Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012378
(665 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069049.1| 60S ribosomal protein L11 [Bos taurus]. 362 e-100
>ref|NP_001069049.1| 60S ribosomal protein L11 [Bos taurus].
Length = 178
Score = 362 bits (930), Expect = e-100
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
Sbjct: 61 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 120
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
Sbjct: 121 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 178
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,570,287
Number of extensions: 701188
Number of successful extensions: 1809
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1807
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 123
Effective length of database: 14,438,750
Effective search space: 1775966250
Effective search space used: 1775966250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012378
(665 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532314.2| PREDICTED: similar to 60S ribosomal protein L11... 286 9e-78
Alignment gi|XP_535361.2| PREDICTED: similar to Transcription elongation ... 270 1e-72
Alignment gi|XP_854929.1| PREDICTED: similar to 60S ribosomal protein L11... 132 4e-31
>ref|XP_532314.2| PREDICTED: similar to 60S ribosomal protein L11 [Canis familiaris].
Length = 502
Score = 286 bits (733), Expect = 9e-78
Identities = 145/171 (84%), Positives = 151/171 (88%)
Frame = +1
Query: 46 KENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEK 225
K ++ R+R L + E G LTRAAKVLEQL GQTPVFSK RY VRSFGIRRNEK
Sbjct: 333 KSQSLKMPRLRFLSCSPTTME-GHTLTRAAKVLEQLMGQTPVFSKTRYMVRSFGIRRNEK 391
Query: 226 IAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYG 405
IAVHCTVRGAKAEEIL+KGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYG
Sbjct: 392 IAVHCTVRGAKAEEILKKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYG 451
Query: 406 LDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
LDFYVVLGRPGFSIADK RRTGC+GAKHRISKEEAMRWFQQKYDGIILP K
Sbjct: 452 LDFYVVLGRPGFSIADKTRRTGCVGAKHRISKEEAMRWFQQKYDGIILPSK 502
>ref|XP_535361.2| PREDICTED: similar to Transcription elongation factor B polypeptide
3 (RNA polymerase II transcription factor SIII subunit
A1) (SIII p110) (Elongin A) (EloA) (Elongin 110 kDa
subunit) [Canis familiaris].
Length = 848
Score = 270 bits (689), Expect = 1e-72
Identities = 133/134 (99%), Positives = 134/134 (100%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
Sbjct: 61 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 120
Query: 385 PSIGIYGLDFYVVL 426
PSIGIYGLDFYV+L
Sbjct: 121 PSIGIYGLDFYVLL 134
>ref|XP_854929.1| PREDICTED: similar to 60S ribosomal protein L11 [Canis familiaris].
Length = 88
Score = 132 bits (331), Expect = 4e-31
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 1/90 (1%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQ-LTGQTPVFSKARYTVRS 201
M QD GEKENPM+EL I +LCLNICV E + LT+AAKVLEQ LTGQTPVFSKARYTVRS
Sbjct: 1 MEQDPGEKENPMQELCIHQLCLNICVQEFRESLTQAAKVLEQQLTGQTPVFSKARYTVRS 60
Query: 202 FGIRRNEKIAVHCTVRGAKAEEILEKGLKV 291
FGI+RNEKIA+HC V GAKAEEIL GLK+
Sbjct: 61 FGIKRNEKIAIHCIVHGAKAEEIL--GLKI 88
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,328,612
Number of extensions: 667123
Number of successful extensions: 1978
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1975
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 122
Effective length of database: 15,574,240
Effective search space: 1900057280
Effective search space used: 1900057280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012378
(665 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001638.1| 60S ribosomal protein L11 [Sus scrofa]. 358 1e-99
>ref|NP_001001638.1| 60S ribosomal protein L11 [Sus scrofa].
