Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012381
(1202 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776911.2| voltage-dependent anion-selective channel prote... 545 e-155
Alignment gi|XP_001252363.1| PREDICTED: voltage-dependent anion-selective... 537 e-153
Alignment gi|XP_002687714.1| PREDICTED: voltage-dependent anion-selective... 536 e-152
Alignment gi|NP_776910.2| voltage-dependent anion-selective channel prote... 414 e-115
Alignment gi|NP_777154.1| voltage-dependent anion-selective channel prote... 399 e-111
Alignment gi|XP_001788121.1| PREDICTED: voltage-dependent anion channel 2... 307 1e-83
>ref|NP_776911.2| voltage-dependent anion-selective channel protein 2 [Bos taurus].
Length = 294
Score = 545 bits (1405), Expect = e-155
Identities = 264/280 (94%), Positives = 266/280 (95%)
Frame = +3
Query: 171 MASYGQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 350
MA+YGQ C RPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
Sbjct: 1 MATYGQNCARPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 60
Query: 351 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXX 530
DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNT
Sbjct: 61 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGK 120
Query: 531 XXXXXXXXXXRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 710
REC+NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
Sbjct: 121 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 180
Query: 711 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 890
AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
Sbjct: 181 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 240
Query: 891 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN
Sbjct: 241 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 280
>ref|XP_001252363.1| PREDICTED: voltage-dependent anion-selective channel protein 2-like
[Bos taurus].
Length = 294
Score = 537 bits (1384), Expect = e-153
Identities = 260/280 (92%), Positives = 265/280 (94%)
Frame = +3
Query: 171 MASYGQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 350
MA+YGQ C RP+CIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
Sbjct: 1 MATYGQNCTRPVCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 60
Query: 351 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXX 530
DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAI+DQICQGLKLTFDTTFSPNT
Sbjct: 61 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIKDQICQGLKLTFDTTFSPNTGK 120
Query: 531 XXXXXXXXXXRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 710
REC+NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
Sbjct: 121 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 180
Query: 711 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 890
AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
Sbjct: 181 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 240
Query: 891 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
TASISAKVNNSSLIGVG TQTLRPGVKLTLSALVDGK+IN
Sbjct: 241 TASISAKVNNSSLIGVGDTQTLRPGVKLTLSALVDGKNIN 280
>ref|XP_002687714.1| PREDICTED: voltage-dependent anion-selective channel protein 2-like
[Bos taurus].
Length = 294
Score = 536 bits (1380), Expect = e-152
Identities = 259/280 (92%), Positives = 265/280 (94%)
Frame = +3
Query: 171 MASYGQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 350
MA+YGQ C RP+CIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
Sbjct: 1 MATYGQNCTRPVCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 60
Query: 351 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXX 530
DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAI+DQICQGLKLTFDTTFSPNT
Sbjct: 61 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIKDQICQGLKLTFDTTFSPNTGK 120
Query: 531 XXXXXXXXXXRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 710
REC+NLGCDVDFDFAGPAIHGSAVFGY+GWLAGYQMTFDSAKSKLTRNNF
Sbjct: 121 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYKGWLAGYQMTFDSAKSKLTRNNF 180
Query: 711 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 890
AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
Sbjct: 181 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 240
Query: 891 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
TASISAKVNNSSLIGVG TQTLRPGVKLTLSALVDGK+IN
Sbjct: 241 TASISAKVNNSSLIGVGDTQTLRPGVKLTLSALVDGKNIN 280
>ref|NP_776910.2| voltage-dependent anion-selective channel protein 1 [Bos taurus].
Length = 283
Score = 414 bits (1063), Expect = e-115
Identities = 192/269 (71%), Positives = 235/269 (87%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNT R
Sbjct: 61 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 121 EHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+ YTQTL+PG+KLTLSAL+DGK++N
Sbjct: 241 SLIGLRYTQTLKPGIKLTLSALLDGKNVN 269
>ref|NP_777154.1| voltage-dependent anion-selective channel protein 3 [Bos taurus].
Length = 283
Score = 399 bits (1025), Expect = e-111
Identities = 187/269 (69%), Positives = 227/269 (84%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
MC P+Y DLGKAA+D+FNKG+GFG+VK+D++TKSCSGVEFSTSG + TDTGK +G LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KYK C YGLTFT+KWNTDNTLGTEI+ E+++ +GLKLT DT F PNT R
Sbjct: 61 KYKICNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
+C +LG +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQL
Sbjct: 121 DCFSLGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY+LD S+SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+GYTQTLRPGVKLTLSAL+DGK+ N
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFN 269
>ref|XP_001788121.1| PREDICTED: voltage-dependent anion channel 2-like, partial [Bos
taurus].
Length = 179
Score = 307 bits (786), Expect = 1e-83
Identities = 150/165 (90%), Positives = 152/165 (92%)
Frame = +3
Query: 516 PNTXXXXXXXXXXXXRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKL 695
PNT REC+NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKL
Sbjct: 1 PNTGKKSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKL 60
Query: 696 TRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAK 875
TRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAK
Sbjct: 61 TRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAK 120
Query: 876 YQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
YQLDPTASISAKVNNSSLIGVG TQTLRPGVKLTLSALVDGK+IN
Sbjct: 121 YQLDPTASISAKVNNSSLIGVGDTQTLRPGVKLTLSALVDGKNIN 165
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,380,167
Number of extensions: 1250604
Number of successful extensions: 3898
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3889
Number of HSP's successfully gapped: 6
Length of query: 400
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 296
Effective length of database: 14,240,222
Effective search space: 4215105712
Effective search space used: 4215105712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012381
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012381
(1202 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536398.2| PREDICTED: similar to voltage-dependent anion c... 545 e-155
Alignment gi|XP_851742.1| PREDICTED: similar to voltage-dependent anion c... 545 e-155
Alignment gi|XP_531907.1| PREDICTED: similar to Voltage-dependent anion-s... 417 e-116
Alignment gi|XP_532686.2| PREDICTED: similar to Voltage-dependent anion-s... 395 e-110
Alignment gi|XP_848519.1| PREDICTED: similar to Voltage-dependent anion-s... 395 e-110
Alignment gi|XP_536597.1| PREDICTED: similar to Voltage-dependent anion-s... 369 e-102
Alignment gi|XP_867456.1| PREDICTED: similar to Voltage-dependent anion-s... 353 2e-97
Alignment gi|XP_856263.1| PREDICTED: similar to Voltage-dependent anion-s... 352 3e-97
Alignment gi|XP_855226.1| PREDICTED: similar to Voltage-dependent anion-s... 294 1e-79
Alignment gi|XP_864350.1| PREDICTED: similar to voltage-dependent anion c... 210 2e-54
>ref|XP_536398.2| PREDICTED: similar to voltage-dependent anion channel 2 isoform 1
[Canis familiaris].
