Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012386
(1181 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014941.1| B-cell receptor-associated protein 31 [Bos t... 242 7e-74
Alignment gi|NP_001033164.1| B-cell receptor-associated protein 29 [Bos t... 114 2e-28
>ref|NP_001014941.1| B-cell receptor-associated protein 31 [Bos taurus].
Length = 245
Score = 242 bits (618), Expect(2) = 7e-74
Identities = 139/218 (63%), Positives = 142/218 (65%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFF
Sbjct: 1 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 486 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 665
DA+REIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDAVREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 666 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 845
TLISQQATLLASN ND LKKE +EE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASDAAKKYMEENDLLKKE-AGGVTKLGGRDSEVKVQEE 179
Query: 846 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSGG 959
NRS V+KQKLEKAENEALAMRKQS G
Sbjct: 180 NRSLKADLKRLKDELAVNKQKLEKAENEALAMRKQSKG 217
Score = 54.7 bits (130), Expect(2) = 7e-74
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQAAVDGPPEQKGE 1044
+GLTKEYDRLLEEHTKLQAAVDGP ++K E
Sbjct: 216 KGLTKEYDRLLEEHTKLQAAVDGPSDKKEE 245
>ref|NP_001033164.1| B-cell receptor-associated protein 29 [Bos taurus].
Length = 240
Score = 114 bits (285), Expect(2) = 2e-28
Identities = 72/217 (33%), Positives = 100/217 (46%), Gaps = 1/217 (0%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
M+LQWTAVATFLYAE+ +L+ C+PFI P+RWQKIF + + ++ N F
Sbjct: 1 MTLQWTAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60
Query: 486 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 662
DA+RE+RKY T + + + P A EH MKLFR+QRNLYI+G
Sbjct: 61 VLFLDAVREVRKYSSTHTIEKSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 663 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 842
VTLI+Q A L+ N++LK+ E
Sbjct: 121 VTLITQLAKELSHKGVLKHQAENINQAAKKFMEENERLKR-----LLKNYGKEEEHILEA 175
Query: 843 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQS 953
EN+ + L KA+N+ + M+ QS
Sbjct: 176 ENKKLEEDKEKLKTELKKASDALSKAQNDVMIMKMQS 212
Score = 30.8 bits (68), Expect(2) = 2e-28
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQ 1008
E L+KEYDRLL EH++LQ
Sbjct: 213 ERLSKEYDRLLREHSELQ 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,483,339
Number of extensions: 1164448
Number of successful extensions: 6714
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6659
Number of HSP's successfully gapped: 4
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012386
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012386
(1181 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538200.1| PREDICTED: similar to B-cell receptor-associate... 246 5e-75
Alignment gi|XP_853216.1| PREDICTED: similar to B-cell receptor-associate... 134 2e-31
Alignment gi|XP_533092.2| PREDICTED: similar to B-cell receptor-associate... 118 1e-29
>ref|XP_538200.1| PREDICTED: similar to B-cell receptor-associated protein 31
(BCR-associated protein Bap31) (p28 Bap31) (CDM protein)
(6C6-AG tumor-associated antigen) (DXS1357E) [Canis
familiaris].
Length = 246
Score = 246 bits (629), Expect(2) = 5e-75
Identities = 138/218 (63%), Positives = 142/218 (65%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFF
Sbjct: 1 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 486 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 665
DA+REIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDAVREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 666 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 845
TLISQQATLLASN NDQLKKE EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKEAAAGGVKLDGKDAEEKVEEE 180
Query: 846 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSGG 959
NRS ++KQKLEKAE EA+AMRKQS G
Sbjct: 181 NRSLKADLKKLKDELDINKQKLEKAEREAVAMRKQSEG 218
Score = 54.3 bits (129), Expect(2) = 5e-75
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQAAVDGPPEQKGE 1044
EGLTKEYDRLLEEH KLQAAVDGP ++K E
Sbjct: 217 EGLTKEYDRLLEEHAKLQAAVDGPTDKKEE 246
>ref|XP_853216.1| PREDICTED: similar to B-cell receptor-associated protein 31 [Canis
familiaris].