Length = 178
Score = 358 bits (920), Expect = 1e-99
Identities = 176/177 (99%), Positives = 177/177 (100%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
Sbjct: 61 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 120
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPG 555
PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQK+DGIILPG
Sbjct: 121 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIILPG 177
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,265,857
Number of extensions: 519311
Number of successful extensions: 1105
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 126
Effective length of database: 8,978,717
Effective search space: 1131318342
Effective search space used: 1131318342
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012378
(665 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080195.1| 60S ribosomal protein L11 [Mus musculus]. 362 e-100
Alignment gi|XP_001475458.1| PREDICTED: 60S ribosomal protein L11 [Mus mu... 361 e-100
Alignment gi|XP_003086387.1| PREDICTED: 60S ribosomal protein L11 [Mus mu... 361 e-100
Alignment gi|XP_001475139.1| PREDICTED: 60S ribosomal protein L11-like [M... 357 6e-99
Alignment gi|XP_003086135.1| PREDICTED: 60S ribosomal protein L11-like [M... 357 6e-99
Alignment gi|XP_981252.1| PREDICTED: 60S ribosomal protein L11-like [Mus ... 344 3e-95
Alignment gi|XP_286185.2| PREDICTED: 60S ribosomal protein L11-like [Mus ... 341 2e-94
Alignment gi|XP_916793.1| PREDICTED: 60S ribosomal protein L11-like [Mus ... 341 2e-94
Alignment gi|XP_003086778.1| PREDICTED: 60S ribosomal protein L11-like [M... 338 2e-93
Alignment gi|XP_001477187.2| PREDICTED: 60S ribosomal protein L11-like [M... 256 8e-69
>ref|NP_080195.1| 60S ribosomal protein L11 [Mus musculus].
Length = 178
Score = 362 bits (930), Expect = e-100
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
Sbjct: 61 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 120
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
Sbjct: 121 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 178
>ref|XP_001475458.1| PREDICTED: 60S ribosomal protein L11 [Mus musculus].
Length = 178
Score = 361 bits (927), Expect = e-100
Identities = 177/178 (99%), Positives = 178/178 (100%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENPMRELRIRKLCLNICVGE+GDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPMRELRIRKLCLNICVGENGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
Sbjct: 61 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 120
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
Sbjct: 121 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 178
>ref|XP_003086387.1| PREDICTED: 60S ribosomal protein L11 [Mus musculus].
Length = 178
Score = 361 bits (927), Expect = e-100
Identities = 177/178 (99%), Positives = 178/178 (100%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENPMRELRIRKLCLNICVGE+GDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPMRELRIRKLCLNICVGENGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
Sbjct: 61 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 120
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
Sbjct: 121 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 178
>ref|XP_001475139.1| PREDICTED: 60S ribosomal protein L11-like [Mus musculus].
Length = 178
Score = 357 bits (915), Expect = 6e-99
Identities = 176/178 (98%), Positives = 176/178 (98%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GI RNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHID GIKYD
Sbjct: 61 GIWRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDPGIKYD 120
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
Sbjct: 121 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 178
>ref|XP_003086135.1| PREDICTED: 60S ribosomal protein L11-like [Mus musculus].
Length = 178
Score = 357 bits (915), Expect = 6e-99
Identities = 176/178 (98%), Positives = 176/178 (98%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GI RNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHID GIKYD
Sbjct: 61 GIWRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDPGIKYD 120
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
Sbjct: 121 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 178
>ref|XP_981252.1| PREDICTED: 60S ribosomal protein L11-like [Mus musculus].
Length = 178
Score = 344 bits (883), Expect = 3e-95
Identities = 171/178 (96%), Positives = 173/178 (97%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKEN MREL IRKLCLNIC+GES DRLTRAAKVLEQLTGQT VFSKARYTVRSF
Sbjct: 1 MAQDQGEKENLMRELCIRKLCLNICIGESRDRLTRAAKVLEQLTGQTLVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVRE ELRKNNFSDTGNFGFGIQEHIDLGIKYD
Sbjct: 61 GIRRNEKIAVHCTVRGAKAEEILEKGLKVRECELRKNNFSDTGNFGFGIQEHIDLGIKYD 120
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
PSIGIYGLDFYVVLGRPGFSIADKKRRTGC+GAKHRISKEEAMRWFQQKYDGIILPGK
Sbjct: 121 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCVGAKHRISKEEAMRWFQQKYDGIILPGK 178
>ref|XP_286185.2| PREDICTED: 60S ribosomal protein L11-like [Mus musculus].
Length = 198
Score = 341 bits (875), Expect = 2e-94
Identities = 174/195 (89%), Positives = 177/195 (90%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENP+RE RIRKLCLNIC GDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPLREPRIRKLCLNIC----GDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 56
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYEL KNNFSDTGNFGFG+QEHIDLGIKYD
Sbjct: 57 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELWKNNFSDTGNFGFGLQEHIDLGIKYD 116
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK*I 564
PSIGIYGLDFY VLGRPGFSIADKKRRTGCIGAKHRISKEEA RWFQQKYDGIILPGK
Sbjct: 117 PSIGIYGLDFYEVLGRPGFSIADKKRRTGCIGAKHRISKEEATRWFQQKYDGIILPGK-- 174
Query: 565 PVSIQKANKKFSLKC 609
+ K KFS KC
Sbjct: 175 -STFSKKPIKFSQKC 188
>ref|XP_916793.1| PREDICTED: 60S ribosomal protein L11-like [Mus musculus].
