Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012388
         (1238 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014941.1| B-cell receptor-associated protein 31 [Bos t...   297   1e-80
Alignment   gi|NP_001033164.1| B-cell receptor-associated protein 29 [Bos t...   140   2e-33

>ref|NP_001014941.1| B-cell receptor-associated protein 31 [Bos taurus].
          Length = 245

 Score =  297 bits (761), Expect = 1e-80
 Identities = 166/246 (67%), Positives = 171/246 (69%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFF        
Sbjct: 1   MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60

Query: 322 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 501
               DA+REIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAG            V
Sbjct: 61  LLVIDAVREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120

Query: 502 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 681
           TLISQQATLLASN                    ND LKKE                 +EE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASDAAKKYMEENDLLKKE-AGGVTKLGGRDSEVKVQEE 179

Query: 682 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQAAVDGP 861
           NRS             V+KQKLEKAENEALAMRKQS+GLTKEYDRLLEEHTKLQAAVDGP
Sbjct: 180 NRSLKADLKRLKDELAVNKQKLEKAENEALAMRKQSKGLTKEYDRLLEEHTKLQAAVDGP 239

Query: 862 TDKKEE 879
           +DKKEE
Sbjct: 240 SDKKEE 245


>ref|NP_001033164.1| B-cell receptor-associated protein 29 [Bos taurus].
          Length = 240

 Score =  140 bits (353), Expect = 2e-33
 Identities = 85/235 (36%), Positives = 116/235 (49%), Gaps = 1/235 (0%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           M+LQWTAVATFLYAE+  +L+ C+PFI P+RWQKIF   +   + ++ N  F        
Sbjct: 1   MTLQWTAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60

Query: 322 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 498
               DA+RE+RKY    T + +  + P A EH  MKLFR+QRNLYI+G            
Sbjct: 61  VLFLDAVREVRKYSSTHTIEKSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120

Query: 499 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 678
           VTLI+Q A  L+                      N++LK+                  E 
Sbjct: 121 VTLITQLAKELSHKGVLKHQAENINQAAKKFMEENERLKR-----LLKNYGKEEEHILEA 175

Query: 679 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQ 843
           EN+               +   L KA+N+ + M+ QSE L+KEYDRLL EH++LQ
Sbjct: 176 ENKKLEEDKEKLKTELKKASDALSKAQNDVMIMKMQSERLSKEYDRLLREHSELQ 230


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,055,205
Number of extensions: 1195528
Number of successful extensions: 5693
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5664
Number of HSP's successfully gapped: 2
Length of query: 412
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,207,134
Effective search space: 4361590138
Effective search space used: 4361590138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012388

Animal-Genome cDNA 20110601C-012388


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012388
         (1238 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_538200.1| PREDICTED: similar to B-cell receptor-associate...   303   3e-82
Alignment   gi|XP_533092.2| PREDICTED: similar to B-cell receptor-associate...   144   1e-34
Alignment   gi|XP_853216.1| PREDICTED: similar to B-cell receptor-associate...   134   2e-31

>ref|XP_538200.1| PREDICTED: similar to B-cell receptor-associated protein 31
           (BCR-associated protein Bap31) (p28 Bap31) (CDM protein)
           (6C6-AG tumor-associated antigen) (DXS1357E) [Canis
           familiaris].
          Length = 246

 Score =  303 bits (775), Expect = 3e-82
 Identities = 166/246 (67%), Positives = 170/246 (69%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFF        
Sbjct: 1   MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60

Query: 322 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 501
               DA+REIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAG            V
Sbjct: 61  LLVIDAVREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120

Query: 502 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 681
           TLISQQATLLASN                    NDQLKKE                 EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKEAAAGGVKLDGKDAEEKVEEE 180

Query: 682 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQAAVDGP 861
           NRS             ++KQKLEKAE EA+AMRKQSEGLTKEYDRLLEEH KLQAAVDGP
Sbjct: 181 NRSLKADLKKLKDELDINKQKLEKAEREAVAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP 240