Length = 294
Score = 545 bits (1405), Expect = e-155
Identities = 263/280 (93%), Positives = 267/280 (95%)
Frame = +3
Query: 171 MASYGQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 350
MA+YGQ+C RPMC+PPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
Sbjct: 1 MATYGQSCARPMCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 60
Query: 351 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXX 530
DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNT
Sbjct: 61 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGK 120
Query: 531 XXXXXXXXXXRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 710
REC+NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
Sbjct: 121 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 180
Query: 711 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 890
AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
Sbjct: 181 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 240
Query: 891 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN
Sbjct: 241 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 280
>ref|XP_851742.1| PREDICTED: similar to voltage-dependent anion channel 2 isoform 2
[Canis familiaris].
Length = 294
Score = 545 bits (1405), Expect = e-155
Identities = 263/280 (93%), Positives = 267/280 (95%)
Frame = +3
Query: 171 MASYGQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 350
MA+YGQ+C RPMC+PPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
Sbjct: 1 MATYGQSCARPMCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 60
Query: 351 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXX 530
DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNT
Sbjct: 61 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGK 120
Query: 531 XXXXXXXXXXRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 710
REC+NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
Sbjct: 121 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 180
Query: 711 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 890
AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
Sbjct: 181 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 240
Query: 891 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN
Sbjct: 241 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 280
>ref|XP_531907.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 1 (VDAC-1) (hVDAC1) (Outer mitochondrial membrane
protein porin 1) (Plasmalemmal porin) (Porin 31HL) (Porin
31HM) [Canis familiaris].
Length = 283
Score = 417 bits (1071), Expect = e-116
Identities = 193/269 (71%), Positives = 236/269 (87%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNT R
Sbjct: 61 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 121 EHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+GYTQTL+PG+KLTLSAL+DGK++N
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVN 269
>ref|XP_532686.2| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 3 (VDAC-3) (mVDAC3) (Outer mitochondrial membrane
protein porin 3) isoform 1 [Canis familiaris].
Length = 283
Score = 395 bits (1016), Expect = e-110
Identities = 184/269 (68%), Positives = 226/269 (84%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
MC P+Y DLGKAA+D+FNKG+GFG+VK+D++TKSCSGVEFSTSG + TDTGK +G LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KYK C YGLTFT+KWNTDNTLGTEI++E+++ +GLKLT DT F PNT R
Sbjct: 61 KYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
+C ++G +VD DF+GP I+G AV +EGWLAGYQM+FD+AK KL++NNFA+GY+ DFQL
Sbjct: 121 DCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKFKLSQNNFALGYKAADFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N T FGIAAKY+LD S+SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTHFGIAAKYKLDCRTSLSAKVNNA 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+GYTQTLRPGVKLTLSAL+DGK+ N
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFN 269
>ref|XP_848519.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 3 (VDAC-3) (mVDAC3) (Outer mitochondrial membrane
protein porin 3) isoform 1 [Canis familiaris].
Length = 284
Score = 395 bits (1015), Expect = e-110
Identities = 186/270 (68%), Positives = 228/270 (84%), Gaps = 1/270 (0%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGV-EFSTSGSSNTDTGKVTGTLE 380
MC P+Y DLGKAA+D+FNKG+GFG+VK+D++TKSCSGV EFSTSG + TDTGK +G LE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 381 TKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXX 560
TKYK C YGLTFT+KWNTDNTLGTEI++E+++ +GLKLT DT F PNT
Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
Query: 561 RECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQ 740
R+C ++G +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQ
Sbjct: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 741 LHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNN 920
LHT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY+LD S+SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240
Query: 921 SSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
+SLIG+GYTQTLRPGVKLTLSAL+DGK+ N
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFN 270
>ref|XP_536597.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 1 (VDAC-1) (hVDAC1) (Outer mitochondrial
membrane protein porin 1) (Plasmalemmal porin) (Porin
31HL) (Porin 31HM) [Canis familiaris].
Length = 256
Score = 369 bits (947), Expect = e-102
Identities = 172/250 (68%), Positives = 213/250 (85%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++ GS+NT+T KVTG+LET
Sbjct: 1 MPVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSWGSANTETTKVTGSLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KY+W EYGLTFTEK +TDNTLGTEI +EDQ+ +GLKLTFD++FSPNT R
Sbjct: 61 KYRWTEYGLTFTEKRDTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGGKNAKIKTGYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
E +NLGCD+DFD AGP+I G+ V GYEGWLAGYQ+ F++AKS++T++NF VGY+T +FQL
Sbjct: 121 EHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQVNFETAKSRVTQSNFVVGYKTDEFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGI AKYQ+DP A SAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETTVNLAWTAGNSNTRFGIVAKYQIDPDACFSAKVNNS 240
Query: 924 SLIGVGYTQT 953
SLIG+GYTQT
Sbjct: 241 SLIGLGYTQT 250
>ref|XP_867456.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 3 (VDAC-3) (hVDAC3) (Outer mitochondrial
membrane protein porin 3) isoform 2 [Canis familiaris].
Length = 247
Score = 353 bits (905), Expect = 2e-97
Identities = 163/245 (66%), Positives = 203/245 (82%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
MC P+Y DLGKAA+D+FNKG+GFG+VK+D++TKSCSGVEFSTSG + TDTGK +G LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KYK C YGLTFT+KWNTDNTLGTEI++E+++ +GLKLT DT F PNT R
Sbjct: 61 KYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
+C ++G +VD DF+GP I+G AV +EGWLAGYQM+FD+AK KL++NNFA+GY+ DFQL
Sbjct: 121 DCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKFKLSQNNFALGYKAADFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N T FGIAAKY+LD S+SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTHFGIAAKYKLDCRTSLSAKVNNA 240
Query: 924 SLIGV 938
SLIG+
Sbjct: 241 SLIGL 245
>ref|XP_856263.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 3 (VDAC-3) (hVDAC3) (Outer mitochondrial
membrane protein porin 3) isoform 2 [Canis familiaris].