Length = 144
Score = 134 bits (336), Expect = 2e-31
Identities = 74/125 (59%), Positives = 78/125 (62%)
Frame = +3
Query: 411 FKSRLVELVVTYGNTFFXXXXXXXXXXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMK 590
F+ LVELVVTYGNTFF DA+REIRKYDDVTEKVNLQNNPGAVEHFHMK
Sbjct: 5 FQVCLVELVVTYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAVEHFHMK 64
Query: 591 LFRAQRNLYIAGXXXXXXXXXXXXVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXND 770
LFRAQRNLY+AG VTLISQQATLL +N ND
Sbjct: 65 LFRAQRNLYVAGFSLLLSFLLRGLVTLISQQATLLVANEAFKKQAESASEAAKKYMEEND 124
Query: 771 QLKKE 785
QLKKE
Sbjct: 125 QLKKE 129
>ref|XP_533092.2| PREDICTED: similar to B-cell receptor-associated protein BAP29
isoform d [Canis familiaris].
Length = 293
Score = 118 bits (295), Expect(2) = 1e-29
Identities = 73/217 (33%), Positives = 100/217 (46%), Gaps = 1/217 (0%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N F
Sbjct: 51 MTLQWVAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 110
Query: 486 XXXXDALREIRKYDDVTE-KVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 662
DA+RE+RKY + + L PGA EH MKLFR+QRNLYI+G
Sbjct: 111 VLFLDAVREVRKYSSIPAIEKGLTTRPGAYEHAQMKLFRSQRNLYISGFSLFFWLVLRRL 170
Query: 663 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 842
VTLI+Q A L++ N++LK+ E
Sbjct: 171 VTLITQLAKELSNKGVLKTQAENTNEAAKKFMEENERLKQ-----LLKSYVKEEEHILET 225
Query: 843 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQS 953
EN+ + + L KA+ + + MR QS
Sbjct: 226 ENKKLVEDQEKLKTELKKTSEALSKAQKDVMTMRMQS 262
Score = 31.2 bits (69), Expect(2) = 1e-29
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQ 1008
E L+KEYDRLL+EH++LQ
Sbjct: 263 ERLSKEYDRLLKEHSELQ 280
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,288,743
Number of extensions: 1200766
Number of successful extensions: 7057
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7025
Number of HSP's successfully gapped: 5
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012386
(1181 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135528.2| PREDICTED: b-cell receptor-associated protei... 253 1e-77
Alignment gi|XP_003357558.1| PREDICTED: b-cell receptor-associated protei... 113 9e-28
Alignment gi|XP_003357557.1| PREDICTED: b-cell receptor-associated protei... 113 9e-28
>ref|XP_003135528.2| PREDICTED: b-cell receptor-associated protein 31-like [Sus scrofa].
Length = 246
Score = 253 bits (645), Expect(2) = 1e-77
Identities = 143/218 (65%), Positives = 143/218 (65%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFF
Sbjct: 1 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 486 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 665
DALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 666 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 845
TLISQQATLLASN NDQLKKE EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKEAAVGGVKLDGGDAGGKVEEE 180
Query: 846 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSGG 959
NRS VSKQKLEKAENEALAMRKQS G
Sbjct: 181 NRSLKAELKRLKEELAVSKQKLEKAENEALAMRKQSEG 218
Score = 56.2 bits (134), Expect(2) = 1e-77
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQAAVDGPPEQKGE 1044
EGLTKEYDRLLEEHTKLQAAVDGP ++K E
Sbjct: 217 EGLTKEYDRLLEEHTKLQAAVDGPTDKKEE 246
>ref|XP_003357558.1| PREDICTED: b-cell receptor-associated protein 29-like isoform 2
[Sus scrofa].
Length = 241
Score = 113 bits (283), Expect(2) = 9e-28
Identities = 72/217 (33%), Positives = 99/217 (45%), Gaps = 1/217 (0%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N F
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAFLTIIVLLI 60
Query: 486 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 662
DA+RE+RKY + + + P A EH MKLFR+QRNLYI+G
Sbjct: 61 VLFLDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 663 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 842
VTLI+Q A L++ N++LK+ EE
Sbjct: 121 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKR-----LLKNYGKEEDHILEE 175
Query: 843 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQS 953
EN+ L KA+N+ + M+ QS
Sbjct: 176 ENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQS 212
Score = 28.5 bits (62), Expect(2) = 9e-28
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQ 1008
E L+KEYD LL+EH++LQ
Sbjct: 213 ERLSKEYDLLLKEHSELQ 230
>ref|XP_003357557.1| PREDICTED: b-cell receptor-associated protein 29-like isoform 1
[Sus scrofa].