Query: 862 TDKKEE 879
           TDKKEE
Sbjct: 241 TDKKEE 246


>ref|XP_533092.2| PREDICTED: similar to B-cell receptor-associated protein BAP29
           isoform d [Canis familiaris].
          Length = 293

 Score =  144 bits (364), Expect = 1e-34
 Identities = 86/235 (36%), Positives = 117/235 (49%), Gaps = 1/235 (0%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           M+LQW AVATFLYAE+  +L+ C+PFI P+RWQKIF   +   + T+ N  F        
Sbjct: 51  MTLQWVAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 110

Query: 322 XXXXDALREIRKYDDVTE-KVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 498
               DA+RE+RKY  +   +  L   PGA EH  MKLFR+QRNLYI+G            
Sbjct: 111 VLFLDAVREVRKYSSIPAIEKGLTTRPGAYEHAQMKLFRSQRNLYISGFSLFFWLVLRRL 170

Query: 499 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 678
           VTLI+Q A  L++                     N++LK+                  E 
Sbjct: 171 VTLITQLAKELSNKGVLKTQAENTNEAAKKFMEENERLKQ-----LLKSYVKEEEHILET 225

Query: 679 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQ 843
           EN+               + + L KA+ + + MR QSE L+KEYDRLL+EH++LQ
Sbjct: 226 ENKKLVEDQEKLKTELKKTSEALSKAQKDVMTMRMQSERLSKEYDRLLKEHSELQ 280


>ref|XP_853216.1| PREDICTED: similar to B-cell receptor-associated protein 31 [Canis
           familiaris].
          Length = 144

 Score =  134 bits (336), Expect = 2e-31
 Identities = 74/125 (59%), Positives = 78/125 (62%)
 Frame = +1

Query: 247 FKSRLVELVVTYGNTFFXXXXXXXXXXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMK 426
           F+  LVELVVTYGNTFF            DA+REIRKYDDVTEKVNLQNNPGAVEHFHMK
Sbjct: 5   FQVCLVELVVTYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAVEHFHMK 64

Query: 427 LFRAQRNLYIAGXXXXXXXXXXXXVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXND 606
           LFRAQRNLY+AG            VTLISQQATLL +N                    ND
Sbjct: 65  LFRAQRNLYVAGFSLLLSFLLRGLVTLISQQATLLVANEAFKKQAESASEAAKKYMEEND 124

Query: 607 QLKKE 621
           QLKKE
Sbjct: 125 QLKKE 129


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,592,691
Number of extensions: 1187368
Number of successful extensions: 6031
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5983
Number of HSP's successfully gapped: 3
Length of query: 412
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 307
Effective length of database: 15,374,224
Effective search space: 4719886768
Effective search space used: 4719886768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012388
         (1238 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003135528.2| PREDICTED: b-cell receptor-associated protei...   311   6e-85
Alignment   gi|XP_003357558.1| PREDICTED: b-cell receptor-associated protei...   137   1e-32
Alignment   gi|XP_003357557.1| PREDICTED: b-cell receptor-associated protei...   137   1e-32

>ref|XP_003135528.2| PREDICTED: b-cell receptor-associated protein 31-like [Sus scrofa].
          Length = 246

 Score =  311 bits (796), Expect = 6e-85
 Identities = 172/246 (69%), Positives = 172/246 (69%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFF        
Sbjct: 1   MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60

Query: 322 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 501
               DALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAG            V
Sbjct: 61  LLVIDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120

Query: 502 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 681
           TLISQQATLLASN                    NDQLKKE                 EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKEAAVGGVKLDGGDAGGKVEEE 180

Query: 682 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQAAVDGP 861
           NRS             VSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQAAVDGP
Sbjct: 181 NRSLKAELKRLKEELAVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQAAVDGP 240

