR RY+PG DAK YLP++ LPT + D ++ P P
Sbjct: 252 SAEPRIREVTNSMEHAIVSRSPRVRYNPGLDAKLLYLPLAKLPTPVTDFILSRYLPRP 309
>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
[Canis familiaris].
Length = 339
Score = 315 bits (807), Expect = 6e-86
Identities = 156/320 (48%), Positives = 219/320 (68%), Gaps = 1/320 (0%)
Frame = +1
Query: 202 AMWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 381
AMW W R++Q + D +VFITGCDSGFG LLA +LD RG RVLA+
Sbjct: 21 AMWLPLLLGVLLWAVLWWLRDQQSLP-ASDAFVFITGCDSGFGRLLALRLDQRGFRVLAS 79
Query: 382 CLTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPL 561
CLT GA+ L++ S RL T LLDVT+ +SV A +WV+ VG+ GL+GLVNNAG+ +
Sbjct: 80 CLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNNAGVAGII 139
Query: 562 APNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLS 741
P WLT+ DF +L+VN LG + VTL LLPL+++++GRVVN+SSV+GR++ GGGYC+S
Sbjct: 140 GPTPWLTQDDFHRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGRLAANGGGYCVS 199
Query: 742 KYGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYG 921
K+G+EAFSDSLRR++++FGV+V+++EPGFF T +T E LQ W + P + YG
Sbjct: 200 KFGLEAFSDSLRRDVAHFGVRVSIVEPGFFRTPVTNLEHLENTLQECWARLPPSTQAHYG 259
Query: 922 DAFVANFMKTYD-LLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLP 1098
+AF+ +++ ++ +L+ V+ C+EHALT+ +PRTRYSPGWDAK +LP SYLP
Sbjct: 260 EAFLPKYLQVQQHIMSLICDPDLTKVSRCLEHALTARYPRTRYSPGWDAKLLWLPASYLP 319
Query: 1099 TFLMDLMMCYGAP*PC*VLY 1158
L+D ++ + P P +Y
Sbjct: 320 ASLVDAVLTWVLPKPAQAVY 339
>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase
[Canis familiaris].
Length = 753
Score = 301 bits (772), Expect = 6e-82
Identities = 146/294 (49%), Positives = 206/294 (70%), Gaps = 4/294 (1%)
Frame = +1
Query: 253 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE + L+ +TS+
Sbjct: 450 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTALKAETSE 509
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAG+ LAP +WLT +D+ ++
Sbjct: 510 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVLGVLAPTDWLTVEDYREPIE 569
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL G++ VTL LLPLV+K +GR++NVSS+ GR+++ GGGY SKY VE F+DSLRR++
Sbjct: 570 VNLFGLISVTLNLLPLVKKARGRIINVSSIGGRLAISGGGYTPSKYAVEGFNDSLRRDMK 629
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
FGV V+ IEPG F T ++ A W+ SP++K YG++++ K+ D LK
Sbjct: 630 AFGVHVSCIEPGLFKTGLSDPIKATEKKLAIWKHLSPDIKQQYGESYIE---KSLDKLKD 686
Query: 970 QWS---GNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMM 1122
S +LSLV CM+HALTS P+TRY+ G DAK F++P+S++P L D ++
Sbjct: 687 TTSFVNVDLSLVVECMDHALTSLFPKTRYAAGRDAKTFWIPLSHMPAVLQDFLL 740
>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
[Canis familiaris].
Length = 299
Score = 168 bits (425), Expect = 1e-41
Identities = 103/270 (38%), Positives = 151/270 (55%), Gaps = 9/270 (3%)
Frame = +1
Query: 271 VVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLE 438
++ + K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL
Sbjct: 5 LLKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLR 64
Query: 439 TVLLDVTKTESVAAAKEWVKERVGD--RGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDV 612
T+ L+V K E V E V+ + D +G+WGLVNNAGI E+ + + + + +V
Sbjct: 65 TIQLNVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGIST-FGEVEFTSMETYKEVAEV 123
Query: 613 NLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGG-YCLSKYGVEAFSDSLRRELS 789
NL G V +T LPL+R+ +GR+VN+SS++GR++ YC++K+GVEAFSD LR E+
Sbjct: 124 NLWGTVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMY 183
Query: 790 YFGVKVAVIEPGFFM--TNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLL 963
GVKV+V+EPG F+ T++ E W + V+ YG + +
Sbjct: 184 PLGVKVSVVEPGNFIAATSLYNPERIQAIADKMWDELPEVVRKDYGRKYFDEKIARMQAY 243
Query: 964 KPQWSGNLSLVTNCMEHALTSCHPRTRYSP 1053
S ++S V + + HALTS P TRY P
Sbjct: 244 CNSGSTDISPVVSAVTHALTSRSPYTRYHP 273
>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis
familiaris].
Length = 382
Score = 159 bits (403), Expect = 4e-39
Identities = 104/282 (36%), Positives = 164/282 (58%), Gaps = 8/282 (2%)
Frame = +1
Query: 292 KYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKT 465
K V ITG DSGFG+ L++ LD G V L E+G A++LR+ S RL + +D+T
Sbjct: 84 KAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAEELRRTCSKRLSVLQMDITDQ 143
Query: 466 ESVAAAKEWVKERVGDRGLWGLVNNAG-ICMPLAPNEWLTKQDFMVMLDVNLLGMVDVTL 642
+ + A V E++ DRGLW +VNNAG IC+P A E + D+ + VN G V+VT
Sbjct: 144 QQIKDAHSKVVEKLQDRGLWAVVNNAGIICLP-ADGELIPMTDYKKCMAVNFFGAVEVTK 202
Query: 643 QLLPLVRKTKGRVVNVSSVMGRVSLFG-GGYCLSKYGVEAFSDSLRRELSYFGVKVAVIE 819
LPL+RK+KGR+VN+SS+ V + Y SK + FS +R+ELS +GVKV+VI+
Sbjct: 203 AFLPLLRKSKGRLVNISSMAAGVPMEKLAAYSSSKAALTMFSAVMRQELSKWGVKVSVIQ 262
Query: 820 PGFFMTNMT-AAEVFNGNLQAAWQQASPEVKDLYGDAFV---ANFMKTYDLLKPQWSGNL 987
PG F TN+ +E+++ + S +V++ YG ++ N++K+ ++ + + ++
Sbjct: 263 PGGFRTNIAGTSEMWSKLEKNILDHLSSDVEEDYGKDYILQQRNYLKSINI---KTNTDI 319
Query: 988 SLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMD 1113
S V + HA+++ P Y+PG A +S+ PT + D
Sbjct: 320 SPVLQDIRHAVSAKSPFAFYAPGALAYCLLFFVSFSPTGIFD 361
>ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2
(11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2)
(11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid
dehydrogenase) [Canis familiaris].
Length = 323
Score = 129 bits (323), Expect = 7e-30
Identities = 93/270 (34%), Positives = 132/270 (48%), Gaps = 8/270 (2%)
Frame = +1
Query: 313 CDSGFGNLLARQLDLRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKTESVAAAK 486
CDSGFG A++LD G VLA L G A +LR S RL + +D+TK ++ A
Sbjct: 8 CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67
Query: 487 EWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRK 666
E+ K GLWGLVNNAG +A E F ++VN G +++T LLPL+R+
Sbjct: 68 EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127
Query: 667 TKGRVVNVSSVMGRVSL-FGGGYCLSKYGVEAFSDSLRRELSYFGVKVAVIEPGFFMT-N 840
++GR+V V S G + Y SK + D+ EL +GVKV+VI+PG F T +
Sbjct: 128 SRGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKTES 187
Query: 841 MTAAEVFNGNLQAAWQQASPEVKDLYGDAFV----ANFMKTYDLLKPQWSGNLSLVTNCM 1008
+ + Q E+ YG+ ++ F+ + L P +LS V + +
Sbjct: 188 VRNVGHWEQRKQLLLASLPRELLQAYGEDYIEHLHGQFLHSLRLALP----DLSPVVDAI 243
Query: 1009 EHALTSCHPRTRYSPGWDAKFFYLPMSYLP 1098
AL + PR RY PG Y YLP
Sbjct: 244 TDALLAAQPRRRYYPGRGLGLMYFIHYYLP 273
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,886,962
Number of extensions: 1373769
Number of successful extensions: 5933
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 5861
Number of HSP's successfully gapped: 44
Length of query: 402
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 297
Effective length of database: 15,374,224
Effective search space: 4566144528
Effective search space used: 4566144528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012376
(1208 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355529.1| PREDICTED: retinol dehydrogenase 16-like [Su... 604 e-173
Alignment gi|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like iso... 599 e-172
Alignment gi|XP_003355527.1| PREDICTED: retinol dehydrogenase 16-like iso... 599 e-172
Alignment gi|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus sc... 508 e-144
Alignment gi|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen... 391 e-109
Alignment gi|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen... 391 e-109
Alignment gi|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reducta... 333 1e-91
Alignment gi|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like... 311 5e-85
Alignment gi|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR famil... 303 1e-82
Alignment gi|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR famil... 252 3e-67
>ref|XP_003355529.1| PREDICTED: retinol dehydrogenase 16-like [Sus scrofa].