Length = 241
Score = 113 bits (283), Expect(2) = 9e-28
Identities = 72/217 (33%), Positives = 99/217 (45%), Gaps = 1/217 (0%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N F
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAFLTIIVLLI 60
Query: 486 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 662
DA+RE+RKY + + + P A EH MKLFR+QRNLYI+G
Sbjct: 61 VLFLDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 663 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 842
VTLI+Q A L++ N++LK+ EE
Sbjct: 121 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKR-----LLKNYGKEEDHILEE 175
Query: 843 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQS 953
EN+ L KA+N+ + M+ QS
Sbjct: 176 ENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQS 212
Score = 28.5 bits (62), Expect(2) = 9e-28
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQ 1008
E L+KEYD LL+EH++LQ
Sbjct: 213 ERLSKEYDLLLKEHSELQ 230
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,187,223
Number of extensions: 754142
Number of successful extensions: 4318
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4295
Number of HSP's successfully gapped: 6
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012386
(1181 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036190.2| B-cell receptor-associated protein 31 [Mus musc... 229 4e-68
Alignment gi|NP_001157562.1| B-cell receptor-associated protein 29 [Mus m... 110 2e-27
Alignment gi|NP_031556.1| B-cell receptor-associated protein 29 [Mus musc... 110 2e-27
>ref|NP_036190.2| B-cell receptor-associated protein 31 [Mus musculus].
Length = 245
Score = 229 bits (583), Expect(2) = 4e-68
Identities = 131/218 (60%), Positives = 138/218 (63%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
MSLQWT VATFLYAEVFAVLLLCIPFISPKRWQK+FKSRLVELVVTYGNTFF
Sbjct: 1 MSLQWTTVATFLYAEVFAVLLLCIPFISPKRWQKVFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 486 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 665
DA+REI KYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDAVREILKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 666 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 845
TLISQQATLLASN NDQLKK EE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAEDGDKLDIGNTEMKL-EE 179
Query: 846 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSGG 959
N+S +K+KLEKAENEALAM+KQS G
Sbjct: 180 NKSLKNDLRKLKDELASTKKKLEKAENEALAMQKQSEG 217
Score = 48.5 bits (114), Expect(2) = 4e-68
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQAAVDGPPEQKGE 1044
EGLTKEYDRLLEEH KLQA+V GP +K E
Sbjct: 216 EGLTKEYDRLLEEHAKLQASVRGPSVKKEE 245
>ref|NP_001157562.1| B-cell receptor-associated protein 29 [Mus musculus].
Length = 240
Score = 110 bits (274), Expect(2) = 2e-27
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 2/218 (0%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
M++QW AVA+FLYAE+ +LL C+PFI P+RWQKIF + + ++ N F
Sbjct: 1 MTIQWAAVASFLYAEIGLILLFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60
Query: 486 XXXXDALREIRKYD--DVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXX 659
DA+RE+RKY +V EK N P A EH MKLFR+QRNLYI+G
Sbjct: 61 ILFLDAVREVRKYSSTNVVEK-NSAIRPSAFEHTQMKLFRSQRNLYISGFSLFFWLVLRR 119
Query: 660 XVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXE 839
VTLI+Q A +A+ N++LK E
Sbjct: 120 LVTLITQLAKEIANKGVLKIQAENTNKAAKKFMEENEKLK------LGLRNDNAEEHLLE 173
Query: 840 EENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQS 953
EN+ + L KA+N+ + M+ QS
Sbjct: 174 AENKKLIESKENLKTELKKASDALLKAQNDVMTMKIQS 211
Score = 31.2 bits (69), Expect(2) = 2e-27
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQ 1008
E L+KEYDRLL+EH++LQ
Sbjct: 212 ERLSKEYDRLLKEHSELQ 229
>ref|NP_031556.1| B-cell receptor-associated protein 29 [Mus musculus].