Length = 198
Score = 341 bits (875), Expect = 2e-94
Identities = 174/195 (89%), Positives = 177/195 (90%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENP+RE RIRKLCLNIC GDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPLREPRIRKLCLNIC----GDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 56
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYEL KNNFSDTGNFGFG+QEHIDLGIKYD
Sbjct: 57 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELWKNNFSDTGNFGFGLQEHIDLGIKYD 116
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK*I 564
PSIGIYGLDFY VLGRPGFSIADKKRRTGCIGAKHRISKEEA RWFQQKYDGIILPGK
Sbjct: 117 PSIGIYGLDFYEVLGRPGFSIADKKRRTGCIGAKHRISKEEATRWFQQKYDGIILPGK-- 174
Query: 565 PVSIQKANKKFSLKC 609
+ K KFS KC
Sbjct: 175 -STFSKKPIKFSQKC 188
>ref|XP_003086778.1| PREDICTED: 60S ribosomal protein L11-like [Mus musculus].
Length = 178
Score = 338 bits (868), Expect = 2e-93
Identities = 168/178 (94%), Positives = 170/178 (95%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
M QDQGEKEN MRELRIRKLCLNIC+GES DRLTRAAKVLEQLTGQT VFSKARYTVRSF
Sbjct: 1 MVQDQGEKENLMRELRIRKLCLNICIGESRDRLTRAAKVLEQLTGQTLVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVRE ELRKN FSDTGNFGFGIQEHIDLGIKYD
Sbjct: 61 GIRRNEKIAVHCTVRGAKAEEILEKGLKVRECELRKNIFSDTGNFGFGIQEHIDLGIKYD 120
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
PS GIYGLDFYVVLGRPGFSIADKK RTGC+GAKHRISKEEAMRWFQQKYDGIILPGK
Sbjct: 121 PSTGIYGLDFYVVLGRPGFSIADKKHRTGCVGAKHRISKEEAMRWFQQKYDGIILPGK 178
>ref|XP_001477187.2| PREDICTED: 60S ribosomal protein L11-like [Mus musculus].
Length = 221
Score = 256 bits (655), Expect = 8e-69
Identities = 129/138 (93%), Positives = 131/138 (94%)
Frame = +1
Query: 175 SKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQ 354
++ARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQ
Sbjct: 67 TRARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQ 126
Query: 355 EHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKY 534
EHIDLGIKYDPSIGIYGLDFYVVLGR GFSIADKKRRTGCIGAKHRISKEEAMRWFQQKY
Sbjct: 127 EHIDLGIKYDPSIGIYGLDFYVVLGRSGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKY 186
Query: 535 DGIILPGK*IPVSIQKAN 588
GIILPGK IQKAN
Sbjct: 187 AGIILPGK--INLIQKAN 202
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,168,189
Number of extensions: 554338
Number of successful extensions: 1640
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1638
Number of HSP's successfully gapped: 11
Length of query: 221
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 124
Effective length of database: 12,704,067
Effective search space: 1575304308
Effective search space used: 1575304308
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012378
(665 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000966.2| 60S ribosomal protein L11 isoform 1 [Homo sapie... 362 e-100
Alignment gi|NP_001186731.1| 60S ribosomal protein L11 isoform 2 [Homo sa... 357 5e-99
>ref|NP_000966.2| 60S ribosomal protein L11 isoform 1 [Homo sapiens].
Length = 178
Score = 362 bits (930), Expect = e-100
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +1
Query: 25 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 204
MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
Sbjct: 1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF 60
Query: 205 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 384
GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
Sbjct: 61 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD 120
Query: 385 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
Sbjct: 121 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 178
>ref|NP_001186731.1| 60S ribosomal protein L11 isoform 2 [Homo sapiens].