Length = 248
Score = 352 bits (904), Expect = 3e-97
Identities = 165/246 (67%), Positives = 205/246 (83%), Gaps = 1/246 (0%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGV-EFSTSGSSNTDTGKVTGTLE 380
MC P+Y DLGKAA+D+FNKG+GFG+VK+D++TKSCSGV EFSTSG + TDTGK +G LE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 381 TKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXX 560
TKYK C YGLTFT+KWNTDNTLGTEI++E+++ +GLKLT DT F PNT
Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
Query: 561 RECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQ 740
R+C ++G +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQ
Sbjct: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 741 LHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNN 920
LHT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY+LD S+SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240
Query: 921 SSLIGV 938
+SLIG+
Sbjct: 241 ASLIGL 246
>ref|XP_855226.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 3 (VDAC-3) (hVDAC3) (Outer mitochondrial membrane
protein porin 3) [Canis familiaris].
Length = 368
Score = 294 bits (752), Expect = 1e-79
Identities = 148/269 (55%), Positives = 189/269 (70%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
MC +Y DLGK A+D+FN+G+GF +VK D++TKSCS VE STS + TDTGK +G LET
Sbjct: 39 MCNALTYRDLGKTAKDVFNEGYGFRVVKRDLRTKSCSRVELSTSSHAYTDTGKASGNLET 98
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KYK C Y LTFT+KWNTDNT T+I++E+++ + LK T DT F PNT R
Sbjct: 99 KYKVCNYRLTFTQKWNTDNTPATKISLENKLAEELKQTLDTIFVPNTGKKSGKLKASYKR 158
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
+C +LG +V DF+G +I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQL
Sbjct: 159 DCFSLGSNVGRDFSGSSIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 218
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HT+VND TEFG +N T FGIAAKY LD S+SA+VNN+
Sbjct: 219 HTHVNDDTEFG-------------------RPSSNNTHFGIAAKYMLDCRTSLSAEVNNA 259
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLI +GYT TLRPGVKLTLSAL++ K+ +
Sbjct: 260 SLIRLGYTPTLRPGVKLTLSALINRKNFS 288
>ref|XP_864350.1| PREDICTED: similar to voltage-dependent anion channel 2 isoform 3
[Canis familiaris].
Length = 104
Score = 210 bits (535), Expect = 2e-54
Identities = 97/102 (95%), Positives = 101/102 (99%)
Frame = +3
Query: 171 MASYGQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 350
MA+YGQ+C RPMC+PPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
Sbjct: 1 MATYGQSCARPMCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 60
Query: 351 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQI 476
DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQ+
Sbjct: 61 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQV 102
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,373,899
Number of extensions: 1285637
Number of successful extensions: 4052
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4031
Number of HSP's successfully gapped: 12
Length of query: 400
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 295
Effective length of database: 15,374,224
Effective search space: 4535396080
Effective search space used: 4535396080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012381
(1202 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999534.1| voltage-dependent anion-selective channel prote... 549 e-156
Alignment gi|NP_999125.1| voltage-dependent anion-selective channel prote... 417 e-117
Alignment gi|XP_003134279.2| PREDICTED: voltage-dependent anion-selective... 400 e-111
Alignment gi|NP_999529.1| voltage-dependent anion-selective channel prote... 398 e-111
Alignment gi|XP_003361001.1| PREDICTED: voltage-dependent anion-selective... 395 e-110
>ref|NP_999534.1| voltage-dependent anion-selective channel protein 2 [Sus scrofa].
Length = 294
Score = 549 bits (1414), Expect = e-156
Identities = 266/280 (95%), Positives = 268/280 (95%)
Frame = +3
Query: 171 MASYGQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 350
MA++GQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
Sbjct: 1 MATHGQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 60
Query: 351 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXX 530
DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNT
Sbjct: 61 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGK 120
Query: 531 XXXXXXXXXXRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 710
RECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
Sbjct: 121 KSGKIKSSYKRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 180
Query: 711 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 890
AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
Sbjct: 181 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 240
Query: 891 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN
Sbjct: 241 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 280
>ref|NP_999125.1| voltage-dependent anion-selective channel protein 1 [Sus scrofa].
Length = 283
Score = 417 bits (1072), Expect = e-117
Identities = 194/269 (72%), Positives = 236/269 (87%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNT R
Sbjct: 61 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
E VNLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 121 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+GYTQTL+PG+KLTLSAL+DGK++N
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVN 269
>ref|XP_003134279.2| PREDICTED: voltage-dependent anion-selective channel protein 3-like
isoform 1 [Sus scrofa].
Length = 283
Score = 400 bits (1027), Expect = e-111
Identities = 187/269 (69%), Positives = 228/269 (84%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
MC P+Y DLGKAA+D+FNKG+GFG+VK+D++TKSCSGVEFSTSG + TDTGK +G LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KYK C+YGLTFT+KWNTDNTLGTEI++E+++ +GLKLT DT F PNT R
Sbjct: 61 KYKICDYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
EC ++G +VD DFAGP I+G AV EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQL
Sbjct: 121 ECFSIGSNVDIDFAGPTIYGWAVLALEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY+LD S+SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+GYTQTLRPGVKLTLSAL+DGK+ +
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFS 269
>ref|NP_999529.1| voltage-dependent anion-selective channel protein 3 [Sus scrofa].
Length = 283
Score = 398 bits (1022), Expect = e-111
Identities = 186/269 (69%), Positives = 228/269 (84%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
MC P+Y DLGKAA+D+FNKG+GFG+VK+D++TKSCSGVEFSTSG + TDTGK +G LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KYK C++GLTFT+KWNTDNTLGTEI++E+++ +GLKLT DT F PNT R
Sbjct: 61 KYKICDHGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
EC ++G +VD DFAGP I+G AV EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQL
Sbjct: 121 ECFSIGSNVDIDFAGPTIYGWAVLALEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY+LD S+SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+GYTQTLRPGVKLTLSAL+DGK+ +
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFS 269
>ref|XP_003361001.1| PREDICTED: voltage-dependent anion-selective channel protein 3-like
isoform 2 [Sus scrofa].