Query: 862 TDKKEE 879
           TDKKEE
Sbjct: 241 TDKKEE 246


>ref|XP_003357558.1| PREDICTED: b-cell receptor-associated protein 29-like isoform 2
           [Sus scrofa].
          Length = 241

 Score =  137 bits (345), Expect = 1e-32
 Identities = 84/235 (35%), Positives = 115/235 (48%), Gaps = 1/235 (0%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           M+LQW AVATFLYAE+  +L+ C+PFI P+RWQKIF   +   + T+ N  F        
Sbjct: 1   MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAFLTIIVLLI 60

Query: 322 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 498
               DA+RE+RKY      + +  + P A EH  MKLFR+QRNLYI+G            
Sbjct: 61  VLFLDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120

Query: 499 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 678
           VTLI+Q A  L++                     N++LK+                  EE
Sbjct: 121 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKR-----LLKNYGKEEDHILEE 175

Query: 679 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQ 843
           EN+                   L KA+N+ + M+ QSE L+KEYD LL+EH++LQ
Sbjct: 176 ENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQ 230


>ref|XP_003357557.1| PREDICTED: b-cell receptor-associated protein 29-like isoform 1
           [Sus scrofa].
          Length = 241

 Score =  137 bits (345), Expect = 1e-32
 Identities = 84/235 (35%), Positives = 115/235 (48%), Gaps = 1/235 (0%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           M+LQW AVATFLYAE+  +L+ C+PFI P+RWQKIF   +   + T+ N  F        
Sbjct: 1   MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAFLTIIVLLI 60

Query: 322 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 498
               DA+RE+RKY      + +  + P A EH  MKLFR+QRNLYI+G            
Sbjct: 61  VLFLDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120

Query: 499 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 678
           VTLI+Q A  L++                     N++LK+                  EE
Sbjct: 121 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKR-----LLKNYGKEEDHILEE 175

Query: 679 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQ 843
           EN+                   L KA+N+ + M+ QSE L+KEYD LL+EH++LQ
Sbjct: 176 ENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQ 230


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,882,667
Number of extensions: 826970
Number of successful extensions: 3838
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3815
Number of HSP's successfully gapped: 3
Length of query: 412
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,829,335
Effective search space: 2745923185
Effective search space used: 2745923185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012388
         (1238 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_036190.2| B-cell receptor-associated protein 31 [Mus musc...   276   3e-74
Alignment   gi|NP_001157562.1| B-cell receptor-associated protein 29 [Mus m...   136   3e-32
Alignment   gi|NP_031556.1| B-cell receptor-associated protein 29 [Mus musc...   136   3e-32

>ref|NP_036190.2| B-cell receptor-associated protein 31 [Mus musculus].
          Length = 245

 Score =  276 bits (705), Expect = 3e-74
 Identities = 155/246 (63%), Positives = 164/246 (66%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           MSLQWT VATFLYAEVFAVLLLCIPFISPKRWQK+FKSRLVELVVTYGNTFF        
Sbjct: 1   MSLQWTTVATFLYAEVFAVLLLCIPFISPKRWQKVFKSRLVELVVTYGNTFFVVLIVILV 60

Query: 322 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 501
               DA+REI KYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYIAG            V
Sbjct: 61  LLVIDAVREILKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120

Query: 502 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 681
           TLISQQATLLASN                    NDQLKK                   EE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAEDGDKLDIGNTEMKL-EE 179

Query: 682 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQAAVDGP 861
           N+S              +K+KLEKAENEALAM+KQSEGLTKEYDRLLEEH KLQA+V GP
Sbjct: 180 NKSLKNDLRKLKDELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQASVRGP 239

Query: 862 TDKKEE 879
           + KKEE
Sbjct: 240 SVKKEE 245


>ref|NP_001157562.1| B-cell receptor-associated protein 29 [Mus musculus].
          Length = 240