Length = 177
Score = 357 bits (916), Expect = 5e-99
Identities = 175/175 (100%), Positives = 175/175 (100%)
Frame = +1
Query: 34 DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIR 213
DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIR
Sbjct: 3 DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIR 62
Query: 214 RNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSI 393
RNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSI
Sbjct: 63 RNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSI 122
Query: 394 GIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 558
GIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
Sbjct: 123 GIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK 177
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,881,713
Number of extensions: 653734
Number of successful extensions: 1872
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1872
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 122
Effective length of database: 15,033,728
Effective search space: 1834114816
Effective search space used: 1834114816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012378
(665 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 793 0.0
Sscrofa_Chr05 541 e-151
Sscrofa_Chr13 505 e-141
Sscrofa_Chr06 293 6e-77
>Sscrofa_Chr09
|| Length = 153670197
Score = 793 bits (400), Expect = 0.0
Identities = 554/604 (91%), Gaps = 1/604 (0%)
Strand = Plus / Minus
Query: 6 gctcttcctgtttcccatcatggcgcaggatcaaggtgaaaaagaaaaccccatgcggga 65
||||||||||||||||||||||| ||||||||||| |||||| | ||||||||| ||||
Sbjct: 139305139 gctcttcctgtttcccatcatggtgcaggatcaagatgaaaagaagaaccccatgtggga 139305080
Query: 66 acttcgcatccgcaagctctgcctcaacatctgcgttggggagagtggagacagactgac 125
|||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 139305079 acttggcatccacaagctctgcctcaacatctgcgagggggagagtggaaacagactgac 139305020
Query: 126 ccgggcagccaaggtgctggagcagctcacaggccagactcctgtgttttccaaagctag 185
|||||||||| |||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct: 139305019 ccgggcagccgaggtgctgaagcagctcacaggccagagccctgtgttctccaaagctag 139304960
Query: 186 atacaccgtcagatcctttggcatcaggagaaatgaaaagattgccgtccactgcacagt 245
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139304959 atacactgtcagatcctttggcatcaggagaaatgaaaagattgccgtccactgcacagt 139304900
Query: 246 ccgtggggccaaggcagaagaaatacttgagaaaggtctaaaggtgcgagagtacgagtt 305
||||||||||||||||||||||||| |||||| | ||| | ||||||||||||| ||||
Sbjct: 139304899 ccgtggggccaaggcagaagaaatatttgagagacatctgagggtgcgagagtacaagtt 139304840
Query: 306 aagaaaaaataacttctcggatactggaaactttggttttgggatccaagaacacatcga 365
||||||||||||||||| | ||||||||||||||| || |||||||||| |||
Sbjct: 139304839 aagaaaaaataacttct-taactttggaaactttggtttgagggtccaagaacatatcag 139304781
Query: 366 tctggggatcaaatatgacccaagcattggtatctacggcctggacttctacgtggtgct 425
|||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 139304780 tctggggaccaaatatgatccaagcattggtatctacagcctggacttctacgtggtgct 139304721
Query: 426 gggtaggccaggtttcagcatcgcagacaagaagcgcaggacaggctgcattggggccaa 485
||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 139304720 gggtaggcccggtttcagcttcgcagacaagaagcacaggacaggctgcattggggccaa 139304661
Query: 486 acacagaatcagcaaagaggaggccatgcgctggttccagcagaagtatgatgggatcat 545
|||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct: 139304660 acacggaatcagcaaagaggatgccatgagctggttccagcagaagtatgatgagatcat 139304601
Query: 546 ccttcctggcaaataaattcccgtttctattcaaaaggctaataaaaagttttcattgaa 605
||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||