Length = 240
Score = 110 bits (274), Expect(2) = 2e-27
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 2/218 (0%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
M++QW AVA+FLYAE+ +LL C+PFI P+RWQKIF + + ++ N F
Sbjct: 1 MTIQWAAVASFLYAEIGLILLFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60
Query: 486 XXXXDALREIRKYD--DVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXX 659
DA+RE+RKY +V EK N P A EH MKLFR+QRNLYI+G
Sbjct: 61 ILFLDAVREVRKYSSTNVVEK-NSAIRPSAFEHTQMKLFRSQRNLYISGFSLFFWLVLRR 119
Query: 660 XVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXE 839
VTLI+Q A +A+ N++LK E
Sbjct: 120 LVTLITQLAKEIANKGVLKIQAENTNKAAKKFMEENEKLK------LGLRNDNAEEHLLE 173
Query: 840 EENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQS 953
EN+ + L KA+N+ + M+ QS
Sbjct: 174 AENKKLIESKENLKTELKKASDALLKAQNDVMTMKIQS 211
Score = 31.2 bits (69), Expect(2) = 2e-27
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQ 1008
E L+KEYDRLL+EH++LQ
Sbjct: 212 ERLSKEYDRLLKEHSELQ 229
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,586,407
Number of extensions: 950321
Number of successful extensions: 4909
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4874
Number of HSP's successfully gapped: 6
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012386
(1181 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001132929.1| B-cell receptor-associated protein 31 isofor... 252 1e-76
Alignment gi|NP_005736.3| B-cell receptor-associated protein 31 isoform b... 237 4e-72
Alignment gi|NP_001132913.1| B-cell receptor-associated protein 31 isofor... 237 4e-72
Alignment gi|NP_001008405.1| B-cell receptor-associated protein 29 isofor... 116 1e-28
Alignment gi|NP_061332.2| B-cell receptor-associated protein 29 isoform b... 116 1e-28
>ref|NP_001132929.1| B-cell receptor-associated protein 31 isoform a [Homo sapiens].
Length = 313
Score = 252 bits (644), Expect(2) = 1e-76
Identities = 141/233 (60%), Positives = 148/233 (63%)
Frame = +3
Query: 261 GNRRASPCWKASSTRMSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVV 440
GN+ S C K SS RMSLQWTAVATFLYAEVF VLLLCIPFISPKRWQKIFKSRLVEL+V
Sbjct: 53 GNKLTSSCGKPSSNRMSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLV 112
Query: 441 TYGNTFFXXXXXXXXXXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYI 620
+YGNTFF DA+REIRKYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYI
Sbjct: 113 SYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYI 172
Query: 621 AGXXXXXXXXXXXXVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXX 800
AG VTLISQQATLLASN NDQLKK
Sbjct: 173 AGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDG 232
Query: 801 XXXXXXXXXXXXEEENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSGG 959
EEENRS +KQKLEKAEN+ LAMRKQS G
Sbjct: 233 GKLDVGNAEVKLEEENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEG 285
Score = 53.9 bits (128), Expect(2) = 1e-76
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQAAVDGPPEQKGE 1044
EGLTKEYDRLLEEH KLQAAVDGP ++K E
Sbjct: 284 EGLTKEYDRLLEEHAKLQAAVDGPMDKKEE 313
>ref|NP_005736.3| B-cell receptor-associated protein 31 isoform b [Homo sapiens].
Length = 246
Score = 237 bits (605), Expect(2) = 4e-72
Identities = 133/218 (61%), Positives = 139/218 (63%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
MSLQWTAVATFLYAEVF VLLLCIPFISPKRWQKIFKSRLVEL+V+YGNTFF
Sbjct: 1 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV 60
Query: 486 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 665
DA+REIRKYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 666 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 845
TLISQQATLLASN NDQLKK EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE 180
Query: 846 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSGG 959
NRS +KQKLEKAEN+ LAMRKQS G
Sbjct: 181 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEG 218
Score = 53.9 bits (128), Expect(2) = 4e-72
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQAAVDGPPEQKGE 1044
EGLTKEYDRLLEEH KLQAAVDGP ++K E
Sbjct: 217 EGLTKEYDRLLEEHAKLQAAVDGPMDKKEE 246
>ref|NP_001132913.1| B-cell receptor-associated protein 31 isoform b [Homo sapiens].
Length = 246
Score = 237 bits (605), Expect(2) = 4e-72
Identities = 133/218 (61%), Positives = 139/218 (63%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
MSLQWTAVATFLYAEVF VLLLCIPFISPKRWQKIFKSRLVEL+V+YGNTFF
Sbjct: 1 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV 60
Query: 486 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 665
DA+REIRKYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYIAG V
Sbjct: 61 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120
Query: 666 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 845
TLISQQATLLASN NDQLKK EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE 180
Query: 846 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSGG 959
NRS +KQKLEKAEN+ LAMRKQS G
Sbjct: 181 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEG 218
Score = 53.9 bits (128), Expect(2) = 4e-72
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQAAVDGPPEQKGE 1044
EGLTKEYDRLLEEH KLQAAVDGP ++K E
Sbjct: 217 EGLTKEYDRLLEEHAKLQAAVDGPMDKKEE 246
>ref|NP_001008405.1| B-cell receptor-associated protein 29 isoform a [Homo sapiens].