Length = 317
Score = 604 bits (1557), Expect = e-173
Identities = 299/317 (94%), Positives = 300/317 (94%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGIC PLA
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICTPLA 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
P+EWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PSEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF
Sbjct: 241 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 300
Query: 1105 LMDLMMCYGAP*PC*VL 1155
LMDLMMCYGAP P VL
Sbjct: 301 LMDLMMCYGAPRPAKVL 317
>ref|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa].
Length = 317
Score = 599 bits (1545), Expect = e-172
Identities = 297/317 (93%), Positives = 300/317 (94%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRRELSYFGVKVA+IEPGFFMTNMTAAEVF+GNLQAAWQQASPEVKDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFMTNMTAAEVFHGNLQAAWQQASPEVKDLYGD 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF
Sbjct: 241 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 300
Query: 1105 LMDLMMCYGAP*PC*VL 1155
L+DLMM YGAP P VL
Sbjct: 301 LVDLMMYYGAPRPAKVL 317
>ref|XP_003355527.1| PREDICTED: retinol dehydrogenase 16-like isoform 1 [Sus scrofa].
Length = 317
Score = 599 bits (1545), Expect = e-172
Identities = 297/317 (93%), Positives = 300/317 (94%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWLYLVVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRRELSYFGVKVA+IEPGFFMTNMTAAEVF+GNLQAAWQQASPEVKDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFMTNMTAAEVFHGNLQAAWQQASPEVKDLYGD 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF
Sbjct: 241 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 300
Query: 1105 LMDLMMCYGAP*PC*VL 1155
L+DLMM YGAP P VL
Sbjct: 301 LVDLMMYYGAPRPAKVL 317
>ref|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus scrofa].
Length = 317
Score = 508 bits (1309), Expect = e-144
Identities = 254/313 (81%), Positives = 271/313 (86%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC
Sbjct: 1 MWVYLAVLVGLYYLLRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGI + A
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGISVISA 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
PNEWLTKQDF+ +LDVNLLGMVDVTLQLLPLVRKT+GRVVNVSSVMGRVSLFGGGYCLSK
Sbjct: 121 PNEWLTKQDFVKILDVNLLGMVDVTLQLLPLVRKTRGRVVNVSSVMGRVSLFGGGYCLSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRRELSYFGVKVA+IEPGFF TN+T E + + AW QASPE+KDLYGD
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGFFKTNVTKPEAISQGYKTAWNQASPEIKDLYGD 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
F+A K ++ + +LSLVT+CMEHALTSCHPRTRYSPGWDAK FYLPMSYLPTF
Sbjct: 241 TFLALCEKAVCSMETSCNQDLSLVTDCMEHALTSCHPRTRYSPGWDAKLFYLPMSYLPTF 300
Query: 1105 LMDLMMCYGAP*P 1143
L+DLM+ YGAP P
Sbjct: 301 LVDLMIYYGAPRP 313
>ref|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform 2
[Sus scrofa].
Length = 337
Score = 391 bits (1004), Expect = e-109
Identities = 196/316 (62%), Positives = 237/316 (75%), Gaps = 3/316 (0%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RW RERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 21 MWLYLAVLVGLYYLLRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 80
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTEQGAQQLRKQTSDRLETVLLDVTKTES+AAA +WVKERVGDRGLWGLVNNAG PL
Sbjct: 81 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 140
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
EWL + ++ L VNL+G+ +VTL +LPLV+K +GR+VNVSS++GRV+ FG Y SK
Sbjct: 141 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 200
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
+GVEAFSD LR EL +FGVKV+++EPG+F T MT + + ++ W++ +KD YG
Sbjct: 201 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 260
Query: 925 AFVANFMKTYDLLK---PQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYL 1095
F F +D++K S NL+LVT+CMEHALTS HPRTRYS GWDA+FF++P+SYL
Sbjct: 261 KF---FDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 317
Query: 1096 PTFLMDLMMCYGAP*P 1143
PT L D ++ P P
Sbjct: 318 PTSLADYILTRSWPKP 333
>ref|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform 1
[Sus scrofa].
Length = 317
Score = 391 bits (1004), Expect = e-109
Identities = 196/316 (62%), Positives = 237/316 (75%), Gaps = 3/316 (0%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RW RERQ+VSHL DKYVFITGCDSGFGNLLARQLD+RGLRVLAAC
Sbjct: 1 MWLYLAVLVGLYYLLRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTEQGAQQLRKQTSDRLETVLLDVTKTES+AAA +WVKERVGDRGLWGLVNNAG PL
Sbjct: 61 LTEQGAQQLRKQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLC 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
EWL + ++ L VNL+G+ +VTL +LPLV+K +GR+VNVSS++GRV+ FG Y SK
Sbjct: 121 ITEWLKTETWIHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFGAVYSSSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
+GVEAFSD LR EL +FGVKV+++EPG+F T MT + + ++ W++ +KD YG
Sbjct: 181 HGVEAFSDVLRCELQHFGVKVSIVEPGYFRTGMTDVQKSSEAMKQVWKEVPAHIKDTYGQ 240
Query: 925 AFVANFMKTYDLLK---PQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYL 1095
F F +D++K S NL+LVT+CMEHALTS HPRTRYS GWDA+FF++P+SYL
Sbjct: 241 KF---FDAYHDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAQFFFIPLSYL 297
Query: 1096 PTFLMDLMMCYGAP*P 1143
PT L D ++ P P
Sbjct: 298 PTSLADYILTRSWPKP 313
>ref|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reductase family 9C member
7-like [Sus scrofa].
Length = 313
Score = 333 bits (853), Expect = 1e-91
Identities = 160/298 (53%), Positives = 218/298 (73%)
Frame = +1
Query: 250 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
RW + VV +L DKYVFITGCDSGFGNLLARQL RG+RVLAAC TE+GAQ+L++ TS
Sbjct: 12 RWFKNCNVVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTEEGAQKLQQDTSY 71
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL+T LLDVTKTES+ AA +WV+++V ++GLW LVNNAG+ +P PNEWLTK+DF+ +++
Sbjct: 72 RLQTTLLDVTKTESIKAAAQWVRDQVSEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL+G+++VTL +LP+V+K +GRVVN+SS GRV++ GGGYC+SK+GVEAFSDS+RREL
Sbjct: 132 VNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELH 191
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
YFGVKV++IEPG + T++ E ++ W + E +D YG+ + + +
Sbjct: 192 YFGVKVSIIEPGNYRTSILGKESLEMRMRKMWARLPQETRDSYGEEYFHIYTDKLKNMMQ 251
Query: 970 QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMMCYGAP*P 1143
+ VTN MEHA+ S PR RY+PG DAK Y+P++ LPT + D ++ P P
Sbjct: 252 LAEPRIRDVTNSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKLPTPVTDFILSRYLPRP 309
>ref|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like [Sus scrofa].
Length = 318
Score = 311 bits (797), Expect = 5e-85
Identities = 152/301 (50%), Positives = 213/301 (70%), Gaps = 1/301 (0%)
Frame = +1
Query: 259 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 438
R+RQ + D +VFITGCDSGFG LLA +LD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-TSDAFVFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 439 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNL 618
T LLDVT +S+ A +WV+ VG+ GL+GLVNNAG+ + P W T++DF +L+VN
Sbjct: 78 TTLLDVTDPQSIQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQQVLNVNT 137
Query: 619 LGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 798
LG + VTL LLPL+R+ +GRVVNVSSV+GR++ GGGYC+SK+GVEAFSDSLRR+++ FG
Sbjct: 138 LGPIGVTLALLPLLRQARGRVVNVSSVLGRLAANGGGYCVSKFGVEAFSDSLRRDVAPFG 197
Query: 799 VKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMK-TYDLLKPQW 975
++V+++EPGFF T +T E + ++ W + P + LYG+A++ +++ + +
Sbjct: 198 IRVSIVEPGFFQTPITNPESLDNIIKTRWARLPPATQALYGEAYLTKYLRLQHHFMNLLS 257
Query: 976 SGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMMCYGAP*PC*VL 1155
+L+ V+ C+EHALT+ HPRTRYSPGWDAK +LP SYLP L+D + + P P +
Sbjct: 258 DLDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVFTWILPKPAQAV 317
Query: 1156 Y 1158
Y
Sbjct: 318 Y 318
>ref|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like isoform 1
[Sus scrofa].