Sbjct: 139304600 ccttcctggcaaataaattcctgtttttatccaaaaggctaataaaaagttttcactgaa 139304541
Query: 606 atgt 609
||||
Sbjct: 139304540 atgt 139304537
Score = 533 bits (269), Expect = e-149
Identities = 465/527 (88%), Gaps = 5/527 (0%)
Strand = Plus / Minus
Query: 7 ctcttcctgtttcccatcatggcgcaggatcaaggtgaaaaagaaaaccccatgcgggaa 66
||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||
Sbjct: 1922125 ctcttcctgtttcccatcatggcgcaggatcaaggtgaaaaggagaaccccacgagggaa 1922066
Query: 67 cttcgcatccgcaagctctgcctcaacatctgcgttggggagagtggagacagactgacc 126
| || ||||| || ||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 1922065 cctcacatccacaggctctgcctcaacatctctgagggggagagtggagacagactcacc 1922006
Query: 127 cgggcagccaaggtgctggagcagctcacaggccagactcctgtgttttccaaagctaga 186
||||||||| ||||||||||||||||||||||||||| |||| ||| | |||||| | |
Sbjct: 1922005 tgggcagcca-ggtgctggagcagctcacaggccagacccctgcgttctgcaaagccaaa 1921947
Query: 187 tacaccgtcagatcctttggcatcaggagaaatgaaaagattgccgtccactgcacagtc 246
|||||| |||||||| |||||| ||||||||| |||||| ||||||||| ||||||||||
Sbjct: 1921946 tacaccatcagatcccttggcaccaggagaaaggaaaaggttgccgtccgctgcacagtc 1921887
Query: 247 cgtggggccaaggcagaagaaatacttgagaaaggtctaaaggtgcgagagtacgagtta 306
|||||| || ||| |||||||||||||||||||||||| |||||| |||| |||||||
Sbjct: 1921886 cgtgggaccgagggagaagaaatacttgagaaaggtctgcaggtgcaagagcgcgagtta 1921827
Query: 307 agaaaaaataacttctcggatactggaaactttggttttgggatccaagaacacatcgat 366
||| ||||||||||| | || ||||||||||||||||| |||||||||||||||||| ||
Sbjct: 1921826 aga-aaaataacttcccagacactggaaactttggtttggggatccaagaacacatcaat 1921768
Query: 367 ctggggatcaaatatgacccaagcattggtatctacggcctggacttctacgtggtgctg 426
||||| ||||||| | ||||||| | |||||||| |||| ||||||||| ||||||||
Sbjct: 1921767 ctgggaatcaaatgtcacccaagtaccagtatctacagcctagacttctacatggtgctg 1921708
Query: 427 ggtaggccaggtttcagcatcgcagacaagaagcgcaggacaggctgcattggggccaaa 486
||||||||||||||||||||||||||||| || | |||||||||||||| |||| ||
Sbjct: 1921707 ggtaggccaggtttcagcatcgcagacaaaaatcccaggacaggctgcactgggccc--- 1921651
Query: 487 cacagaatcagcaaagaggaggccatgcgctggttccagcagaagta 533
|||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct: 1921650 cacagagtcagcaaagaggaggccatgtgctggttccagcacaagta 1921604
Score = 533 bits (269), Expect = e-149
Identities = 465/527 (88%), Gaps = 5/527 (0%)
Strand = Plus / Minus
Query: 7 ctcttcctgtttcccatcatggcgcaggatcaaggtgaaaaagaaaaccccatgcgggaa 66
||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||
Sbjct: 2142614 ctcttcctgtttcccatcatggcgcaggatcaaggtgaaaaggagaaccccacgagggaa 2142555
Query: 67 cttcgcatccgcaagctctgcctcaacatctgcgttggggagagtggagacagactgacc 126
| || ||||| || ||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 2142554 cctcacatccacaggctctgcctcaacatctctgagggggagagtggagacagactcacc 2142495
Query: 127 cgggcagccaaggtgctggagcagctcacaggccagactcctgtgttttccaaagctaga 186
||||||||| ||||||||||||||||||||||||||| |||| ||| | |||||| | |
Sbjct: 2142494 tgggcagcca-ggtgctggagcagctcacaggccagacccctgcgttctgcaaagccaaa 2142436
Query: 187 tacaccgtcagatcctttggcatcaggagaaatgaaaagattgccgtccactgcacagtc 246
|||||| |||||||| |||||| ||||||||| |||||| ||||||||| ||||||||||
Sbjct: 2142435 tacaccatcagatcccttggcaccaggagaaaggaaaaggttgccgtccgctgcacagtc 2142376
Query: 247 cgtggggccaaggcagaagaaatacttgagaaaggtctaaaggtgcgagagtacgagtta 306
|||||| || ||| |||||||||||||||||||||||| |||||| |||| |||||||
Sbjct: 2142375 cgtgggaccgagggagaagaaatacttgagaaaggtctgcaggtgcaagagcgcgagtta 2142316
Query: 307 agaaaaaataacttctcggatactggaaactttggttttgggatccaagaacacatcgat 366
||| ||||||||||| | || ||||||||||||||||| |||||||||||||||||| ||
Sbjct: 2142315 aga-aaaataacttcccagacactggaaactttggtttggggatccaagaacacatcaat 2142257