Length = 284
Score = 395 bits (1015), Expect = e-110
Identities = 187/270 (69%), Positives = 228/270 (84%), Gaps = 1/270 (0%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGV-EFSTSGSSNTDTGKVTGTLE 380
MC P+Y DLGKAA+D+FNKG+GFG+VK+D++TKSCSGV EFSTSG + TDTGK +G LE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 381 TKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXX 560
TKYK C+YGLTFT+KWNTDNTLGTEI++E+++ +GLKLT DT F PNT
Sbjct: 61 TKYKICDYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
Query: 561 RECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQ 740
REC ++G +VD DFAGP I+G AV EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQ
Sbjct: 121 RECFSIGSNVDIDFAGPTIYGWAVLALEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 741 LHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNN 920
LHT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY+LD S+SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240
Query: 921 SSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
+SLIG+GYTQTLRPGVKLTLSAL+DGK+ +
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFS 270
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,844,907
Number of extensions: 801098
Number of successful extensions: 2318
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2313
Number of HSP's successfully gapped: 5
Length of query: 400
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 299
Effective length of database: 8,829,335
Effective search space: 2639971165
Effective search space used: 2639971165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012381
(1202 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035825.1| voltage-dependent anion-selective channel prote... 527 e-150
Alignment gi|NP_035824.1| voltage-dependent anion-selective channel prote... 413 e-115
Alignment gi|NP_035826.1| voltage-dependent anion-selective channel prote... 400 e-111
Alignment gi|NP_001185927.1| voltage-dependent anion-selective channel pr... 395 e-110
>ref|NP_035825.1| voltage-dependent anion-selective channel protein 2 [Mus musculus].
Length = 295
Score = 527 bits (1358), Expect = e-150
Identities = 254/273 (93%), Positives = 258/273 (94%)
Frame = +3
Query: 192 CPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTG 371
CPRPMCIPP YADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKV+G
Sbjct: 9 CPRPMCIPPPYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVSG 68
Query: 372 TLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXX 551
TLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNT
Sbjct: 69 TLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKS 128
Query: 552 XXXRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTG 731
REC+NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTR+NFAVGYRTG
Sbjct: 129 AYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRSNFAVGYRTG 188
Query: 732 DFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAK 911
DFQLHTNVN+GTEFGGSIYQKVCED DTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAK
Sbjct: 189 DFQLHTNVNNGTEFGGSIYQKVCEDFDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAK 248
Query: 912 VNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
VNNSSLIGVGYTQTLRPGVKLTLSALVDGKS N
Sbjct: 249 VNNSSLIGVGYTQTLRPGVKLTLSALVDGKSFN 281
>ref|NP_035824.1| voltage-dependent anion-selective channel protein 1 [Mus musculus].
Length = 283
Score = 413 bits (1062), Expect = e-115
Identities = 191/269 (71%), Positives = 235/269 (87%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KV G+LET
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNT R
Sbjct: 61 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F+++KS++T++NFAVGY+T +FQL
Sbjct: 121 EHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNS 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+GYTQTL+PG+KLTLSAL+DGK++N
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVN 269
>ref|NP_035826.1| voltage-dependent anion-selective channel protein 3 isoform 2 [Mus
musculus].
Length = 283
Score = 400 bits (1027), Expect = e-111
Identities = 188/269 (69%), Positives = 227/269 (84%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
MC P+Y DLGKAA+D+FNKG+GFG+VK+D+KTKSCSGVEFSTSG + TDTGK +G LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KYK C YGLTFT+KWNTDNTLGTEI+ E+++ +GLKLT DT F PNT R
Sbjct: 61 KYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYRR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
+C +LG +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQL
Sbjct: 121 DCFSLGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY+LD S+SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNERIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+GYTQTLRPGVKLTLSAL+DGK+ N
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFN 269
>ref|NP_001185927.1| voltage-dependent anion-selective channel protein 3 isoform 1 [Mus
musculus].
Length = 284
Score = 395 bits (1015), Expect = e-110
Identities = 188/270 (69%), Positives = 227/270 (84%), Gaps = 1/270 (0%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGV-EFSTSGSSNTDTGKVTGTLE 380
MC P+Y DLGKAA+D+FNKG+GFG+VK+D+KTKSCSGV EFSTSG + TDTGK +G LE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 381 TKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXX 560
TKYK C YGLTFT+KWNTDNTLGTEI+ E+++ +GLKLT DT F PNT
Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYR 120
Query: 561 RECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQ 740
R+C +LG +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQ
Sbjct: 121 RDCFSLGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 741 LHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNN 920
LHT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY+LD S+SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNERIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240
Query: 921 SSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
+SLIG+GYTQTLRPGVKLTLSAL+DGK+ N
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFN 270
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,595,013
Number of extensions: 1078919
Number of successful extensions: 3175
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3167
Number of HSP's successfully gapped: 4
Length of query: 400
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 296
Effective length of database: 12,493,815
Effective search space: 3698169240
Effective search space used: 3698169240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012381
(1202 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171752.1| voltage-dependent anion-selective channel pr... 545 e-155
Alignment gi|NP_003366.2| voltage-dependent anion-selective channel prote... 545 e-155
Alignment gi|NP_001171712.1| voltage-dependent anion-selective channel pr... 527 e-150
Alignment gi|NP_003365.1| voltage-dependent anion-selective channel prote... 416 e-116
Alignment gi|NP_005653.3| voltage-dependent anion-selective channel prote... 397 e-110
Alignment gi|NP_001129166.1| voltage-dependent anion-selective channel pr... 392 e-109
>ref|NP_001171752.1| voltage-dependent anion-selective channel protein 2 isoform 2 [Homo
sapiens].
Length = 294
Score = 545 bits (1405), Expect = e-155
Identities = 264/280 (94%), Positives = 267/280 (95%)
Frame = +3
Query: 171 MASYGQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 350
MA++GQTC RPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
Sbjct: 1 MATHGQTCARPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 60
Query: 351 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXX 530
DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNT
Sbjct: 61 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGK 120
Query: 531 XXXXXXXXXXRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 710
REC+NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
Sbjct: 121 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 180
Query: 711 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 890
AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
Sbjct: 181 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 240
Query: 891 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN
Sbjct: 241 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 280
>ref|NP_003366.2| voltage-dependent anion-selective channel protein 2 isoform 2 [Homo
sapiens].