Length = 348
Score = 116 bits (290), Expect(2) = 1e-28
Identities = 73/217 (33%), Positives = 101/217 (46%), Gaps = 1/217 (0%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N F
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 60
Query: 486 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 662
DA+RE+RKY V T + + + P A EH MKLFR+QRNLYI+G
Sbjct: 61 VLFLDAVREVRKYSSVHTIEKSSTSRPDAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 663 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 842
VTLI+Q A L++ N++LK+ E
Sbjct: 121 VTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKR-----ILKSHGKDEECVLEA 175
Query: 843 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQS 953
EN+ + L KA+N+ + M+ QS
Sbjct: 176 ENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQS 212
Score = 29.6 bits (65), Expect(2) = 1e-28
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQ 1008
E L+KEYD+LL+EH++LQ
Sbjct: 213 ERLSKEYDQLLKEHSELQ 230
>ref|NP_061332.2| B-cell receptor-associated protein 29 isoform b [Homo sapiens].
Length = 241
Score = 116 bits (290), Expect(2) = 1e-28
Identities = 73/217 (33%), Positives = 101/217 (46%), Gaps = 1/217 (0%)
Frame = +3
Query: 306 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 485
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N F
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 60
Query: 486 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 662
DA+RE+RKY V T + + + P A EH MKLFR+QRNLYI+G
Sbjct: 61 VLFLDAVREVRKYSSVHTIEKSSTSRPDAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 663 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 842
VTLI+Q A L++ N++LK+ E
Sbjct: 121 VTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKR-----ILKSHGKDEECVLEA 175
Query: 843 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQS 953
EN+ + L KA+N+ + M+ QS
Sbjct: 176 ENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQS 212
Score = 29.6 bits (65), Expect(2) = 1e-28
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +1
Query: 955 EGLTKEYDRLLEEHTKLQ 1008
E L+KEYD+LL+EH++LQ
Sbjct: 213 ERLSKEYDQLLKEHSELQ 230
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,251,875
Number of extensions: 1157776
Number of successful extensions: 6164
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6126
Number of HSP's successfully gapped: 10
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012386
(1181 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 519 e-144
>Sscrofa_ChrX
|| Length = 144288218
Score = 519 bits (262), Expect = e-144
Identities = 262/262 (100%)
Strand = Plus / Minus
Query: 1 gtgcccgctcggggccccgtcgggggttgtccggagccggctgggcgccggggctgccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048964 gtgcccgctcggggccccgtcgggggttgtccggagccggctgggcgccggggctgccgg 142048905
Query: 61 gggaggcccctgtggtttctgaggagatagtttttcgagaactttctccggcaggggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048904 gggaggcccctgtggtttctgaggagatagtttttcgagaactttctccggcaggggctg 142048845
Query: 121 tgagatgcttggtggagagctgccctcgcttttggccccggctcgcgtcctctaggagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048844 tgagatgcttggtggagagctgccctcgcttttggccccggctcgcgtcctctaggagtc 142048785
Query: 181 gctcttgcggcctttctgaggcgcccggagaccttccgcccctcggaggccggcgcggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048784 gctcttgcggcctttctgaggcgcccggagaccttccgcccctcggaggccggcgcggtg 142048725
Query: 241 gtctctctcccgccccggaagg 262
||||||||||||||||||||||
Sbjct: 142048724 gtctctctcccgccccggaagg 142048703
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 498 gatgctcttcgggagattcgcaagtacgacgatgtgaccgagaaggtgaacctgcagaac 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142042033 gatgctcttcgggagattcgcaagtacgacgatgtgaccgagaaggtgaacctgcagaac 142041974
Query: 558 aatcccggggctgtggagcatttccacatgaagctcttccgggcccagaggaacctctac 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142041973 aatcccggggctgtggagcatttccacatgaagctcttccgggcccagaggaacctctac 142041914
Query: 618 atcgccggcttctccttgctgctgtcctt 646