Query: 367 ctggggatcaaatatgacccaagcattggtatctacggcctggacttctacgtggtgctg 426
||||| ||||||| | ||||||| | |||||||| |||| ||||||||| ||||||||
Sbjct: 2142256 ctgggaatcaaatgtcacccaagtaccagtatctacagcctagacttctacatggtgctg 2142197
Query: 427 ggtaggccaggtttcagcatcgcagacaagaagcgcaggacaggctgcattggggccaaa 486
||||||||||||||||||||||||||||| || | |||||||||||||| |||| ||
Sbjct: 2142196 ggtaggccaggtttcagcatcgcagacaaaaatcccaggacaggctgcactgggccc--- 2142140
Query: 487 cacagaatcagcaaagaggaggccatgcgctggttccagcagaagta 533
|||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct: 2142139 cacagagtcagcaaagaggaggccatgtgctggttccagcacaagta 2142093
>Sscrofa_Chr05
|| Length = 111506441
Score = 541 bits (273), Expect = e-151
Identities = 402/442 (90%), Gaps = 6/442 (1%)
Strand = Plus / Minus
Query: 30 gcaggatcaaggtgaaaaagaaaaccccatgcgggaacttcgcatccgcaagctctgcct 89
|||||||||||||||||| || ||||||||| |||||||| ||||| | |||||||||||
Sbjct: 50315215 gcaggatcaaggtgaaaaggagaaccccatgtgggaactttgcatctgtaagctctgcct 50315156
Query: 90 caacatctgcgttggggagagtggagacagactgacccgggcagccaaggtgctggagca 149
||||| |||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 50315155 caacacctgcgtggggaagagtggagacggactgacccgggcagccaaggtgctggagtt 50315096
Query: 150 gctcacaggccagactcctgtgttttccaaagctaga----tacaccgtcagatcctttg 205
|||||||||||||||||||||||| |||||||||||| || | |||||||||||||
Sbjct: 50315095 gctcacaggccagactcctgtgttctccaaagctagacagataaatagtcagatcctttg 50315036
Query: 206 gcatcaggagaaatgaaaagattgccgtccactgcacagtccgtggggccaaggcagaag 265
|||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 50315035 gcatcaggagaagcaaaaagattgccatccactgcacagtccgtggggccgaggcaaaag 50314976
Query: 266 aaatacttgagaaaggtctaaaggtgcgagagtacgagttaagaaaaaataacttctcgg 325
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 50314975 aaatacttgagaaaggtctaaaggtgcgagagcacgagttaagaaaaaataacttctc-g 50314917
Query: 326 atactggaaactttggttttgggatccaagaacacatcgatctggggatcaaatatgacc 385
||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| || |
Sbjct: 50314916 atactggaaactttggttttgggatccaagaacacatggatccggggatcagatacgatc 50314857
Query: 386 caagcattggtatctacggcctggacttctacgt-ggtgctgggtaggccaggtttcagc 444
|| |||||||||||| ||||||| |||||| || |||||||||||||||||||||||||
Sbjct: 50314856 cacacattggtatctatggcctgggcttctatgtgggtgctgggtaggccaggtttcagc 50314797
Query: 445 atcgcagacaagaagcgcagga 466
||||||||||||||| ||||||
Sbjct: 50314796 atcgcagacaagaagtgcagga 50314775
Score = 216 bits (109), Expect = 1e-53
Identities = 139/149 (93%)
Strand = Plus / Minus
Query: 461 gcaggacaggctgcattggggccaaacacagaatcagcaaagaggaggccatgcgctggt 520
|||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50313284 gcaggataggttgcactggggccaaacacagaatcagcaaagaggaggccatgcgctggt 50313225
Query: 521 tccagcagaagtatgatgggatcatccttcctggcaaataaattcccgtttctattcaaa 580
|| |||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 50313224 tctagcagaagtacgatgggatcatcctccctggcaaataaattcccatttctatccaaa 50313165
Query: 581 aggctaataaaaagttttcattgaaatgt 609
| ||||||||||| |||||||||||||||
Sbjct: 50313164 aagctaataaaaaattttcattgaaatgt 50313136
>Sscrofa_Chr13
|| Length = 218635234
Score = 505 bits (255), Expect = e-141
Identities = 389/429 (90%), Gaps = 6/429 (1%)
Strand = Plus / Minus
Query: 80 agctctgcctcaacatctgcgttggggagagtggagacagactgacccgggcagccaagg 139
|||||||||||||||||||| | |||||||||||||||||||||||| || |||||||||
Sbjct: 13369028 agctctgcctcaacatctgcatgggggagagtggagacagactgaccagg-cagccaagg 13368970
Query: 140 tgctggagca-gctcacaggccagactcctgtgttttccaaagctagatacaccgtcaga 198