Length = 294
Score = 545 bits (1405), Expect = e-155
Identities = 264/280 (94%), Positives = 267/280 (95%)
Frame = +3
Query: 171 MASYGQTCPRPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 350
MA++GQTC RPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT
Sbjct: 1 MATHGQTCARPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNT 60
Query: 351 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXX 530
DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNT
Sbjct: 61 DTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGK 120
Query: 531 XXXXXXXXXXRECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 710
REC+NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF
Sbjct: 121 KSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNF 180
Query: 711 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 890
AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP
Sbjct: 181 AVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDP 240
Query: 891 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN
Sbjct: 241 TASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN 280
>ref|NP_001171712.1| voltage-dependent anion-selective channel protein 2 isoform 1 [Homo
sapiens].
Length = 309
Score = 527 bits (1357), Expect = e-150
Identities = 256/269 (95%), Positives = 257/269 (95%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET
Sbjct: 27 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 86
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNT R
Sbjct: 87 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 146
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
EC+NLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL
Sbjct: 147 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 206
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS
Sbjct: 207 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 266
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIGVGYTQTLRPGVKLTLSALVDGKSIN
Sbjct: 267 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 295
>ref|NP_003365.1| voltage-dependent anion-selective channel protein 1 [Homo sapiens].
Length = 283
Score = 416 bits (1068), Expect = e-116
Identities = 192/269 (71%), Positives = 236/269 (87%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNT R
Sbjct: 61 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
E +NLGCD+DFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 121 EHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+GYTQTL+PG+KLTLSAL+DGK++N
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVN 269
>ref|NP_005653.3| voltage-dependent anion-selective channel protein 3 isoform b [Homo
sapiens].
Length = 283
Score = 397 bits (1019), Expect = e-110
Identities = 186/269 (69%), Positives = 226/269 (84%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 383
MC P+Y DLGKAA+D+FNKG+GFG+VK+D+KTKSCSGVEFSTSG + TDTGK +G LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 384 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXXR 563
KYK C YGLTFT+KWNTDNTLGTEI+ E+++ +GLKLT DT F PNT R
Sbjct: 61 KYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 564 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 743
+C ++G +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQL
Sbjct: 121 DCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180
Query: 744 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 923
HT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY LD S+SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNNA 240
Query: 924 SLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
SLIG+GYTQTLRPGVKLTLSAL+DGK+ +
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFS 269
>ref|NP_001129166.1| voltage-dependent anion-selective channel protein 3 isoform a [Homo
sapiens].
Length = 284
Score = 392 bits (1007), Expect = e-109
Identities = 186/270 (68%), Positives = 226/270 (83%), Gaps = 1/270 (0%)
Frame = +3
Query: 204 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGV-EFSTSGSSNTDTGKVTGTLE 380
MC P+Y DLGKAA+D+FNKG+GFG+VK+D+KTKSCSGV EFSTSG + TDTGK +G LE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 381 TKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTXXXXXXXXXXXX 560
TKYK C YGLTFT+KWNTDNTLGTEI+ E+++ +GLKLT DT F PNT
Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
Query: 561 RECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQ 740
R+C ++G +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQ
Sbjct: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 741 LHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNN 920
LHT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY LD S+SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240
Query: 921 SSLIGVGYTQTLRPGVKLTLSALVDGKSIN 1010
+SLIG+GYTQTLRPGVKLTLSAL+DGK+ +
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFS 270
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,692,569
Number of extensions: 1276385
Number of successful extensions: 3841
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3831
Number of HSP's successfully gapped: 6
Length of query: 400
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 295
Effective length of database: 14,835,944
Effective search space: 4376603480
Effective search space used: 4376603480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012381
(1202 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1176 0.0
Sscrofa_Chr05 1176 0.0
Sscrofa_Chr02 684 0.0
gb|JH118641.1| Sus scrofa unplaced genomic scaffold ChrUScaf1421 345 3e-92
Sscrofa_Chr04 98 1e-17
>Sscrofa_Chr13
|| Length = 218635234
Score = 1176 bits (593), Expect = 0.0
Identities = 820/890 (92%), Gaps = 13/890 (1%)
Strand = Plus / Plus
Query: 199 ggccaatgtgtattccgccatcatatgctgaccttggcaaagctgccagagatattttca 258
||||| |||||||||| |||||| |||||||||||||||||| ||||||||| |||||