Length = 319
Score = 303 bits (777), Expect = 1e-82
Identities = 144/291 (49%), Positives = 201/291 (69%), Gaps = 1/291 (0%)
Frame = +1
Query: 253 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAGI LAP +WLT +D+ ++
Sbjct: 76 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIE 135
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL G+++VTL +LPLV+K +GRV+NVSS+ GR++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYAPSKYAVEGFNDSLRRDMK 195
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
FGV VA IEPG F T + A W SP+++ YG+ ++ + K
Sbjct: 196 AFGVHVACIEPGLFKTGLADPVKTAEKKLAIWNHLSPDIRQQYGEGYIEKCLSKLKGSKS 255
Query: 970 QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMM 1122
+ +LSLV CM+HALTS P+TRY+ G DAK F++P+S++P L D ++
Sbjct: 256 FMNVDLSLVVECMDHALTSLFPKTRYAAGKDAKTFWIPLSHMPAVLQDFLL 306
>ref|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like,
partial [Sus scrofa].
Length = 245
Score = 252 bits (644), Expect = 3e-67
Identities = 118/228 (51%), Positives = 162/228 (71%), Gaps = 1/228 (0%)
Frame = +1
Query: 253 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAGI LAP +WLT +D+ ++
Sbjct: 76 RLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIE 135
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL G+++VTL +LPLV+K +GRV+NVSS+ GR++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYAPSKYAVEGFNDSLRRDMK 195
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFV 933
FGV VA IEPG F T + A W SP+++ YG+ ++
Sbjct: 196 AFGVHVACIEPGLFKTGLADPVKTAEKKLAIWNHLSPDIRQQYGEGYI 243
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,358,623
Number of extensions: 862595
Number of successful extensions: 3852
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 3790
Number of HSP's successfully gapped: 42
Length of query: 402
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,829,335
Effective search space: 2657629835
Effective search space used: 2657629835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012376
(1208 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus muscul... 437 e-122
Alignment gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]. 436 e-122
Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]. 432 e-121
Alignment gi|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus mu... 431 e-121
Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]. 429 e-120
Alignment gi|NP_001144221.1| retinol dehydrogenase 7 [Mus musculus]. 429 e-120
Alignment gi|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain de... 425 e-119
Alignment gi|NP_038814.1| 17-beta-hydroxysteroid dehydrogenase type 6 [Mu... 388 e-108
Alignment gi|NP_081577.1| short-chain dehydrogenase/reductase family 9C m... 331 8e-91
Alignment gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus]. 309 2e-84
>ref|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus musculus].
Length = 317
Score = 437 bits (1123), Expect = e-122
Identities = 209/306 (68%), Positives = 254/306 (83%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GA++LR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGI P
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
PNEW+ KQDF +LDVNLLGM++VTL +LPLVRK +GRVVNVSSVMGR+S FGGGYC+SK
Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRRELSYFGVKVA+IEPG F T +T+++ + N + W +AS EVK++YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGGFKTCVTSSDRLSSNTKMIWDKASSEVKEIYGE 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
F+ ++K + L + + +LS+VT+CMEHALT+CHPRTRYS GWDAKF +LP+SYLPTF
Sbjct: 241 KFLLFYLKNLNELDKRCNKDLSVVTDCMEHALTACHPRTRYSAGWDAKFLFLPLSYLPTF 300
Query: 1105 LMDLMM 1122
L+D ++
Sbjct: 301 LVDALL 306
>ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus].
Length = 317
Score = 436 bits (1121), Expect = e-122
Identities = 208/306 (67%), Positives = 251/306 (82%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW R+ R RQVVSHL+DKYVFITGCDSGFG LLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GA++LR +TSDRLETV+LDVTKTES+ A +WVKE VG+RGLWGLVNNAGI P
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
PNEW+ KQDF +LDVNLLGM++VTL +LPLVRK +GRVVNVSSVMGRVSLFGGGYC+SK
Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRVSLFGGGYCISK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRRELSYFGVKVA+IEPGFF+T +T++ N Q W Q S E++++YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGE 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
++A+++K + L + + +LS VT+CMEHALT+CHPRTRYS GWDAK FYLP+SYLPTF
Sbjct: 241 KYLASYLKRLNKLDKRCNKDLSGVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYLPTF 300
Query: 1105 LMDLMM 1122
L+D ++
Sbjct: 301 LVDALL 306
>ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus].
Length = 317
Score = 432 bits (1112), Expect = e-121
Identities = 202/288 (70%), Positives = 250/288 (86%)
Frame = +1
Query: 259 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 438
RERQVVS+L+DKYVFITGCDSGFGNLLARQLD RG+RVLAACLTE+GA++LR +TSDRLE
Sbjct: 19 RERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKGAEELRNKTSDRLE 78
Query: 439 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNL 618
TV+LDVTKTES+ A +WVKERVG+RGLWGLVNNAGI +P PNEW+ KQDF +LDVNL
Sbjct: 79 TVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSGPNEWMKKQDFAHVLDVNL 138
Query: 619 LGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 798
LG+++VTL +LPLVRK +GRV+NV+SV+GRVSL GG YC+SKYGVEAFSDSLRRELSYFG
Sbjct: 139 LGLIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISKYGVEAFSDSLRRELSYFG 198
Query: 799 VKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKPQWS 978
VKVA+IEPGFF+T +T++ N Q W Q S E++++YG+ ++A+++K + L + +
Sbjct: 199 VKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNELDKRCN 258
Query: 979 GNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMM 1122
+LSLVT+CMEHALT+CHPRTRYS GWDAK FYLP+SYLPTFL+D ++
Sbjct: 259 KDLSLVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYLPTFLVDALL 306
>ref|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus musculus].
Length = 318
Score = 431 bits (1108), Expect = e-121
Identities = 206/304 (67%), Positives = 254/304 (83%), Gaps = 1/304 (0%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVSLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GA++LR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGI +PL
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFG-GGYCLS 741
++W+ KQ+F +LDVNLLGM++VTL +LPLVRK +GRVVNVSS+MGRVSL G GGYC+S
Sbjct: 121 LSQWMNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCIS 180
Query: 742 KYGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYG 921
KYGVEAFSDSLRRELSYFGVKVA+IEPGFF+T M ++ + N Q W Q S E++++YG
Sbjct: 181 KYGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGMASSARLSSNTQMLWDQTSSEIREIYG 240
Query: 922 DAFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPT 1101
+ ++A ++K+ + L + + +LSLVT+CMEHALT+CHPRTRYS GWDAK F++P+SYLPT
Sbjct: 241 EKYLAFYLKSLNELDKRCNKDLSLVTDCMEHALTACHPRTRYSAGWDAKLFFIPLSYLPT 300
Query: 1102 FLMD 1113
FL+D
Sbjct: 301 FLVD 304
>ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus].
Length = 316
Score = 429 bits (1102), Expect = e-120
Identities = 210/313 (67%), Positives = 253/313 (80%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GA+QLR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGIC+ A
Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGICV-FA 119
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
NEWL K+DF +LDVNLLGM++VTL +LPLVRK +GRVVN+SS MGRVSL GGGYC+SK
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRRE+SYFGVKVA+IEPG F TN++ E + +++ W Q S EVK++Y
Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNYERLSHSIEKLWDQTSSEVKEVYDK 239
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
F+ +++K L S +LS+VT+CMEHALT+CHPRTRYS GWDAK FYLP+SY+PTF
Sbjct: 240 NFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYMPTF 299
Query: 1105 LMDLMMCYGAP*P 1143
L+D M+ + + P
Sbjct: 300 LVDAMLYWSSVKP 312
>ref|NP_001144221.1| retinol dehydrogenase 7 [Mus musculus].