|||||||||||||||||||||||||||||
Sbjct: 142041913 atcgccggcttctccttgctgctgtcctt 142041885
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 260 aggaaaccggcgcgcctctccctgttggaaggcttctagcaccaggatgagtctgcagtg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048323 aggaaaccggcgcgcctctccctgttggaaggcttctagcaccaggatgagtctgcagtg 142048264
Query: 320 gactgcagttgccaccttcctctatgcggaggtcttcgctgtgctgcttctctgcattcc 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048263 gactgcagttgccaccttcctctatgcggaggtcttcgctgtgctgcttctctgcattcc 142048204
Query: 380 cttcatttctcccaaaag 397
||||||||||||||||||
Sbjct: 142048203 cttcatttctcccaaaag 142048186
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 647 cctgcttagacgcctggtaactctcatctcccagcaggccacgctgctggcctccaatga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142024774 cctgcttagacgcctggtaactctcatctcccagcaggccacgctgctggcctccaatga 142024715
Query: 707 agcctttaaaaagcaggcagagagcgctagtgaagcagccaagaagtacatggaagagaa 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142024714 agcctttaaaaagcaggcagagagcgctagtgaagcagccaagaagtacatggaagagaa 142024655
Query: 767 cgaccagctgaagaagg 783
|||||||||||||||||
Sbjct: 142024654 cgaccagctgaagaagg 142024638
Score = 242 bits (122), Expect = 4e-61
Identities = 125/126 (99%)
Strand = Plus / Minus
Query: 781 aggaagctgctgtgggcggagtcaagttagatggcggcgacgcaggagggaaggtggagg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142023810 aggaagctgctgtgggcggagtcaagttagatggcggcgacgcaggagggaaggtggagg 142023751
Query: 841 aagagaacaggagcctgaaggctgagctgaaaaggctgaaggaagagctggccgtcagca 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 142023750 aagagaacaggagcctgaaggctgagctgaagaggctgaaggaagagctggccgtcagca 142023691
Query: 901 agcaga 906
||||||
Sbjct: 142023690 agcaga 142023685
Score = 226 bits (114), Expect = 2e-56
Identities = 168/181 (92%), Gaps = 4/181 (2%)
Strand = Plus / Minus
Query: 1004 tgcaggcggcggtagatggccccccggaacagaagggagagtgagggcccctgtttccct 1063
||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||
Sbjct: 142021894 tgcaggcggcggtagatggccccacggacaagaaggaggagtgagggcccctgtt-ccct 142021836
Query: 1064 gcccgtggctggctgcttcncgagagcccagccctcctcggcacttcggctcgct-ccct 1122
||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct: 142021835 gcccgtggctggctgcttcgcgagagcccagcctccctcggcacttcggctcgctcccct 142021776
Query: 1123 ccgctgctgttt-cccgcgctgcttgcagtt-cacgcgcccccagcattctgtgggggac 1180
|||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 142021775 ccgctgctgtttccccgcgctgcttgcagttccacgcgcccccagcattctgtaggggac 142021716
Query: 1181 c 1181
|
Sbjct: 142021715 c 142021715
Score = 196 bits (99), Expect = 2e-47
Identities = 102/103 (99%)
Strand = Plus / Minus
Query: 396 agatggcagaagattttcaagtcccgccttgtggagttggtagtgacctatggcaacacc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142046550 agatggcagaagattttcaagtcccgccttgtggagttggtagtgacctatggcaacacc 142046491
Query: 456 ttctttgtggttctcatcgtcatcctcgtgctgttggtcattg 498
||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 142046490 ttctttgtggttctcatcgtcatcctcgtgctgctggtcattg 142046448
Score = 188 bits (95), Expect = 5e-45
Identities = 102/103 (99%), Gaps = 1/103 (0%)
Strand = Plus / Minus
Query: 907 agctggagaaggctgaaaacgaggctctggccatgcggaagcagtcgggagggcctcacc 966
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 142023025 agctggagaaggctgaaaacgaggctctggccatgcggaagcagtcgg-agggcctcacc 142022967
Query: 967 aaggagtacgaccgcctgttggaggagcacacaaagctgcagg 1009
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142022966 aaggagtacgaccgcctgttggaggagcacacaaagctgcagg 142022924
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,834,769
Number of extensions: 243
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 8
Length of query: 1181
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1160
Effective length of database: 2,808,413,156
Effective search space: 3257759260960
Effective search space used: 3257759260960
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)