Sbjct: 149242584 ggccagtgtgtattcctccatcacctgctgaccttggcaaagccaccagagatagtttca 149242643
Query: 259 acaaaggatttggttttgggttggtgaaactggatgtgaaaacaaagtcatgcagtggcg 318
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 149242644 acaaaggatttggttttggattggtgaaactggatgcgaaaacaaagtcatgcagtggcg 149242703
Query: 319 tggaattctcaacatctggttcatctaatacagacactggtaaagttactgggaccttgg 378
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 149242704 tggaattctcaacatctggttcatctaatccagacactggtaaagttactgggattttgg 149242763
Query: 379 agaccaaatataaatggtgtgagtatggtctgactttcacagaaaagtggaacactgata 438
|||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct: 149242764 agaccaaatataaatggtgtgagtgtggtctgactttcacagagaagtagaacactg--- 149242820
Query: 439 acactctgggaacagaaatcgctattgaagaccagatttgtcaaggtttgaaactgacat 498
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 149242821 aaactctgggaacagaaattgctattgaagaccagatttgtcaaggtttgaaactgacat 149242880
Query: 499 ttgataccaccttttcaccaaacacagggaagaaaagtggtaaaatc-aagtcttcttac 557
|||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||
Sbjct: 149242881 ttgataccacctattcaccaa--acaggaaagaaaagtggtaaaatcaaagtcttctt-- 149242936
Query: 558 aagagggagtgtgtaaaccttggttgtgatgttgactttgattttgctggacctgcaatc 617
| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149242937 atgagagagtgtatagaccttggttgtgatgttgactttgattttgctggacctgcaatc 149242996
Query: 618 catggttcagctgtctttggttatgagggctggcttgctgg-gtaccagatgacctttga 676
|||||| |||||||||||||||||||||||||||||||| || | | | |||
Sbjct: 149242997 tgtggttctgctgtctttggttatgagggctggcttgctggtgtctttggt----tatga 149243052
Query: 677 cagtgccaaatcaaagctgacaaggaataactttgcagtgggctacaggactggggactt 736
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 149243053 cagtgccaaatcaaagctgacaaggaataactatgcagtgggctacaggactggggactt 149243112
Query: 737 ccagctacacactaatgtcaatgatgggacagaatttggaggatcaatttatcagaaagt 796
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 149243113 ccagctacacactgatgtcaatgatgggacagaatttggaggatcaatttattggaaagt 149243172
Query: 797 atgtgaagatcttgacacttcagtaaaccttgcttggacatcaggaaccaactgcactcg 856
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 149243173 atgtgaagatcttgacacttcagtaaaccttgcttggacatcagcaaccaactacactcg 149243232
Query: 857 ctttggcattgcagctaaatatcagttggatcccactgcttccatttctgcaaaagtcaa 916
|||||||| ||||||||| ||||| || | ||||||||||||||||||||||||||||||
Sbjct: 149243233 ctttggcactgcagctaagtatcatttagctcccactgcttccatttctgcaaaagtcaa 149243292
Query: 917 caactctagtttaattggagtgggctacactcagaccctgaggcctggtgtgaagctgac 976
||||||||||||||||||| || || ||||||||| |||||||||||||| ||||| ||
Sbjct: 149243293 caactctagtttaattggaatgagcagcactcagactctgaggcctggtgtaaagctcac 149243352
Query: 977 actgtctgctctggtagatgggaagagcattaatgctggaggccacaaacttgggcttgc 1036
|| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 149243353 accatctgctctgatagatgggaagagcattaatgctggaggccacaaacttcggcttgc 149243412
Query: 1037 cctggagttggaggcttaatccagctgaaagaaacctctgggaatggata 1086
|||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 149243413 cctggagttggaggcttaatccagctgaaagaaaccaccaggaatggata 149243462
Score = 67.9 bits (34), Expect = 1e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1155 tgatcaaaacaaaggatgatctaaacaagagctgtatt 1192
||||||||||||||||||| ||||||||||||||||||
Sbjct: 149243546 tgatcaaaacaaaggatgaactaaacaagagctgtatt 149243583
>Sscrofa_Chr05
|| Length = 111506441
Score = 1176 bits (593), Expect = 0.0
Identities = 832/908 (91%), Gaps = 9/908 (0%)
Strand = Plus / Plus
Query: 224 tgctgaccttggcaaagctgccagagatattttcaacaaaggatttggttttggg-ttgg 282
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct: 19088323 tgctgaccttggcaaagctgccagagatattttcaataaaggatttggtttgggggttgg 19088382
Query: 283 tgaaactggatgtgaaaacaaagtcatgcagtggcgtggaattctcaacatctggttcat 342
||||||||| ||||| ||||||||||||| ||||| ||||||||| |||| ||||||||
Sbjct: 19088383 tgaaactggctgtgagaacaaagtcatgcggtggcatggaattcttaacacgtggttcat 19088442
Query: 343 ctaatacagacactgg-taaagttactgggaccttggagaccaaatataaatggtgtgag 401
|||| || |||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 19088443 ctaacccattcactgggtaaagttgctgggaccttggagaccaaatatgaatggtgtgag 19088502
Query: 402 tatggtctgactttcacagaaaagtggaacactgataacactctgggaacagaaatcgct 461
|||||||||||||||| || ||||||||||||||||| |||| |||||||||||||||
Sbjct: 19088503 catggtctgactttcactgagaagtggaacactgataatgctcttggaacagaaatcgct 19088562
Query: 462 attgaagaccagatttgtcaaggtttgaaactgacatttgataccaccttttcaccaaac 521
|||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |
Sbjct: 19088563 attgaagaccagatttgtcaaggtttgaaactgacatttgattctaccttttcagcaagc 19088622
Query: 522 acagggaagaaaagtggtaaaatcaagtcttcttacaagagggagtgtgtaaaccttggt 581
||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 19088623 acaggaaagaaaagtggtaaaatcgagtcttctcacaagagggagtgtataaaccttggt 19088682
Query: 582 tgtgatgttgactttgattttgctggacctgcaatccatggttcagctgtctttggttat 641
|| ||||||||||||| ||| |||||||||| ||||||||||||||||||| ||
Sbjct: 19088683 tgggatgttgactttg------ctgaacctgcaatctgtggttcagctgtctttggtcat 19088736
Query: 642 gagggctggcttgctgggtaccagatgacctttgacagtgccaaatcaaagctgacaagg 701
|||||||||||||||||| ||||||||||| ||| ||| ||| || ||||||||||||||
Sbjct: 19088737 gagggctggcttgctgggcaccagatgacccttgccagggccgaagcaaagctgacaagg 19088796
Query: 702 aataactttgcagtgggctacaggactggggacttccagctacacactaatgtcaatgat 761
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 19088797 aataactttgcagtgggctacaggactggggactaccagctacacactaatgtcaaggat 19088856
Query: 762 gggacagaatttggaggatcaatttatcagaaagtatgtgaagatcttgacacttcagta 821
||||||| |||||||||||| |||||||||||| || ||| |||||||||||||||||||
Sbjct: 19088857 gggacagcatttggaggatcgatttatcagaaa-tacgtggagatcttgacacttcagta 19088915
Query: 822 aaccttgcttggacatcaggaaccaactgcactcgctttggcattgcagctaaatatcag 881