 Score =  136 bits (343), Expect = 3e-32
 Identities = 86/236 (36%), Positives = 117/236 (49%), Gaps = 2/236 (0%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           M++QW AVA+FLYAE+  +LL C+PFI P+RWQKIF   +   + ++ N  F        
Sbjct: 1   MTIQWAAVASFLYAEIGLILLFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60

Query: 322 XXXXDALREIRKYD--DVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXX 495
               DA+RE+RKY   +V EK N    P A EH  MKLFR+QRNLYI+G           
Sbjct: 61  ILFLDAVREVRKYSSTNVVEK-NSAIRPSAFEHTQMKLFRSQRNLYISGFSLFFWLVLRR 119

Query: 496 XVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXE 675
            VTLI+Q A  +A+                     N++LK                   E
Sbjct: 120 LVTLITQLAKEIANKGVLKIQAENTNKAAKKFMEENEKLK------LGLRNDNAEEHLLE 173

Query: 676 EENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQ 843
            EN+               +   L KA+N+ + M+ QSE L+KEYDRLL+EH++LQ
Sbjct: 174 AENKKLIESKENLKTELKKASDALLKAQNDVMTMKIQSERLSKEYDRLLKEHSELQ 229


>ref|NP_031556.1| B-cell receptor-associated protein 29 [Mus musculus].
          Length = 240

 Score =  136 bits (343), Expect = 3e-32
 Identities = 86/236 (36%), Positives = 117/236 (49%), Gaps = 2/236 (0%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           M++QW AVA+FLYAE+  +LL C+PFI P+RWQKIF   +   + ++ N  F        
Sbjct: 1   MTIQWAAVASFLYAEIGLILLFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60

Query: 322 XXXXDALREIRKYD--DVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXX 495
               DA+RE+RKY   +V EK N    P A EH  MKLFR+QRNLYI+G           
Sbjct: 61  ILFLDAVREVRKYSSTNVVEK-NSAIRPSAFEHTQMKLFRSQRNLYISGFSLFFWLVLRR 119

Query: 496 XVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXE 675
            VTLI+Q A  +A+                     N++LK                   E
Sbjct: 120 LVTLITQLAKEIANKGVLKIQAENTNKAAKKFMEENEKLK------LGLRNDNAEEHLLE 173

Query: 676 EENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQ 843
            EN+               +   L KA+N+ + M+ QSE L+KEYDRLL+EH++LQ
Sbjct: 174 AENKKLIESKENLKTELKKASDALLKAQNDVMTMKIQSERLSKEYDRLLKEHSELQ 229


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,135,857
Number of extensions: 956468
Number of successful extensions: 4454
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4424
Number of HSP's successfully gapped: 3
Length of query: 412
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 308
Effective length of database: 12,493,815
Effective search space: 3848095020
Effective search space used: 3848095020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012388
         (1238 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001132929.1| B-cell receptor-associated protein 31 isofor...   301   6e-82
Alignment   gi|NP_005736.3| B-cell receptor-associated protein 31 isoform b...   291   8e-79
Alignment   gi|NP_001132913.1| B-cell receptor-associated protein 31 isofor...   291   8e-79
Alignment   gi|NP_061332.2| B-cell receptor-associated protein 29 isoform b...   142   8e-34
Alignment   gi|NP_001008405.1| B-cell receptor-associated protein 29 isofor...   141   1e-33

>ref|NP_001132929.1| B-cell receptor-associated protein 31 isoform a [Homo sapiens].
          Length = 313

 Score =  301 bits (772), Expect = 6e-82
 Identities = 166/256 (64%), Positives = 172/256 (67%)
 Frame = +1

Query: 112 SPCWKASSTRMSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNT 291
           S C K SS RMSLQWTAVATFLYAEVF VLLLCIPFISPKRWQKIFKSRLVEL+V+YGNT
Sbjct: 58  SSCGKPSSNRMSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNT 117