Length = 316
Score = 429 bits (1102), Expect = e-120
Identities = 210/313 (67%), Positives = 253/313 (80%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW R+ RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GA+QLR +TSDRLETV+LDVTKTES+ AA +WVKERVG+RGLWGLVNNAGIC+ A
Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGICV-FA 119
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
NEWL K+DF +LDVNLLGM++VTL +LPLVRK +GRVVN+SS MGRVSL GGGYC+SK
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRRE+SYFGVKVA+IEPG F TN++ E + +++ W Q S EVK++Y
Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNVSNYERLSHSIEKLWDQTSSEVKEVYDK 239
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
F+ +++K L S +LS+VT+CMEHALT+CHPRTRYS GWDAK FYLP+SY+PTF
Sbjct: 240 NFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTACHPRTRYSAGWDAKLFYLPLSYMPTF 299
Query: 1105 LMDLMMCYGAP*P 1143
L+D M+ + + P
Sbjct: 300 LVDAMLYWSSVKP 312
>ref|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like [Mus
musculus].
Length = 318
Score = 425 bits (1092), Expect = e-119
Identities = 200/314 (63%), Positives = 255/314 (81%), Gaps = 1/314 (0%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW R+ RERQVV HL+DKYVFITGC SGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
E+GA++LR++TS+RLETV+LDVTKTE++ AA +WVKERVG+RGLWGLVNNAGI +P
Sbjct: 61 RKEEGAEELRRKTSERLETVILDVTKTENIVAATQWVKERVGNRGLWGLVNNAGISVPSG 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFG-GGYCLS 741
PNEW+ KQDF +LDVNLLG+++VTL +LPLVRK +GRVVNVSS++GRVSL G GGYC+S
Sbjct: 121 PNEWMKKQDFASVLDVNLLGLIEVTLSMLPLVRKARGRVVNVSSILGRVSLGGSGGYCIS 180
Query: 742 KYGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYG 921
KYG+EAFSDSLRREL YFGVKVA+IEPGFF+T M ++ N+Q W Q S E++++YG
Sbjct: 181 KYGIEAFSDSLRRELRYFGVKVAIIEPGFFLTGMASSARLCSNIQMLWDQTSSEIREIYG 240
Query: 922 DAFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPT 1101
+ ++A+++K + L + + +LS+VT+CMEHALT+CHPRTRYS GWDAK F+ P+SYLPT
Sbjct: 241 EKYLASYLKNLNELDQRCNKDLSVVTDCMEHALTACHPRTRYSAGWDAKLFFTPLSYLPT 300
Query: 1102 FLMDLMMCYGAP*P 1143
FL+D ++ + +P P
Sbjct: 301 FLVDALLYWTSPKP 314
>ref|NP_038814.1| 17-beta-hydroxysteroid dehydrogenase type 6 [Mus musculus].
Length = 317
Score = 388 bits (996), Expect = e-108
Identities = 190/306 (62%), Positives = 229/306 (74%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW RW RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RG+RVLAAC
Sbjct: 1 MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GA++LR +TSDRLETV+LDVTKTES+ AA +WVKERVGDRGLWGLVNNAG+ P A
Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
EW +D+M + VNL+G+ VT+ +L LV+K +GR+VNVSS +GRV+LFGG Y SK
Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVALFGGFYSCSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSD LR E+ FGVKV++IEPG F T MT AE+ + W+ A +K+ YG
Sbjct: 181 YGVEAFSDVLRHEVQDFGVKVSIIEPGSFKTEMTDAELTIERTKKVWEAAPEHIKESYGQ 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
F +F T + S NLSLVT+CMEHALTS HPRTRYS GWDAKFF++P+SYLP
Sbjct: 241 QFFDDFCSTTKRELMKCSRNLSLVTDCMEHALTSTHPRTRYSAGWDAKFFFIPLSYLPAS 300
Query: 1105 LMDLMM 1122
L+D ++
Sbjct: 301 LVDYLL 306
>ref|NP_081577.1| short-chain dehydrogenase/reductase family 9C member 7 [Mus
musculus].
Length = 313
Score = 331 bits (848), Expect = 8e-91
Identities = 156/298 (52%), Positives = 219/298 (73%)
Frame = +1
Query: 250 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
RW + +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAACLTE+GAQ+L + TS
Sbjct: 12 RWFKNCNLVKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSH 71
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
+L+T LLDVTK+E+V A +WV+++VG++GLW LVNNAG+ +P PNEWLT +DF+ +++
Sbjct: 72 QLQTFLLDVTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVIN 131
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
+NL+G++DVTL +LP+++K +GRVVN+SS GRV++FGGGYC+SK+GVEAFSDS+RREL
Sbjct: 132 INLVGLIDVTLNMLPMIKKARGRVVNMSSSGGRVAIFGGGYCVSKFGVEAFSDSIRRELH 191
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
+FGVKV++IEPG + T++ E ++ W + E +D YG+ + + K L
Sbjct: 192 FFGVKVSIIEPGNYKTSILGQEALESRMKKLWDRLPQETRDSYGEEYFQTYTKKLVNLMR 251
Query: 970 QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMMCYGAP*P 1143
+S VTN MEHA+ S PR RY+PG D KF YL ++ LPT + D ++ P P
Sbjct: 252 SAEPRISDVTNSMEHAIVSRSPRIRYNPGLDVKFLYLTLAKLPTPVTDFILSRYLPRP 309
>ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus].
Length = 318
Score = 309 bits (792), Expect = 2e-84
Identities = 149/296 (50%), Positives = 210/296 (70%), Gaps = 1/296 (0%)
Frame = +1
Query: 259 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 438
R+RQ + D ++FITGCDSGFG LLA QLD +G +VLA CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-ASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCLTPSGAEDLQQMASSRLH 77
Query: 439 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNL 618
T LLD+T ++V +WVK RVG+ GL+GLVNNAG+ + P WLT+ DF +L VN
Sbjct: 78 TTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGPTPWLTQDDFQRVLSVNT 137
Query: 619 LGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 798
LG + VTL LLPL+++ +GRVVN++SV+GR++ GGGYC+SK+G+EAFSDSLRR+++ FG
Sbjct: 138 LGPIGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKFGLEAFSDSLRRDMAPFG 197
Query: 799 VKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTY-DLLKPQW 975
V+V+++EPGFF T +T E L+A W + P ++ YG+AF+ +++ ++
Sbjct: 198 VQVSIVEPGFFRTPVTNLESLESTLKACWARLPPAIQAHYGEAFLDTYLRVQRRIMNLIC 257
Query: 976 SGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMMCYGAP*P 1143
L+ VT+C+EHALT+ HPRTRYSPGWDAK +LP SYLP ++D ++ + P P
Sbjct: 258 DPELTKVTSCLEHALTARHPRTRYSPGWDAKLLWLPASYLPARVVDAVLTWILPRP 313
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,483,910
Number of extensions: 1111348
Number of successful extensions: 4738
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 4655
Number of HSP's successfully gapped: 45
Length of query: 402
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 298
Effective length of database: 12,493,815
Effective search space: 3723156870
Effective search space used: 3723156870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012376
(1208 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens]. 450 e-126
Alignment gi|NP_003716.2| 17-beta-hydroxysteroid dehydrogenase type 6 pre... 397 e-110
Alignment gi|NP_683695.1| short-chain dehydrogenase/reductase family 9C m... 323 1e-88
Alignment gi|NP_001186700.1| 11-cis retinol dehydrogenase [Homo sapiens]. 309 3e-84
Alignment gi|NP_002896.2| 11-cis retinol dehydrogenase [Homo sapiens]. 309 3e-84
Alignment gi|NP_001135743.1| dehydrogenase/reductase SDR family member 9 ... 302 5e-82
Alignment gi|NP_954674.1| dehydrogenase/reductase SDR family member 9 pre... 302 5e-82
Alignment gi|NP_001135742.1| dehydrogenase/reductase SDR family member 9 ... 302 5e-82
Alignment gi|NP_005762.2| dehydrogenase/reductase SDR family member 9 pre... 302 5e-82
Alignment gi|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 171 1e-42
>ref|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens].
Length = 317
Score = 450 bits (1158), Expect = e-126
Identities = 221/313 (70%), Positives = 258/313 (82%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW W RERQV+SHLRDKYVFITGCDSGFG LLARQLD RGLRVLAAC
Sbjct: 1 MWLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GA+QLR QTSDRLETV LDVTKTESVAAA +WVKE V D+GLWGLVNNAGI +P A
Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTA 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
PNE LTKQDF+ +LDVNLLG++DVTL LLPLVR+ +GRVVNVSSVMGRVSLFGGGYC+SK
Sbjct: 121 PNELLTKQDFVTILDVNLLGVIDVTLSLLPLVRRARGRVVNVSSVMGRVSLFGGGYCISK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSDSLRRELSYFGVKVA+IEPG+F T +T+ E F + W ++SPEVK+ YG+
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAMIEPGYFKTAVTSKERFLKSFLEIWDRSSPEVKEAYGE 240
Query: 925 AFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTF 1104
FVA++ K+ + ++ + + +LSLVTNCMEHAL +CHPRTRYS GWDAK YLPMSY+PTF
Sbjct: 241 KFVADYKKSAEQMEQKCTQDLSLVTNCMEHALIACHPRTRYSAGWDAKLLYLPMSYMPTF 300
Query: 1105 LMDLMMCYGAP*P 1143
L+D +M + +P P
Sbjct: 301 LVDAIMYWVSPSP 313
>ref|NP_003716.2| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo sapiens].