|||||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||
Sbjct: 19088916 aacctttcttggacatcagggaccaacggcactagctttggcattgcagctaaatatcag 19088975
Query: 882 ttggatcccactgcttccatttctgcaaaagtcaacaactctagtttaattggagtgggc 941
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 19088976 ttggatcccactacttccatttctgcaaaagtcaacaactctagttaaattggagtgggc 19089035
Query: 942 tacactcagaccctgaggcctggtgtgaagctgacactgtctgctctggtagatgggaag 1001
| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct: 19089036 tgcactcagaccctgaggcctgctgtgaagctgtcactgtctgctgtggtagatgggaag 19089095
Query: 1002 agcattaatgctggaggccacaaacttgggcttgccctggagttggaggcttaatccagc 1061
||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||| |
Sbjct: 19089096 agcattaatgctggaagccacaaacttgggcttgccctggagctggaagcttaatccatc 19089155
Query: 1062 tgaaagaaacctctgggaatggatatcagatttggccttaatatatttccagtgtgacca 1121
|||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 19089156 ggaaataaacctctgggaatggatatcagatttgaccttatattatttccagtgtgacca 19089215
Query: 1122 gcaagctt 1129
||| ||||
Sbjct: 19089216 gcaggctt 19089223
Score = 60.0 bits (30), Expect = 3e-06
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 705 aactttgcagtgggctacaggactggggacttccagctacacactaatgtcaatgatggg 764
|||||||| || ||||||| ||||| || |||||||| |||||||| || |||||||||
Sbjct: 65715604 aactttgctgttggctacaagactgatgagttccagcttcacactaaagtaaatgatggg 65715663
Query: 765 acagaatttggaggatcaatttatcagaa 793
|||| ||||| || || |||||||||||
Sbjct: 65715664 acag--tttggcggctccatttatcagaa 65715690
>Sscrofa_Chr02
|| Length = 162569375
Score = 684 bits (345), Expect = 0.0
Identities = 582/659 (88%), Gaps = 4/659 (0%)
Strand = Plus / Minus
Query: 471 cagatttgtcaaggtttgaaactgacatttgataccaccttttcaccaaacacagggaag 530
||||||| ||||||||||||||||| | |||||| ||| |||||||| |||| || |||
Sbjct: 120760733 cagatttctcaaggtttgaaactgatacttgataacacattttcaccgaacaatggaaag 120760674
Query: 531 aaaagtggtaaaatcaagtcttcttacaagagggagtgtgtaaaccttggttgtgatgtt 590
|||||||||||| | ||||||||||| || ||||||| | ||||||||||||||||||||
Sbjct: 120760673 aaaagtggtaaagttaagtcttcttataaaagggagtatataaaccttggttgtgatgtt 120760614
Query: 591 gactttgattttgctggacctgcaatccatggttcagctgtctttggttatgagggctgg 650
||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct: 120760613 gacttgtattttgctggacctgcaattcatggttcaggggtctttggttatgagggcttg 120760554
Query: 651 cttgctgggtaccagatgacctttgacagtgccaaatcaaagctgacaaggaataacttt 710
||||||||||||||| ||||||||||||||||| |||||||||| |||| | ||| | |
Sbjct: 120760553 cttgctgggtaccagttgacctttgacagtgcctaatcaaagctcacaaacagtaagtct 120760494
Query: 711 gcagtgggctacaggactggggacttccagctacacactaatgtcaatgatgggacagaa 770
||||||||||| |||||||||||||| |||| ||||||||||||| |||| ||||||||
Sbjct: 120760493 gcagtgggctatgggactggggacttcaagctgcacactaatgtcattgataggacagaa 120760434
Query: 771 tttggaggatcaatttatcagaaagtatgtgaagatcttgacacttcagtaaaccttgct 830
|| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 120760433 ttcagaggatcaatttatcaaaaagtatgtgacgatcttgacacatcagtaaaccttgct 120760374
Query: 831 tggacatcaggaaccaactgcactcgctttggcattgcagctaaatatcagttggatccc 890
|||||||| ||||||||||| || ||||| | |||||||| ||| |||||||||||
Sbjct: 120760373 tggacatccagaaccaactgcccttgcttt-gtattgcagccaaa---gagttggatccc 120760318
Query: 891 actgcttccatttctgcaaaagtcaacaactctagtttaattggagtgggctacactcag 950
|||| |||||||||||||||||||||||| |||||||||| | ||||||| || ||||||
Sbjct: 120760317 actgtttccatttctgcaaaagtcaacaattctagtttaagtagagtgggatatactcag 120760258
Query: 951 accctgaggcctggtgtgaagctgacactgtctgctctggtagatgggaagagcattaat 1010
|| |||||||||||||||||||| || | |||| |||||||||||||||| |||| ||
Sbjct: 120760257 actctgaggcctggtgtgaagcttccattatctgtgctggtagatgggaagaacattcat 120760198
Query: 1011 gctggaggccacaaacttgggcttgccctggagttggaggcttaatccagctgaaagaaa 1070
|||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 120760197 gctggagggtacaaacttgggttttccctggagttggaggcttaacgcagctgaaagaaa 120760138
Query: 1071 cctctgggaatggatatcagatttggccttaatatatttccagtgtgaccagcaagctt 1129
|||||||||| |||| | ||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 120760137 cctctgggaacggatgtgagatttgcccttaatatatttccagtgtgaccagcaggctt 120760079
Score = 367 bits (185), Expect = 9e-99
Identities = 288/322 (89%), Gaps = 4/322 (1%)
Strand = Plus / Minus
Query: 162 ggcttcgccatggcgtcctatggacagacctgcccacggccaatgtgtattccgccatca 221
||||||||||||| | ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 120761316 ggcttcgccatggtgatctatggacagaactgccaatggccaatgtatattcttccatca 120761257
Query: 222 tatgctgaccttggcaaagctgccagagatattttcaacaaaggatttggttttgggttg 281
| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 120761256 tgtgctgaccttggcaaagctgccagagatattttcaacaaaggatttggtttggagttg 120761197
Query: 282 gtgaaactggatgtgaaaacaaagtcatgcagtggcgtggaattctcaacatctggttca 341
||||||||| |||||| |||||||| ||| ||||| |||||||||||||||||||| |||
Sbjct: 120761196 gtgaaactgtatgtgagaacaaagtgatgaagtggagtggaattctcaacatctggctca 120761137
Query: 342 tctaatacagacactggtaaagttactgggaccttggagaccaaatataaatggtgtgag 401
|| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 120761136 tccgatacagacactgctaaagtttctgggaccttggagaccaaatataaatggtgtgaa 120761077
Query: 402 tatggtctgactttcacagaaaagtggaacactgataacactctgggaacagaaatcgct 461
| |||||||||||||||||||||||| ||||||||| ||||||| |||||| |||
Sbjct: 120761076 tgtggtctgactttcacagaaaagtgaaacactgat----ttctgggagaagaaattgct 120761021
Query: 462 attgaagaccagatttgtcaag 483
||||||||| ||||||||||||
Sbjct: 120761020 attgaagactagatttgtcaag 120760999
>gb|JH118641.1| Sus scrofa unplaced genomic scaffold ChrUScaf1421
Length = 64461
Score = 345 bits (174), Expect = 3e-92
Identities = 219/240 (91%)
Strand = Plus / Plus
Query: 963 ggtgtgaagctgacactgtctgctctggtagatgggaagagcattaatgctggaggccac 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22846 ggtgtgaagctgacactgtctgctctggtagatgggaagagcattaatgctggaggccac 22905