Query: 292 FFXXXXXXXXXXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXX 471
           FF            DA+REIRKYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYIAG   
Sbjct: 118 FFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSL 177

Query: 472 XXXXXXXXXVTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXX 651
                    VTLISQQATLLASN                    NDQLKK           
Sbjct: 178 LLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDV 237

Query: 652 XXXXXXXEEENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEH 831
                  EEENRS              +KQKLEKAEN+ LAMRKQSEGLTKEYDRLLEEH
Sbjct: 238 GNAEVKLEEENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEH 297

Query: 832 TKLQAAVDGPTDKKEE 879
            KLQAAVDGP DKKEE
Sbjct: 298 AKLQAAVDGPMDKKEE 313


>ref|NP_005736.3| B-cell receptor-associated protein 31 isoform b [Homo sapiens].
          Length = 246

 Score =  291 bits (745), Expect = 8e-79
 Identities = 160/246 (65%), Positives = 166/246 (67%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           MSLQWTAVATFLYAEVF VLLLCIPFISPKRWQKIFKSRLVEL+V+YGNTFF        
Sbjct: 1   MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV 60

Query: 322 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 501
               DA+REIRKYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYIAG            V
Sbjct: 61  LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120

Query: 502 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 681
           TLISQQATLLASN                    NDQLKK                  EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE 180

Query: 682 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQAAVDGP 861
           NRS              +KQKLEKAEN+ LAMRKQSEGLTKEYDRLLEEH KLQAAVDGP
Sbjct: 181 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP 240

Query: 862 TDKKEE 879
            DKKEE
Sbjct: 241 MDKKEE 246


>ref|NP_001132913.1| B-cell receptor-associated protein 31 isoform b [Homo sapiens].
          Length = 246

 Score =  291 bits (745), Expect = 8e-79
 Identities = 160/246 (65%), Positives = 166/246 (67%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           MSLQWTAVATFLYAEVF VLLLCIPFISPKRWQKIFKSRLVEL+V+YGNTFF        
Sbjct: 1   MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV 60

Query: 322 XXXXDALREIRKYDDVTEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXXV 501
               DA+REIRKYDDVTEKVNLQNNPGA+EHFHMKLFRAQRNLYIAG            V
Sbjct: 61  LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV 120

Query: 502 TLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEEE 681
           TLISQQATLLASN                    NDQLKK                  EEE
Sbjct: 121 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE 180

Query: 682 NRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQAAVDGP 861
           NRS              +KQKLEKAEN+ LAMRKQSEGLTKEYDRLLEEH KLQAAVDGP
Sbjct: 181 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP 240

Query: 862 TDKKEE 879
            DKKEE
Sbjct: 241 MDKKEE 246


>ref|NP_061332.2| B-cell receptor-associated protein 29 isoform b [Homo sapiens].
          Length = 241

 Score =  142 bits (357), Expect = 8e-34
 Identities = 86/245 (35%), Positives = 122/245 (49%), Gaps = 1/245 (0%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           M+LQW AVATFLYAE+  +L+ C+PFI P+RWQKIF   +   + T+ N  F        
Sbjct: 1   MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 60

Query: 322 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 498
               DA+RE+RKY  V T + +  + P A EH  MKLFR+QRNLYI+G            
Sbjct: 61  VLFLDAVREVRKYSSVHTIEKSSTSRPDAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120

Query: 499 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 678
           VTLI+Q A  L++                     N++LK+                  E 
Sbjct: 121 VTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKR-----ILKSHGKDEECVLEA 175

Query: 679 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQAAVDG 858
           EN+               +   L KA+N+ + M+ QSE L+KEYD+LL+EH++LQ  ++ 
Sbjct: 176 ENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSELQDRLER 235

Query: 859 PTDKK 873
              K+
Sbjct: 236 GNKKR 240


>ref|NP_001008405.1| B-cell receptor-associated protein 29 isoform a [Homo sapiens].
          Length = 348