Length = 317
Score = 397 bits (1019), Expect = e-110
Identities = 195/316 (61%), Positives = 238/316 (75%), Gaps = 3/316 (0%)
Frame = +1
Query: 205 MWXXXXXXXXXXXXXRWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAAC 384
MW W RERQVVSHL+DKYVFITGCDSGFGNLLARQLD RGLRVLAAC
Sbjct: 1 MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60
Query: 385 LTEQGAQQLRKQTSDRLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLA 564
LTE+GA+QLR QTSDRLETV LDVTK ES+AAA +WVKE VGDRGLWGLVNNAGI P+
Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120
Query: 565 PNEWLTKQDFMVMLDVNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSK 744
EWL +D M ML VNL+G++ VTL +LPLVR+ +GR+VNVSS++GRV+ F GGYC+SK
Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAFFVGGYCVSK 180
Query: 745 YGVEAFSDSLRRELSYFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGD 924
YGVEAFSD LRRE+ +FGVK++++EPG+F T MT ++ +W++A +K+ YG
Sbjct: 181 YGVEAFSDILRREIQHFGVKISIVEPGYFRTGMTNMTQSLERMKQSWKEAPKHIKETYGQ 240
Query: 925 AFVANFMKTYDLLKP---QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYL 1095
+ F Y+++K S NL+LVT+CMEHALTS HPRTRYS GWDAKFF++P+SYL
Sbjct: 241 QY---FDALYNIMKEGLLNCSTNLNLVTDCMEHALTSVHPRTRYSAGWDAKFFFIPLSYL 297
Query: 1096 PTFLMDLMMCYGAP*P 1143
PT L D ++ P P
Sbjct: 298 PTSLADYILTRSWPKP 313
>ref|NP_683695.1| short-chain dehydrogenase/reductase family 9C member 7 [Homo
sapiens].
Length = 313
Score = 323 bits (829), Expect = 1e-88
Identities = 153/298 (51%), Positives = 216/298 (72%)
Frame = +1
Query: 250 RWQRERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
RW + +V +L +KYVFITGCDSGFGNLLA+QL RG++VLAAC TE+G+Q+L++ TS
Sbjct: 12 RWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSY 71
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL+T LLDVTK+ES+ AA +WV+++VG++GLW LVNNAG+ +P PNEWLTK DF+ +++
Sbjct: 72 RLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVIN 131
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL+G+++VTL +LP+V++ +GRVVN+SS GRV++ GGGYC+SK+GVEAFSDS+RREL
Sbjct: 132 VNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAVIGGGYCVSKFGVEAFSDSIRRELY 191
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
YFGVKV +IEPG + T + E ++ W++ E +D YG+ + + +
Sbjct: 192 YFGVKVCIIEPGNYRTAILGKENLESRMRKLWERLPQETRDSYGEDYFRIYTDKLKNIMQ 251
Query: 970 QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMMCYGAP*P 1143
+ V N MEHA+ S PR RY+PG DAK Y+P++ LPT + D ++ P P
Sbjct: 252 VAEPRVRDVINSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKLPTPVTDFILSRYLPRP 309
>ref|NP_001186700.1| 11-cis retinol dehydrogenase [Homo sapiens].
Length = 318
Score = 309 bits (792), Expect = 3e-84
Identities = 150/301 (49%), Positives = 212/301 (70%), Gaps = 1/301 (0%)
Frame = +1
Query: 259 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 438
R+RQ + + +VFITGCDSGFG LLA QLD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 439 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNL 618
T LLD+T +SV A +WV+ V + GL+GLVNNAG+ + P WLT+ DF +L+VN
Sbjct: 78 TTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNT 137
Query: 619 LGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 798
+G + VTL LLPL+++ +GRV+N++SV+GR++ GGGYC+SK+G+EAFSDSLRR++++FG
Sbjct: 138 MGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFG 197
Query: 799 VKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYD-LLKPQW 975
++V+++EPGFF T +T E LQA W + P + YG AF+ ++K ++
Sbjct: 198 IRVSIVEPGFFRTPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLIC 257
Query: 976 SGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMMCYGAP*PC*VL 1155
+L+ V+ C+EHALT+ HPRTRYSPGWDAK +LP SYLP L+D ++ + P P +
Sbjct: 258 DPDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVLTWVLPKPAQAV 317
Query: 1156 Y 1158
Y
Sbjct: 318 Y 318
>ref|NP_002896.2| 11-cis retinol dehydrogenase [Homo sapiens].
Length = 318
Score = 309 bits (792), Expect = 3e-84
Identities = 150/301 (49%), Positives = 212/301 (70%), Gaps = 1/301 (0%)
Frame = +1
Query: 259 RERQVVSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSDRLE 438
R+RQ + + +VFITGCDSGFG LLA QLD RG RVLA+CLT GA+ L++ S RL
Sbjct: 19 RDRQSLP-ASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCLTPSGAEDLQRVASSRLH 77
Query: 439 TVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNL 618
T LLD+T +SV A +WV+ V + GL+GLVNNAG+ + P WLT+ DF +L+VN
Sbjct: 78 TTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNT 137
Query: 619 LGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFG 798
+G + VTL LLPL+++ +GRV+N++SV+GR++ GGGYC+SK+G+EAFSDSLRR++++FG
Sbjct: 138 MGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFG 197
Query: 799 VKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYD-LLKPQW 975
++V+++EPGFF T +T E LQA W + P + YG AF+ ++K ++
Sbjct: 198 IRVSIVEPGFFRTPVTNLESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLIC 257
Query: 976 SGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMMCYGAP*PC*VL 1155
+L+ V+ C+EHALT+ HPRTRYSPGWDAK +LP SYLP L+D ++ + P P +
Sbjct: 258 DPDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVLTWVLPKPAQAV 317
Query: 1156 Y 1158
Y
Sbjct: 318 Y 318
>ref|NP_001135743.1| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 302 bits (773), Expect = 5e-82
Identities = 144/291 (49%), Positives = 201/291 (69%), Gaps = 1/291 (0%)
Frame = +1
Query: 253 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAG+ LAP +WLT +D+ ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
FGV V+ IEPG F TN+ A W+Q SP++K YG+ ++ + K
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 970 QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMM 1122
+ +LS V CM+HALTS P+T Y+ G DAK F++P+S++P L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306
>ref|NP_954674.1| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 302 bits (773), Expect = 5e-82
Identities = 144/291 (49%), Positives = 201/291 (69%), Gaps = 1/291 (0%)
Frame = +1
Query: 253 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAG+ LAP +WLT +D+ ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
FGV V+ IEPG F TN+ A W+Q SP++K YG+ ++ + K
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 970 QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMM 1122
+ +LS V CM+HALTS P+T Y+ G DAK F++P+S++P L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306
>ref|NP_001135742.1| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 302 bits (773), Expect = 5e-82
Identities = 144/291 (49%), Positives = 201/291 (69%), Gaps = 1/291 (0%)
Frame = +1
Query: 253 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAG+ LAP +WLT +D+ ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
FGV V+ IEPG F TN+ A W+Q SP++K YG+ ++ + K
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 970 QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMM 1122
+ +LS V CM+HALTS P+T Y+ G DAK F++P+S++P L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306
>ref|NP_005762.2| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 302 bits (773), Expect = 5e-82
Identities = 144/291 (49%), Positives = 201/291 (69%), Gaps = 1/291 (0%)
Frame = +1
Query: 253 WQRERQV-VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQGAQQLRKQTSD 429
W R+ ++ + + DKY+FITGCDSGFGNL AR D +G V+AACLTE G+ L+ +TS+
Sbjct: 16 WTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSE 75
Query: 430 RLETVLLDVTKTESVAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLD 609
RL TVLLDVT E+V +WVK +VG++GLWGL+NNAG+ LAP +WLT +D+ ++
Sbjct: 76 RLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIE 135
Query: 610 VNLLGMVDVTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELS 789
VNL G++ VTL +LPLV+K +GRV+NVSSV GR+++ GGGY SKY VE F+DSLRR++
Sbjct: 136 VNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSKYAVEGFNDSLRRDMK 195
Query: 790 YFGVKVAVIEPGFFMTNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKP 969
FGV V+ IEPG F TN+ A W+Q SP++K YG+ ++ + K
Sbjct: 196 AFGVHVSCIEPGLFKTNLADPVKVIEKKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKS 255
Query: 970 QWSGNLSLVTNCMEHALTSCHPRTRYSPGWDAKFFYLPMSYLPTFLMDLMM 1122
+ +LS V CM+HALTS P+T Y+ G DAK F++P+S++P L D ++
Sbjct: 256 YVNMDLSPVVECMDHALTSLFPKTHYAAGKDAKIFWIPLSHMPAALQDFLL 306
>ref|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 171 bits (433), Expect = 1e-42
Identities = 104/263 (39%), Positives = 151/263 (57%), Gaps = 9/263 (3%)
Frame = +1
Query: 292 KYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLETVLLDVT 459
K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL TV L+V
Sbjct: 56 KAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQLNVC 115
Query: 460 KTESVAAAKEWVKERVGD--RGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNLLGMVD 633
+E V E V+ + D +G+WGLVNNAGI E+ + + + + +VNL G V
Sbjct: 116 SSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGIST-FGEVEFTSLETYKQVAEVNLWGTVR 174
Query: 634 VTLQLLPLVRKTKGRVVNVSSVMGRVSLFGGG-YCLSKYGVEAFSDSLRRELSYFGVKVA 810
+T LPL+R+ KGRVVN+SS++GR++ YC++K+GVEAFSD LR E+ GVKV+
Sbjct: 175 MTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVS 234
Query: 811 VIEPGFFM--TNMTAAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKPQWSGN 984
V+EPG F+ T++ + E + W++ V+ YG + + + S +
Sbjct: 235 VVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSSGSTD 294
Query: 985 LSLVTNCMEHALTSCHPRTRYSP 1053
S V + + HALT+ P TRY P
Sbjct: 295 TSPVIDAVTHALTATTPYTRYHP 317
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,903,949
Number of extensions: 1336708
Number of successful extensions: 5698
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 5607
Number of HSP's successfully gapped: 45
Length of query: 402
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 297
Effective length of database: 14,835,944
Effective search space: 4406275368
Effective search space used: 4406275368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012376
(1208 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 948 0.0
Sscrofa_Chr02 283 1e-73
>Sscrofa_Chr05
|| Length = 111506441
Score = 948 bits (478), Expect = 0.0
Identities = 507/514 (98%), Gaps = 2/514 (0%)
Strand = Plus / Plus
Query: 7 aatggtgta-cacgcatgtttgaccagaagcaagggtgctcagcaagaatgatgatcagg 65
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24089243 aatggtgtaacacgcatgtttgaccagaagcaagggtgctcagcaagaatgatgatcggg 24089302
Query: 66 aaagacttgaggactccctgccagagagcctgaggctgaccggccaaccaatagcctgtc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089303 aaagacttgaggactccctgccagagagcctgaggctgaccggccaaccaatagcctgtc 24089362
Query: 126 tgttcgtaagtcctcctgtttgagcagcagccaaa-tccagtctgaccccagcctgtctg 184
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 24089363 tgttcgtaagtcctcctgtttgggcagcagccaaactccagtctgaccccagcctgtctg 24089422
Query: 185 tttctgtcccctgcaaagccatgtgggtgtacctggcggtcctcgtgggcctgtactacc 244
||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 24089423 tttctgtcccccgcaaagccatgtggctgtacctggtggtcctcgtgggcctgtactacc 24089482
Query: 245 tcctgcgctggcagcgggagaggcaggtggtgagccacctgagggacaagtatgtcttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089483 tcctgcgctggcagcgggagaggcaggtggtgagccacctgagggacaagtatgtcttca 24089542
Query: 305 tcacgggctgtgactcgggcttcgggaacctgctggccaggcagctggacctgcggggct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089543 tcacgggctgtgactcgggcttcgggaacctgctggccaggcagctggacctgcggggct 24089602
Query: 365 tgagggtcctggctgcatgtctgacggagcagggggcccagcagctgaggaagcagacgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089603 tgagggtcctggctgcatgtctgacggagcagggggcccagcagctgaggaagcagacgt 24089662
Query: 425 cagacaggctggagacggtgctcctggacgtgaccaagacagagagcgtcgctgcggcca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24089663 cagacaggctggagacggtgctcctggacgtgaccaagacagagagcgtcgctgcggcca 24089722
Query: 485 aggagtgggtgaaggagcgtgtgggggacagagg 518
||||||||||||||||||||||||||||||||||
Sbjct: 24089723 aggagtgggtgaaggagcgtgtgggggacagagg 24089756
Score = 866 bits (437), Expect = 0.0
Identities = 465/473 (98%), Gaps = 1/473 (0%)
Strand = Plus / Plus
Query: 47 agcaagaatgatgatcaggaaagacttgaggactccctgccagagagcctgaggctgacc 106
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 24100584 agcaagaatgatgattgggaaagacctgaggactccctgccagagagcctgaggctgacc 24100643
Query: 107 ggccaaccaatagcctgtctgttcgtaagtcctcctgtttgagcagcagccaaa-tccag 165
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 24100644 ggccaaccaatagcctgtctgttcgtaagtcctcctgtttgggcagcagccaaactccag 24100703
Query: 166 tctgaccccagcctgtctgtttctgtcccctgcaaagccatgtgggtgtacctggcggtc 225
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 24100704 tcttaccccagcctgtctgtttctgtcccctgcaaagccatgtggctgtacctggtggtc 24100763
Query: 226 ctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacctg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100764 ctcgtgggcctgtactacctcctgcgctggcagcgggagaggcaggtggtgagccacctg 24100823
Query: 286 agggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccagg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100824 agggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccagg 24100883
Query: 346 cagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggcccag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100884 cagctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggcccag 24100943
Query: 406 cagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagaca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100944 cagctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagaca 24101003
Query: 466 gagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 518
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24101004 gagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 24101056
Score = 833 bits (420), Expect = 0.0
Identities = 449/456 (98%), Gaps = 2/456 (0%)
Strand = Plus / Minus
Query: 64 ggaaagacttgaggactccctgccagagagcctgaggctgaccggccaaccaatagcctg 123
|||||||| |||||||||| |||||| ||||||||||||||| |||||||||||||||||
Sbjct: 24139144 ggaaagacctgaggactccttgccag-gagcctgaggctgacgggccaaccaatagcctg 24139086
Query: 124 tctgttcgtaagtcctcctgtttgagcagcagccaaa-tccagtctgaccccagcctgtc 182
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 24139085 tctgttcgtaagtcctcctgtttgggcagcagccaaactccagtctgaccccagcctgtc 24139026
Query: 183 tgtttctgtcccctgcaaagccatgtgggtgtacctggcggtcctcgtgggcctgtacta 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24139025 tgtttctgtcccccgcaaagccatgtgggtgtacctggcggtcctcgtgggcctgtacta 24138966
Query: 243 cctcctgcgctggcagcgggagaggcaggtggtgagccacctgagggacaagtatgtctt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138965 cctcctgcgctggcagcgggagaggcaggtggtgagccacctgagggacaagtatgtctt 24138906
Query: 303 catcacgggctgtgactcgggcttcgggaacctgctggccaggcagctggacctgcgggg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138905 catcacgggctgtgactcgggcttcgggaacctgctggccaggcagctggacctgcgggg 24138846
Query: 363 cttgagggtcctggctgcatgtctgacggagcagggggcccagcagctgaggaagcagac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138845 cttgagggtcctggctgcatgtctgacggagcagggggcccagcagctgaggaagcagac 24138786
Query: 423 gtcagacaggctggagacggtgctcctggacgtgaccaagacagagagcgtcgctgcggc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24138785 gtcagacaggctggagacggtgctcctggacgtgaccaagacagagagcgtcgctgcggc 24138726
Query: 483 caaggagtgggtgaaggagcgtgtgggggacagagg 518
||||||||||||||||||||||||||||||||||||
Sbjct: 24138725 caaggagtgggtgaaggagcgtgtgggggacagagg 24138690
Score = 642 bits (324), Expect = 0.0
Identities = 356/364 (97%), Gaps = 2/364 (0%)
Strand = Plus / Plus