Query: 1023 aaacttgggcttgccctggagttggaggcttaatccagctgaaagaaacctctgggaatg 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22906 aaacttgggcttgccctggagttggaggcttaatccagctgaaagaaacctctgggaatg 22965
Query: 1083 gatatcagatttggccttaatatatttccagtgtgaccagcaagcttnnnnnnnnnnnnn 1142
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 22966 gatatcagatttggccttaatatatttccagtgtgaccagcaggcttccccacccccacc 23025
Query: 1143 nnnnnaaaaaagtgatcaaaacaaaggatgatctaaacaagagctgtattttaaatattt 1202
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 23026 cccccaaaaaggtgatcaaaccaaaggatgatctaaacaagagctgtattttaaatattt 23085
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 320 ggaattctcaacatctggttcatctaatacagacactggtaaagttactgggaccttgga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15554 ggaattctcaacatctggttcatctaatacagacactggtaaagttactgggaccttgga 15613
Query: 380 gaccaaatataaatggtgtgagtatggtctgactttcacagaaaagtggaacactgataa 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15614 gaccaaatataaatggtgtgagtatggtctgactttcacagaaaagtggaacactgataa 15673
Query: 440 cactctgggaacagaaatcgctattgaagaccag 473
||||||||||||||||||||||||||||||||||
Sbjct: 15674 cactctgggaacagaaatcgctattgaagaccag 15707
Score = 301 bits (152), Expect = 5e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 755 caatgatgggacagaatttggaggatcaatttatcagaaagtatgtgaagatcttgacac 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18504 caatgatgggacagaatttggaggatcaatttatcagaaagtatgtgaagatcttgacac 18563
Query: 815 ttcagtaaaccttgcttggacatcaggaaccaactgcactcgctttggcattgcagctaa 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18564 ttcagtaaaccttgcttggacatcaggaaccaactgcactcgctttggcattgcagctaa 18623
Query: 875 atatcagttggatcccactgcttccatttctg 906
||||||||||||||||||||||||||||||||
Sbjct: 18624 atatcagttggatcccactgcttccatttctg 18655
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 526 ggaagaaaagtggtaaaatcaagtcttcttacaagagggagtgtgtaaaccttggttgtg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17435 ggaagaaaagtggtaaaatcaagtcttcttacaagagggagtgtgtaaaccttggttgtg 17494
Query: 586 atgttgactttgattttgctggacctgcaatccatggttcagctgtctttggttatgagg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17495 atgttgactttgattttgctggacctgcaatccatggttcagctgtctttggttatgagg 17554
Query: 646 gctggc 651
||||||
Sbjct: 17555 gctggc 17560
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 202 caatgtgtattccgccatcatatgctgaccttggcaaagctgccagagatattttcaaca 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11644 caatgtgtattccgccatcatatgctgaccttggcaaagctgccagagatattttcaaca 11703
Query: 262 aaggatttggt 272
|||||||||||
Sbjct: 11704 aaggatttggt 11714
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 906 gcaaaagtcaacaactctagtttaattggagtgggctacactcagaccctgaggcctggt 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20923 gcaaaagtcaacaactctagtttaattggagtgggctacactcagaccctgaggcctggt 20982
Score = 115 bits (58), Expect = 6e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 144 cagatcacctcatccgacggcttcgccatggcgtcctatggacagacctgcccacggc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10498 cagatcacctcatccgacggcttcgccatggcgtcctatggacagacctgcccacggc 10555
Score = 111 bits (56), Expect = 9e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 472 agatttgtcaaggtttgaaactgacatttgataccaccttttcaccaaacacaggg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15797 agatttgtcaaggtttgaaactgacatttgataccaccttttcaccaaacacaggg 15852
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 270 ggttttgggttggtgaaactggatgtgaaaacaaagtcatgcagtggcgtgg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12550 ggttttgggttggtgaaactggatgtgaaaacaaagtcatgcagtggcgtgg 12601
>Sscrofa_Chr04
|| Length = 143465943
Score = 97.6 bits (49), Expect = 1e-17
Identities = 123/147 (83%), Gaps = 8/147 (5%)
Strand = Plus / Plus
Query: 241 ctgccagagatattttcaacaaaggatttggttttgggttggtgaaactggatgtgaaaa 300
||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct: 97605022 ctgccagagatattttcaatgaaggatttggtttggggttg-----actggatgtgaaaa 97605076
Query: 301 caaagtcatgcagtggcgtggaattctcaacatctggttcatctaatacagacactggta 360
|||| ||||| | | ||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 97605077 caaa---atgcactaacacggaattctcaatgtctgggtcatctaatacagacacaggtc 97605133
Query: 361 aagttactgggaccttggagaccaaat 387
||| | ||||||||||||| |||||||
Sbjct: 97605134 aaggtcctgggaccttggaaaccaaat 97605160
Score = 83.8 bits (42), Expect = 2e-13
Identities = 170/212 (80%), Gaps = 3/212 (1%)
Strand = Plus / Plus
Query: 666 atgacctttgacagtgccaaatcaaagctgacaaggaataactttgcagtgggctacagg 725
||||||| ||||||||||||||||||||||||||| |||||||||| ||| || |||
Sbjct: 97605414 atgacctgggacagtgccaaatcaaagctgacaagggataactttgcggtgctttatagg 97605473
Query: 726 actggggacttccagctacacactaatgtcaatgat---gggacagaatttggaggatca 782
|| |||||||| | || || || |||| | | | ||||||||||||||||||| |
Sbjct: 97605474 gctagggacttctatctccatacccatgttattattctggggacagaatttggaggatta 97605533
Query: 783 atttatcagaaagtatgtgaagatcttgacacttcagtaaaccttgcttggacatcagga 842
||||||||||| | |||||||| | |||| |||| | | || ||| ||||||||| ||
Sbjct: 97605534 atttatcagaaggaatgtgaagctgttgatacttgaatgaatctttcttggacattgggt 97605593
Query: 843 accaactgcactcgctttggcattgcagctaa 874
|||||||||||| | ||||||||||||||
Sbjct: 97605594 cccaactgcactctttggggcattgcagctaa 97605625
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,054,099
Number of extensions: 289
Number of successful extensions: 289
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 23
Length of query: 1202
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1181
Effective length of database: 2,808,413,156
Effective search space: 3316735937236
Effective search space used: 3316735937236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)