 Score =  141 bits (355), Expect = 1e-33
 Identities = 85/235 (36%), Positives = 118/235 (50%), Gaps = 1/235 (0%)
 Frame = +1

Query: 142 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFXXXXXXXX 321
           M+LQW AVATFLYAE+  +L+ C+PFI P+RWQKIF   +   + T+ N  F        
Sbjct: 1   MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 60

Query: 322 XXXXDALREIRKYDDV-TEKVNLQNNPGAVEHFHMKLFRAQRNLYIAGXXXXXXXXXXXX 498
               DA+RE+RKY  V T + +  + P A EH  MKLFR+QRNLYI+G            
Sbjct: 61  VLFLDAVREVRKYSSVHTIEKSSTSRPDAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120

Query: 499 VTLISQQATLLASNXXXXXXXXXXXXXXXXXXXXNDQLKKEXXXXXXXXXXXXXXXXXEE 678
           VTLI+Q A  L++                     N++LK+                  E 
Sbjct: 121 VTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKR-----ILKSHGKDEECVLEA 175

Query: 679 ENRSXXXXXXXXXXXXXVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQ 843
           EN+               +   L KA+N+ + M+ QSE L+KEYD+LL+EH++LQ
Sbjct: 176 ENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSELQ 230


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,678,324
Number of extensions: 1152449
Number of successful extensions: 5475
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5440
Number of HSP's successfully gapped: 5
Length of query: 412
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,835,944
Effective search space: 4554634808
Effective search space used: 4554634808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012388
         (1238 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                          547   e-153

>Sscrofa_ChrX 
||          Length = 144288218

 Score =  547 bits (276), Expect = e-153
 Identities = 329/339 (97%), Gaps = 7/339 (2%)
 Strand = Plus / Minus

                                                                             
Query: 839       tgcaggcggcggtagatggccccacggacaagaaggaggagtgagggcccctgttccctg 898
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142021894 tgcaggcggcggtagatggccccacggacaagaaggaggagtgagggcccctgttccctg 142021835

                                                                             
Query: 899       cccgtggctggctgcttcgcgagagcccagcctccctcggcacttcggctcgctcccctc 958
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142021834 cccgtggctggctgcttcgcgagagcccagcctccctcggcacttcggctcgctcccctc 142021775

                                                                             
Query: 959       cgctgctgtttccccgcgctgcttgcagttccacgcgcccccagcattctgtaggggacc 1018
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142021774 cgctgctgtttccccgcgctgcttgcagttccacgcgcccccagcattctgtaggggacc 142021715

                                                                             
Query: 1019      cagttcccgtccaggatgagcagggcttgctttccgctggattgagccccttttgtgtta 1078
                 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 142021714 cagttcccgtccaggatgagcagggcttgctttccgctggattgagcccc-tttgtgtta 142021656

                                                                             
Query: 1079      cgtgttgctgtttcgcgcctccaaggcccccctttctctgggtcctgcaggaaagcagat 1138
                 |||||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||
Sbjct: 142021655 cgtgttgctg-ttcgcgcctccaagg-ccccctttctct-ggtcctgcaggaaggcagat 142021599

                                                        
Query: 1139      ggagacaaggaagagtagaggtttcctgggggcaataaa 1177
                 ||||   ||||||||||||||||| || |||||||||||
Sbjct: 142021598 ggag--caggaagagtagaggttt-ctcggggcaataaa 142021563



 Score =  295 bits (149), Expect = 3e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                             
Query: 334       gatgctcttcgggagattcgcaagtacgacgatgtgaccgagaaggtgaacctgcagaac 393
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142042033 gatgctcttcgggagattcgcaagtacgacgatgtgaccgagaaggtgaacctgcagaac 142041974

                                                                             
Query: 394       aatcccggggctgtggagcatttccacatgaagctcttccgggcccagaggaacctctac 453
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142041973 aatcccggggctgtggagcatttccacatgaagctcttccgggcccagaggaacctctac 142041914