Query: 1 tgttggaatggtgta-cacgcatgtttgaccagaagcaagggtgctcagcaagaatgatg 59
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097444 tgttggaatggtgtaacacgcatgtttgaccagaagcaagggtgctcagcaagaatgatg 24097503
Query: 60 atcaggaaagacttgaggactccctgccagagagcctgaggctgaccggccaaccaatag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097504 atcaggaaagacttgaggactccctgccagagagcctgaggctgaccggccaaccaatag 24097563
Query: 120 cctgtctgttcgtaagtcctcctgtttgagcagcagccaaa-tccagtctgaccccagcc 178
|||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||
Sbjct: 24097564 cctgtctgttcgtaagtcctcctgtttgggcagcagccaaactccagtcttaccccagcc 24097623
Query: 179 tgtctgtttctgtcccctgcaaagccatgtgggtgtacctggcggtcctcgtgggcctgt 238
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 24097624 tgtctgtttctgtcccctgcaaagccatgtggctgtacctggtggtcctcgtgggcctgt 24097683
Query: 239 actacctcctgcgctggcagcgggagaggcaggtggtgagccacctgagggacaagtatg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097684 actacctcctgcgctggcagcgggagaggcaggtggtgagccacctgagggacaagtatg 24097743
Query: 299 tcttcatcacgggctgtgactcgggcttcgggaacctgctggccaggcagctggacctgc 358
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24097744 tcctcatcacgggctgtgactcggccttcgggaacctgctggccaggcagctggacctgc 24097803
Query: 359 gggg 362
||||
Sbjct: 24097804 gggg 24097807
Score = 577 bits (291), Expect = e-162
Identities = 303/307 (98%)
Strand = Plus / Minus
Query: 212 tgtacctggcggtcctcgtgggcctgtactacctcctgcgctggcagcgggagaggcagg 271
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131799 tgtacctggcagtcctcgtgggcctgtactacctcctgcgctggcagcgggagaggcagg 24131740
Query: 272 tggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgggcttcggga 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131739 tggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgggcttcggga 24131680
Query: 332 acctgctggccaggcagctggacctgcggggcttgagggtcctggctgcatgtctgacgg 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131679 acctgctggccaggcagctggacctgcggggcttgagggtcctggctgcatgtctgacgg 24131620
Query: 392 agcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcctgg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131619 agcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcctgg 24131560
Query: 452 acgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtggggg 511
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 24131559 acgtgaccaagacagagagcgtcgctgcagccaaggagtgggtgaaggagtatgtggggg 24131500
Query: 512 acagagg 518
|||||||
Sbjct: 24131499 acagagg 24131493
Score = 519 bits (262), Expect = e-144
Identities = 262/262 (100%)
Strand = Plus / Plus
Query: 516 aggactctggggcctggtgaacaatgctggcatttgcatgcccctggctcccaatgagtg 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24103183 aggactctggggcctggtgaacaatgctggcatttgcatgcccctggctcccaatgagtg 24103242
Query: 576 gctgaccaagcaggacttcatggtgatgctggatgtgaacctgttggggatggtcgacgt 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24103243 gctgaccaagcaggacttcatggtgatgctggatgtgaacctgttggggatggtcgacgt 24103302
Query: 636 gaccctgcagctgctgcccctcgtgaggaagaccaagggccgtgtggtcaacgtctccag 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24103303 gaccctgcagctgctgcccctcgtgaggaagaccaagggccgtgtggtcaacgtctccag 24103362
Query: 696 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggcgttga 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24103363 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggcgttga 24103422
Query: 756 ggccttctcagactccctcagg 777
||||||||||||||||||||||
Sbjct: 24103423 ggccttctcagactccctcagg 24103444
Score = 496 bits (250), Expect = e-137
Identities = 259/262 (98%)
Strand = Plus / Plus
Query: 516 aggactctggggcctggtgaacaatgctggcatttgcatgcccctggctcccaatgagtg 575
|||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct: 24091895 aggactctggggcctggtgaacaacgctggcatttgcacgcccctggctcccagtgagtg 24091954
Query: 576 gctgaccaagcaggacttcatggtgatgctggatgtgaacctgttggggatggtcgacgt 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24091955 gctgaccaagcaggacttcatggtgatgctggatgtgaacctgttggggatggtcgacgt 24092014
Query: 636 gaccctgcagctgctgcccctcgtgaggaagaccaagggccgtgtggtcaacgtctccag 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24092015 gaccctgcagctgctgcccctcgtgaggaagaccaagggccgtgtggtcaacgtctccag 24092074
Query: 696 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggcgttga 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24092075 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggcgttga 24092134
Query: 756 ggccttctcagactccctcagg 777
||||||||||||||||||||||
Sbjct: 24092135 ggccttctcagactccctcagg 24092156
Score = 452 bits (228), Expect = e-124
Identities = 294/316 (93%)
Strand = Plus / Minus
Query: 203 ccatgtgggtgtacctggcggtcctcgtgggcctgtactacctcctgcgctggcagcggg 262
|||||||| |||||||||| |||||||||||||||||||||||||| |||||| | ||||
Sbjct: 23785636 ccatgtggctgtacctggctgtcctcgtgggcctgtactacctccttcgctggtaccggg 23785577
Query: 263 agaggcaggtggtgagccacctgagggacaagtatgtcttcatcacgggctgtgactcgg 322
| |||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 23785576 aaaggcagatggttagccaccttggggataagtatgtcttcatcacgggctgtgactcgg 23785517
Query: 323 gcttcgggaacctgctggccaggcagctggacctgcggggcttgagggtcctggctgcat 382
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 23785516 gcttcgggaacctgctggccaggcagctggatgtgaggggcttgagggtcctggctgcat 23785457
Query: 383 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23785456 gtctgacggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacgg 23785397
Query: 443 tgctcctggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagc 502
||||| ||||||||||||||||||||||| | ||||| |||| |||||||||||||||
Sbjct: 23785396 tgctcttggacgtgaccaagacagagagcattgctgcagccacccagtgggtgaaggagc 23785337
Query: 503 gtgtgggggacagagg 518
|||| |||||||||||
Sbjct: 23785336 gtgtcggggacagagg 23785321
Score = 452 bits (228), Expect = e-124
Identities = 262/270 (97%), Gaps = 3/270 (1%)
Strand = Plus / Plus
Query: 941 tcatgaagacatatgacctattgaagccccaatggtctgggaatctgtctttggtgacca 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24093851 tcatgaagacatatgacctattgaagccccaatggtctgggaatctgtctttggtgacca 24093910
Query: 1001 actgcatggagcacgccctgacctcctgccacccccgcacgcgatactcacctggctggg 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24093911 actgcatggagcacgccctgacctcctgccacccccgcacgcgatactcacctggctggg 24093970
Query: 1061 acgccaagttcttctacctccccatgagctacttgcccaccttcctcatggatctcatga 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24093971 acgccaagttcttctacctccccatgagctacttgcccaccttcctcatggatctcatga 24094030
Query: 1121 tgtgctatggtgccccctagccctgct-aggtcctgtaccccannactga-gtgcatggc 1178
|||| ||||||| ||||||| |||||| |||||||||| |||| ||||| |||||||||
Sbjct: 24094031 tgtgttatggtg-cccctaggcctgctaaggtcctgtaacccaagactgaggtgcatggc 24094089
Query: 1179 agggggagctggggaccgtgtgaggcgggg 1208
||||||||||||||||||||||||||||||
Sbjct: 24094090 agggggagctggggaccgtgtgaggcgggg 24094119
Score = 444 bits (224), Expect = e-122
Identities = 261/270 (96%), Gaps = 3/270 (1%)
Strand = Plus / Plus
Query: 941 tcatgaagacatatgacctattgaagccccaatggtctgggaatctgtctttggtgacca 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24105136 tcatgaagacatatgacctattgaagccccaatggtctgggaatctgtctttggtgacca 24105195
Query: 1001 actgcatggagcacgccctgacctcctgccacccccgcacgcgatactcacctggctggg 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24105196 actgcatggagcacgccctgacctcctgccacccccgcacgcgatactcacctggctggg 24105255
Query: 1061 acgccaagttcttctacctccccatgagctacttgcccaccttcctcatggatctcatga 1120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24105256 acgccaagttcttctacctccccatgagctacttgcccaccttcctcgtggatctcatga 24105315
Query: 1121 tgtgctatggtgccccctagccctgct-aggtcctgtaccccannactga-gtgcatggc 1178