||| || ||| ||| ||||||| || |||||||| |||||||||||||||||| ||| |
Sbjct: 13368969 tgcaggtgcaagctgacaggccggagccctgtgttctccaaagctagatacaccatcaaa 13368910
Query: 199 tcctttggcatcaggagaaatgaaaagattgccgtccactgcacagtccgtggggccaag 258
|||||||||| ||||||||||||| || |||| |||||||||||||| |||||||||||
Sbjct: 13368909 tcctttggcaccaggagaaatgaa--gactgccatccactgcacagtctgtggggccaag 13368852
Query: 259 gcagaagaaatacttgagaaaggtctaaaggtgcgagagtacgagttaagaaaaaataac 318
||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 13368851 gcagaagaaatacttaagaaaggtctaaaggtgcaagagtataggttaagaaaaaataac 13368792
Query: 319 ttctcggatactggaaactttggttttgggatccaagaa--cacatcgatctggggatca 376
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13368791 ttctcagatactggaaactttggttttgggatccaagaaaacacatcgatctggggatca 13368732
Query: 377 aatatgacccaagcattggtatctacggcctggacttctacgtggtgctgggtaggccag 436
||||||||||||||||||| ||||| ||||||||||||| |||||| |||||| ||||
Sbjct: 13368731 gatatgacccaagcattggtgtctacagcctggacttctatgtggtgttgggtacgccat 13368672
Query: 437 gtttcagcatcgcagacaagaagcgcaggacaggctgcattggggccaaacacagaatca 496
||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct: 13368671 gtttcagcatcgcagacaagaagtgcagggaaggctgcactggggccaaacacagaaaca 13368612
Query: 497 gcaaagagg 505
|||||||||
Sbjct: 13368611 gcaaagagg 13368603
Score = 216 bits (109), Expect = 1e-53
Identities = 382/471 (81%), Gaps = 4/471 (0%)
Strand = Plus / Minus
Query: 20 ccatcatggcgcaggatcaaggtgaaaaagaaaaccccatgcgggaacttcgcatccgca 79
|||||||||| |||||| |||| ||| || | |||||| | ||||||| ||| | | |
Sbjct: 126669920 ccatcatggcttgggatcagggtggaaaggagagccccattcaggaactttgcacctgta 126669861
Query: 80 agctctgcctcaacatctgcgttggggagagtggagacagactgacccgggcagccaagg 139
||||||||||||||||| | || ||| |||||||||| ||| |||| ||||||| |
Sbjct: 126669860 agctctgcctcaacatcggtgt--gggcgagtggagaccaactaacccaggcagcctcag 126669803
Query: 140 tgctggagcagctcacaggccagactcctgtgttttccaaagctagatacaccgtcagat 199
||||||||| |||| ||||||||| |||||||| ||||||||| || |||| |||| |
Sbjct: 126669802 ggctggagcaactcataggccagacccctgtgttctccaaagctggagccaccatcaggt 126669743
Query: 200 cctttggcatcaggagaaatgaaaagattgccgtccactgcacagtccgtggggccaagg 259
| ||||||||| || ||| ||||||||||||| || || |||||| |||||||||| |
Sbjct: 126669742 cttttggcatcgggggaagtgaaaagattgccactcattgaacagtctgtggggccaaag 126669683
Query: 260 cagaagaaatacttgagaaaggtctaaaggtgcgagagtacgagttaagaaaaaataact 319
||| |||| || ||| ||||||||| | | |||| ||| |||||||||| ||
Sbjct: 126669682 cagggaaaatcctgaagagaggtctaaatgcatggaagtatgagctaagaaaaaaaaaaa 126669623
Query: 320 t--ctcggatactggaaactttggttttgggatccaagaacacatcgatctggggatcaa 377
| ||| ||||||| ||| || ||||| || ||||| |||||||||||||||||||||||
Sbjct: 126669622 ttgctcagatactgaaaatttgggtttgggaatccaggaacacatcgatctggggatcaa 126669563
Query: 378 atatgacccaagcattggtatctacggcctggacttctacgtggtgctgggtaggccagg 437
|| |||| |||||||||||||||| || |||||||||| |||||||| ||||||||||
Sbjct: 126669562 atgtgactcaagcattggtatctatggtctggacttctgtgtggtgctaagtaggccagg 126669503
Query: 438 tttcagcatcgcagacaagaagcgcaggacaggctgcattggggccaaaca 488
|||||||||| |||| |||| | |||| ||||||| || ||||||||||||
Sbjct: 126669502 tttcagcatcacagataagatgtgcagaacaggcttcactggggccaaaca 126669452
Score = 165 bits (83), Expect = 4e-38
Identities = 110/119 (92%)
Strand = Plus / Minus
Query: 490 agaatcagcaaagaggaggccatgcgctggttccagcagaagtatgatgggatcatcctt 549
|||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 13368355 agaaacagcaaagaggagaccatgcgctggttccagcagaaatatgatgggatcatcctt 13368296
Query: 550 cctggcaaataaattcccgtttctattcaaaaggctaataaaaagttttcattgaaatg 608
||||||||||||||||| ||||| || ||||||| ||||||||||||||| |||||||