                                              
Query: 454       atcgccggcttctccttgctgctgtcctt 482
                 |||||||||||||||||||||||||||||
Sbjct: 142041913 atcgccggcttctccttgctgctgtcctt 142041885



 Score =  272 bits (137), Expect = 4e-70
 Identities = 137/137 (100%)
 Strand = Plus / Minus

                                                                             
Query: 483       cctgcttagacgcctggtaactctcatctcccagcaggccacgctgctggcctccaatga 542
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142024774 cctgcttagacgcctggtaactctcatctcccagcaggccacgctgctggcctccaatga 142024715

                                                                             
Query: 543       agcctttaaaaagcaggcagagagcgctagtgaagcagccaagaagtacatggaagagaa 602
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142024714 agcctttaaaaagcaggcagagagcgctagtgaagcagccaagaagtacatggaagagaa 142024655

                                  
Query: 603       cgaccagctgaagaagg 619
                 |||||||||||||||||
Sbjct: 142024654 cgaccagctgaagaagg 142024638



 Score =  272 bits (137), Expect = 4e-70
 Identities = 137/137 (100%)
 Strand = Plus / Minus

                                                                             
Query: 97        ggaaaccggcgcgcctctccctgttggaaggcttctagcaccaggatgagtctgcagtgg 156
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048322 ggaaaccggcgcgcctctccctgttggaaggcttctagcaccaggatgagtctgcagtgg 142048263

                                                                             
Query: 157       actgcagttgccaccttcctctatgcggaggtcttcgctgtgctgcttctctgcattccc 216
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142048262 actgcagttgccaccttcctctatgcggaggtcttcgctgtgctgcttctctgcattccc 142048203

                                  
Query: 217       ttcatttctcccaaaag 233
                 |||||||||||||||||
Sbjct: 142048202 ttcatttctcccaaaag 142048186



 Score =  204 bits (103), Expect = 8e-50
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                             
Query: 232       agatggcagaagattttcaagtcccgccttgtggagttggtagtgacctatggcaacacc 291
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142046550 agatggcagaagattttcaagtcccgccttgtggagttggtagtgacctatggcaacacc 142046491

                                                            
Query: 292       ttctttgtggttctcatcgtcatcctcgtgctgctggtcattg 334
                 |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142046490 ttctttgtggttctcatcgtcatcctcgtgctgctggtcattg 142046448



 Score =  202 bits (102), Expect = 3e-49
 Identities = 102/102 (100%)
 Strand = Plus / Minus

                                                                             
Query: 743       agctggagaaggctgaaaacgaggctctggccatgcggaagcagtcggagggcctcacca 802
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142023025 agctggagaaggctgaaaacgaggctctggccatgcggaagcagtcggagggcctcacca 142022966

                                                           
Query: 803       aggagtacgaccgcctgttggaggagcacacaaagctgcagg 844
                 ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142022965 aggagtacgaccgcctgttggaggagcacacaaagctgcagg 142022924



 Score =  194 bits (98), Expect = 8e-47
 Identities = 98/98 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         cgcttccggttccggctgcgggggaaggggcggggccggcgtggtggtgggagagtttgg 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142049283 cgcttccggttccggctgcgggggaaggggcggggccggcgtggtggtgggagagtttgg 142049224

                                                       
Query: 61        gggcgacgaggcgtgcgtggtggctgtggagaactcgg 98
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 142049223 gggcgacgaggcgtgcgtggtggctgtggagaactcgg 142049186



 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                            
Query: 617       aggaagctgctgtgggcggagtcaagttagatggcggcgacgc 659
                 |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142023810 aggaagctgctgtgggcggagtcaagttagatggcggcgacgc 142023768


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,714,216
Number of extensions: 219
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 8
Length of query: 1238
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1217
Effective length of database: 2,808,413,156
Effective search space: 3417838810852
Effective search space used: 3417838810852
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)