||| |||||||| ||||||| |||||| |||||||||| |||| ||||| |||||||||
Sbjct: 24105316 tgtactatggtg-cccctaggcctgctaaggtcctgtaacccaagactgaggtgcatggc 24105374
Query: 1179 agggggagctggggaccgtgtgaggcgggg 1208
||||||||||||||||||||||||||||||
Sbjct: 24105375 agggggagctggggaccgtgtgaggcgggg 24105404
Score = 385 bits (194), Expect = e-104
Identities = 245/262 (93%)
Strand = Plus / Minus
Query: 516 aggactctggggcctggtgaacaatgctggcatttgcatgcccctggctcccaatgagtg 575
||||||||||||||||||||||||||||||||| | | | | ||||||||||||||
Sbjct: 24136267 aggactctggggcctggtgaacaatgctggcatctccgtaatctctgctcccaatgagtg 24136208
Query: 576 gctgaccaagcaggacttcatggtgatgctggatgtgaacctgttggggatggtcgacgt 635
||||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct: 24136207 gctgaccaaacaggacttcgtgaagatattggatgtgaacctgttggggatggtcgacgt 24136148
Query: 636 gaccctgcagctgctgcccctcgtgaggaagaccaagggccgtgtggtcaacgtctccag 695
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 24136147 gaccctgcagctgctgcccctcgtgaggaagaccaggggccgtgtggtcaacgtctccag 24136088
Query: 696 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggcgttga 755
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 24136087 tgtcatgggccgggtgtccctctttggcggcggctactgcctgtccaagtacggtgttga 24136028
Query: 756 ggccttctcagactccctcagg 777
||||||||||||||||||||||
Sbjct: 24136027 ggccttctcagactccctcagg 24136006
Score = 323 bits (163), Expect = 1e-85
Identities = 214/231 (92%)
Strand = Plus / Minus
Query: 288 ggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccaggca 347
|||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 23894206 ggacaaatatgtcttcatcacgggctgtgacttaggctttgggaatctgctggccaggca 23894147
Query: 348 gctggacctgcggggcttgagggtcctggctgcatgtctgacggagcagggggcccagca 407
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 23894146 gctggacctgcggggcttgaaggtcctggctgcatgtctgacagagcagggggcccagca 23894087
Query: 408 gctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagacaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23894086 gctgaggaagcagacgtcagacaggctggagacggtgctcctggacgtgaccaagacaga 23894027
Query: 468 gagcgtcgctgcggccaaggagtgggtgaaggagcgtgtgggggacagagg 518
|||||| | ||| |||| |||||| ||||||| |||||| ||||||||
Sbjct: 23894026 gagcgttgttgcagccactcagtgggaaaaggagcatgtgggagacagagg 23893976
Score = 323 bits (163), Expect = 1e-85
Identities = 166/167 (99%)
Strand = Plus / Plus
Query: 774 caggagggagctctcctactttggggtgaaggtggctgtgatcgagcctggcttcttcat 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24093119 caggagggagctctcctactttggggtgaaggtggctgtgatcgagcctggcttcttcat 24093178
Query: 834 gaccaatatgactgccgctgaggtgtttaatggaaacctccaggcagcatggcagcaggc 893
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24093179 gaccaatatgaccgccgctgaggtgtttaatggaaacctccaggcagcatggcagcaggc 24093238
Query: 894 cagcccagaggtcaaggatctctatggagacgcattcgtggctaact 940
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24093239 cagcccagaggtcaaggatctctatggagacgcattcgtggctaact 24093285
Score = 307 bits (155), Expect = 8e-81
Identities = 164/167 (98%)
Strand = Plus / Plus
Query: 774 caggagggagctctcctactttggggtgaaggtggctgtgatcgagcctggcttcttcat 833
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24104407 caggagggagctctcctactttggggtgaaggtggctatgatcgagcctggcttcttcat 24104466
Query: 834 gaccaatatgactgccgctgaggtgtttaatggaaacctccaggcagcatggcagcaggc 893
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24104467 gaccaatatgaccgccgctgaggtgtttcatggaaacctccaggcagcatggcagcaggc 24104526
Query: 894 cagcccagaggtcaaggatctctatggagacgcattcgtggctaact 940
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24104527 cagcccagaggtcaaggatctctatggagacgcattcgtggctaact 24104573
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 390 ggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcct 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097806 ggagcagggggcccagcagctgaggaagcagacgtcagacaggctggagacggtgctcct 24097865
Query: 450 ggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtggg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24097866 ggacgtgaccaagacagagagcgtcgctgcggccaaggagtgggtgaaggagcgtgtggg 24097925
Query: 510 ggacagagg 518
|||||||||
Sbjct: 24097926 ggacagagg 24097934
Score = 242 bits (122), Expect = 4e-61
Identities = 140/146 (95%)
Strand = Plus / Minus
Query: 991 ttggtgaccaactgcatggagcacgccctgacctcctgccacccccgcacgcgatactca 1050
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24133830 ttggtgactgactgcatggagcacgccctgacctcctgccacccccgcacgcgatactca 24133771
Query: 1051 cctggctgggacgccaagttcttctacctccccatgagctacttgcccaccttcctcatg 1110
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24133770 cctggctgggacgccaagctcttctacctccccatgagctacttgcccaccttcctcgtg 24133711
Query: 1111 gatctcatgatgtgctatggtgcccc 1136
||||||||||| | ||||||||||||
Sbjct: 24133710 gatctcatgatatactatggtgcccc 24133685
Score = 97.6 bits (49), Expect = 1e-17
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 288 ggacaagtatgtcttcatcacgggctgtgactcgggcttcgggaacctgctggccaggca 347
||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 24125271 ggacaagtatgtctttatcacgggctgtgactcgggctttggaaacctcctggccaggca 24125212
Query: 348 gctgg 352
|||||
Sbjct: 24125211 gctgg 24125207
Score = 93.7 bits (47), Expect = 2e-16
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 774 caggagggagctctcctactttggggtgaaggtggctgtgatcgagcctggcttcttcat 833
||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||
Sbjct: 24134577 caggagggagctctcctactttggggtgaaggtggctatgattgagcccggtttcttcaa 24134518
Query: 834 gaccaat 840
|||||||
Sbjct: 24134517 gaccaat 24134511
Score = 67.9 bits (34), Expect = 1e-08
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 878 cagcatggcagcaggccagcccagaggtcaaggatctctatggagacgcattcgtggc 935
|||||||| | ||||||||||||||| |||||||||||||||| ||| ||||| ||||
Sbjct: 24134473 cagcatggaatcaggccagcccagagatcaaggatctctatggggacacattcctggc 24134416
>Sscrofa_Chr02
|| Length = 162569375
Score = 283 bits (143), Expect = 1e-73
Identities = 296/347 (85%)
Strand = Plus / Plus
Query: 776 ggagggagctctcctactttggggtgaaggtggctgtgatcgagcctggcttcttcatga 835
||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 59223142 ggagggagctctcctacttcggggtgaaggtggctatgagtgagcctggtttcttcatga 59223201
Query: 836 ccaatatgactgccgctgaggtgtttaatggaaacctccaggcagcatggcagcaggcca 895
|||||||||| | || ||||||| ||||||||||| ||||||||||| | |||||||
Sbjct: 59223202 ccaatatgaccagccctagggtgtttgatggaaacctctaggcagcatggaaacaggcca 59223261
Query: 896 gcccagaggtcaaggatctctatggagacgcattcgtggctaacttcatgaagacatatg 955
||||||||||||||||||||||||||| | |||| ||| |||||||||||||||| ||
Sbjct: 59223262 gcccagaggtcaaggatctctatggagtcacattggtgactaacttcatgaagacgcctg 59223321
Query: 956 acctattgaagccccaatggtctgggaatctgtctttggtgaccaactgcatggagcacg 1015
| || | |||||| |||||||| |||||| ||||||||||||| || ||||| |||||
Sbjct: 59223322 atctgctaaagccctgatggtctgagaatctatctttggtgaccaccttcatggggcacg 59223381
Query: 1016 ccctgacctcctgccacccccgcacgcgatactcacctggctgggacgccaagttcttct 1075
||| || ||||||||||| | || ||||||||||||||||||| ||| | ||||||
Sbjct: 59223382 ccccgattgcctgccacccctgtacctgatactcacctggctgggatgccgggctcttct 59223441
Query: 1076 acctccccatgagctacttgcccaccttcctcatggatctcatgatg 1122
|||||||||||| ||| ||| ||||||||| ||||||||||||||
Sbjct: 59223442 acctccccatgaactatctgctcaccttcctggtggatctcatgatg 59223488
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,918,523
Number of extensions: 233
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 21
Length of query: 1208
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1187
Effective length of database: 2,808,413,156
Effective search space: 3333586416172
Effective search space used: 3333586416172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)