Sbjct: 13368295 cctggcaaataaattcctgtttccatctaaaaggccaataaaaagttttcactgaaatg 13368237
Score = 83.8 bits (42), Expect = 1e-13
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 7 ctcttcctgtttcccatcatggcgcaggatcaaggtgaaaaagaaaaccccatgcgggaa 66
||||||||||||||||||||||||||||| |||||||| || || ||||||| | |||||
Sbjct: 13369802 ctcttcctgtttcccatcatggcgcaggaccaaggtgagaaggagaaccccacgtgggaa 13369743
Query: 67 cttcgcatcc 76
|||| |||||
Sbjct: 13369742 cttcacatcc 13369733
>Sscrofa_Chr06
|| Length = 157765593
Score = 293 bits (148), Expect = 6e-77
Identities = 151/152 (99%)
Strand = Plus / Minus
Query: 30 gcaggatcaaggtgaaaaagaaaaccccatgcgggaacttcgcatccgcaagctctgcct 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75503354 gcaggatcaaggtgaaaaagaaaaccccatgcgggaacttcgcatccgcaagctctgcct 75503295
Query: 90 caacatctgcgttggggagagtggagacagactgacccgggcagccaaggtgctggagca 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75503294 caacatctgcgttggggagagtggagacagactgacccgggcagccaaggtgctggagca 75503235
Query: 150 gctcacaggccagactcctgtgttttccaaag 181
|||||||||||||||||||||||| |||||||
Sbjct: 75503234 gctcacaggccagactcctgtgttctccaaag 75503203
Score = 270 bits (136), Expect = 9e-70
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 287 aggtgcgagagtacgagttaagaaaaaataacttctcggatactggaaactttggttttg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75501949 aggtgcgagagtacgagttaagaaaaaataacttctcggatactggaaactttggttttg 75501890
Query: 347 ggatccaagaacacatcgatctggggatcaaatatgacccaagcattggtatctacggcc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75501889 ggatccaagaacacatcgatctggggatcaaatatgacccaagcattggtatctacggcc 75501830
Query: 407 tggacttctacgtggt 422
||||||||||||||||
Sbjct: 75501829 tggacttctacgtggt 75501814
Score = 222 bits (112), Expect = 2e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 420 ggtgctgggtaggccaggtttcagcatcgcagacaagaagcgcaggacaggctgcattgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75500554 ggtgctgggtaggccaggtttcagcatcgcagacaagaagcgcaggacaggctgcattgg 75500495
Query: 480 ggccaaacacagaatcagcaaagaggaggccatgcgctggttccagcagaag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75500494 ggccaaacacagaatcagcaaagaggaggccatgcgctggttccagcagaag 75500443
Score = 222 bits (112), Expect = 2e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 180 agctagatacaccgtcagatcctttggcatcaggagaaatgaaaagattgccgtccactg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75502354 agctagatacaccgtcagatcctttggcatcaggagaaatgaaaagattgccgtccactg 75502295
Query: 240 cacagtccgtggggccaaggcagaagaaatacttgagaaaggtctaaaggtg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75502294 cacagtccgtggggccaaggcagaagaaatacttgagaaaggtctaaaggtg 75502243
Score = 159 bits (80), Expect = 2e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 530 agtatgatgggatcatccttcctggcaaataaattcccgtttctattcaaaaggctaata 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75500020 agtatgatgggatcatccttcctggcaaataaattcccgtttctattcaaaaggctaata 75499961
Query: 590 aaaagttttcattgaaatgt 609
||||||||||||||||||||
Sbjct: 75499960 aaaagttttcattgaaatgt 75499941
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,644,675
Number of extensions: 5113
Number of successful extensions: 5113
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5101
Number of HSP's successfully gapped: 17
Length of query: 665
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 644
Effective length of database: 2,808,413,156
Effective search space: 1808618072464
Effective search space used: 1808618072464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)